Hey Walter,<div>Success with the compilation process! Thank you. However, when I try to run the yielding.json model it crashes immediately with the error message:</div><div><br></div><div>./Gale: error while loading shared libraries: libmkl_lapack.so: cannot open shared object file: No such file or directory</div>
<div><br></div><div>Cheers,</div><div>Rob<br><br><div class="gmail_quote">On Thu, May 24, 2012 at 3:39 PM, Walter Landry <span dir="ltr"><<a href="mailto:wlandry@caltech.edu" target="_blank">wlandry@caltech.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div class="im">Robert Gray <<a href="mailto:graywacke@gmail.com">graywacke@gmail.com</a>> wrote:<br>
> Still can't find libXML2 with:<br>
><br>
> ./configure.sh --hdf5-dir=$SCINET_HDF5_BASE --cxxflags="-std=c++0x" --linkflags="-lX11 -L/<br>
> scinet/gpc/intel/mkl/lib/em64t -lmkl_lapack". <br>
<br>
</div>This is looking better. You need to link in additional mkl libraries.<br>
Going by what I see at<br>
<br>
<a href="http://software.intel.com/en-us/articles/intel-mkl-link-line-advisor/" target="_blank">http://software.intel.com/en-us/articles/intel-mkl-link-line-advisor/</a><br>
<br>
My guess is linkflags should be<br>
<br>
--linkflags="-lX11 -L/scinet/gpc/intel/mkl/lib/em64t -lmkl_lapack -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -openmp -pthread -lm"<br>
<br>
You may have to change<br>
<br>
-lmkl_intel_lp64<br>
<br>
to<br>
<br>
-lmkl_intel_ilp64<br>
<br>
depending on how petsc is configured.<br>
<br>
Cheers,<br>
Walter Landry<br>
</blockquote></div><br></div>