Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC sh: /bin/sh /cygdrive/c/petsc-2.3.2-p10/python/BuildSystem/config/packages/config.guess Executing: /bin/sh /cygdrive/c/petsc-2.3.2-p10/python/BuildSystem/config/packages/config.guess sh: i686-pc-cygwin sh: /bin/sh /cygdrive/c/petsc-2.3.2-p10/python/BuildSystem/config/packages/config.sub i686-pc-cygwin Executing: /bin/sh /cygdrive/c/petsc-2.3.2-p10/python/BuildSystem/config/packages/config.sub i686-pc-cygwin sh: i686-pc-cygwin ================================================================================ ** Cygwin-python-2.4 detected. Threads do not work correctly with this version * ********* Disabling thread usage for this run of config/configure.py ********** ================================================================================ ================================================================================ ================================================================================ Starting Configure Run at Fri Nov 13 20:53:05 2009 Configure Options: --with-cc=/cygdrive/cpetsc-2.3.2-p10/bin/win32fe/win32fe cl --with-fc=0 --download-c-blas-lapack=1 --with-timer=nt CPPFFLAGS=-D_CRT_SECURE_ND_DEPRECATE --with-x=0 --useThreads=0 --with-shared=0 --with-debugging=0 --useThreads=0 --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions Working directory: /cygdrive/c/petsc-2.3.2-p10 Python version: 2.5.2 (r252:60911, Dec 2 2008, 09:26:14) [GCC 3.4.4 (cygming special, gdc 0.12, using dmd 0.125)] ================================================================================ Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/cygdrive/c/petsc-2.3.2-p10/python/BuildSystem/config/framework.py:807) TESTING: configureExternalPackagesDir from config.framework(python/BuildSystem/config/framework.py:807) ================================================================================ TEST configureLibrary from PETSc.packages.PVODE(/cygdrive/c/petsc-2.3.2-p10/python/PETSc/packages/PVODE.py:10) TESTING: configureLibrary from PETSc.packages.PVODE(python/PETSc/packages/PVODE.py:10) Find a PVODE installation and check if it can work with PETSc ================================================================================ TEST configureLibrary from PETSc.packages.NetCDF(/cygdrive/c/petsc-2.3.2-p10/python/PETSc/packages/NetCDF.py:10) TESTING: configureLibrary from PETSc.packages.NetCDF(python/PETSc/packages/NetCDF.py:10) Find a NetCDF installation and check if it can work with PETSc ================================================================================ TEST configureBitKeeper from config.sourceControl(/cygdrive/c/petsc-2.3.2-p10/python/BuildSystem/config/sourceControl.py:23) TESTING: configureBitKeeper from config.sourceControl(python/BuildSystem/config/sourceControl.py:23) Find the BitKeeper executable Checking for program /usr/local/bin/bk...not found Checking for program /usr/bin/bk...not found Checking for program /bin/bk...not found Checking for program /usr/X11R6/bin/bk...not found Checking for program /usr/bin/bk...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/WinNT/bk...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/MSDev98/Bin/bk...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/bk...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/VC98/bin/bk...not found Checking for program /cygdrive/c/elle/elle/binwx/bk...not found Checking for program /bk...not found Checking for program /cygdrive/c/DOUBLE~1/bin/bk...not found Checking for program /usr/lib/lapack/bk...not found Checking for program /cygdrive/c/bk...not found ================================================================================ TEST configureCVS from config.sourceControl(/cygdrive/c/petsc-2.3.2-p10/python/BuildSystem/config/sourceControl.py:30) TESTING: configureCVS from config.sourceControl(python/BuildSystem/config/sourceControl.py:30) Find the CVS executable Checking for program /usr/local/bin/cvs...not found Checking for program /usr/bin/cvs...not found Checking for program /bin/cvs...not found Checking for program /usr/X11R6/bin/cvs...not found Checking for program /usr/bin/cvs...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/WinNT/cvs...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/MSDev98/Bin/cvs...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/cvs...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/VC98/bin/cvs...not found Checking for program /cygdrive/c/elle/elle/binwx/cvs...not found Checking for program /cvs...not found Checking for program /cygdrive/c/DOUBLE~1/bin/cvs...not found Checking for program /usr/lib/lapack/cvs...not found Checking for program /cygdrive/c/cvs...not found ================================================================================ TEST configureSubversion from config.sourceControl(/cygdrive/c/petsc-2.3.2-p10/python/BuildSystem/config/sourceControl.py:35) TESTING: configureSubversion from config.sourceControl(python/BuildSystem/config/sourceControl.py:35) Find the Subversion executable Checking for program /usr/local/bin/svn...not found Checking for program /usr/bin/svn...not found Checking for program /bin/svn...not found Checking for program /usr/X11R6/bin/svn...not found Checking for program /usr/bin/svn...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/WinNT/svn...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/MSDev98/Bin/svn...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/svn...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/VC98/bin/svn...not found Checking for program /cygdrive/c/elle/elle/binwx/svn...not found Checking for program /svn...not found Checking for program /cygdrive/c/DOUBLE~1/bin/svn...not found Checking for program /usr/lib/lapack/svn...not found Checking for program /cygdrive/c/svn...not found ================================================================================ TEST configureMkdir from config.programs(/cygdrive/c/petsc-2.3.2-p10/python/BuildSystem/config/programs.py:21) TESTING: configureMkdir from config.programs(python/BuildSystem/config/programs.py:21) Make sure we can have mkdir automatically make intermediate directories Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...found sh: /usr/bin/mkdir -p .conftest/tmp Executing: /usr/bin/mkdir -p .conftest/tmp sh: Adding -p flag to /usr/bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/usr/bin/mkdir -p" ================================================================================ TEST configurePrograms from config.programs(/cygdrive/c/petsc-2.3.2-p10/python/BuildSystem/config/programs.py:43) TESTING: configurePrograms from config.programs(python/BuildSystem/config/programs.py:43) Check for the programs needed to build and run PETSc Checking for program /usr/local/bin/sh...not found Checking for program /usr/bin/sh...found Defined make macro "SHELL" to "/usr/bin/sh" Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...found Defined make macro "MV" to "/usr/bin/mv" Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...found Defined make macro "CP" to "/usr/bin/cp" Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...found Defined make macro "RM" to "/usr/bin/rm -f" Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...not found Checking for program /bin/diff...not found Checking for program /usr/X11R6/bin/diff...not found Checking for program /usr/bin/diff...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/WinNT/diff...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/MSDev98/Bin/diff...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/diff...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/VC98/bin/diff...not found Checking for program /cygdrive/c/elle/elle/binwx/diff...not found Checking for program /diff...not found Checking for program /cygdrive/c/DOUBLE~1/bin/diff...not found Checking for program /usr/lib/lapack/diff...not found Checking for program /cygdrive/c/diff...not found ********************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): --------------------------------------------------------------------------------------- Could not locate diff executable ********************************************************************************* File "./config/configure.py", line 175, in petsc_configure framework.configure(out = sys.stdout) File "/cygdrive/c/petsc-2.3.2-p10/python/BuildSystem/config/framework.py", line 876, in configure child.configure() File "/cygdrive/c/petsc-2.3.2-p10/python/BuildSystem/config/programs.py", line 84, in configure self.executeTest(self.configurePrograms) File "/cygdrive/c/petsc-2.3.2-p10/python/BuildSystem/config/base.py", line 93, in executeTest return apply(test, args,kargs) File "/cygdrive/c/petsc-2.3.2-p10/python/BuildSystem/config/programs.py", line 73, in configurePrograms raise RuntimeError('Could not locate diff executable') ================================================================================= ================================================================================= Previous configure logs below ================================================================================= Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC sh: /bin/sh /cygdrive/c/petsc-2.3.2-p10/python/BuildSystem/config/packages/config.guess Executing: /bin/sh /cygdrive/c/petsc-2.3.2-p10/python/BuildSystem/config/packages/config.guess sh: i686-pc-cygwin sh: /bin/sh /cygdrive/c/petsc-2.3.2-p10/python/BuildSystem/config/packages/config.sub i686-pc-cygwin Executing: /bin/sh /cygdrive/c/petsc-2.3.2-p10/python/BuildSystem/config/packages/config.sub i686-pc-cygwin sh: i686-pc-cygwin ================================================================================ ** Cygwin-python-2.4 detected. Threads do not work correctly with this version * ********* Disabling thread usage for this run of config/configure.py ********** ================================================================================ ================================================================================ ================================================================================ Starting Configure Run at Fri Nov 13 20:50:47 2009 Configure Options: --with-cc=/cygdrive/cpetsc-2.3.2-p10/bin/win32fe/win32fe cl --with-fc=0 --useThreads=0 --with-shared=0 --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions Working directory: /cygdrive/c/petsc-2.3.2-p10 Python version: 2.5.2 (r252:60911, Dec 2 2008, 09:26:14) [GCC 3.4.4 (cygming special, gdc 0.12, using dmd 0.125)] ================================================================================ Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/cygdrive/c/petsc-2.3.2-p10/python/BuildSystem/config/framework.py:807) TESTING: configureExternalPackagesDir from config.framework(python/BuildSystem/config/framework.py:807) ================================================================================ TEST configureLibrary from PETSc.packages.PVODE(/cygdrive/c/petsc-2.3.2-p10/python/PETSc/packages/PVODE.py:10) TESTING: configureLibrary from PETSc.packages.PVODE(python/PETSc/packages/PVODE.py:10) Find a PVODE installation and check if it can work with PETSc ================================================================================ TEST configureLibrary from PETSc.packages.NetCDF(/cygdrive/c/petsc-2.3.2-p10/python/PETSc/packages/NetCDF.py:10) TESTING: configureLibrary from PETSc.packages.NetCDF(python/PETSc/packages/NetCDF.py:10) Find a NetCDF installation and check if it can work with PETSc ================================================================================ TEST configureBitKeeper from config.sourceControl(/cygdrive/c/petsc-2.3.2-p10/python/BuildSystem/config/sourceControl.py:23) TESTING: configureBitKeeper from config.sourceControl(python/BuildSystem/config/sourceControl.py:23) Find the BitKeeper executable Checking for program /usr/local/bin/bk...not found Checking for program /usr/bin/bk...not found Checking for program /bin/bk...not found Checking for program /usr/X11R6/bin/bk...not found Checking for program /usr/bin/bk...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/WinNT/bk...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/MSDev98/Bin/bk...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/bk...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/VC98/bin/bk...not found Checking for program /cygdrive/c/elle/elle/binwx/bk...not found Checking for program /bk...not found Checking for program /cygdrive/c/DOUBLE~1/bin/bk...not found Checking for program /usr/lib/lapack/bk...not found Checking for program /cygdrive/c/bk...not found ================================================================================ TEST configureCVS from config.sourceControl(/cygdrive/c/petsc-2.3.2-p10/python/BuildSystem/config/sourceControl.py:30) TESTING: configureCVS from config.sourceControl(python/BuildSystem/config/sourceControl.py:30) Find the CVS executable Checking for program /usr/local/bin/cvs...not found Checking for program /usr/bin/cvs...not found Checking for program /bin/cvs...not found Checking for program /usr/X11R6/bin/cvs...not found Checking for program /usr/bin/cvs...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/WinNT/cvs...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/MSDev98/Bin/cvs...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/cvs...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/VC98/bin/cvs...not found Checking for program /cygdrive/c/elle/elle/binwx/cvs...not found Checking for program /cvs...not found Checking for program /cygdrive/c/DOUBLE~1/bin/cvs...not found Checking for program /usr/lib/lapack/cvs...not found Checking for program /cygdrive/c/cvs...not found ================================================================================ TEST configureSubversion from config.sourceControl(/cygdrive/c/petsc-2.3.2-p10/python/BuildSystem/config/sourceControl.py:35) TESTING: configureSubversion from config.sourceControl(python/BuildSystem/config/sourceControl.py:35) Find the Subversion executable Checking for program /usr/local/bin/svn...not found Checking for program /usr/bin/svn...not found Checking for program /bin/svn...not found Checking for program /usr/X11R6/bin/svn...not found Checking for program /usr/bin/svn...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/WinNT/svn...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/MSDev98/Bin/svn...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/svn...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/VC98/bin/svn...not found Checking for program /cygdrive/c/elle/elle/binwx/svn...not found Checking for program /svn...not found Checking for program /cygdrive/c/DOUBLE~1/bin/svn...not found Checking for program /usr/lib/lapack/svn...not found Checking for program /cygdrive/c/svn...not found ================================================================================ TEST configureMkdir from config.programs(/cygdrive/c/petsc-2.3.2-p10/python/BuildSystem/config/programs.py:21) TESTING: configureMkdir from config.programs(python/BuildSystem/config/programs.py:21) Make sure we can have mkdir automatically make intermediate directories Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...found sh: /usr/bin/mkdir -p .conftest/tmp Executing: /usr/bin/mkdir -p .conftest/tmp sh: Adding -p flag to /usr/bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/usr/bin/mkdir -p" ================================================================================ TEST configurePrograms from config.programs(/cygdrive/c/petsc-2.3.2-p10/python/BuildSystem/config/programs.py:43) TESTING: configurePrograms from config.programs(python/BuildSystem/config/programs.py:43) Check for the programs needed to build and run PETSc Checking for program /usr/local/bin/sh...not found Checking for program /usr/bin/sh...found Defined make macro "SHELL" to "/usr/bin/sh" Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...found Defined make macro "MV" to "/usr/bin/mv" Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...found Defined make macro "CP" to "/usr/bin/cp" Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...found Defined make macro "RM" to "/usr/bin/rm -f" Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...not found Checking for program /bin/diff...not found Checking for program /usr/X11R6/bin/diff...not found Checking for program /usr/bin/diff...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/WinNT/diff...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/MSDev98/Bin/diff...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/diff...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/VC98/bin/diff...not found Checking for program /cygdrive/c/elle/elle/binwx/diff...not found Checking for program /diff...not found Checking for program /cygdrive/c/DOUBLE~1/bin/diff...not found Checking for program /usr/lib/lapack/diff...not found Checking for program /cygdrive/c/diff...not found ********************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): --------------------------------------------------------------------------------------- Could not locate diff executable ********************************************************************************* File "./config/configure.py", line 175, in petsc_configure framework.configure(out = sys.stdout) File "/cygdrive/c/petsc-2.3.2-p10/python/BuildSystem/config/framework.py", line 876, in configure child.configure() File "/cygdrive/c/petsc-2.3.2-p10/python/BuildSystem/config/programs.py", line 84, in configure self.executeTest(self.configurePrograms) File "/cygdrive/c/petsc-2.3.2-p10/python/BuildSystem/config/base.py", line 93, in executeTest return apply(test, args,kargs) File "/cygdrive/c/petsc-2.3.2-p10/python/BuildSystem/config/programs.py", line 73, in configurePrograms raise RuntimeError('Could not locate diff executable')