<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Ikuo,<div><br></div><div>Were you using the examples from PyLith 1.4.2, or the examples from the svn repository? I just pulled and rebuilt PyLith, and then ran 'pylith dislocation.cfg' in examples/3d/hex8, and it ran with no problem. If you're using the older examples, it's possible that something changed.</div><div><br></div><div>Charles</div><div><br></div><div><br><div><div>On 11/03/2010, at 6:57 PM, Ikuo Cho wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div>Brad,<br><br>I was able to install pylith repository version following your advise.<br>Now I wonder if the parameters for pylith developing version changed extensively from those for the released version.<br>Actually, I tried to run the examples in the directory pylith/examples/3d/hex8, but failed.<br>The attached file "typescript" is an example of the messages output from<br>pylith when I tried to run pylith by typing:<br><br>pylith savageprescott.cfg.<br><br>I wanted to make sure if these messages mean extensive changes in the<br>parameters for pylith (and my instllation was succesful).<br><br>Ikuo Cho<br><br>On Fri, 05 Mar 2010 08:23:48 -0800<br>Brad Aagaard <<a href="mailto:baagaard@usgs.gov">baagaard@usgs.gov</a>> wrote:<br><br><blockquote type="cite">Ikuo-<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">If you build from the repository (applies to both spatialdata and <br></blockquote><blockquote type="cite">pylith), you need to configure with the --enable-swig flag. You will <br></blockquote><blockquote type="cite">also need to have a recent version of swig installed (I think 1.3.33 or <br></blockquote><blockquote type="cite">later, configure will check this). The source tarball contains the swig <br></blockquote><blockquote type="cite">generated files (*_wrap.cxx) , but the repository does not.<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Brad<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">On 3/4/10 10:04 PM, Ikuo Cho wrote:<br></blockquote><blockquote type="cite"><blockquote type="cite">Charles,<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">If I'm understanding your question correctly,<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">You understand my question correctly. Thank you for your suggestion.<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">or you can check out the version from the subversion repository.<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">I checked out the latest version of pylith and petsc from the subversion<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">repository (March 4, 2010). I tried to install them, only to fail at a<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">later stage:<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">*******************************************************************<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Making install in bc<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">make[2]: Entering directory `/work6/cho/pylith.srccompiled/Shoyu.1.4.2.dev20100304/pylith/modulesrc/bc'<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">make[2]: *** No rule to make target `bc_wrap.cxx', needed by `bc_wrap.lo'. Stop.<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">make[2]: Leaving directory `/work6/cho/pylith.srccompiled/Shoyu.1.4.2.dev20100304/pylith/modulesrc/bc'<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">make[1]: *** [install-recursive] Error 1<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">make[1]: Leaving directory `/work6/cho/pylith.srccompiled/Shoyu.1.4.2.dev20100304/pylith/modulesrc'<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">make: *** [install-recursive] Error 1<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">*******************************************************************<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Is it a problem that I use automake 1.9.2, autoreconf 2.61 and<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">libtoolize 1.5.6? (those recommended were automake 1.9.6 and libtoolize<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">1.5.22.) Attached files are make.log and config.log that were created<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">when I tried to install pylith. I would be happy if you tell me what was<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">wrong. All the installations other than pylith were finished<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">correctly including petsc-dev, which was also checked out from the<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">repositry by hg clone.<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">By the way, I was able to compile the pylith 1.4.2 from the source code that<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">was downloadable from the web site<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><a href="http://www.geodynamics.org/cig/software/packages/short/pylith">http://www.geodynamics.org/cig/software/packages/short/pylith</a>.<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Actually, I confirmed that it runs correctly in terms of an example<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">problem (dislocation.cfg). I took the same procedure and same sets of<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">environmental variables when I tried to install the current version<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">under development.<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Ikuo Cho<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">On Fri, 26 Feb 2010 07:26:00 +1300<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Charles Williams<<a href="mailto:willic3@gmail.com">willic3@gmail.com</a>> wrote:<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Dear Ikuo Cho,<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">If I'm understanding your question correctly, you will not be able to do what you are planning with the current released version of PyLith (1.4.2). In that version, it is not possible to spatially vary the power-law parameters. The reason is what you have already noticed -- the power-law-coefficient units are dependent on the power-law-exponent. This is a problem in most power-law implementations, and this has been fixed (but not extensively tested) in the version of the code we're working on now. We have changed the specification so that power-law materials now require 3 parameters -- a reference stress, a reference strain rate, and the power-law exponent. This makes the units constant, and you can therefore have spatial variations in these parameters.<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Right now, you have two options to solve your problem. You can either define a separate material for each set of parameters using the current version of the code, or you can check out the version from the subversion repository. The documentation in the repository has been updated to reflect the changes in the power-law implementation, but we have not yet put in documentation for the example problem. I think it will be at least a month or two before our next release, so those are your only options for now.<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">I hope this has answered your question. Good luck with your modeling, and please e-mail back with any questions you might have.<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Cheers,<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Charles<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">On 25/02/2010, at 10:44 PM, Ikuo Cho wrote:<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Dear Pylith Developers:<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">I have a question on a description of the parameter<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">power-law-coefficient in a spatial database: Does the dimension corresponding to the power-law-coefficient have a<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">meaning? I'm asking this because I want to solve a problem of spatially variable power-law exponents.<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">More concretely, is the following description correct or not?<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">0. 0. 0. 2500. 3000. 5500 1.e-37 3.0<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">0. 0. 20. 2500. 3000. 5500 1.e-37 2.0<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">with<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">value-names = density vs vp power-law-coefficient power-law-exponent<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">value-units= kg/m**3 m/s m/s Pa**(-3.0)/s None<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">when the flow law is given as<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">(strain rate) = At (stress)**3.0, where At=1.e-37 [Pa**(-3.0)/s], at<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">(x,y,z)=(0,0,0)<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">and<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">(strain rate) = At (stress)**2.0, where At=1.e-37 [Pa**(-2.0)/s], at<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">(x,y,z)=(0,0,20).<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Ikuo Cho<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">----------------------------------------------------------<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Geological Survey of Japan,<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">National Institute of Advanced Industrial Science and Technology<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Tsukuba Central 7, Tsukuba 305-8567 Japan<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Tel +81-29-861-3891, Fax +81-29-861-3682<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">----------------------------------------------------------<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">_______________________________________________<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">CIG-SHORT mailing list<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><a href="mailto:CIG-SHORT@geodynamics.org">CIG-SHORT@geodynamics.org</a><br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><a href="http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short">http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short</a><br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Charles A. Williams<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Scientist<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">GNS Science<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">1 Fairway Drive, Avalon<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">PO Box 30368<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Lower Hutt 5040<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">New Zealand<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">ph (office): 0064-4570-4566<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">fax (office): 0064-4570-4600<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><a href="mailto:C.Williams@gns.cri.nz">C.Williams@gns.cri.nz</a><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">NOTE NEW E-MAIL ADDRESS<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">_______________________________________________<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">CIG-SHORT mailing list<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><a href="mailto:CIG-SHORT@geodynamics.org">CIG-SHORT@geodynamics.org</a><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><a href="http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short">http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short</a><br></blockquote></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">_______________________________________________<br></blockquote><blockquote type="cite">CIG-SHORT mailing list<br></blockquote><blockquote type="cite"><a href="mailto:CIG-SHORT@geodynamics.org">CIG-SHORT@geodynamics.org</a><br></blockquote><blockquote type="cite"><a href="http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short">http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short</a><br></blockquote><br><br>$BD9!!0jIW(B (Ikuo Cho)<br>----------------------------------------------------------<br>$BFHN)9T@/K!?M!!;:6H5;=QAm9g8&5f=j(B<br>$B3hCGAX!&CO?L8&5f%;%s%?!<!!CO?LH/@85!9=8&5f%A!<%`(B<br>$B")(B305-8567$B!!$D$/$P;TEl(B1-1-1$B!!$D$/$PCf1{Bh<7(B<br>Tel 029-861-3891<br> 029-861-3688,3534($B$D$J$,$i$J$$>l9g$O$3$A$iKx(B)<br>Fax 029-861-3682, e-mail <a href="mailto:ikuo-chou@aist.go.jp">ikuo-chou@aist.go.jp</a><br>Homepage <a href="http://staff.aist.go.jp/ikuo-chou">http://staff.aist.go.jp/ikuo-chou</a> <br>----------------------------------------------------------<br><span><typescript></span>_______________________________________________<br>CIG-SHORT mailing list<br><a href="mailto:CIG-SHORT@geodynamics.org">CIG-SHORT@geodynamics.org</a><br>http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short<br></div></blockquote></div><br><div>
<span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="3" style="font: normal normal normal 12px/normal Helvetica; ">Charles A. Williams</font></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Scientist<br>GNS Science<br>1 Fairway Drive, Avalon<br>PO Box 30368<br>Lower Hutt 5040<br>New Zealand<br>ph (office): 0064-4570-4566<br>fax (office): 0064-4570-4600</div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><a href="mailto:C.Williams@gns.cri.nz">C.Williams@gns.cri.nz</a></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">NOTE NEW E-MAIL ADDRESS</div></div></span>
</div>
<br></div></body></html>