<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Birendra,<div><br></div><div>Try looking in /var/torque/spool</div><div><br></div><div>Cheers,</div><div>Charles</div><div><br></div><div><br><div><div>On 18/03/2013, at 9:19 AM, Birendra jha wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div>I guess we don't have that utility on our system:<br><br>[bjha@login twowaycoupled]$ qpeek -o 65848<br>qpeek: Command not found.<br><br>Can I install it locally? Is there any other option? <br>I also couldn't locate /opt/torque folder. The only folder I can see in the compute node is scratch/ which does not have stdout.<br><br>Thanks<br>Birendra<br><br><br>--- On Sun, 3/17/13, Brad Aagaard <<a href="mailto:baagaard@usgs.gov">baagaard@usgs.gov</a>> wrote:<br><br><blockquote type="cite">From: Brad Aagaard <<a href="mailto:baagaard@usgs.gov">baagaard@usgs.gov</a>><br></blockquote><blockquote type="cite">Subject: Re: [CIG-SHORT] stdout stderr of PBS parallel run<br></blockquote><blockquote type="cite">To: <a href="mailto:cig-short@geodynamics.org">cig-short@geodynamics.org</a><br></blockquote><blockquote type="cite">Date: Sunday, March 17, 2013, 11:49 PM<br></blockquote><blockquote type="cite">Yes, use qpeek as Surendra<br></blockquote><blockquote type="cite">suggested.<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">The stdout and stderr files are usually stored locally on<br></blockquote><blockquote type="cite">the compute <br></blockquote><blockquote type="cite">node of process 0 in a directory like /opt/torque/spool.<br></blockquote><blockquote type="cite">They are copied <br></blockquote><blockquote type="cite">to the filenames specified in the job parameters when the<br></blockquote><blockquote type="cite">job completes.<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Brad<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">On 3/17/13 11:12 AM, <a href="mailto:surendra@caltech.edu">surendra@caltech.edu</a><br></blockquote><blockquote type="cite">wrote:<br></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">On Mar 17, 2013, at 11:08 AM, Birendra jha <<a href="mailto:bjha7333@yahoo.com">bjha7333@yahoo.com</a><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><<a href="mailto:bjha7333@yahoo.com">mailto:bjha7333@yahoo.com</a>>><br></blockquote></blockquote><blockquote type="cite">wrote:<br></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Hi<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">When I run pylith in parallel using PBS queue<br></blockquote></blockquote></blockquote><blockquote type="cite">system, the stdout.txt<br></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">and stderr.txt are created in the run folder AFTER<br></blockquote></blockquote></blockquote><blockquote type="cite">the run is over. I<br></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">want to see these files during the simulation,<br></blockquote></blockquote></blockquote><blockquote type="cite">especially stdout.txt.<br></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">What option should I use in the pylithapp.cfg?<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">You can use 'qpeek' to check .err and .out files before<br></blockquote></blockquote><blockquote type="cite">the completion<br></blockquote><blockquote type="cite"><blockquote type="cite">of a run.<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"> qpeek -o <jobid><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"> qpeek -e <jobid><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">--Surendra<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">_______________________________________________<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">CIG-SHORT mailing list<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><a href="mailto:CIG-SHORT@geodynamics.org">CIG-SHORT@geodynamics.org</a><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><a href="http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short">http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short</a><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">_______________________________________________<br></blockquote><blockquote type="cite">CIG-SHORT mailing list<br></blockquote><blockquote type="cite"><a href="mailto:CIG-SHORT@geodynamics.org">CIG-SHORT@geodynamics.org</a><br></blockquote><blockquote type="cite"><a href="http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short">http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short</a><br></blockquote><blockquote type="cite"><br></blockquote>_______________________________________________<br>CIG-SHORT mailing list<br><a href="mailto:CIG-SHORT@geodynamics.org">CIG-SHORT@geodynamics.org</a><br>http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short<br></div></blockquote></div><br><div>
<span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="3" style="font: normal normal normal 12px/normal Helvetica; ">Charles A. Williams</font></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Scientist<br>GNS Science<br>1 Fairway Drive, Avalon<br>PO Box 30368<br>Lower Hutt 5040<br>New Zealand<br>ph (office): 0064-4570-4566<br>fax (office): 0064-4570-4600</div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><a href="mailto:C.Williams@gns.cri.nz">C.Williams@gns.cri.nz</a></div></div></div></span></span>
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