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Hi Logan,<br>
<br>
You are mixing the C-only binary (CitcomSFull) and the input file
(cookbook3.cfg) for the python-embedded binary. There are only two
input examples (in examples/Full and examples/Regional) for C-only
binary. The rest of cookbook examples are for the python embedded
binary only. The distinction of these two binaries is explained in the
beginning of Chapter 3 in the manual.<br>
<br>
Cheers,<br>
Eh<br>
<br>
<br>
On 7/13/10 10:37 PM, Sankaran, Loganathan (Solution Technology
Services) wrote:
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<p class="MsoNormal"><span
style="font-size: 10pt; font-family: "Arial","sans-serif";">Hello,<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size: 10pt; font-family: "Arial","sans-serif";"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size: 10pt; font-family: "Arial","sans-serif";">I
am new to CitcomS. I just built the code and started a run on a single
node (12 cores) as:<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size: 10pt; font-family: "Arial","sans-serif";">mpirun
-np 4 CitcomSFull cookbook3.cfg >& cbook3.4.out<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size: 10pt; font-family: "Arial","sans-serif";"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size: 10pt; font-family: "Arial","sans-serif";">However,
I get an error such as:<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size: 10pt; font-family: "Arial","sans-serif";">node
0: error: error: either use z_layer for non dim layer depths, or set
num_mat to
four<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size: 10pt; font-family: "Arial","sans-serif";">node
1: error: error: either use z_layer for non dim layer depths, or set
num_mat to
four<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size: 10pt; font-family: "Arial","sans-serif";"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size: 10pt; font-family: "Arial","sans-serif";">The
num_mat is already set to 4 in the cfg file. How do I make this work ?<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size: 10pt; font-family: "Arial","sans-serif";"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size: 10pt; font-family: "Arial","sans-serif";">I
tried the cookbook1 and is asking me to set nodex, nodey which are not
set in
the cfg file.<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size: 10pt; font-family: "Arial","sans-serif";">What
are the recommended values to these and nodez, if needed ?<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size: 10pt; font-family: "Arial","sans-serif";"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size: 10pt; font-family: "Arial","sans-serif";">Thanks.<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size: 10pt; font-family: "Arial","sans-serif";"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size: 10pt; font-family: "Arial","sans-serif";">Logan<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size: 10pt; font-family: "Arial","sans-serif";"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-family: "Britannic Bold","sans-serif"; color: rgb(112, 48, 160);">Logan
Sankaran Ph.D.<b><o:p></o:p></b></span></p>
<p class="MsoNormal"><span style="color: rgb(112, 48, 160);">Sr.
Performance Specialist, HPC
Benchmarking<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(112, 48, 160);">Solution
Technology Services
(STS) <o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(112, 48, 160);">Americas
Shared Solutions
Architecture (SSA)<i><o:p></o:p></i></span></p>
<p class="MsoNormal"><b><span style="color: rgb(112, 48, 160);">Hewlett-Packard
Company <o:p></o:p></span></b></p>
<p class="MsoNormal"><b><span style="color: rgb(112, 48, 160);">PLANO,
Texas, USA<o:p></o:p></span></b></p>
<p class="MsoNormal"><b><span style="color: rgb(112, 48, 160);"><o:p> </o:p></span></b></p>
<p class="MsoNormal"><span
style="font-size: 10pt; font-family: "Futura Bk","sans-serif"; color: rgb(192, 0, 0);"> 972
- 727 - 9561</span><span
style="font-size: 10pt; font-family: "Futura Bk","sans-serif"; color: rgb(34, 30, 31);"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size: 10pt; color: rgb(0, 51, 0);"> <a
moz-do-not-send="true" href="mailto:logan.sankaran@hp.com"><span
style="color: blue;">logan.sankaran@hp.com</span></a></span><span
style="color: rgb(112, 48, 160);"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: black;"><o:p> </o:p></span></p>
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