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Thanks. any other thoughts? I had that set already. I ran a make
clean and tried again. LD_LIBRARY_PATH is as follows:<br>
<br>
/opt/pylith-1.6.2/lib:/opt/pylith-1.6.2/lib64:/opt/mpi/gcc/openmpi-1.4.3/lib64/openmpi:/opt/pylith-1.6.2/lib:/opt/pylith-1.6.2/lib64:/opt/hdf5/lib:/opt/netcdf4/lib:/opt/ncl/lib:/opt/pylith-1.6.2/lib:/opt/pylith-1.6.2/lib64:/opt/mpi/gcc/openmpi-1.4.3/lib64:/usr/lib:/usr/lib64<br>
<br>
<br>
On 11/28/2011 02:06 PM, Matthew Knepley wrote:
<blockquote
cite="mid:CAMYG4Gnx5L0+o4B2KKRmYKk+5H2L=GZQ2K=kmYpGXT3HHDtAWQ@mail.gmail.com"
type="cite">On Mon, Nov 28, 2011 at 3:53 PM, Naveed Near-Ansari <span
dir="ltr"><<a moz-do-not-send="true"
href="mailto:naveed@caltech.edu">naveed@caltech.edu</a>></span>
wrote:<br>
<div class="gmail_quote">
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex;">
I was attempting to build pylith on a new system and have run
into an<br>
error during the tests. The message said to report it here.<br>
</blockquote>
<div><br>
</div>
<div>OpenMPI is perverse. Its shared libraries must be in your
LD_LIBRARY_PATH.</div>
<div><br>
</div>
<div> Matt</div>
<div> </div>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex;">
Naveed<br>
<br>
make[6]: Leaving directory<br>
`/root/pylith-installer-1.6.2-0/pylith-build/unittests/libtests/utils'<br>
make[5]: Leaving directory<br>
`/root/pylith-installer-1.6.2-0/pylith-build/unittests/libtests/utils'<br>
make[5]: Entering directory<br>
`/root/pylith-installer-1.6.2-0/pylith-build/unittests/libtests'<br>
make[5]: Nothing to be done for `check-am'.<br>
make[5]: Leaving directory<br>
`/root/pylith-installer-1.6.2-0/pylith-build/unittests/libtests'<br>
make[4]: Leaving directory<br>
`/root/pylith-installer-1.6.2-0/pylith-build/unittests/libtests'<br>
Making check in pytests<br>
make[4]: Entering directory<br>
`/root/pylith-installer-1.6.2-0/pylith-build/unittests/pytests'<br>
Making check in bc<br>
make[5]: Entering directory<br>
`/root/pylith-installer-1.6.2-0/pylith-build/unittests/pytests/bc'<br>
Making check in data<br>
make[6]: Entering directory<br>
`/root/pylith-installer-1.6.2-0/pylith-build/unittests/pytests/bc/data'<br>
if [ "X../../../../../pylith-1.6.2" != "X../../../.." ]; then
for f in<br>
tri3_disp.spatialdb tri3_vel.spatialdb
tri3_tractions.spatialdb<br>
tri3.mesh elasticplanestrain.spatialdb; do /bin/sh<br>
/root/pylith-installer-1.6.2-0/pylith-1.6.2/aux-config/install-sh
-c -m<br>
644 ../../../../../pylith-1.6.2/unittests/pytests/bc/data/$f<br>
../../../../unittests/pytests/bc/data; done; fi<br>
make check-am<br>
make[7]: Entering directory<br>
`/root/pylith-installer-1.6.2-0/pylith-build/unittests/pytests/bc/data'<br>
make[7]: Nothing to be done for `check-am'.<br>
make[7]: Leaving directory<br>
`/root/pylith-installer-1.6.2-0/pylith-build/unittests/pytests/bc/data'<br>
make[6]: Leaving directory<br>
`/root/pylith-installer-1.6.2-0/pylith-build/unittests/pytests/bc/data'<br>
make[6]: Entering directory<br>
`/root/pylith-installer-1.6.2-0/pylith-build/unittests/pytests/bc'<br>
make testbc.py<br>
make[7]: Entering directory<br>
`/root/pylith-installer-1.6.2-0/pylith-build/unittests/pytests/bc'<br>
make[7]: Nothing to be done for<br>
`../../../../pylith-1.6.2/unittests/pytests/bc/testbc.py'.<br>
make[7]: Leaving directory<br>
`/root/pylith-installer-1.6.2-0/pylith-build/unittests/pytests/bc'<br>
make check-TESTS<br>
make[7]: Entering directory<br>
`/root/pylith-installer-1.6.2-0/pylith-build/unittests/pytests/bc'<br>
/opt/pylith-1.6.2/lib/python2.4/site-packages/pythia-0.8.1.12-py2.4.egg/pyre/inventory/odb/Curator.py:200:<br>
UserWarning: Module pkg_resources was already imported from<br>
/opt/pylith-1.6.2/lib/python2.4/site-packages/setuptools-0.6c9-py2.4.egg/pkg_resources.pyc,<br>
but
/opt/pylith-1.6.2/lib/python2.4/site-packages/merlin-1.7.egg
is<br>
being added to sys.path<br>
from pkg_resources import resource_listdir, resource_isdir,<br>
resource_exists, resource_filename, Requirement<br>
/opt/pylith-1.6.2/lib/python2.4/site-packages/pythia-0.8.1.12-py2.4.egg/pyre/inventory/odb/Curator.py:200:<br>
UserWarning: Module site was already imported from<br>
/usr/lib64/python2.4/site.pyc, but<br>
/opt/pylith-1.6.2/lib/python2.4/site-packages/merlin-1.7.egg
is being<br>
added to sys.path<br>
from pkg_resources import resource_listdir, resource_isdir,<br>
resource_exists, resource_filename, Requirement<br>
/usr/bin/python: symbol lookup error:<br>
/opt/mpi/gcc/openmpi-1.4.3/lib64/openmpi/mca_paffinity_linux.so:<br>
undefined symbol: mca_base_param_reg_int<br>
FAIL: testbc.py<br>
==========================================<br>
1 of 1 test failed<br>
Please report to <a moz-do-not-send="true"
href="mailto:cig-short@geodynamics.org">cig-short@geodynamics.org</a><br>
<br>
<br>
<br>
_______________________________________________<br>
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<a moz-do-not-send="true"
href="mailto:CIG-SHORT@geodynamics.org">CIG-SHORT@geodynamics.org</a><br>
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href="http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short"
target="_blank">http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short</a><br>
<br>
</blockquote>
</div>
<br>
<br clear="all">
<div><br>
</div>
-- <br>
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to
which their experiments lead.<br>
-- Norbert Wiener<br>
</blockquote>
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