mv -f .deps/PointForceDataQuad4.Tpo .deps/PointForceDataQuad4.Po mpicxx -DHAVE_CONFIG_H -I. -I../../../../pylith-1.6.3/unittests/libtests/bc -I../../.. -I../../../../pylith-1.6.3/libsrc -I/nm/siful2/dbs tudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/pylith/lib/python2.6/site-packages/pythia-0.8.1.14-py2.6.egg -I/usr/include/python2.6 -I/db studi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/pylith/include -I/dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/pylith/include -I/dbstudi 5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/pylith/include/sieve -I/dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/pylith/include -I/opt/op enmpi-1.4.5/include -DENABLE_HDF5 -DENABLE_CUBIT -I/dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/pylith/include -g -O2 -MT PointForc eDataTet4.o -MD -MP -MF .deps/PointForceDataTet4.Tpo -c -o PointForceDataTet4.o `test -f 'data/PointForceDataTet4.cc' || echo '../../../. ./pylith-1.6.3/unittests/libtests/bc/'`data/PointForceDataTet4.cc mv -f .deps/PointForceDataTet4.Tpo .deps/PointForceDataTet4.Po mpicxx -DHAVE_CONFIG_H -I. -I../../../../pylith-1.6.3/unittests/libtests/bc -I../../.. -I../../../../pylith-1.6.3/libsrc -I/nm/siful2/dbs tudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/pylith/lib/python2.6/site-packages/pythia-0.8.1.14-py2.6.egg -I/usr/include/python2.6 -I/db studi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/pylith/include -I/dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/pylith/include -I/dbstudi 5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/pylith/include/sieve -I/dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/pylith/include -I/opt/op enmpi-1.4.5/include -DENABLE_HDF5 -DENABLE_CUBIT -I/dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/pylith/include -g -O2 -MT PointForc eDataHex8.o -MD -MP -MF .deps/PointForceDataHex8.Tpo -c -o PointForceDataHex8.o `test -f 'data/PointForceDataHex8.cc' || echo '../../../. ./pylith-1.6.3/unittests/libtests/bc/'`data/PointForceDataHex8.cc mv -f .deps/PointForceDataHex8.Tpo .deps/PointForceDataHex8.Po /bin/sh ../../../libtool --tag=CXX --mode=link mpicxx -g -O2 -L/dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/pylith/lib -o testb c TestBoundaryCondition.o TestBoundaryConditionPoints.o TestTimeDependent.o TestTimeDependentPoints.o TestBoundaryMesh.o TestBoundaryMesh Tri3.o TestBoundaryMeshQuad4.o TestBoundaryMeshTet4.o TestBoundaryMeshHex8.o TestAbsorbingDampers.o TestAbsorbingDampersLine2.o TestAbsor bingDampersTri3.o TestAbsorbingDampersQuad4.o TestAbsorbingDampersTet4.o TestAbsorbingDampersHex8.o TestDirichletBC.o TestDirichletBCLine 2.o TestDirichletBCLine2b.o TestDirichletBCTri3.o TestDirichletBCQuad4.o TestDirichletBCTet4.o TestDirichletBCHex8.o TestDirichletBCMulti .o TestDirichletBCMultiTri3.o TestDirichletBCMultiTet4.o TestDirichletBoundary.o TestDirichletBoundaryTri3.o TestDirichletBoundaryQuad4.o TestDirichletBoundaryTet4.o TestDirichletBoundaryHex8.o TestNeumann.o TestNeumannLine2.o TestNeumannTri3.o TestNeumannQuad4.o TestNeuman nTet4.o TestNeumannHex8.o TestPointForce.o TestPointForceLine2.o TestPointForceTri3.o TestPointForceQuad4.o TestPointForceTet4.o TestPoin tForceHex8.o test_bc.o BoundaryMeshData.o BoundaryMeshDataTri3.o BoundaryMeshDataQuad4.o BoundaryMeshDataTet4.o BoundaryMeshDataHex8.o Ab sorbingDampersData.o AbsorbingDampersDataLine2.o AbsorbingDampersDataTri3.o AbsorbingDampersDataQuad4.o AbsorbingDampersDataTet4.o Absorb ingDampersDataHex8.o DirichletData.o DirichletDataLine2.o DirichletDataLine2b.o DirichletDataTri3.o DirichletDataQuad4.o DirichletDataTet 4.o DirichletDataHex8.o DirichletDataMulti.o DirichletDataMultiTri3.o DirichletDataMultiTet4.o NeumannData.o NeumannDataLine2.o NeumannDa taTri3.o NeumannDataQuad4.o NeumannDataTet4.o NeumannDataHex8.o PointForceData.o PointForceDataLine2.o PointForceDataTri3.o PointForceDat aQuad4.o PointForceDataTet4.o PointForceDataHex8.o -lcppunit ../../../libsrc/pylith/libpylith.la -lspatialdata -L/dbstudi5/DBIPET3/PRJ_RD _SIM_102011/Tools/Pylith/pylith/lib -lpetsc -Wl,-rpath,/dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/pylith/lib -lchaco -lml -lpthread -lflapack -lfblas -Wl,-rpath,/dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/pylith/lib -L/dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pyl ith/pylith/lib -lhdf5 -Wl,-rpath,/opt/openmpi-1.4.5/lib -L/opt/openmpi-1.4.5/lib -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.6 -L/usr /lib/gcc/x86_64-redhat-linux/4.4.6 -ldl -lz -lmpi -lopen-rte -lopen-pal -lnsl -lutil -lgcc_s -lpthread -lmpi_f90 -lmpi_f77 -lgfortran -lm -lm -lm -lm -lmpi_cxx -lstdc++ -lmpi_cxx -lstdc++ -ldl -lz -lmpi -lopen-rte -lopen-pal -lnsl -lutil -lgcc_s -lpthread -ldl -lz -L/usr/li b64 -L/usr/lib64/python2.6/config -lpython2.6 -lpthread -ldl -lutil -lm -lnetcdf_c++ -lnetcdf -lproj -lhdf5 libtool: link: mpicxx -g -O2 -o .libs/testbc TestBoundaryCondition.o TestBoundaryConditionPoints.o TestTimeDependent.o TestTimeDependentP oints.o TestBoundaryMesh.o TestBoundaryMeshTri3.o TestBoundaryMeshQuad4.o TestBoundaryMeshTet4.o TestBoundaryMeshHex8.o TestAbsorbingDamp ers.o TestAbsorbingDampersLine2.o TestAbsorbingDampersTri3.o TestAbsorbingDampersQuad4.o TestAbsorbingDampersTet4.o TestAbsorbingDampersH ex8.o TestDirichletBC.o TestDirichletBCLine2.o TestDirichletBCLine2b.o TestDirichletBCTri3.o TestDirichletBCQuad4.o TestDirichletBCTet4.o TestDirichletBCHex8.o TestDirichletBCMulti.o TestDirichletBCMultiTri3.o TestDirichletBCMultiTet4.o TestDirichletBoundary.o TestDirichlet BoundaryTri3.o TestDirichletBoundaryQuad4.o TestDirichletBoundaryTet4.o TestDirichletBoundaryHex8.o TestNeumann.o TestNeumannLine2.o Test NeumannTri3.o TestNeumannQuad4.o TestNeumannTet4.o TestNeumannHex8.o TestPointForce.o TestPointForceLine2.o TestPointForceTri3.o TestPoin tForceQuad4.o TestPointForceTet4.o TestPointForceHex8.o test_bc.o BoundaryMeshData.o BoundaryMeshDataTri3.o BoundaryMeshDataQuad4.o Bound aryMeshDataTet4.o BoundaryMeshDataHex8.o AbsorbingDampersData.o AbsorbingDampersDataLine2.o AbsorbingDampersDataTri3.o AbsorbingDampersDa taQuad4.o AbsorbingDampersDataTet4.o AbsorbingDampersDataHex8.o DirichletData.o DirichletDataLine2.o DirichletDataLine2b.o DirichletDataT ri3.o DirichletDataQuad4.o DirichletDataTet4.o DirichletDataHex8.o DirichletDataMulti.o DirichletDataMultiTri3.o DirichletDataMultiTet4.o NeumannData.o NeumannDataLine2.o NeumannDataTri3.o NeumannDataQuad4.o NeumannDataTet4.o NeumannDataHex8.o PointForceData.o PointForceDat aLine2.o PointForceDataTri3.o PointForceDataQuad4.o PointForceDataTet4.o PointForceDataHex8.o -Wl,-rpath -Wl,/dbstudi5/DBIPET3/PRJ_RD_SIM _102011/Tools/Pylith/pylith/lib -Wl,-rpath -Wl,/dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/pylith/lib -Wl,-rpath -Wl,/opt/openmpi-1. 4.5/lib -Wl,-rpath -Wl,/usr/lib/gcc/x86_64-redhat-linux/4.4.6 -L/dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/pylith/lib /dbstudi5/DB IPET3/PRJ_RD_SIM_102011/Tools/Pylith/pylith/lib/libcppunit.so ../../../libsrc/pylith/.libs/libpylith.so /dbstudi5/DBIPET3/PRJ_RD_SIM_1020 11/Tools/Pylith/pylith/lib/libspatialdata.so -lpetsc -lchaco -lml -lflapack -lfblas -L/opt/openmpi-1.4.5/lib -L/usr/lib/gcc/x86_64-redhat -linux/4.4.6 /opt/openmpi-1.4.5/lib/libmpi_f90.so /opt/openmpi-1.4.5/lib/libmpi_f77.so -lgfortran /opt/openmpi-1.4.5/lib/libmpi_cxx.so -l stdc++ /opt/openmpi-1.4.5/lib/libmpi.so /opt/openmpi-1.4.5/lib/libopen-rte.so /opt/openmpi-1.4.5/lib/libopen-pal.so -lnsl -lgcc_s -lz -L/ usr/lib64 -L/usr/lib64/python2.6/config -lpython2.6 -lpthread -ldl -lutil -lm /dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/pylith/lib /libnetcdf_c++.so /dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/pylith/lib/libnetcdf.so /dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pyli th/pylith/lib/libproj.so /dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/pylith/lib/libhdf5.so -pthread -Wl,-rpath -Wl,/dbstudi5/DBIPET3 /PRJ_RD_SIM_102011/Tools/Pylith/pylith/lib -Wl,-rpath -Wl,/opt/openmpi-1.4.5/lib make[7]: Leaving directory `/nm/siful2/dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/build/pylith/pylith-build/unittests/libtests/bc' make check-TESTS make[7]: Entering directory `/nm/siful2/dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/build/pylith/pylith-build/unittests/libtests/bc' -------------------------------------------------------------------------- WARNING: There are more than one active ports on host 'ecl32', but the default subnet GID prefix was detected on more than one of these ports. If these ports are connected to different physical IB networks, this configuration will fail in Open MPI. This version of Open MPI requires that every physically separate IB subnet that is used between connected MPI processes must have different subnet ID values. Please see this FAQ entry for more details: http://www.open-mpi.org/faq/?category=openfabrics#ofa-default-subnet-gid NOTE: You can turn off this warning by setting the MCA parameter btl_openib_warn_default_gid_prefix to 0. -------------------------------------------------------------------------- N6pylith2bc21TestBoundaryConditionE::testLabel : OK N6pylith2bc27TestBoundaryConditionPointsE::testGetPoints : OK N6pylith2bc17TestTimeDependentE::testDBInitial : OK N6pylith2bc17TestTimeDependentE::testDBRate : OK N6pylith2bc17TestTimeDependentE::testDBChange : OK N6pylith2bc17TestTimeDependentE::testDBTimeHistory : OK N6pylith2bc17TestTimeDependentE::testVerifyConfiguration : OK N6pylith2bc23TestTimeDependentPointsE::testBCDOF : OK N6pylith2bc23TestTimeDependentPointsE::testGetLabel : OK N6pylith2bc23TestTimeDependentPointsE::testQueryDatabaseslt-testbc: ../../spatialdata-1.8.1/libsrc/units/Parser.cc:36: spatialdata::units ::Parser::Parser(): Assertion `0 != mod' failed. [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[0]PETSC ERROR: or try http://valgrind.org on GNU/linu x and Apple Mac OS X to find memory corruption errors [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [0]PETSC ERROR: to get more information on the crash. [0]PETSC ERROR: --------------------- Error Message ------------------------------------ [0]PETSC ERROR: Signal received! [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Petsc Development HG revision: 4c8ea9bd484535a6b16bda198247a5bf49dea0df HG Date: Thu Mar 08 19:59:42 2012 -0600 [0]PETSC ERROR: See docs/changes/index.html for recent updates. [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [0]PETSC ERROR: See docs/index.html for manual pages. [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: /dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/build/pylith/pylith-build/unittests/libtests/bc/.libs/lt-testbc on a arc h-linu named ecl32 by ag22343 Wed Mar 27 13:23:06 2013 [0]PETSC ERROR: Libraries linked from /dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/pylith/lib [0]PETSC ERROR: Configure run at Wed Mar 27 12:54:06 2013 [0]PETSC ERROR: Configure options --prefix=/dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/pylith --with-c2html=0 --with-x=0 --CXXFLAGS= -DMPICH_IGNORE_CXX_SEEK --with-clanguage=C++ --with-mpicompilers=1 --with-debugging=0 --with-shared-libraries=1 --with-sieve=1 --download -boost=1 --download-chaco=1 --download-ml=1 --download-f-blas-lapack=1 --with-hdf5=1 --with-hdf5-include=/dbstudi5/DBIPET3/PRJ_RD_SIM_102 011/Tools/Pylith/pylith/include --with-hdf5-lib=/dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/pylith/lib/libhdf5.dylib --LIBS=-lz CPPF LAGS="-I/dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/pylith/include " LDFLAGS="-L/dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/pyl ith/lib " PETSC_DIR=/nm/siful2/dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/build/pylith/petsc-dev [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: User provided function() line 0 in unknown directory unknown file -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD with errorcode 59. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- FAIL: testbc ========================================== 1 of 1 test failed Please report to cig-short@geodynamics.org ========================================== make[7]: *** [check-TESTS] Error 1 make[7]: Leaving directory `/nm/siful2/dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/build/pylith/pylith-build/unittests/libtests/bc' make[6]: *** [check-am] Error 2 make[6]: Leaving directory `/nm/siful2/dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/build/pylith/pylith-build/unittests/libtests/bc' make[5]: *** [check-recursive] Error 1 make[5]: Leaving directory `/nm/siful2/dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/build/pylith/pylith-build/unittests/libtests/bc' make[4]: *** [check-recursive] Error 1 make[4]: Leaving directory `/nm/siful2/dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/build/pylith/pylith-build/unittests/libtests' make[3]: *** [check-recursive] Error 1 make[3]: Leaving directory `/nm/siful2/dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/build/pylith/pylith-build/unittests'