<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi,<div><br></div><div>I'm following the pylith tutorial but in the first exercise there is a problem when I launch "pylith axialdisp.cfg"</div><div>the error is:</div><div><br></div><div><div><font class="Apple-style-span" color="#1440FC">macbaillard:twotri3 baillard$ pylith axialdisp.cfg </font></div><div><font class="Apple-style-span" color="#1440FC"><br></font></div><div><font class="Apple-style-span" color="#1440FC">/Users/baillard/pylith/lib/python2.6/site-packages/merlin-1.7.egg/merlin/__init__.py:175: DeprecationWarning: the sets module is deprecated</font></div><div><font class="Apple-style-span" color="#1440FC"> from sets import ImmutableSet</font></div><div><font class="Apple-style-span" color="#1440FC">/Users/baillard/pylith/lib/python2.6/site-packages/merlin-1.7.egg/merlin/__init__.py:175: DeprecationWarning: the sets module is deprecated</font></div><div><font class="Apple-style-span" color="#1440FC"> from sets import ImmutableSet</font></div><div><font class="Apple-style-span" color="#1440FC">/Users/baillard/pylith/lib/python2.6/site-packages/merlin-1.7.egg/merlin/__init__.py:175: DeprecationWarning: the sets module is deprecated</font></div><div><font class="Apple-style-span" color="#1440FC"> from sets import ImmutableSet</font></div><div><font class="Apple-style-span" color="#1440FC"> >> /Users/baillard/pylith/lib/python2.6/site-packages/pylith/utils/PetscManager.py:54:initialize</font></div><div><font class="Apple-style-span" color="#1440FC"> -- petsc(info)</font></div><div><font class="Apple-style-span" color="#1440FC"> -- Initializing PETSc.</font></div><div><font class="Apple-style-span" color="#1440FC"> >> /Users/baillard/pylith/lib/python2.6/site-packages/pylith/meshio/MeshIOObj.py:52:read</font></div><div><font class="Apple-style-span" color="#1440FC"> -- meshioascii(info)</font></div><div><font class="Apple-style-span" color="#1440FC"> -- Reading finite-element mesh</font></div><div><font class="Apple-style-span" color="#1440FC">mpinemesis(2320) malloc: *** error for object 0x102e5a0e0: pointer being freed was not allocated</font></div><div><font class="Apple-style-span" color="#1440FC">*** set a breakpoint in malloc_error_break to debug</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] *** Process received signal ***</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] Signal: Abort trap (6)</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] Signal code: (0)</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] [ 0] 2 libSystem.B.dylib 0x00007fff84de666a _sigtramp + 26</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] [ 1] 3 libSystem.B.dylib 0x00007fff84d8b147 tiny_malloc_from_free_list + 1196</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] [ 2] 4 libSystem.B.dylib 0x00007fff84d8c6b5 free + 128</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] [ 3] 5 libstdc++.6.dylib 0x00007fff86630eb3 _ZNSt15basic_stringbufIcSt11char_traitsIcESaIcEE8overflowEi + 281</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] [ 4] 6 libstdc++.6.dylib 0x00007fff86631c21 _ZNSt15basic_streambufIcSt11char_traitsIcEE6xsputnEPKcl + 139</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] [ 5] 7 libstdc++.6.dylib 0x0000000102dde3d5 _ZSt16__ostream_insertIcSt11char_traitsIcEERSt13basic_ostreamIT_T0_ES6_PKS3_l + 453</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] [ 6] 8 libstdc++.6.dylib 0x0000000102dde651 _ZStlsISt11char_traitsIcEERSt13basic_ostreamIcT_ES5_PKc + 49</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] [ 7] 9 libpylith.0.dylib 0x0000000101760800 _ZN6pylith6meshio11MeshIOAscii5_readEv + 5040</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] [ 8] 10 libpylith.0.dylib 0x0000000101750a66 _ZN6pylith6meshio6MeshIO4readEPNS_8topology4MeshE + 54</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] [ 9] 11 _meshiomodule.so 0x00000001030dddb4 _wrap_MeshIO_read + 164</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] [10] 12 Python 0x0000000100012ff3 PyObject_Call + 112</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] [11] 13 Python 0x000000010009254e PyEval_EvalFrameEx + 20380</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] [12] 14 Python 0x0000000100092cce PyEval_EvalCodeEx + 1803</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] [13] 15 Python 0x00000001000348e1 PyClassMethod_New + 1748</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] [14] 16 Python 0x0000000100012ff3 PyObject_Call + 112</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] [15] 17 Python 0x00000001000229df PyClass_New + 1575</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] [16] 18 Python 0x0000000100012ff3 PyObject_Call + 112</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] [17] 19 Python 0x000000010009251a PyEval_EvalFrameEx + 20328</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] [18] 20 Python 0x00000001000912e1 PyEval_EvalFrameEx + 15663</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] [19] 21 Python 0x0000000100092cce PyEval_EvalCodeEx + 1803</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] [20] 22 Python 0x000000010009135e PyEval_EvalFrameEx + 15788</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] [21] 23 Python 0x0000000100092cce PyEval_EvalCodeEx + 1803</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] [22] 24 Python 0x000000010003488f PyClassMethod_New + 1666</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] [23] 25 Python 0x0000000100012ff3 PyObject_Call + 112</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] [24] 26 Python 0x000000010009254e PyEval_EvalFrameEx + 20380</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] [25] 27 Python 0x0000000100092cce PyEval_EvalCodeEx + 1803</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] [26] 28 Python 0x000000010003488f PyClassMethod_New + 1666</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] [27] 29 Python 0x0000000100012ff3 PyObject_Call + 112</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] [28] 30 Python 0x000000010009254e PyEval_EvalFrameEx + 20380</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] [29] 31 Python 0x0000000100092cce PyEval_EvalCodeEx + 1803</font></div><div><font class="Apple-style-span" color="#1440FC">[macbaillard:02320] *** End of error message ***</font></div><div><font class="Apple-style-span" color="#1440FC">--------------------------------------------------------------------------</font></div><div><font class="Apple-style-span" color="#1440FC">mpirun noticed that process rank 0 with PID 2320 on node <a href="http://macbaillard.ipgp.fr">macbaillard.ipgp.fr</a> exited on signal 6 (Abort trap).</font></div><div><font class="Apple-style-span" color="#1440FC">--------------------------------------------------------------------------</font></div><div><font class="Apple-style-span" color="#1440FC">/Users/baillard/pylith/bin/nemesis: mpirun: exit 134</font></div><div><font class="Apple-style-span" color="#1440FC">/Users/baillard/pylith/bin/pylith: /Users/baillard/pylith/bin/nemesis: exit 1</font></div></div><div><br></div><div><div>Could anybody help me with this? I work on Mac OSX</div><div><br></div><div>Best regards,</div><div><br></div><div>
<div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><div>Christian Baillard, PhD student</div><div>Laboratoire de Géosciences Marines</div><div>Institut de Physique du Globe de Paris</div><div>Bureau 335 - 1,rue Jussieu</div><div>75238 Paris cedex 05</div><div>+33 (0)1 83 95 77 72</div></div><div><br></div></div><br class="Apple-interchange-newline"><br class="Apple-interchange-newline">
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