Something is quite wrong here because you have no PETSc include path at all in that<div>compile. How did you install PETSc?</div><div><br></div><div> Matt<br><br><div class="gmail_quote">On Wed, Oct 20, 2010 at 4:12 PM, Jeffrey Thompson <span dir="ltr"><<a href="mailto:jeffremt@gmail.com">jeffremt@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">Hello CIG-Short,<br><br>I'm trying to make and install the stable version of Pylith, and I ran into the error below after issuing the "make" command. It seems to me that the main error is that Pylith cannot find the petscmesh.hh file. I updated PETSc and spatialdata before Pylith, so I should have the most recent versions of these programs. I also tried installing the version Pylith from the trunk directory, and the same error occured. I've attached my config.log file from the 'stable' pylith install.<br>
<br>Thanks in advance,<br>Jeff Thompson<br>Seismolab<br>California Institute of Technology<br><br>make[3]: Entering directory `/home/jeffremt/tools/cig/v1.5-stable/libsrc'<br>if /bin/sh ../libtool --mode=compile --tag=CXX g++ -DHAVE_CONFIG_H -I. -I. -I.. -I../include -I/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/pythia-0.8.1.11-py2.5.egg -I/usr/include/python2.5 -DENABLE_CUBIT -I/home/jeffremt/tools/proj-4.7.0/gcc-4.1.1_64/include -I/home/jeffremt/tools/cppunit-1.12.1/gcc-4.1.1_64/include -I/home/jeffremt/tools/cig/gcc-4.1.1_64/include -I/home/jeffremt/tools/cig/gcc-4.1.1_64/include/pythia-0.8.1.10 -I/home/jeffremt/tools/netcdf-4.0.1/gcc-4.1.1_64/include -g -O2 -MT BoundaryCondition.lo -MD -MP -MF ".deps/BoundaryCondition.Tpo" -c -o BoundaryCondition.lo `test -f 'bc/BoundaryCondition.cc' || echo './'`bc/BoundaryCondition.cc; \<br>
then mv -f ".deps/BoundaryCondition.Tpo" ".deps/BoundaryCondition.Plo"; else rm -f ".deps/BoundaryCondition.Tpo"; exit 1; fi<br>mkdir .libs<br> g++ -DHAVE_CONFIG_H -I. -I. -I.. -I../include -I/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/pythia-0.8.1.11-py2.5.egg -I/usr/include/python2.5 -DENABLE_CUBIT -I/home/jeffremt/tools/proj-4.7.0/gcc-4.1.1_64/include -I/home/jeffremt/tools/cppunit-1.12.1/gcc-4.1.1_64/include -I/home/jeffremt/tools/cig/gcc-4.1.1_64/include -I/home/jeffremt/tools/cig/gcc-4.1.1_64/include/pythia-0.8.1.10 -I/home/jeffremt/tools/netcdf-4.0.1/gcc-4.1.1_64/include -g -O2 -MT BoundaryCondition.lo -MD -MP -MF .deps/BoundaryCondition.Tpo -c bc/BoundaryCondition.cc -fPIC -DPIC -o .libs/BoundaryCondition.o<br>
In file included from bc/BoundaryCondition.cc:23:<br>../include/pylith/topology/Mesh.hh:33:43: petscmesh.hh: No such file or directory<br>In file included from bc/BoundaryCondition.cc:23:<br>../include/pylith/topology/Mesh.hh:59: error: `ALE' has not been declared<br>
../include/pylith/topology/Mesh.hh:59: error: ISO C++ forbids declaration of `IMesh' with no type<br>../include/pylith/topology/Mesh.hh:59: error: expected `;' before '<' token<br>../include/pylith/topology/Mesh.hh:60: error: `SieveMesh' has not been declared<br>
../include/pylith/topology/Mesh.hh:60: error: ISO C++ forbids declaration of `real_section_type' with no type<br>../include/pylith/topology/Mesh.hh:60: error: expected `;' before "RealSection"<br>../include/pylith/topology/Mesh.hh:61: error: `SieveMesh' has not been declared<br>
../include/pylith/topology/Mesh.hh:61: error: ISO C++ forbids declaration of `int_section_type' with no type<br>../include/pylith/topology/Mesh.hh:61: error: expected `;' before "IntSection"<br>../include/pylith/topology/Mesh.hh:62: error: `ALE' has not been declared<br>
../include/pylith/topology/Mesh.hh:62: error: ISO C++ forbids declaration of `IMesh' with no type<br>../include/pylith/topology/Mesh.hh:62: error: expected `;' before '<' token<br>../include/pylith/topology/Mesh.hh:63: error: `ALE' has not been declared<br>
../include/pylith/topology/Mesh.hh:63: error: ISO C++ forbids declaration of `RestrictVisitor' with no type<br>../include/pylith/topology/Mesh.hh:63: error: expected `;' before '<' token<br>../include/pylith/topology/Mesh.hh:64: error: `ALE' has not been declared<br>
../include/pylith/topology/Mesh.hh:64: error: ISO C++ forbids declaration of `UpdateAddVisitor' with no type<br>../include/pylith/topology/Mesh.hh:64: error: expected `;' before '<' token<br>../include/pylith/topology/Mesh.hh:65: error: `ALE' has not been declared<br>
../include/pylith/topology/Mesh.hh:65: error: ISO C++ forbids declaration of `UpdateAllVisitor' with no type<br>../include/pylith/topology/Mesh.hh:65: error: expected `;' before '<' token<br>../include/pylith/topology/Mesh.hh:66: error: `ALE' has not been declared<br>
../include/pylith/topology/Mesh.hh:66: error: ISO C++ forbids declaration of `IndicesVisitor' with no type<br>../include/pylith/topology/Mesh.hh:66: error: expected `;' before '<' token<br>../include/pylith/topology/Mesh.hh:82: error: expected `,' or `...' before '&' token<br>
../include/pylith/topology/Mesh.hh:82: error: ISO C++ forbids declaration of `MPI_Comm' with no type<br>../include/pylith/topology/Mesh.hh:100: error: `ALE' has not been declared<br>../include/pylith/topology/Mesh.hh:100: error: ISO C++ forbids declaration of `Obj' with no type<br>
../include/pylith/topology/Mesh.hh:100: error: expected `;' before '<' token<br>../include/pylith/topology/Mesh.hh:106: error: `ALE' has not been declared<br>../include/pylith/topology/Mesh.hh:106: error: ISO C++ forbids declaration of `Obj' with no type<br>
../include/pylith/topology/Mesh.hh:106: error: expected `;' before '<' token<br>../include/pylith/topology/Mesh.hh:160: error: expected `,' or `...' before "value"<br>../include/pylith/topology/Mesh.hh:160: error: ISO C++ forbids declaration of `MPI_Comm' with no type<br>
../include/pylith/topology/Mesh.hh:166: error: `MPI_Comm' does not name a type<br>../include/pylith/topology/Mesh.hh:195: error: `ALE' has not been declared<br>../include/pylith/topology/Mesh.hh:195: error: ISO C++ forbids declaration of `Obj' with no type<br>
../include/pylith/topology/Mesh.hh:195: error: expected `;' before '<' token<br>../include/pylith/topology/Mesh.hh:197: error: `MPI_Comm' does not name a type<br>In file included from ../include/pylith/topology/Mesh.hh:208,<br>
from bc/BoundaryCondition.cc:23:<br>../include/pylith/topology/Mesh.icc:25: error: `ALE' has not been declared<br>../include/pylith/topology/Mesh.icc:25: error: expected initializer before '<' token<br>
../include/pylith/topology/Mesh.icc:32: error: `ALE' has not been declared<br>../include/pylith/topology/Mesh.icc:32: error: expected initializer before '<' token<br>../include/pylith/topology/Mesh.icc: In member function `void pylith::topology::Mesh::debug(bool)':<br>
../include/pylith/topology/Mesh.icc:49: error: `_mesh' was not declared in this scope<br>../include/pylith/topology/Mesh.icc: In member function `int pylith::topology::Mesh::dimension() const':<br>../include/pylith/topology/Mesh.icc:64: error: `_mesh' was not declared in this scope<br>
../include/pylith/topology/Mesh.icc: In member function `int pylith::topology::Mesh::coneSize() const':<br>../include/pylith/topology/Mesh.icc:71: error: `_mesh' was not declared in this scope<br>../include/pylith/topology/Mesh.icc: In member function `int pylith::topology::Mesh::numVertices() const':<br>
../include/pylith/topology/Mesh.icc:78: error: `_mesh' was not declared in this scope<br>../include/pylith/topology/Mesh.icc: In member function `int pylith::topology::Mesh::numCells() const':<br>../include/pylith/topology/Mesh.icc:85: error: `_mesh' was not declared in this scope<br>
../include/pylith/topology/Mesh.icc: At global scope:<br>../include/pylith/topology/Mesh.icc:91: error: expected `,' or `...' before "value"<br>../include/pylith/topology/Mesh.icc:91: error: ISO C++ forbids declaration of `MPI_Comm' with no type<br>
../include/pylith/topology/Mesh.icc: In member function `void pylith::topology::Mesh::comm(int)':<br>../include/pylith/topology/Mesh.icc:92: error: `_comm' was not declared in this scope<br>../include/pylith/topology/Mesh.icc:92: error: `value' was not declared in this scope<br>
../include/pylith/topology/Mesh.icc: At global scope:<br>../include/pylith/topology/Mesh.icc:97: error: `MPI_Comm' does not name a type<br>../include/pylith/topology/Mesh.icc: In member function `void pylith::topology::Mesh::view(const char*) const':<br>
../include/pylith/topology/Mesh.icc:106: error: `_mesh' was not declared in this scope<br>bc/BoundaryCondition.cc: In member function `virtual void pylith::bc::BoundaryCondition::verifyConfiguration(const pylith::topology::Mesh&) const':<br>
bc/BoundaryCondition.cc:53: error: `ALE' has not been declared<br>bc/BoundaryCondition.cc:53: error: expected initializer before '<' token<br>bc/BoundaryCondition.cc:54: error: `sieveMesh' was not declared in this scope<br>
bc/BoundaryCondition.cc:57: error: aggregate `std::ostringstream msg' has incomplete type and cannot be defined<br>make[3]: *** [BoundaryCondition.lo] Error 1<br>make[3]: Leaving directory `/home/jeffremt/tools/cig/v1.5-stable/libsrc'<br>
make[2]: *** [all-recursive] Error 1<br>make[2]: Leaving directory `/home/jeffremt/tools/cig/v1.5-stable/libsrc'<br>make[1]: *** [all-recursive] Error 1<br>make[1]: Leaving directory `/home/jeffremt/tools/cig/v1.5-stable'<br>
make: *** [all] Error 2<br><br>
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<br></blockquote></div><br><br clear="all"><br>-- <br>What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br>-- Norbert Wiener<br>
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