Hi Eh, thanks for getting back to me before. I've just tried to wade through this and get hdf5 working again but without success. Upon configure, the error I get is:<br><br>checking for library containing H5Fopen... no<br>
configure: error: HDF5 library not found; try setting PHDF5_HOME<br><br>Now PHDF5_HOME is actually set:<br><br>[coneill@enki CitcomS-3.1.1]$ echo $PHDF5_HOME<br>/home/coneill/hdf5-1.8.4-patch1/hdf5/lib<br><br>Also, in the config.log file, there is the line: PHDF5_HOME='/home/coneill/hdf5-1.8.4-patch1/hdf5'<br>
<br>So this is strange. It's set, but not finding it?<br><br> echo $LD_LIBRARY_PATH<br>:/usr/local/hdf5:/home/coneill/hdf5/lib/:/home/coneill/hdf5/lib/:/home/coneill/hdf5-1.8.4-patch1/hdf5/lib<br><br>within the last directory (ie. /home/coneill/hdf5-1.8.4-patch1/hdf5/lib)<br>
<br>[coneill@enki lib]$ ls<br>libhdf5.a <a href="http://libhdf5.la">libhdf5.la</a> libhdf5.settings libhdf5_fortran.a <a href="http://libhdf5_fortran.la">libhdf5_fortran.la</a> libhdf5_hl.a <a href="http://libhdf5_hl.la">libhdf5_hl.la</a> libhdf5hl_fortran.a <a href="http://libhdf5hl_fortran.la">libhdf5hl_fortran.la</a><br>
[coneill@enki lib]$ grep H5Fopen *<br>Binary file libhdf5.a matches<br>Binary file libhdf5_fortran.a matches<br>[coneill@enki lib]$ <br><br>But from the config.log file:<br><br>configure:20412: checking for library containing H5Fopen<br>
configure:20453: mpicc -o conftest -g -O2 -L/home/coneill/hdf5-1.8.4-patch1/hdf5/lib conftest.c >&5<br>/tmp/ccIPa1AD.o: In function `main':<br>/home/coneill/CitcomS-3.1.1/conftest.c:33: undefined reference to `H5Fopen'<br>
collect2: ld returned 1 exit status<br>configure:20459: $? = 1<br><br>I find this strange, I have the library flag pointing to the right place, the H5Fopen libs are there, but its not picking it up in this compile.<br><br>
Any ideas what's happening here?<br><br>cheers<br><br>-Craig.<br><br clear="all"><br>-- <br>Dr Craig O'Neill<br>GEMOC ARC National Key Centre<br>Department of Earth & Planetary Science<br>Macquarie University, E7A, Rm 515<br>
Sydney, NSW, 2109, Australia<br><br>Phone: +61 2 9850 9673<br><a href="http://www.es.mq.edu.au/GEMOC/Participants/AcademManag/CraigOneill/">http://www.es.mq.edu.au/GEMOC/Participants/AcademManag/CraigOneill/</a><br><br>