<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
<html>
<head>
<meta content="text/html;charset=ISO-8859-1" http-equiv="Content-Type">
</head>
<body bgcolor="#ffffff" text="#000000">
Oliver,<br>
<br>
I'm guessing that the 'libstdc++.so.6' that is being picked up by the
runtime linker on the compute nodes is incompatible with the
'libstdc++.so.6' which you linked against when you built PyLith on the
head/login node.<br>
<br>
Please send the output of the following commands (on the head node):<br>
<br>
echo $LD_LIBRARY_PATH<br>
ldd /data/Software/Store/pylith3d-0.8.2/pylith3d/pypylith3d<br>
ldd /data/Software/Store/pylith3d-0.8.2/pylith3d/mpipypylith3d<br>
<br>
The output will help me further diagnose the problem. (Hopefully, a
compatible 'libstdc++.so.6' is installed somewhere on the compute
nodes, and the runtime linker is simply finding the wrong one.)<br>
<br>
--Leif<br>
<br>
<br>
<br>
Oliver Boyd wrote:
<blockquote cite="mid006d01c7af9d$96c8b250$c45a16f0$@gov" type="cite">
<meta http-equiv="Content-Type" content="text/html; ">
<meta name="Generator" content="Microsoft Word 12 (filtered medium)">
<style>
<!--
/* Font Definitions */
@font-face
{font-family:Calibri;
panose-1:2 15 5 2 2 2 4 3 2 4;}
/* Style Definitions */
p.MsoNormal, li.MsoNormal, div.MsoNormal
{margin:0in;
margin-bottom:.0001pt;
font-size:11.0pt;
font-family:"Calibri","sans-serif";}
a:link, span.MsoHyperlink
{mso-style-priority:99;
color:blue;
text-decoration:underline;}
a:visited, span.MsoHyperlinkFollowed
{mso-style-priority:99;
color:purple;
text-decoration:underline;}
span.EmailStyle17
{mso-style-type:personal-compose;
font-family:"Calibri","sans-serif";
color:windowtext;}
.MsoChpDefault
{mso-style-type:export-only;}
@page Section1
{size:8.5in 11.0in;
margin:1.0in 1.0in 1.0in 1.0in;}
div.Section1
{page:Section1;}
-->
</style>
<!--[if gte mso 9]><xml>
<o:shapedefaults v:ext="edit" spidmax="1026" />
</xml><![endif]--><!--[if gte mso 9]><xml>
<o:shapelayout v:ext="edit">
<o:idmap v:ext="edit" data="1" />
</o:shapelayout></xml><![endif]-->
<div class="Section1">
<p class="MsoNormal">When using the pylith3d-np2.cfg file, I get the
following error:<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">/data/Software/Store/pylith3d-0.8.2/pylith3d/mpipypylith3d:
/usr/lib/../lib64/libstdc++.so.6: version `CXXABI_1.3.1' not found
(required by
/data/Software/Store/pylith3d-0.8.2/pylith3d/mpipypylith3d)<o:p></o:p></p>
<p class="MsoNormal">p0_2621: p4_error: Child process exited while
making
connection to remote process on compute-0-1.local: 0<o:p></o:p></p>
<p class="MsoNormal">p0_2621: (2.343750) net_send: could not write to
fd=4, errno
= 32<o:p></o:p></p>
<p class="MsoNormal">--pyre-start: mpirun: exit 1<o:p></o:p></p>
<p class="MsoNormal">/data/Software/PyLith-0.8.2/pylith3dapp.py:
/data/Software/Store/pylith3d-0.8.2/pylith3d/pypylith3d: exit 1<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I also get a very similar error submitting a
single
processor job to the sun grid engine:<o:p></o:p></p>
<p class="MsoNormal">/data/Software/Store/pylith3d-0.8.2/pylith3d/pypylith3d:
/usr/lib/../lib64/libstdc++.so.6: version `CXXABI_1.3.1' not found
(required by
/data/Software/Store/pylith3d-0.8.2/pylith3d/pypylith3d)<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Thanks for your help,<o:p></o:p></p>
<p class="MsoNormal">Oliver<o:p></o:p></p>
</div>
<pre wrap="">
<hr size="4" width="90%">
_______________________________________________
CIG-SHORT mailing list
<a class="moz-txt-link-abbreviated" href="mailto:CIG-SHORT@geodynamics.org">CIG-SHORT@geodynamics.org</a>
<a class="moz-txt-link-freetext" href="http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short">http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short</a>
</pre>
</blockquote>
<br>
</body>
</html>