This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by CitcomS configure2 3.2.0, which was generated by GNU Autoconf 2.68. Invocation command line was $ ./configure2 ## --------- ## ## Platform. ## ## --------- ## hostname = BAS-306SCAN-D1 uname -m = i686 uname -r = 1.7.15(0.260/5/3) uname -s = CYGWIN_NT-5.1 uname -v = 2012-05-09 10:25 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = i686 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/local/bin PATH: /usr/bin PATH: /cygdrive/c/Program Files/Silverfrost/FTN95 PATH: /cygdrive/c/WINDOWS/system32 PATH: /cygdrive/c/WINDOWS PATH: /cygdrive/c/WINDOWS/System32/Wbem PATH: /cygdrive/c/WINDOWS/system32/nls PATH: /cygdrive/c/WINDOWS/system32/nls/ENGLISH PATH: /cygdrive/c/Program Files/Novell/ZENworks PATH: /cygdrive/c/Program Files/QuickTime/QTSystem PATH: /cygdrive/c/programs/GMT/bin PATH: /cygdrive/c/programs/GMT/bin PATH: /cygdrive/c/programs/GMT/bin PATH: /cygdrive/c/Program Files/GnuWin32/bin PATH: /cygdrive/c/gut-2.0/bin PATH: /cygdrive/c/win32app/salford PATH: /cygdrive/c/programs/GMT/bin PATH: Z PATH: . PATH: Y PATH: . ## ----------- ## ## Core tests. ## ## ----------- ## configure2:2564: checking for a BSD-compatible install configure2:2632: result: /usr/bin/install -c configure2:2643: checking whether build environment is sane configure2:2693: result: yes configure2:2721: WARNING: `missing' script is too old or missing configure2:2834: checking for a thread-safe mkdir -p configure2:2873: result: /usr/bin/mkdir -p configure2:2886: checking for gawk configure2:2902: found /usr/bin/gawk configure2:2913: result: gawk configure2:2924: checking whether make sets $(MAKE) configure2:2946: result: yes configure2:3170: checking for mpicc configure2:3200: result: no configure2:3170: checking for hcc configure2:3200: result: no configure2:3170: checking for mpcc configure2:3200: result: no configure2:3170: checking for mpcc_r configure2:3200: result: no configure2:3170: checking for mpxlc configure2:3200: result: no configure2:3170: checking for cmpicc configure2:3200: result: no configure2:3170: checking for gcc configure2:3186: found /usr/bin/gcc configure2:3197: result: gcc configure2:3228: checking for C compiler version configure2:3237: gcc --version >&5 gcc (GCC) 3.4.4 (cygming special, gdc 0.12, using dmd 0.125) Copyright (C) 2004 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure2:3248: $? = 0 configure2:3237: gcc -v >&5 Reading specs from /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs Configured with: /managed/gcc-build/final-v3-bootstrap/gcc-3.4.4-999/configure --verbose --program-suffix=-3 --prefix=/usr --exec-prefix=/usr --sysconfdir=/etc --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-languages=c,ada,c++,d,f77,pascal,java,objc --enable-nls --without-included-gettext --enable-version-specific-runtime-libs --without-x --enable-libgcj --disable-java-awt --with-system-zlib --enable-interpreter --disable-libgcj-debug --enable-threads=posix --enable-java-gc=boehm --disable-win32-registry --enable-sjlj-exceptions --enable-hash-synchronization --enable-libstdcxx-debug Thread model: posix gcc version 3.4.4 (cygming special, gdc 0.12, using dmd 0.125) configure2:3248: $? = 0 configure2:3237: gcc -V >&5 gcc: `-V' option must have argument configure2:3248: $? = 1 configure2:3237: gcc -qversion >&5 gcc: unrecognized option `-qversion' gcc: no input files configure2:3248: $? = 1 configure2:3268: checking whether the C compiler works configure2:3290: gcc conftest.c >&5 configure2:3294: $? = 0 configure2:3342: result: yes configure2:3345: checking for C compiler default output file name configure2:3347: result: a.exe configure2:3353: checking for suffix of executables configure2:3360: gcc -o conftest.exe conftest.c >&5 configure2:3364: $? = 0 configure2:3386: result: .exe configure2:3408: checking whether we are cross compiling configure2:3416: gcc -o conftest.exe conftest.c >&5 configure2:3420: $? = 0 configure2:3427: ./conftest.exe configure2:3431: $? = 0 configure2:3446: result: no configure2:3451: checking for suffix of object files configure2:3473: gcc -c conftest.c >&5 configure2:3477: $? = 0 configure2:3498: result: o configure2:3502: checking whether we are using the GNU C compiler configure2:3521: gcc -c conftest.c >&5 configure2:3521: $? = 0 configure2:3530: result: yes configure2:3539: checking whether gcc accepts -g configure2:3559: gcc -c -g conftest.c >&5 configure2:3559: $? = 0 configure2:3600: result: yes configure2:3617: checking for gcc option to accept ISO C89 configure2:3681: gcc -c -g -O2 conftest.c >&5 configure2:3681: $? = 0 configure2:3694: result: none needed configure2:3725: checking for style of include used by make configure2:3753: result: GNU configure2:3779: checking dependency style of gcc configure2:3890: result: none configure2:3963: checking for mpicxx configure2:3993: result: no configure2:3963: checking for mpic++ configure2:3993: result: no configure2:3963: checking for mpiCC configure2:3993: result: no configure2:3963: checking for hcp configure2:3993: result: no configure2:3963: checking for mpCC configure2:3993: result: no configure2:3963: checking for mpxlC configure2:3993: result: no configure2:3963: checking for mpxlC_r configure2:3993: result: no configure2:3963: checking for cmpic++ configure2:3993: result: no configure2:3963: checking for g++ configure2:3979: found /usr/bin/g++ configure2:3990: result: g++ configure2:4017: checking for C++ compiler version configure2:4026: g++ --version >&5 g++ (GCC) 3.4.4 (cygming special, gdc 0.12, using dmd 0.125) Copyright (C) 2004 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure2:4037: $? = 0 configure2:4026: g++ -v >&5 Reading specs from /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs Configured with: /managed/gcc-build/final-v3-bootstrap/gcc-3.4.4-999/configure --verbose --program-suffix=-3 --prefix=/usr --exec-prefix=/usr --sysconfdir=/etc --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-languages=c,ada,c++,d,f77,pascal,java,objc --enable-nls --without-included-gettext --enable-version-specific-runtime-libs --without-x --enable-libgcj --disable-java-awt --with-system-zlib --enable-interpreter --disable-libgcj-debug --enable-threads=posix --enable-java-gc=boehm --disable-win32-registry --enable-sjlj-exceptions --enable-hash-synchronization --enable-libstdcxx-debug Thread model: posix gcc version 3.4.4 (cygming special, gdc 0.12, using dmd 0.125) configure2:4037: $? = 0 configure2:4026: g++ -V >&5 g++: `-V' option must have argument configure2:4037: $? = 1 configure2:4026: g++ -qversion >&5 g++: unrecognized option `-qversion' g++: no input files configure2:4037: $? = 1 configure2:4041: checking whether we are using the GNU C++ compiler configure2:4060: g++ -c conftest.cpp >&5 configure2:4060: $? = 0 configure2:4069: result: yes configure2:4078: checking whether g++ accepts -g configure2:4098: g++ -c -g conftest.cpp >&5 configure2:4098: $? = 0 configure2:4139: result: yes configure2:4164: checking dependency style of g++ configure2:4275: result: none configure2:4298: checking how to run the C preprocessor configure2:4329: gcc -E conftest.c configure2:4329: $? = 0 configure2:4343: gcc -E conftest.c conftest.c:11:28: ac_nonexistent.h: No such file or directory configure2:4343: $? = 1 configure2: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "CitcomS" | #define PACKAGE_TARNAME "CitcomS" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "CitcomS 3.2.0" | #define PACKAGE_BUGREPORT "cig-mc@geodynamics.org" | #define PACKAGE_URL "" | #define PACKAGE "CitcomS" | #define VERSION "3.2.0" | /* end confdefs.h. */ | #include configure2:4368: result: gcc -E configure2:4388: gcc -E conftest.c configure2:4388: $? = 0 configure2:4402: gcc -E conftest.c conftest.c:11:28: ac_nonexistent.h: No such file or directory configure2:4402: $? = 1 configure2: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "CitcomS" | #define PACKAGE_TARNAME "CitcomS" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "CitcomS 3.2.0" | #define PACKAGE_BUGREPORT "cig-mc@geodynamics.org" | #define PACKAGE_URL "" | #define PACKAGE "CitcomS" | #define VERSION "3.2.0" | /* end confdefs.h. */ | #include configure2:4431: checking for grep that handles long lines and -e configure2:4489: result: /usr/bin/grep configure2:4494: checking for egrep configure2:4556: result: /usr/bin/grep -E configure2:4561: checking for ANSI C header files configure2:4581: gcc -c -g -O2 conftest.c >&5 configure2:4581: $? = 0 configure2:4654: gcc -o conftest.exe -g -O2 conftest.c >&5 configure2:4654: $? = 0 configure2:4654: ./conftest.exe configure2:4654: $? = 0 configure2:4665: result: yes configure2:4678: checking for sys/types.h configure2:4678: gcc -c -g -O2 conftest.c >&5 configure2:4678: $? = 0 configure2:4678: result: yes configure2:4678: checking for sys/stat.h configure2:4678: gcc -c -g -O2 conftest.c >&5 configure2:4678: $? = 0 configure2:4678: result: yes configure2:4678: checking for stdlib.h configure2:4678: gcc -c -g -O2 conftest.c >&5 configure2:4678: $? = 0 configure2:4678: result: yes configure2:4678: checking for string.h configure2:4678: gcc -c -g -O2 conftest.c >&5 configure2:4678: $? = 0 configure2:4678: result: yes configure2:4678: checking for memory.h configure2:4678: gcc -c -g -O2 conftest.c >&5 configure2:4678: $? = 0 configure2:4678: result: yes configure2:4678: checking for strings.h configure2:4678: gcc -c -g -O2 conftest.c >&5 configure2:4678: $? = 0 configure2:4678: result: yes configure2:4678: checking for inttypes.h configure2:4678: gcc -c -g -O2 conftest.c >&5 configure2:4678: $? = 0 configure2:4678: result: yes configure2:4678: checking for stdint.h configure2:4678: gcc -c -g -O2 conftest.c >&5 configure2:4678: $? = 0 configure2:4678: result: yes configure2:4678: checking for unistd.h configure2:4678: gcc -c -g -O2 conftest.c >&5 configure2:4678: $? = 0 configure2:4678: result: yes configure2:4692: checking malloc.h usability configure2:4692: gcc -c -g -O2 conftest.c >&5 configure2:4692: $? = 0 configure2:4692: result: yes configure2:4692: checking malloc.h presence configure2:4692: gcc -E conftest.c configure2:4692: $? = 0 configure2:4692: result: yes configure2:4692: checking for malloc.h configure2:4692: result: yes configure2:5308: error: cannot run /bin/sh ./aux-config/config.sub ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_c_compiler_gnu=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_HC_HOME_set= ac_cv_env_HC_HOME_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_PHDF5_HOME_set= ac_cv_env_PHDF5_HOME_value= ac_cv_env_PYTHONPATH_set=set ac_cv_env_PYTHONPATH_value='C:\Program Files\ArcGIS\bin' ac_cv_env_PYTHON_set= ac_cv_env_PYTHON_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_exeext=.exe ac_cv_header_inttypes_h=yes ac_cv_header_malloc_h=yes ac_cv_header_memory_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_objext=o ac_cv_path_EGREP='/usr/bin/grep -E' ac_cv_path_GREP=/usr/bin/grep ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/usr/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP='gcc -E' ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_make_make_set=yes am_cv_CC_dependencies_compiler_type=none am_cv_CXX_dependencies_compiler_type=none ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='aclocal-1.11' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='tar' AR='' AUTOCONF='autoconf' AUTOHEADER='autoheader' AUTOMAKE='automake-1.11' AWK='gawk' CC='gcc' CCDEPMODE='depmode=none' CFLAGS='-g -O2' COND_CUDA_FALSE='' COND_CUDA_TRUE='#' COND_EMBEDDING_FALSE='#' COND_EMBEDDING_TRUE='' COND_EXCHANGER_FALSE='' COND_EXCHANGER_TRUE='' COND_GGRD_FALSE='' COND_GGRD_TRUE='#' COND_HDF5_FALSE='' COND_HDF5_TRUE='' COND_PYRE_FALSE='' COND_PYRE_TRUE='#' CPP='gcc -E' CPPFLAGS='' CXX='g++' CXXCPP='' CXXDEPMODE='depmode=none' CXXFLAGS='-g -O2' CYGPATH_W='cygpath -w' DEFS='' DEPDIR='.deps' DLLTOOL='' DSYMUTIL='' DUMPBIN='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/usr/bin/grep -E' EXEEXT='.exe' FGREP='' GREP='/usr/bin/grep' HC_HOME='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LD='' LDFLAGS='' LIBOBJS='' LIBS='' LIBTOOL='' LIPO='' LN_S='' LTLIBOBJS='' MAKEINFO='makeinfo' MANIFEST_TOOL='' MKDIR_P='/usr/bin/mkdir -p' NM='' NMEDIT='' OBJDUMP='' OBJEXT='o' OTOOL64='' OTOOL='' PACKAGE='CitcomS' PACKAGE_BUGREPORT='cig-mc@geodynamics.org' PACKAGE_NAME='CitcomS' PACKAGE_STRING='CitcomS 3.2.0' PACKAGE_TARNAME='CitcomS' PACKAGE_URL='' PACKAGE_VERSION='3.2.0' PATH_SEPARATOR=':' PHDF5_HOME='' PYCONFIG='' PYTHON='' PYTHONPATH='C:\Program Files\ArcGIS\bin' PYTHON_BLDLIBRARY='' PYTHON_EGG_CFLAGS='' PYTHON_EGG_CPPFLAGS='' PYTHON_EGG_LDFLAGS='' PYTHON_EGG_LIBS='' PYTHON_EGG_PYXFLAGS='' PYTHON_EXEC_PREFIX='' PYTHON_INCDIR='' PYTHON_LA_LDFLAGS='' PYTHON_LDFLAGS='' PYTHON_LDLAST='' PYTHON_LDLIBRARY='' PYTHON_LIBDIR='' PYTHON_LIBP='' PYTHON_LIBPL='' PYTHON_LIBS='' PYTHON_LINKFORSHARED='' PYTHON_MODLIBS='' PYTHON_PLATFORM='' PYTHON_PREFIX='' PYTHON_SYSLIBS='' PYTHON_VERSION='' RANLIB='' SED='' SET_MAKE='' SHELL='/bin/sh' STRIP='' VERSION='3.2.0' ac_ct_AR='' ac_ct_CC='gcc' ac_ct_CXX='g++' ac_ct_DUMPBIN='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='' am__fastdepCC_FALSE='' am__fastdepCC_TRUE='#' am__fastdepCXX_FALSE='' am__fastdepCXX_TRUE='#' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='_no' am__quote='' am__tar='${AMTAR} chof - "$$tardir"' am__untar='${AMTAR} xf -' bindir='${exec_prefix}/bin' build='' build_alias='' build_cpu='' build_os='' build_vendor='' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host='' host_alias='' host_cpu='' host_os='' host_vendor='' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /cygdrive/c/CitcomS/src/CitcomS-3.2.0/aux-config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='/usr/bin/mkdir -p' oldincludedir='/usr/include' pdfdir='${docdir}' pkgpyexecdir='' pkgpythondir='' pkgsysconfdir='' prefix='NONE' program_transform_name='s,x,x,' psdir='${docdir}' pyexecdir='' pythondir='' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "CitcomS" #define PACKAGE_TARNAME "CitcomS" #define PACKAGE_VERSION "3.2.0" #define PACKAGE_STRING "CitcomS 3.2.0" #define PACKAGE_BUGREPORT "cig-mc@geodynamics.org" #define PACKAGE_URL "" #define PACKAGE "CitcomS" #define VERSION "3.2.0" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_MALLOC_H 1 configure2: exit 2