(view as text)
Pushing language C
Popping language C
Pushing language CUDA
Popping language CUDA
Pushing language Cxx
Popping language Cxx
Pushing language FC
Popping language FC
================================================================================
================================================================================
Starting Configure Run at Thu Feb 9 06:08:27 2012
Configure Options: --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions --prefix=/home/buildbot/install/pylith_linux_i686_binbot --download-f-blas-lapack=1 --with-sieve=1 --with-c2html=0 --CXXFLAGS=-DMPICH_IGNORE_CXX_SEEK --with-clanguage=C++ --with-mpicompilers=1 --with-debugging=0 --download-chaco=1 --download-boost=1 --download-ml=1 --with-hdf5=1 --with-hdf5-dir=/home/buildbot/install/pylith_linux_i686_binbot --with-x=0 --with-shared-libraries=1
Working directory: /home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries
Machine platform:
('Linux', 'nix', '2.6.24-29-server', '#1 SMP Wed Aug 10 17:10:21 UTC 2011', 'i686', '')
Python version:
2.6.6 (r266:84292, Mar 15 2011, 18:32:29)
[GCC 4.5.2]
================================================================================
Pushing language C
Popping language C
Pushing language CUDA
Popping language CUDA
Pushing language Cxx
Popping language Cxx
Pushing language FC
Popping language FC
================================================================================
TEST configureExternalPackagesDir from config.framework(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/framework.py:817)
TESTING: configureExternalPackagesDir from config.framework(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/framework.py:817)
================================================================================
TEST configureDebuggers from PETSc.utilities.debuggers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/debuggers.py:22)
TESTING: configureDebuggers from PETSc.utilities.debuggers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/debuggers.py:22)
Find a default debugger and determine its arguments
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/gdb...not found
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/gdb...not found
Checking for program /home/buildbot/pylith_deps/bin/gdb...not found
Checking for program /home/buildbot/buildbot/bin/gdb...not found
Checking for program /usr/local/sbin/gdb...not found
Checking for program /usr/local/bin/gdb...not found
Checking for program /usr/sbin/gdb...not found
Checking for program /usr/bin/gdb...not found
Checking for program /sbin/gdb...not found
Checking for program /bin/gdb...not found
Checking for program /usr/games/gdb...not found
Checking for program /home/buildbot/gdb...not found
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/dbx...not found
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/dbx...not found
Checking for program /home/buildbot/pylith_deps/bin/dbx...not found
Checking for program /home/buildbot/buildbot/bin/dbx...not found
Checking for program /usr/local/sbin/dbx...not found
Checking for program /usr/local/bin/dbx...not found
Checking for program /usr/sbin/dbx...not found
Checking for program /usr/bin/dbx...not found
Checking for program /sbin/dbx...not found
Checking for program /bin/dbx...not found
Checking for program /usr/games/dbx...not found
Checking for program /home/buildbot/dbx...not found
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/xdb...not found
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/xdb...not found
Checking for program /home/buildbot/pylith_deps/bin/xdb...not found
Checking for program /home/buildbot/buildbot/bin/xdb...not found
Checking for program /usr/local/sbin/xdb...not found
Checking for program /usr/local/bin/xdb...not found
Checking for program /usr/sbin/xdb...not found
Checking for program /usr/bin/xdb...not found
Checking for program /sbin/xdb...not found
Checking for program /bin/xdb...not found
Checking for program /usr/games/xdb...not found
Checking for program /home/buildbot/xdb...not found
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/dsymutil...not found
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/dsymutil...not found
Checking for program /home/buildbot/pylith_deps/bin/dsymutil...not found
Checking for program /home/buildbot/buildbot/bin/dsymutil...not found
Checking for program /usr/local/sbin/dsymutil...not found
Checking for program /usr/local/bin/dsymutil...not found
Checking for program /usr/sbin/dsymutil...not found
Checking for program /usr/bin/dsymutil...not found
Checking for program /sbin/dsymutil...not found
Checking for program /bin/dsymutil...not found
Checking for program /usr/games/dsymutil...not found
Checking for program /home/buildbot/dsymutil...not found
Defined make macro "DSYMUTIL" to "true"
================================================================================
TEST configureCLanguage from PETSc.utilities.languages(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/languages.py:45)
TESTING: configureCLanguage from PETSc.utilities.languages(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/languages.py:45)
Choose between C and C++ bindings
================================================================================
TEST configureLanguageSupport from PETSc.utilities.languages(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/languages.py:51)
TESTING: configureLanguageSupport from PETSc.utilities.languages(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/languages.py:51)
Check c-support c++-support and other misc tests
Allowing C++ name mangling
C language is Cxx
Defined "CLANGUAGE_CXX" to "1"
================================================================================
TEST configureExternC from PETSc.utilities.languages(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/languages.py:68)
TESTING: configureExternC from PETSc.utilities.languages(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/languages.py:68)
Protect C bindings from C++ mangling
================================================================================
TEST configureFortranLanguage from PETSc.utilities.languages(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/languages.py:74)
TESTING: configureFortranLanguage from PETSc.utilities.languages(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/languages.py:74)
Turn on Fortran bindings
Using Fortran
================================================================================
TEST configureMake from config.programs(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/programs.py:24)
TESTING: configureMake from config.programs(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/programs.py:24)
Check various things about make
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/make...not found
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/make...not found
Checking for program /home/buildbot/pylith_deps/bin/make...not found
Checking for program /home/buildbot/buildbot/bin/make...not found
Checking for program /usr/local/sbin/make...not found
Checking for program /usr/local/bin/make...not found
Checking for program /usr/sbin/make...not found
Checking for program /usr/bin/make...found
Defined make macro "MAKE" to "/usr/bin/make"
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/strings...not found
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/strings...not found
Checking for program /home/buildbot/pylith_deps/bin/strings...not found
Checking for program /home/buildbot/buildbot/bin/strings...not found
Checking for program /usr/local/sbin/strings...not found
Checking for program /usr/local/bin/strings...not found
Checking for program /usr/sbin/strings...not found
Checking for program /usr/bin/strings...found
Defined make macro "STRINGS" to "/usr/bin/strings"
sh: /usr/bin/strings /usr/bin/make
Executing: /usr/bin/strings /usr/bin/make
sh: /lib/ld-linux.so.2
librt.so.1
__gmon_start__
_Jv_RegisterClasses
clock_gettime
libc.so.6
_IO_stdin_used
globfree64
fflush
strcpy
__rawmemchr
fnmatch
sprintf
_IO_putc
setlocale
strsignal
strncmp
optind
strrchr
wait
pipe
__strdup
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glob64
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sigprocmask
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getloadavg
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memcpy
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realpath
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__environ
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touch: Member `%s' does not exist in `%s'
touch: Bad return code from ar_member_touch on `%s'
attempt to use unsupported feature: `%s'
!<arch>
ARFILENAMES/
# commands to execute
(built-in):
(from `%s', line %lu):
%.*s
*** [%s] Deleting file `%s'
*** Deleting file `%s'
unlink:
kill
$(MAKE)
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*** [%s] Archive member `%s' may be bogus; not deleted
*** Archive member `%s' may be bogus; not deleted
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COFLAGS
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$(FC)
F77FLAGS
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LINT
lint
YACC
yacc
MAKEINFO
makeinfo
TEXI2DVI
texi2dvi
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cweave
CTANGLE
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rm -f
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LINK.c
COMPILE.cc
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COMPILE.cpp
LINK.cc
LINK.C
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LINK.cpp
YACC.y
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LEX.l
$(LEX) $(LFLAGS) -t
COMPILE.f
LINK.f
COMPILE.F
LINK.F
COMPILE.r
LINK.r
COMPILE.def
COMPILE.mod
COMPILE.p
LINK.p
LINK.s
COMPILE.s
LINK.S
COMPILE.S
PREPROCESS.S
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PREPROCESS.F
PREPROCESS.r
LINT.c
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.LIBPATTERNS
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%.out
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cp $< $@
%.w %.ch
$(CTANGLE) $^ $@
%.tex
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.def.sym
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.S.o
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.txinfo.dvi
.w.c
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.web.p
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+$(if $(wildcard $@),,$(CO) $(COFLAGS) $< $@)
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$(CXX) $(CXXFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c
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$(LINK.o) $^ $(LOADLIBES) $(LDLIBS) -o $@
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$(LINK.S) $^ $(LOADLIBES) $(LDLIBS) -o $@
$(LINK.c) $^ $(LOADLIBES) $(LDLIBS) -o $@
$(LINK.cc) $^ $(LOADLIBES) $(LDLIBS) -o $@
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$(LINK.cpp) $^ $(LOADLIBES) $(LDLIBS) -o $@
$(LINK.f) $^ $(LOADLIBES) $(LDLIBS) -o $@
$(LINK.p) $^ $(LOADLIBES) $(LDLIBS) -o $@
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$(MAKEINFO) $(MAKEINFO_FLAGS) $< -o $@
$(TEXI2DVI) $(TEXI2DVI_FLAGS) $<
# Directories
# %s: could not be stat'd.
files,
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so far.
# %s (device %ld, inode %ld): could not be opened.
# %s (device %ld, inode %ld):
impossibilities in %lu directories.
unterminated variable reference
warning: undefined variable `%.*s'
Recursive variable `%s' references itself (eventually)
# Files
# files hash-table stats:
%04d-%02d-%02d %02d:%02d:%02d
.%09d
# Not a target:
%s:%s
| %s
# Command-line target.
# Also makes:
# File does not exist.
# File is very old.
# Last modified %s
# File has been updated.
# File has not been updated.
# Successfully updated.
file.c
question_flag
# Failed to be updated.
Current time
*name != '\0'
.PRECIOUS
.LOW_RESOLUTION_TIME
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.INTERMEDIATE
.SECONDARY
.EXPORT_ALL_VARIABLES
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.SILENT
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# Precious file (prerequisite of .PRECIOUS).
# Phony target (prerequisite of .PHONY).
# A default, MAKEFILES, or -include/sinclude makefile.
# Implicit rule search has been done.
# Implicit rule search has not been done.
# Implicit/static pattern stem: `%s'
# File is an intermediate prerequisite.
# Modification time never checked.
# Commands currently running (THIS IS A BUG).
# Dependencies commands running (THIS IS A BUG).
# Needs to be updated (-q is set).
# Invalid value in `update_status' member!
# Invalid value in `command_state' member!
%s: Timestamp out of range; substituting %s
Commands were specified for file `%s' at %s:%lu,
Commands for file `%s' were found by implicit rule search,
but `%s' is now considered the same file as `%s'.
Commands for `%s' will be ignored in favor of those for `%s'.
can't rename single-colon `%s' to double-colon `%s'
can't rename double-colon `%s' to single-colon `%s'
*** Deleting intermediate file `%s'
Removing intermediate files...
print_file
enter_file
lookup_file
undefined
recursive
simple
%s: '%s'
default
environment
environment override
command line
automatic
addprefix
basename
%s:%lu:
filter
abspath
addsuffix
notdir
filter-out
findstring
firstword
flavor
join
lastword
patsubst
realpath
shell
sort
strip
wildcard
wordlist
words
origin
foreach
call
warning
value
eval
Internal error: func_error: '%s'
insufficient number of arguments (%d) to function `%s'
unimplemented on this platform: function `%s'
Cleaning up temporary batch file %s
unterminated call to function `%s': missing `%c'
non-numeric first argument to `word' function
first argument to `word' function must be greater than 0
non-numeric first argument to `wordlist' function
non-numeric second argument to `wordlist' function
invalid first argument to `wordlist' function: `%d'
Avoiding implicit rule recursion.
Trying pattern rule with stem `%.*s'.
Rejecting impossible implicit prerequisite `%s'.
Rejecting impossible rule prerequisite `%s'.
Trying implicit prerequisite `%s'.
Trying rule prerequisite `%s'.
Found prerequisite `%s' as VPATH `%s'
Looking for a rule with intermediate file `%s'.
Looking for an implicit rule for `%s'.
Looking for archive-member implicit rule for `%s'.
job.c
ap <= end
$(SHELL)
$(IFS)
%s: Command not found
SHELL
%s: Shell program not found
execvp:
write jobserver
/bin/sh
vfork
cannot enforce load limit:
getloadavg
(remote)
[%s] Error %d (ignored)
*** [%s] Error %d
(core dumped)
*** [%s] %s%s
remote_status
wait
.DELETE_ON_ERROR
don't
Duplicate the job FD
read jobs pipe
Read returned EBADF.
break
case
continue
exec
exit
login
logout
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switch
test
trap
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%s (line %d) Bad shell context (!unixy && !batch_mode_shell)
INTERNAL: Freeing child 0x%08lx (%s) but no tokens left!
Released token for child 0x%08lx (%s).
cannot enforce load limits on this operating system
Estimated system load = %f (actual = %f) (max requested = %f)
Putting child 0x%08lx (%s) PID %ld%s on the chain.
f->command_state == cs_finished
*** Waiting for unfinished jobs....
Live child 0x%08lx (%s) PID %ld %s
Reaping losing child 0x%08lx PID %ld %s
Reaping winning child 0x%08lx PID %ld %s
Cleaning up temp batch file %s
Removing child 0x%08lx PID %ld%s from chain.
Need a job token; we %shave children
INTERNAL: no children as we go to sleep on read
Obtained token for child 0x%08lx (%s).
construct_command_argv_internal
start_waiting_job
%s: Entering directory `%s'
%s: Leaving directory `%s'
%sThis program built for %s
write
MAKECMDGOALS
Options:
This program built for %s
MFLAGS
MAKEFLAGS
/usr/share/locale
getcwd
.VARIABLES
.FEATURES
archives
check-symlink
MAKE_RESTARTS
MAKE_COMMAND
$(MAKE_COMMAND)
MAKE
-*-command-variables-*-
${-*-command-variables-*-}
MAKEOVERRIDES
MAKELEVEL
CURDIR
TMPDIR
/tmp
fopen (temporary file)
fwrite (temporary file)
.DEFAULT
.DEFAULT_GOAL
%d,%d
dup jobserver
creating jobs pipe
init jobserver pipe
Updating makefiles....
Makefile `%s' was not found
chdir
Re-executing[%u]:
%s=%u
MAKE_RESTARTS=
MAKE_RESTARTS=%u
main.c
unlink (temporary file):
No targets
Updating goal targets....
always-make
basic
debug
environment-overrides
help
ignore-errors
include-dir
jobs
jobserver-fds
load-average
check-symlink-times
just-print
old-file
print-data-base
question
no-builtin-rules
no-builtin-variables
silent
no-keep-going
touch
version
no-print-directory
what-if
warn-undefined-variables
quiet
stop
new-file
assume-new
assume-old
max-load
dry-run
recon
%s: Entering an unknown directory
%s: Leaving an unknown directory
%s[%u]: Entering an unknown directory
%s[%u]: Leaving an unknown directory
%s[%u]: Entering directory `%s'
%s[%u]: Leaving directory `%s'
%sGNU Make %s
%sCopyright (C) 2006 Free Software Foundation, Inc.
%sThis is free software; see the source for copying conditions.
%sThere is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A
%sPARTICULAR PURPOSE.
%sThis program built for %s (%s)
# Make data base, printed on %s
# Finished Make data base on %s
INTERNAL: Exiting with %u jobserver tokens (should be 0)!
INTERNAL: Exiting with %u jobserver tokens available; should be %u!
empty string invalid as file name
the `-%c' option requires a non-empty string argument
the `-%c' option requires a positive integral argument
Usage: %s [options] [target] ...
This program built for %s (%s)
Report bugs to <bug-make@gnu.org>
target-specific order-only second-expansion else-if
unknown debug level specification `%s'
Makefile from standard input specified twice.
internal error: multiple --jobserver-fds options
internal error: invalid --jobserver-fds string `%s'
warning: -jN forced in submake: disabling jobserver mode.
warning: jobserver unavailable: using -j1. Add `+' to parent make rule.
Makefile `%s' might loop; not remaking it.
Failed to remake makefile `%s'.
Included makefile `%s' was not found.
.DEFAULT_GOAL contains more than one target
No targets specified and no makefile found
warning: Clock skew detected. Your build may be incomplete.
Couldn't change back to original directory.
-b, -m Ignored for compatibility.
-B, --always-make Unconditionally make all targets.
-C DIRECTORY, --directory=DIRECTORY
Change to DIRECTORY before doing anything.
-d Print lots of debugging information.
--debug[=FLAGS] Print various types of debugging information.
-e, --environment-overrides
Environment variables override makefiles.
-f FILE, --file=FILE, --makefile=FILE
Read FILE as a makefile.
-h, --help Print this message and exit.
-i, --ignore-errors Ignore errors from commands.
-I DIRECTORY, --include-dir=DIRECTORY
Search DIRECTORY for included makefiles.
-j [N], --jobs[=N] Allow N jobs at once; infinite jobs with no arg.
-k, --keep-going Keep going when some targets can't be made.
-l [N], --load-average[=N], --max-load[=N]
Don't start multiple jobs unless load is below N.
-L, --check-symlink-times Use the latest mtime between symlinks and target.
-n, --just-print, --dry-run, --recon
Don't actually run any commands; just print them.
-o FILE, --old-file=FILE, --assume-old=FILE
Consider FILE to be very old and don't remake it.
-p, --print-data-base Print make's internal database.
-q, --question Run no commands; exit status says if up to date.
-r, --no-builtin-rules Disable the built-in implicit rules.
-R, --no-builtin-variables Disable the built-in variable settings.
-s, --silent, --quiet Don't echo commands.
-S, --no-keep-going, --stop
Turns off -k.
-t, --touch Touch targets instead of remaking them.
-v, --version Print the version number of make and exit.
-w, --print-directory Print the current directory.
--no-print-directory Turn off -w, even if it was turned on implicitly.
-W FILE, --what-if=FILE, --new-file=FILE, --assume-new=FILE
Consider FILE to be infinitely new.
--warn-undefined-variables Warn when an undefined variable is referenced.
main
%s:%lu: ***
%s: ***
%s[%u]: ***
. Stop.
virtual memory exhausted
%s:
%s[%u]:
write error: %s
write error
%s%s: %s
$(HOME)
HOME
define
endef
ifdef
ifndef
ifeq
ifneq
else
endif
extraneous `%s'
.POSIX
.SECONDEXPANSION
invalid syntax in conditional
extraneous `endef'
empty variable name
empty `override' directive
invalid `override' directive
unexport
vpath
-include
sinclude
missing rule before commands
missing separator%s
read.c
*p2 != '\0'
v != 0
missing target pattern
multiple target patterns
missing `endif'
Reading makefile `%s'
(no default goal)
(search path)
(don't care)
(no ~ expansion)
MAKEFILE_LIST
Reading makefiles...
$(MAKEFILES)
/usr/include
.INCLUDE_DIRS
/usr/gnu/include
/usr/local/include
GNUmakefile
Makefile
warning: NUL character seen; rest of line ignored
Extraneous text after `endef' directive
missing `endef', unterminated `define'
Extraneous text after `%s' directive
only one `else' per conditional
prerequisites cannot be defined in command scripts
mixed implicit and static pattern rules
mixed implicit and normal rules
target `%s' doesn't match the target pattern
target file `%s' has both : and :: entries
target `%s' given more than once in the same rule.
warning: overriding commands for target `%s'
warning: ignoring old commands for target `%s'
commands commence before first target
(did you mean TAB instead of 8 spaces?)
Malformed target-specific variable definition
target pattern contains no `%%'
eval
record_target_var
lstat:
readlink:
$(strip $(.LIBPATTERNS))
%s/%s
touch %s
touch: open:
touch: fstat:
touch: read:
touch: lseek:
touch: write:
Pruning file `%s'.
Still updating file `%s'.
Finished updating file `%s'.
File `%s' does not exist.
No need to remake target `%s'
; using VPATH name `%s'
Must remake target `%s'.
Ignoring VPATH name `%s'.
remake.c
Nothing to be done for `%s'.
`%s' is up to date.
/usr/lib
.LIBPATTERNS element `%s' is not a pattern
Warning: File `%s' has modification time %.2g s in the future
%sNo rule to make target `%s'%s
%sNo rule to make target `%s', needed by `%s'%s
Considering target file `%s'.
Recently tried and failed to update file `%s'.
File `%s' was considered already.
*** Warning: .LOW_RESOLUTION_TIME file `%s' has a high resolution time stamp
Found an implicit rule for `%s'.
No implicit rule found for `%s'.
Using default commands for `%s'.
Circular %s <- %s dependency dropped.
Finished prerequisites of target file `%s'.
The prerequisites of `%s' are being made.
Giving up on target file `%s'.
Target `%s' not remade because of errors.
Prerequisite `%s' is order-only for target `%s'.
Prerequisite `%s' of target `%s' does not exist.
Prerequisite `%s' is newer than target `%s'.
Prerequisite `%s' is older than target `%s'.
Target `%s' is double-colon and has no prerequisites.
No commands for `%s' and no prerequisites actually changed.
Making `%s' due to always-make flag.
Commands of `%s' are being run.
Failed to remake target file `%s'.
Successfully remade target file `%s'.
Target file `%s' needs remade under -q.
file->update_status >= 0 && file->update_status <= 2
_(knNupdate_file_1
# Implicit Rules
# No implicit rules.
# %u implicit rules, %u
(%.1f%%)
terminal.
(%.o)
BUG: num_pattern_rules wrong! %u != %u
%s # of strings in strcache: %d
%s strcache size: total = %d / max = %d / min = %d / avg = %d
%s strcache free: total = %d / max = %d / min = %d / avg = %d
%s # of strcache buffers: %d
strcache.c
best->bytesfree > len
add_string
environment under -e
(from `%s', line %lu)
define %s
endef
%s %s=
$(subst ,,%s)
# Variables
%s :
variable.c
%s%s%s
MAKE_VERSION
MAKEFILES
$(patsubst %/,%,$(dir $@))
$(patsubst %/,%,$(dir $%))
$(patsubst %/,%,$(dir $*))
$(patsubst %/,%,$(dir $<))
$(patsubst %/,%,$(dir $?))
$(patsubst %/,%,$(dir $^))
$(patsubst %/,%,$(dir $+))
$(notdir $@)
$(notdir $%)
$(notdir $*)
$(notdir $<)
$(notdir $?)
$(notdir $^)
$(notdir $+)
pop_variable_scope
# variable set hash-table stats:
# Pattern-specific Variable Values
# No pattern-specific variable values.
# %u pattern-specific variable values
current_variable_set_list->next != ((void *)0)
3.81
i486-pc-linux-gnu
# VPATH Search Paths
vpath %s
%s%c
# No `vpath' search paths.
# %u `vpath' search paths.
$(strip $(VPATH))
$(strip $(GPATH))
# No general (`VPATH' variable) search path.
# General (`VPATH' variable) search path:
Load=%ld/%ld=%.0f%%,
Rehash=%d,
Collisions=%ld/%ld=%.0f%%
Y@can't allocate %ld bytes for hash table: memory exhausted
.out .a .ln .o .c .cc .C .cpp .p .f .F .r .y .l .s .S .mod .sym .def .h .info .dvi .tex .texinfo .texi .txinfo .w .ch .web .sh .elc .el
/bin/sh
-c
#;"*?[]&|<>(){}$`^~!
Defined make macro "OMAKE " to "/usr/bin/make --no-print-directory"
Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC} ${SOBJSC})" and code []
Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF}
module multiprocessing found 2 cores: using make_np = 3
Defined make macro "MAKE_NP" to "3"
================================================================================
TEST configureMkdir from config.programs(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/programs.py:105)
TESTING: configureMkdir from config.programs(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/programs.py:105)
Make sure we can have mkdir automatically make intermediate directories
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/mkdir...not found
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/mkdir...not found
Checking for program /home/buildbot/pylith_deps/bin/mkdir...not found
Checking for program /home/buildbot/buildbot/bin/mkdir...not found
Checking for program /usr/local/sbin/mkdir...not found
Checking for program /usr/local/bin/mkdir...not found
Checking for program /usr/sbin/mkdir...not found
Checking for program /usr/bin/mkdir...not found
Checking for program /sbin/mkdir...not found
Checking for program /bin/mkdir...found
sh: /bin/mkdir -p .conftest/tmp
Executing: /bin/mkdir -p .conftest/tmp
sh:
Adding -p flag to /bin/mkdir -p to automatically create directories
Defined make macro "MKDIR" to "/bin/mkdir -p"
================================================================================
TEST configurePrograms from config.programs(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/programs.py:127)
TESTING: configurePrograms from config.programs(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/programs.py:127)
Check for the programs needed to build and run PETSc
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/sh...not found
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/sh...not found
Checking for program /home/buildbot/pylith_deps/bin/sh...not found
Checking for program /home/buildbot/buildbot/bin/sh...not found
Checking for program /usr/local/sbin/sh...not found
Checking for program /usr/local/bin/sh...not found
Checking for program /usr/sbin/sh...not found
Checking for program /usr/bin/sh...not found
Checking for program /sbin/sh...not found
Checking for program /bin/sh...found
Defined make macro "SHELL" to "/bin/sh"
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/sed...not found
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/sed...not found
Checking for program /home/buildbot/pylith_deps/bin/sed...not found
Checking for program /home/buildbot/buildbot/bin/sed...not found
Checking for program /usr/local/sbin/sed...not found
Checking for program /usr/local/bin/sed...not found
Checking for program /usr/sbin/sed...not found
Checking for program /usr/bin/sed...not found
Checking for program /sbin/sed...not found
Checking for program /bin/sed...found
Defined make macro "SED" to "/bin/sed"
All intermediate test results are stored in /tmp/petsc-5zlcDX
All intermediate test results are stored in /tmp/petsc-5zlcDX/config.programs
sh: /bin/sed -i s/sed/sd/g "/tmp/petsc-5zlcDX/config.programs/sed1"
Executing: /bin/sed -i s/sed/sd/g "/tmp/petsc-5zlcDX/config.programs/sed1"
sh:
Adding SEDINPLACE cmd: /bin/sed -i
Defined make macro "SEDINPLACE" to "/bin/sed -i"
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/mv...not found
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/mv...not found
Checking for program /home/buildbot/pylith_deps/bin/mv...not found
Checking for program /home/buildbot/buildbot/bin/mv...found
Defined make macro "MV" to "/home/buildbot/buildbot/bin/mv"
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/cp...not found
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/cp...not found
Checking for program /home/buildbot/pylith_deps/bin/cp...not found
Checking for program /home/buildbot/buildbot/bin/cp...found
Defined make macro "CP" to "/home/buildbot/buildbot/bin/cp"
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/grep...not found
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/grep...not found
Checking for program /home/buildbot/pylith_deps/bin/grep...not found
Checking for program /home/buildbot/buildbot/bin/grep...not found
Checking for program /usr/local/sbin/grep...not found
Checking for program /usr/local/bin/grep...not found
Checking for program /usr/sbin/grep...not found
Checking for program /usr/bin/grep...not found
Checking for program /sbin/grep...not found
Checking for program /bin/grep...found
Defined make macro "GREP" to "/bin/grep"
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/rm...not found
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/rm...not found
Checking for program /home/buildbot/pylith_deps/bin/rm...not found
Checking for program /home/buildbot/buildbot/bin/rm...found
Defined make macro "RM" to "/home/buildbot/buildbot/bin/rm -f"
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/diff...not found
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/diff...not found
Checking for program /home/buildbot/pylith_deps/bin/diff...not found
Checking for program /home/buildbot/buildbot/bin/diff...not found
Checking for program /usr/local/sbin/diff...not found
Checking for program /usr/local/bin/diff...not found
Checking for program /usr/sbin/diff...not found
Checking for program /usr/bin/diff...found
sh: "/usr/bin/diff" -w "/tmp/petsc-5zlcDX/config.programs/diff1" "/tmp/petsc-5zlcDX/config.programs/diff2"
Executing: "/usr/bin/diff" -w "/tmp/petsc-5zlcDX/config.programs/diff1" "/tmp/petsc-5zlcDX/config.programs/diff2"
sh:
Defined make macro "DIFF" to "/usr/bin/diff -w"
Checking for program /usr/ucb/ps...not found
Checking for program /usr/usb/ps...not found
Checking for program /home/buildbot/ps...not found
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/gzip...not found
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/gzip...not found
Checking for program /home/buildbot/pylith_deps/bin/gzip...not found
Checking for program /home/buildbot/buildbot/bin/gzip...not found
Checking for program /usr/local/sbin/gzip...not found
Checking for program /usr/local/bin/gzip...not found
Checking for program /usr/sbin/gzip...not found
Checking for program /usr/bin/gzip...not found
Checking for program /sbin/gzip...not found
Checking for program /bin/gzip...found
Defined make macro "GZIP" to "/bin/gzip"
Defined "HAVE_GZIP" to "1"
Defined make macro "PYTHON" to "/home/buildbot/install/pylith_linux_i686_binbot/bin/python"
================================================================================
TEST configureMercurial from config.sourceControl(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/sourceControl.py:23)
TESTING: configureMercurial from config.sourceControl(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/sourceControl.py:23)
Find the Mercurial executable
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/hg...not found
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/hg...not found
Checking for program /home/buildbot/pylith_deps/bin/hg...not found
Checking for program /home/buildbot/buildbot/bin/hg...not found
Checking for program /usr/local/sbin/hg...not found
Checking for program /usr/local/bin/hg...not found
Checking for program /usr/sbin/hg...not found
Checking for program /usr/bin/hg...found
Defined make macro "HG" to "hg"
sh: hg version -q
Executing: hg version -q
sh: Mercurial Distributed SCM (version 0.9.5)
================================================================================
TEST configureCVS from config.sourceControl(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/sourceControl.py:34)
TESTING: configureCVS from config.sourceControl(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/sourceControl.py:34)
Find the CVS executable
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/cvs...not found
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/cvs...not found
Checking for program /home/buildbot/pylith_deps/bin/cvs...not found
Checking for program /home/buildbot/buildbot/bin/cvs...not found
Checking for program /usr/local/sbin/cvs...not found
Checking for program /usr/local/bin/cvs...not found
Checking for program /usr/sbin/cvs...not found
Checking for program /usr/bin/cvs...not found
Checking for program /sbin/cvs...not found
Checking for program /bin/cvs...not found
Checking for program /usr/games/cvs...not found
Checking for program /home/buildbot/cvs...not found
================================================================================
TEST configureSubversion from config.sourceControl(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/sourceControl.py:43)
TESTING: configureSubversion from config.sourceControl(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/sourceControl.py:43)
Find the Subversion executable
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/svn...not found
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/svn...not found
Checking for program /home/buildbot/pylith_deps/bin/svn...not found
Checking for program /home/buildbot/buildbot/bin/svn...not found
Checking for program /usr/local/sbin/svn...not found
Checking for program /usr/local/bin/svn...not found
Checking for program /usr/sbin/svn...not found
Checking for program /usr/bin/svn...found
Defined make macro "SVN" to "svn"
sh: svn --version -q
Executing: svn --version -q
sh: 1.5.1
================================================================================
TEST configureDirectories from PETSc.utilities.petscdir(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/petscdir.py:28)
TESTING: configureDirectories from PETSc.utilities.petscdir(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/petscdir.py:28)
Checks PETSC_DIR and sets if not set
Version Information:
#define PETSC_VERSION_RELEASE 0
#define PETSC_VERSION_MAJOR 3
#define PETSC_VERSION_MINOR 2
#define PETSC_VERSION_SUBMINOR 0
#define PETSC_VERSION_PATCH 6
#define PETSC_VERSION_DATE "Sep, 8, 2011"
#define PETSC_VERSION_PATCH_DATE "unknown"
#define PETSC_VERSION_HG "unknown"
#define PETSC_VERSION_DATE_HG "unknown"
#define PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \
Defined make macro "DIR" to "/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries"
Defined "DIR" to ""/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries""
================================================================================
TEST configureExternalPackagesDir from PETSc.utilities.petscdir(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/petscdir.py:75)
TESTING: configureExternalPackagesDir from PETSc.utilities.petscdir(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/petscdir.py:75)
================================================================================
TEST configureInstallationMethod from PETSc.utilities.petscdir(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/petscdir.py:82)
TESTING: configureInstallationMethod from PETSc.utilities.petscdir(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/petscdir.py:82)
This is a Mercurial clone
Defined "VERSION_HG" to ""f7cef9644b64612473282b091d00a90d10304349""
Defined "VERSION_DATE_HG" to ""Wed Feb 08 17:37:31 2012 -0600""
Defined "VERSION_BS_HG" to ""c0a11d28270119c03bb00153ed87ca84ba2c0279""
Defined "VERSION_BS_DATE_HG" to ""Thu Feb 02 15:29:29 2012 -0600""
================================================================================
TEST configureETags from PETSc.utilities.Etags(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/Etags.py:27)
TESTING: configureETags from PETSc.utilities.Etags(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/Etags.py:27)
Determine if etags files exist and try to create otherwise
WARNING: ETags files have not been created
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/etags...not found
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/etags...not found
Checking for program /home/buildbot/pylith_deps/bin/etags...not found
Checking for program /home/buildbot/buildbot/bin/etags...not found
Checking for program /usr/local/sbin/etags...not found
Checking for program /usr/local/bin/etags...not found
Checking for program /usr/sbin/etags...not found
Checking for program /usr/bin/etags...not found
Checking for program /sbin/etags...not found
Checking for program /bin/etags...not found
Checking for program /usr/games/etags...not found
Checking for program /home/buildbot/etags...not found
Checking for program /home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/bin/win32fe/etags...not found
The etags command is not in your path, cannot build etags files
================================================================================
TEST getDatafilespath from PETSc.utilities.dataFilesPath(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/dataFilesPath.py:29)
TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/dataFilesPath.py:29)
Checks what DATAFILESPATH should be
Defined make macro "DATAFILESPATH" to "None"
================================================================================
TEST resetEnvCompilers from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:1469)
TESTING: resetEnvCompilers from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:1469)
===============================================================================
***** WARNING: CC found in enviornment variables - ignoring ******
===============================================================================
===============================================================================
***** WARNING: CXX found in enviornment variables - ignoring ******
===============================================================================
===============================================================================
***** WARNING: FC found in enviornment variables - ignoring ******
===============================================================================
===============================================================================
***** WARNING: F77 found in enviornment variables - ignoring ******
===============================================================================
================================================================================
TEST checkMPICompilerOverride from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:1449)
TESTING: checkMPICompilerOverride from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:1449)
Check if --with-mpi-dir is used along with CC CXX or FC compiler options.
This usually prevents mpi compilers from being used - so issue a warning
================================================================================
TEST checkVendor from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:379)
TESTING: checkVendor from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:379)
Determine the compiler vendor
Compiler vendor is ""
================================================================================
TEST checkInitialFlags from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:389)
TESTING: checkInitialFlags from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:389)
Initialize the compiler and linker flags
Pushing language C
Initialized CFLAGS to
Initialized CFLAGS to
Initialized LDFLAGS to
Popping language C
Pushing language CUDA
Initialized CUDAFLAGS to
Initialized CUDAFLAGS to
Initialized LDFLAGS to
Popping language CUDA
Pushing language Cxx
Initialized CXXFLAGS to -DMPICH_IGNORE_CXX_SEEK
Initialized CXX_CXXFLAGS to
Initialized LDFLAGS to
Popping language Cxx
Pushing language FC
Initialized FFLAGS to
Initialized FFLAGS to
Initialized LDFLAGS to
Popping language FC
Initialized CPPFLAGS to
Initialized CUDAPPFLAGS to
Initialized CXXCPPFLAGS to
Initialized CC_LINKER_FLAGS to []
Initialized CXX_LINKER_FLAGS to []
Initialized FC_LINKER_FLAGS to []
Initialized CUDAC_LINKER_FLAGS to []
Initialized sharedLibraryFlags to []
Initialized dynamicLibraryFlags to []
================================================================================
TEST checkCCompiler from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:503)
TESTING: checkCCompiler from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:503)
Locate a functional C compiler
sh: mpicc --help
Executing: mpicc --help
sh: Usage: gcc [options] file...
Options:
-pass-exit-codes Exit with highest error code from a phase
--help Display this information
--target-help Display target specific command line options
--help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...]
Display specific types of command line options
(Use '-v --help' to display command line options of sub-processes)
--version Display compiler version information
-dumpspecs Display all of the built in spec strings
-dumpversion Display the version of the compiler
-dumpmachine Display the compiler's target processor
-print-search-dirs Display the directories in the compiler's search path
-print-libgcc-file-name Display the name of the compiler's companion library
-print-file-name=<lib> Display the full path to library <lib>
-print-prog-name=<prog> Display the full path to compiler component <prog>
-print-multi-directory Display the root directory for versions of libgcc
-print-multi-lib Display the mapping between command line options and
multiple library search directories
-print-multi-os-directory Display the relative path to OS libraries
-print-sysroot Display the target libraries directory
-print-sysroot-headers-suffix Display the sysroot suffix used to find headers
-Wa,<options> Pass comma-separated <options> on to the assembler
-Wp,<options> Pass comma-separated <options> on to the preprocessor
-Wl,<options> Pass comma-separated <options> on to the linker
-Xassembler <arg> Pass <arg> on to the assembler
-Xpreprocessor <arg> Pass <arg> on to the preprocessor
-Xlinker <arg> Pass <arg> on to the linker
-combine Pass multiple source files to compiler at once
-save-temps Do not delete intermediate files
-save-temps=<arg> Do not delete intermediate files
-no-canonical-prefixes Do not canonicalize paths when building relative
prefixes to other gcc components
-pipe Use pipes rather than intermediate files
-time Time the execution of each subprocess
-specs=<file> Override built-in specs with the contents of <file>
-std=<standard> Assume that the input sources are for <standard>
--sysroot=<directory> Use <directory> as the root directory for headers
and libraries
-B <directory> Add <directory> to the compiler's search paths
-b <machine> Run gcc for target <machine>, if installed
-V <version> Run gcc version number <version>, if installed
-v Display the programs invoked by the compiler
-### Like -v but options quoted and commands not executed
-E Preprocess only; do not compile, assemble or link
-S Compile only; do not assemble or link
-c Compile and assemble, but do not link
-o <file> Place the output into <file>
-x <language> Specify the language of the following input files
Permissible languages include: c c++ assembler none
'none' means revert to the default behavior of
guessing the language based on the file's extension
Options starting with -g, -f, -m, -O, -W, or --param are automatically
passed on to the various sub-processes invoked by gcc. In order to pass
other options on to these processes the -W<letter> options must be used.
For bug reporting instructions, please see:
<http://gcc.gnu.org/bugs.html>.
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/mpicc...found
Defined make macro "CC" to "mpicc"
Pushing language C
All intermediate test results are stored in /tmp/petsc-5zlcDX/config.setCompilers
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Pushing language C
Popping language C
Pushing language CUDA
Popping language CUDA
Pushing language Cxx
Popping language Cxx
Pushing language FC
Popping language FC
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
Executing: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
sh:
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
Executing: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
sh:
Executing: /tmp/petsc-5zlcDX/config.setCompilers/conftest
sh: /tmp/petsc-5zlcDX/config.setCompilers/conftest
Executing: /tmp/petsc-5zlcDX/config.setCompilers/conftest
sh:
Popping language C
================================================================================
TEST checkCPreprocessor from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:538)
TESTING: checkCPreprocessor from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:538)
Locate a functional C preprocessor
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/mpicc...found
Defined make macro "CPP" to "mpicc -E"
Pushing language C
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.setCompilers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.setCompilers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.setCompilers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.setCompilers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.setCompilers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.setCompilers/conftest.c" 2
# 1 "/usr/include/stdlib.h" 1 3 4
# 25 "/usr/include/stdlib.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 26 "/usr/include/stdlib.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 323 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef long int wchar_t;
# 34 "/usr/include/stdlib.h" 2 3 4
# 96 "/usr/include/stdlib.h" 3 4
typedef struct
{
int quot;
int rem;
} div_t;
typedef struct
{
long int quot;
long int rem;
} ldiv_t;
# 140 "/usr/include/stdlib.h" 3 4
extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__)) ;
extern double atof (__const char *__nptr)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ;
extern int atoi (__const char *__nptr)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ;
extern long int atol (__const char *__nptr)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ;
__extension__ extern long long int atoll (__const char *__nptr)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ;
extern double strtod (__const char *__restrict __nptr,
char **__restrict __endptr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
# 182 "/usr/include/stdlib.h" 3 4
extern long int strtol (__const char *__restrict __nptr,
char **__restrict __endptr, int __base)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern unsigned long int strtoul (__const char *__restrict __nptr,
char **__restrict __endptr, int __base)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
__extension__
extern long long int strtoq (__const char *__restrict __nptr,
char **__restrict __endptr, int __base)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
__extension__
extern unsigned long long int strtouq (__const char *__restrict __nptr,
char **__restrict __endptr, int __base)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
__extension__
extern long long int strtoll (__const char *__restrict __nptr,
char **__restrict __endptr, int __base)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
__extension__
extern unsigned long long int strtoull (__const char *__restrict __nptr,
char **__restrict __endptr, int __base)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
# 311 "/usr/include/stdlib.h" 3 4
extern char *l64a (long int __n) __attribute__ ((__nothrow__)) ;
extern long int a64l (__const char *__s)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ;
# 1 "/usr/include/sys/types.h" 1 3 4
# 29 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 32 "/usr/include/sys/types.h" 2 3 4
typedef __u_char u_char;
typedef __u_short u_short;
typedef __u_int u_int;
typedef __u_long u_long;
typedef __quad_t quad_t;
typedef __u_quad_t u_quad_t;
typedef __fsid_t fsid_t;
typedef __loff_t loff_t;
typedef __ino_t ino_t;
# 62 "/usr/include/sys/types.h" 3 4
typedef __dev_t dev_t;
typedef __gid_t gid_t;
typedef __mode_t mode_t;
typedef __nlink_t nlink_t;
typedef __uid_t uid_t;
typedef __off_t off_t;
# 100 "/usr/include/sys/types.h" 3 4
typedef __pid_t pid_t;
typedef __id_t id_t;
typedef __ssize_t ssize_t;
typedef __daddr_t daddr_t;
typedef __caddr_t caddr_t;
typedef __key_t key_t;
# 133 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/time.h" 1 3 4
# 75 "/usr/include/time.h" 3 4
typedef __time_t time_t;
# 93 "/usr/include/time.h" 3 4
typedef __clockid_t clockid_t;
# 105 "/usr/include/time.h" 3 4
typedef __timer_t timer_t;
# 134 "/usr/include/sys/types.h" 2 3 4
# 147 "/usr/include/sys/types.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 148 "/usr/include/sys/types.h" 2 3 4
typedef unsigned long int ulong;
typedef unsigned short int ushort;
typedef unsigned int uint;
# 195 "/usr/include/sys/types.h" 3 4
typedef int int8_t __attribute__ ((__mode__ (__QI__)));
typedef int int16_t __attribute__ ((__mode__ (__HI__)));
typedef int int32_t __attribute__ ((__mode__ (__SI__)));
typedef int int64_t __attribute__ ((__mode__ (__DI__)));
typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__)));
typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__)));
typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__)));
typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__)));
typedef int register_t __attribute__ ((__mode__ (__word__)));
# 217 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/endian.h" 1 3 4
# 37 "/usr/include/endian.h" 3 4
# 1 "/usr/include/bits/endian.h" 1 3 4
# 38 "/usr/include/endian.h" 2 3 4
# 218 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/select.h" 1 3 4
# 31 "/usr/include/sys/select.h" 3 4
# 1 "/usr/include/bits/select.h" 1 3 4
# 32 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/sigset.h" 1 3 4
# 24 "/usr/include/bits/sigset.h" 3 4
typedef int __sig_atomic_t;
typedef struct
{
unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))];
} __sigset_t;
# 35 "/usr/include/sys/select.h" 2 3 4
typedef __sigset_t sigset_t;
# 1 "/usr/include/time.h" 1 3 4
# 121 "/usr/include/time.h" 3 4
struct timespec
{
__time_t tv_sec;
long int tv_nsec;
};
# 45 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/time.h" 1 3 4
# 69 "/usr/include/bits/time.h" 3 4
struct timeval
{
__time_t tv_sec;
__suseconds_t tv_usec;
};
# 47 "/usr/include/sys/select.h" 2 3 4
typedef __suseconds_t suseconds_t;
typedef long int __fd_mask;
# 67 "/usr/include/sys/select.h" 3 4
typedef struct
{
__fd_mask __fds_bits[1024 / (8 * sizeof (__fd_mask))];
} fd_set;
typedef __fd_mask fd_mask;
# 99 "/usr/include/sys/select.h" 3 4
# 109 "/usr/include/sys/select.h" 3 4
extern int select (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
struct timeval *__restrict __timeout);
# 121 "/usr/include/sys/select.h" 3 4
extern int pselect (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
const struct timespec *__restrict __timeout,
const __sigset_t *__restrict __sigmask);
# 221 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/sysmacros.h" 1 3 4
# 30 "/usr/include/sys/sysmacros.h" 3 4
__extension__
extern unsigned int gnu_dev_major (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned int gnu_dev_minor (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned long long int gnu_dev_makedev (unsigned int __major,
unsigned int __minor)
__attribute__ ((__nothrow__));
# 224 "/usr/include/sys/types.h" 2 3 4
# 235 "/usr/include/sys/types.h" 3 4
typedef __blkcnt_t blkcnt_t;
typedef __fsblkcnt_t fsblkcnt_t;
typedef __fsfilcnt_t fsfilcnt_t;
# 270 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/pthreadtypes.h" 1 3 4
# 23 "/usr/include/bits/pthreadtypes.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 24 "/usr/include/bits/pthreadtypes.h" 2 3 4
# 50 "/usr/include/bits/pthreadtypes.h" 3 4
typedef unsigned long int pthread_t;
typedef union
{
char __size[36];
long int __align;
} pthread_attr_t;
# 67 "/usr/include/bits/pthreadtypes.h" 3 4
typedef struct __pthread_internal_slist
{
struct __pthread_internal_slist *__next;
} __pthread_slist_t;
typedef union
{
struct __pthread_mutex_s
{
int __lock;
unsigned int __count;
int __owner;
int __kind;
unsigned int __nusers;
__extension__ union
{
int __spins;
__pthread_slist_t __list;
};
} __data;
char __size[24];
long int __align;
} pthread_mutex_t;
typedef union
{
char __size[4];
int __align;
} pthread_mutexattr_t;
typedef union
{
struct
{
int __lock;
unsigned int __futex;
__extension__ unsigned long long int __total_seq;
__extension__ unsigned long long int __wakeup_seq;
__extension__ unsigned long long int __woken_seq;
void *__mutex;
unsigned int __nwaiters;
unsigned int __broadcast_seq;
} __data;
char __size[48];
__extension__ long long int __align;
} pthread_cond_t;
typedef union
{
char __size[4];
int __align;
} pthread_condattr_t;
typedef unsigned int pthread_key_t;
typedef int pthread_once_t;
typedef union
{
# 170 "/usr/include/bits/pthreadtypes.h" 3 4
struct
{
int __lock;
unsigned int __nr_readers;
unsigned int __readers_wakeup;
unsigned int __writer_wakeup;
unsigned int __nr_readers_queued;
unsigned int __nr_writers_queued;
unsigned char __flags;
unsigned char __shared;
unsigned char __pad1;
unsigned char __pad2;
int __writer;
} __data;
char __size[32];
long int __align;
} pthread_rwlock_t;
typedef union
{
char __size[8];
long int __align;
} pthread_rwlockattr_t;
typedef volatile int pthread_spinlock_t;
typedef union
{
char __size[20];
long int __align;
} pthread_barrier_t;
typedef union
{
char __size[4];
int __align;
} pthread_barrierattr_t;
# 271 "/usr/include/sys/types.h" 2 3 4
# 321 "/usr/include/stdlib.h" 2 3 4
extern long int random (void) __attribute__ ((__nothrow__));
extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__));
extern char *initstate (unsigned int __seed, char *__statebuf,
size_t __statelen) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2)));
extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
struct random_data
{
int32_t *fptr;
int32_t *rptr;
int32_t *state;
int rand_type;
int rand_deg;
int rand_sep;
int32_t *end_ptr;
};
extern int random_r (struct random_data *__restrict __buf,
int32_t *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int srandom_r (unsigned int __seed, struct random_data *__buf)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2)));
extern int initstate_r (unsigned int __seed, char *__restrict __statebuf,
size_t __statelen,
struct random_data *__restrict __buf)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 4)));
extern int setstate_r (char *__restrict __statebuf,
struct random_data *__restrict __buf)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int rand (void) __attribute__ ((__nothrow__));
extern void srand (unsigned int __seed) __attribute__ ((__nothrow__));
extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__));
extern double drand48 (void) __attribute__ ((__nothrow__));
extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern long int lrand48 (void) __attribute__ ((__nothrow__));
extern long int nrand48 (unsigned short int __xsubi[3])
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern long int mrand48 (void) __attribute__ ((__nothrow__));
extern long int jrand48 (unsigned short int __xsubi[3])
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern void srand48 (long int __seedval) __attribute__ ((__nothrow__));
extern unsigned short int *seed48 (unsigned short int __seed16v[3])
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
struct drand48_data
{
unsigned short int __x[3];
unsigned short int __old_x[3];
unsigned short int __c;
unsigned short int __init;
unsigned long long int __a;
};
extern int drand48_r (struct drand48_data *__restrict __buffer,
double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int erand48_r (unsigned short int __xsubi[3],
struct drand48_data *__restrict __buffer,
double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int lrand48_r (struct drand48_data *__restrict __buffer,
long int *__restrict __result)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int nrand48_r (unsigned short int __xsubi[3],
struct drand48_data *__restrict __buffer,
long int *__restrict __result)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int mrand48_r (struct drand48_data *__restrict __buffer,
long int *__restrict __result)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int jrand48_r (unsigned short int __xsubi[3],
struct drand48_data *__restrict __buffer,
long int *__restrict __result)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int srand48_r (long int __seedval, struct drand48_data *__buffer)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2)));
extern int seed48_r (unsigned short int __seed16v[3],
struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int lcong48_r (unsigned short int __param[7],
struct drand48_data *__buffer)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern void *malloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ;
extern void *calloc (size_t __nmemb, size_t __size)
__attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ;
extern void *realloc (void *__ptr, size_t __size)
__attribute__ ((__nothrow__)) __attribute__ ((__warn_unused_result__));
extern void free (void *__ptr) __attribute__ ((__nothrow__));
extern void cfree (void *__ptr) __attribute__ ((__nothrow__));
# 1 "/usr/include/alloca.h" 1 3 4
# 25 "/usr/include/alloca.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 26 "/usr/include/alloca.h" 2 3 4
extern void *alloca (size_t __size) __attribute__ ((__nothrow__));
# 498 "/usr/include/stdlib.h" 2 3 4
extern void *valloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ;
extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern void abort (void) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__));
extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern void exit (int __status) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__));
# 543 "/usr/include/stdlib.h" 3 4
extern char *getenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern char *__secure_getenv (__const char *__name)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern int putenv (char *__string) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int setenv (__const char *__name, __const char *__value, int __replace)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2)));
extern int unsetenv (__const char *__name) __attribute__ ((__nothrow__));
extern int clearenv (void) __attribute__ ((__nothrow__));
# 583 "/usr/include/stdlib.h" 3 4
extern char *mktemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
# 594 "/usr/include/stdlib.h" 3 4
extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ;
# 614 "/usr/include/stdlib.h" 3 4
extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
# 640 "/usr/include/stdlib.h" 3 4
extern int system (__const char *__command) ;
# 662 "/usr/include/stdlib.h" 3 4
extern char *realpath (__const char *__restrict __name,
char *__restrict __resolved) __attribute__ ((__nothrow__)) ;
typedef int (*__compar_fn_t) (__const void *, __const void *);
extern void *bsearch (__const void *__key, __const void *__base,
size_t __nmemb, size_t __size, __compar_fn_t __compar)
__attribute__ ((__nonnull__ (1, 2, 5))) ;
extern void qsort (void *__base, size_t __nmemb, size_t __size,
__compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4)));
extern int abs (int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ;
extern long int labs (long int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ;
extern div_t div (int __numer, int __denom)
__attribute__ ((__nothrow__)) __attribute__ ((__const__)) ;
extern ldiv_t ldiv (long int __numer, long int __denom)
__attribute__ ((__nothrow__)) __attribute__ ((__const__)) ;
# 727 "/usr/include/stdlib.h" 3 4
extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt,
int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ;
extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt,
int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ;
extern char *gcvt (double __value, int __ndigit, char *__buf)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ;
extern char *qecvt (long double __value, int __ndigit,
int *__restrict __decpt, int *__restrict __sign)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ;
extern char *qfcvt (long double __value, int __ndigit,
int *__restrict __decpt, int *__restrict __sign)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ;
extern char *qgcvt (long double __value, int __ndigit, char *__buf)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ;
extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt,
int *__restrict __sign, char *__restrict __buf,
size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5)));
extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt,
int *__restrict __sign, char *__restrict __buf,
size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5)));
extern int qecvt_r (long double __value, int __ndigit,
int *__restrict __decpt, int *__restrict __sign,
char *__restrict __buf, size_t __len)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5)));
extern int qfcvt_r (long double __value, int __ndigit,
int *__restrict __decpt, int *__restrict __sign,
char *__restrict __buf, size_t __len)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5)));
extern int mblen (__const char *__s, size_t __n) __attribute__ ((__nothrow__)) ;
extern int mbtowc (wchar_t *__restrict __pwc,
__const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)) ;
extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__)) ;
extern size_t mbstowcs (wchar_t *__restrict __pwcs,
__const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__));
extern size_t wcstombs (char *__restrict __s,
__const wchar_t *__restrict __pwcs, size_t __n)
__attribute__ ((__nothrow__));
extern int rpmatch (__const char *__response) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
# 832 "/usr/include/stdlib.h" 3 4
extern int posix_openpt (int __oflag) ;
# 867 "/usr/include/stdlib.h" 3 4
extern int getloadavg (double __loadavg[], int __nelem)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 883 "/usr/include/stdlib.h" 3 4
# 3 "/tmp/petsc-5zlcDX/config.setCompilers/conftest.c" 2
Popping language C
================================================================================
TEST checkCUDACompiler from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:572)
TESTING: checkCUDACompiler from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:572)
Locate a functional CUDA compiler
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/nvcc...not found
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/nvcc...not found
Checking for program /home/buildbot/pylith_deps/bin/nvcc...not found
Checking for program /home/buildbot/buildbot/bin/nvcc...not found
Checking for program /usr/local/sbin/nvcc...not found
Checking for program /usr/local/bin/nvcc...not found
Checking for program /usr/sbin/nvcc...not found
Checking for program /usr/bin/nvcc...not found
Checking for program /sbin/nvcc...not found
Checking for program /bin/nvcc...not found
Checking for program /usr/games/nvcc...not found
Checking for program /home/buildbot/nvcc...not found
Checking for program /home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/bin/win32fe/nvcc...not found
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/nvcc...not found
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/nvcc...not found
Checking for program /home/buildbot/pylith_deps/bin/nvcc...not found
Checking for program /home/buildbot/buildbot/bin/nvcc...not found
Checking for program /usr/local/sbin/nvcc...not found
Checking for program /usr/local/bin/nvcc...not found
Checking for program /usr/sbin/nvcc...not found
Checking for program /usr/bin/nvcc...not found
Checking for program /sbin/nvcc...not found
Checking for program /bin/nvcc...not found
Checking for program /usr/games/nvcc...not found
Checking for program /home/buildbot/nvcc...not found
Checking for program /home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/bin/win32fe/nvcc...not found
================================================================================
TEST checkCUDAPreprocessor from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:610)
TESTING: checkCUDAPreprocessor from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:610)
Locate a functional CUDA preprocessor
================================================================================
TEST checkCxxCompiler from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:713)
TESTING: checkCxxCompiler from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:713)
Locate a functional Cxx compiler
sh: mpicxx --help
Executing: mpicxx --help
sh: Usage: g++ [options] file...
Options:
-pass-exit-codes Exit with highest error code from a phase
--help Display this information
--target-help Display target specific command line options
--help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...]
Display specific types of command line options
(Use '-v --help' to display command line options of sub-processes)
--version Display compiler version information
-dumpspecs Display all of the built in spec strings
-dumpversion Display the version of the compiler
-dumpmachine Display the compiler's target processor
-print-search-dirs Display the directories in the compiler's search path
-print-libgcc-file-name Display the name of the compiler's companion library
-print-file-name=<lib> Display the full path to library <lib>
-print-prog-name=<prog> Display the full path to compiler component <prog>
-print-multi-directory Display the root directory for versions of libgcc
-print-multi-lib Display the mapping between command line options and
multiple library search directories
-print-multi-os-directory Display the relative path to OS libraries
-print-sysroot Display the target libraries directory
-print-sysroot-headers-suffix Display the sysroot suffix used to find headers
-Wa,<options> Pass comma-separated <options> on to the assembler
-Wp,<options> Pass comma-separated <options> on to the preprocessor
-Wl,<options> Pass comma-separated <options> on to the linker
-Xassembler <arg> Pass <arg> on to the assembler
-Xpreprocessor <arg> Pass <arg> on to the preprocessor
-Xlinker <arg> Pass <arg> on to the linker
-combine Pass multiple source files to compiler at once
-save-temps Do not delete intermediate files
-save-temps=<arg> Do not delete intermediate files
-no-canonical-prefixes Do not canonicalize paths when building relative
prefixes to other gcc components
-pipe Use pipes rather than intermediate files
-time Time the execution of each subprocess
-specs=<file> Override built-in specs with the contents of <file>
-std=<standard> Assume that the input sources are for <standard>
--sysroot=<directory> Use <directory> as the root directory for headers
and libraries
-B <directory> Add <directory> to the compiler's search paths
-b <machine> Run gcc for target <machine>, if installed
-V <version> Run gcc version number <version>, if installed
-v Display the programs invoked by the compiler
-### Like -v but options quoted and commands not executed
-E Preprocess only; do not compile, assemble or link
-S Compile only; do not assemble or link
-c Compile and assemble, but do not link
-o <file> Place the output into <file>
-x <language> Specify the language of the following input files
Permissible languages include: c c++ assembler none
'none' means revert to the default behavior of
guessing the language based on the file's extension
Options starting with -g, -f, -m, -O, -W, or --param are automatically
passed on to the various sub-processes invoked by g++. In order to pass
other options on to these processes the -W<letter> options must be used.
For bug reporting instructions, please see:
<http://gcc.gnu.org/bugs.html>.
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/mpicxx...found
Defined make macro "CXX" to "mpicxx"
Pushing language Cxx
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -DMPICH_IGNORE_CXX_SEEK /tmp/petsc-5zlcDX/config.setCompilers/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -DMPICH_IGNORE_CXX_SEEK /tmp/petsc-5zlcDX/config.setCompilers/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -DMPICH_IGNORE_CXX_SEEK /tmp/petsc-5zlcDX/config.setCompilers/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -DMPICH_IGNORE_CXX_SEEK /tmp/petsc-5zlcDX/config.setCompilers/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Pushing language C
Popping language C
Pushing language CUDA
Popping language CUDA
Pushing language Cxx
Popping language Cxx
Pushing language FC
Popping language FC
Pushing language CXX
Popping language CXX
sh: mpicxx -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -DMPICH_IGNORE_CXX_SEEK /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
Executing: mpicxx -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -DMPICH_IGNORE_CXX_SEEK /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
sh:
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -DMPICH_IGNORE_CXX_SEEK /tmp/petsc-5zlcDX/config.setCompilers/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -DMPICH_IGNORE_CXX_SEEK /tmp/petsc-5zlcDX/config.setCompilers/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Pushing language CXX
Popping language CXX
sh: mpicxx -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -DMPICH_IGNORE_CXX_SEEK /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
Executing: mpicxx -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -DMPICH_IGNORE_CXX_SEEK /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
sh:
Executing: /tmp/petsc-5zlcDX/config.setCompilers/conftest
sh: /tmp/petsc-5zlcDX/config.setCompilers/conftest
Executing: /tmp/petsc-5zlcDX/config.setCompilers/conftest
sh:
Popping language Cxx
================================================================================
TEST checkCxxPreprocessor from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:751)
TESTING: checkCxxPreprocessor from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:751)
Locate a functional Cxx preprocessor
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/mpicxx...found
Defined make macro "CXXCPP" to "mpicxx -E"
Pushing language Cxx
sh: mpicxx -E -I/tmp/petsc-5zlcDX/config.setCompilers /tmp/petsc-5zlcDX/config.setCompilers/conftest.cc
Executing: mpicxx -E -I/tmp/petsc-5zlcDX/config.setCompilers /tmp/petsc-5zlcDX/config.setCompilers/conftest.cc
sh: # 1 "/tmp/petsc-5zlcDX/config.setCompilers/conftest.cc"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.setCompilers/conftest.cc"
# 1 "/tmp/petsc-5zlcDX/config.setCompilers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.setCompilers/conftest.cc" 2
# 1 "/tmp/petsc-5zlcDX/config.setCompilers/conffix.h" 1
extern "C" {
}
# 3 "/tmp/petsc-5zlcDX/config.setCompilers/conftest.cc" 2
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../../include/c++/4.5.2/cstdlib" 1 3
# 41 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../../include/c++/4.5.2/cstdlib" 3
# 42 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../../include/c++/4.5.2/cstdlib" 3
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../../include/c++/4.5.2/i686-pc-linux-gnu/bits/c++config.h" 1 3
# 275 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../../include/c++/4.5.2/i686-pc-linux-gnu/bits/c++config.h" 3
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../../include/c++/4.5.2/i686-pc-linux-gnu/bits/os_defines.h" 1 3
# 39 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../../include/c++/4.5.2/i686-pc-linux-gnu/bits/os_defines.h" 3
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 40 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../../include/c++/4.5.2/i686-pc-linux-gnu/bits/os_defines.h" 2 3
# 276 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../../include/c++/4.5.2/i686-pc-linux-gnu/bits/c++config.h" 2 3
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../../include/c++/4.5.2/i686-pc-linux-gnu/bits/cpu_defines.h" 1 3
# 279 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../../include/c++/4.5.2/i686-pc-linux-gnu/bits/c++config.h" 2 3
# 44 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../../include/c++/4.5.2/cstdlib" 2 3
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../../include/c++/4.5.2/cstddef" 1 3
# 41 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../../include/c++/4.5.2/cstddef" 3
# 42 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../../include/c++/4.5.2/cstddef" 3
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 149 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef int ptrdiff_t;
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 45 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../../include/c++/4.5.2/cstddef" 2 3
namespace std __attribute__ ((__visibility__ ("default"))) {
using ::ptrdiff_t;
using ::size_t;
}
# 45 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../../include/c++/4.5.2/cstdlib" 2 3
# 68 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../../include/c++/4.5.2/cstdlib" 3
# 1 "/usr/include/stdlib.h" 1 3 4
# 33 "/usr/include/stdlib.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 34 "/usr/include/stdlib.h" 2 3 4
extern "C" {
# 1 "/usr/include/bits/waitflags.h" 1 3 4
# 43 "/usr/include/stdlib.h" 2 3 4
# 1 "/usr/include/bits/waitstatus.h" 1 3 4
# 65 "/usr/include/bits/waitstatus.h" 3 4
# 1 "/usr/include/endian.h" 1 3 4
# 37 "/usr/include/endian.h" 3 4
# 1 "/usr/include/bits/endian.h" 1 3 4
# 38 "/usr/include/endian.h" 2 3 4
# 66 "/usr/include/bits/waitstatus.h" 2 3 4
union wait
{
int w_status;
struct
{
unsigned int __w_termsig:7;
unsigned int __w_coredump:1;
unsigned int __w_retcode:8;
unsigned int:16;
} __wait_terminated;
struct
{
unsigned int __w_stopval:8;
unsigned int __w_stopsig:8;
unsigned int:16;
} __wait_stopped;
};
# 44 "/usr/include/stdlib.h" 2 3 4
# 96 "/usr/include/stdlib.h" 3 4
typedef struct
{
int quot;
int rem;
} div_t;
typedef struct
{
long int quot;
long int rem;
} ldiv_t;
__extension__ typedef struct
{
long long int quot;
long long int rem;
} lldiv_t;
# 140 "/usr/include/stdlib.h" 3 4
extern size_t __ctype_get_mb_cur_max (void) throw () ;
extern double atof (__const char *__nptr)
throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ;
extern int atoi (__const char *__nptr)
throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ;
extern long int atol (__const char *__nptr)
throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ;
__extension__ extern long long int atoll (__const char *__nptr)
throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ;
extern double strtod (__const char *__restrict __nptr,
char **__restrict __endptr)
throw () __attribute__ ((__nonnull__ (1))) ;
extern float strtof (__const char *__restrict __nptr,
char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))) ;
extern long double strtold (__const char *__restrict __nptr,
char **__restrict __endptr)
throw () __attribute__ ((__nonnull__ (1))) ;
extern long int strtol (__const char *__restrict __nptr,
char **__restrict __endptr, int __base)
throw () __attribute__ ((__nonnull__ (1))) ;
extern unsigned long int strtoul (__const char *__restrict __nptr,
char **__restrict __endptr, int __base)
throw () __attribute__ ((__nonnull__ (1))) ;
__extension__
extern long long int strtoq (__const char *__restrict __nptr,
char **__restrict __endptr, int __base)
throw () __attribute__ ((__nonnull__ (1))) ;
__extension__
extern unsigned long long int strtouq (__const char *__restrict __nptr,
char **__restrict __endptr, int __base)
throw () __attribute__ ((__nonnull__ (1))) ;
__extension__
extern long long int strtoll (__const char *__restrict __nptr,
char **__restrict __endptr, int __base)
throw () __attribute__ ((__nonnull__ (1))) ;
__extension__
extern unsigned long long int strtoull (__const char *__restrict __nptr,
char **__restrict __endptr, int __base)
throw () __attribute__ ((__nonnull__ (1))) ;
# 236 "/usr/include/stdlib.h" 3 4
# 1 "/usr/include/xlocale.h" 1 3 4
# 28 "/usr/include/xlocale.h" 3 4
typedef struct __locale_struct
{
struct locale_data *__locales[13];
const unsigned short int *__ctype_b;
const int *__ctype_tolower;
const int *__ctype_toupper;
const char *__names[13];
} *__locale_t;
# 237 "/usr/include/stdlib.h" 2 3 4
extern long int strtol_l (__const char *__restrict __nptr,
char **__restrict __endptr, int __base,
__locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ;
extern unsigned long int strtoul_l (__const char *__restrict __nptr,
char **__restrict __endptr,
int __base, __locale_t __loc)
throw () __attribute__ ((__nonnull__ (1, 4))) ;
__extension__
extern long long int strtoll_l (__const char *__restrict __nptr,
char **__restrict __endptr, int __base,
__locale_t __loc)
throw () __attribute__ ((__nonnull__ (1, 4))) ;
__extension__
extern unsigned long long int strtoull_l (__const char *__restrict __nptr,
char **__restrict __endptr,
int __base, __locale_t __loc)
throw () __attribute__ ((__nonnull__ (1, 4))) ;
extern double strtod_l (__const char *__restrict __nptr,
char **__restrict __endptr, __locale_t __loc)
throw () __attribute__ ((__nonnull__ (1, 3))) ;
extern float strtof_l (__const char *__restrict __nptr,
char **__restrict __endptr, __locale_t __loc)
throw () __attribute__ ((__nonnull__ (1, 3))) ;
extern long double strtold_l (__const char *__restrict __nptr,
char **__restrict __endptr,
__locale_t __loc)
throw () __attribute__ ((__nonnull__ (1, 3))) ;
# 311 "/usr/include/stdlib.h" 3 4
extern char *l64a (long int __n) throw () ;
extern long int a64l (__const char *__s)
throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ;
# 1 "/usr/include/sys/types.h" 1 3 4
# 29 "/usr/include/sys/types.h" 3 4
extern "C" {
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 32 "/usr/include/sys/types.h" 2 3 4
typedef __u_char u_char;
typedef __u_short u_short;
typedef __u_int u_int;
typedef __u_long u_long;
typedef __quad_t quad_t;
typedef __u_quad_t u_quad_t;
typedef __fsid_t fsid_t;
typedef __loff_t loff_t;
typedef __ino_t ino_t;
typedef __ino64_t ino64_t;
typedef __dev_t dev_t;
typedef __gid_t gid_t;
typedef __mode_t mode_t;
typedef __nlink_t nlink_t;
typedef __uid_t uid_t;
typedef __off_t off_t;
typedef __off64_t off64_t;
typedef __pid_t pid_t;
typedef __id_t id_t;
typedef __ssize_t ssize_t;
typedef __daddr_t daddr_t;
typedef __caddr_t caddr_t;
typedef __key_t key_t;
# 133 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/time.h" 1 3 4
# 59 "/usr/include/time.h" 3 4
typedef __clock_t clock_t;
# 75 "/usr/include/time.h" 3 4
typedef __time_t time_t;
# 93 "/usr/include/time.h" 3 4
typedef __clockid_t clockid_t;
# 105 "/usr/include/time.h" 3 4
typedef __timer_t timer_t;
# 134 "/usr/include/sys/types.h" 2 3 4
typedef __useconds_t useconds_t;
typedef __suseconds_t suseconds_t;
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 148 "/usr/include/sys/types.h" 2 3 4
typedef unsigned long int ulong;
typedef unsigned short int ushort;
typedef unsigned int uint;
# 195 "/usr/include/sys/types.h" 3 4
typedef int int8_t __attribute__ ((__mode__ (__QI__)));
typedef int int16_t __attribute__ ((__mode__ (__HI__)));
typedef int int32_t __attribute__ ((__mode__ (__SI__)));
typedef int int64_t __attribute__ ((__mode__ (__DI__)));
typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__)));
typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__)));
typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__)));
typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__)));
typedef int register_t __attribute__ ((__mode__ (__word__)));
# 220 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/sys/select.h" 1 3 4
# 31 "/usr/include/sys/select.h" 3 4
# 1 "/usr/include/bits/select.h" 1 3 4
# 32 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/sigset.h" 1 3 4
# 24 "/usr/include/bits/sigset.h" 3 4
typedef int __sig_atomic_t;
typedef struct
{
unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))];
} __sigset_t;
# 35 "/usr/include/sys/select.h" 2 3 4
typedef __sigset_t sigset_t;
# 1 "/usr/include/time.h" 1 3 4
# 121 "/usr/include/time.h" 3 4
struct timespec
{
__time_t tv_sec;
long int tv_nsec;
};
# 45 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/time.h" 1 3 4
# 69 "/usr/include/bits/time.h" 3 4
struct timeval
{
__time_t tv_sec;
__suseconds_t tv_usec;
};
# 47 "/usr/include/sys/select.h" 2 3 4
# 55 "/usr/include/sys/select.h" 3 4
typedef long int __fd_mask;
# 67 "/usr/include/sys/select.h" 3 4
typedef struct
{
__fd_mask fds_bits[1024 / (8 * sizeof (__fd_mask))];
} fd_set;
typedef __fd_mask fd_mask;
# 99 "/usr/include/sys/select.h" 3 4
extern "C" {
# 109 "/usr/include/sys/select.h" 3 4
extern int select (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
struct timeval *__restrict __timeout);
# 121 "/usr/include/sys/select.h" 3 4
extern int pselect (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
const struct timespec *__restrict __timeout,
const __sigset_t *__restrict __sigmask);
}
# 221 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/sysmacros.h" 1 3 4
# 30 "/usr/include/sys/sysmacros.h" 3 4
__extension__
extern unsigned int gnu_dev_major (unsigned long long int __dev)
throw ();
__extension__
extern unsigned int gnu_dev_minor (unsigned long long int __dev)
throw ();
__extension__
extern unsigned long long int gnu_dev_makedev (unsigned int __major,
unsigned int __minor)
throw ();
# 224 "/usr/include/sys/types.h" 2 3 4
typedef __blksize_t blksize_t;
typedef __blkcnt_t blkcnt_t;
typedef __fsblkcnt_t fsblkcnt_t;
typedef __fsfilcnt_t fsfilcnt_t;
# 262 "/usr/include/sys/types.h" 3 4
typedef __blkcnt64_t blkcnt64_t;
typedef __fsblkcnt64_t fsblkcnt64_t;
typedef __fsfilcnt64_t fsfilcnt64_t;
# 1 "/usr/include/bits/pthreadtypes.h" 1 3 4
# 23 "/usr/include/bits/pthreadtypes.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 24 "/usr/include/bits/pthreadtypes.h" 2 3 4
# 50 "/usr/include/bits/pthreadtypes.h" 3 4
typedef unsigned long int pthread_t;
typedef union
{
char __size[36];
long int __align;
} pthread_attr_t;
# 67 "/usr/include/bits/pthreadtypes.h" 3 4
typedef struct __pthread_internal_slist
{
struct __pthread_internal_slist *__next;
} __pthread_slist_t;
typedef union
{
struct __pthread_mutex_s
{
int __lock;
unsigned int __count;
int __owner;
int __kind;
unsigned int __nusers;
__extension__ union
{
int __spins;
__pthread_slist_t __list;
};
} __data;
char __size[24];
long int __align;
} pthread_mutex_t;
typedef union
{
char __size[4];
int __align;
} pthread_mutexattr_t;
typedef union
{
struct
{
int __lock;
unsigned int __futex;
__extension__ unsigned long long int __total_seq;
__extension__ unsigned long long int __wakeup_seq;
__extension__ unsigned long long int __woken_seq;
void *__mutex;
unsigned int __nwaiters;
unsigned int __broadcast_seq;
} __data;
char __size[48];
__extension__ long long int __align;
} pthread_cond_t;
typedef union
{
char __size[4];
int __align;
} pthread_condattr_t;
typedef unsigned int pthread_key_t;
typedef int pthread_once_t;
typedef union
{
# 170 "/usr/include/bits/pthreadtypes.h" 3 4
struct
{
int __lock;
unsigned int __nr_readers;
unsigned int __readers_wakeup;
unsigned int __writer_wakeup;
unsigned int __nr_readers_queued;
unsigned int __nr_writers_queued;
unsigned char __flags;
unsigned char __shared;
unsigned char __pad1;
unsigned char __pad2;
int __writer;
} __data;
char __size[32];
long int __align;
} pthread_rwlock_t;
typedef union
{
char __size[8];
long int __align;
} pthread_rwlockattr_t;
typedef volatile int pthread_spinlock_t;
typedef union
{
char __size[20];
long int __align;
} pthread_barrier_t;
typedef union
{
char __size[4];
int __align;
} pthread_barrierattr_t;
# 271 "/usr/include/sys/types.h" 2 3 4
}
# 321 "/usr/include/stdlib.h" 2 3 4
extern long int random (void) throw ();
extern void srandom (unsigned int __seed) throw ();
extern char *initstate (unsigned int __seed, char *__statebuf,
size_t __statelen) throw () __attribute__ ((__nonnull__ (2)));
extern char *setstate (char *__statebuf) throw () __attribute__ ((__nonnull__ (1)));
struct random_data
{
int32_t *fptr;
int32_t *rptr;
int32_t *state;
int rand_type;
int rand_deg;
int rand_sep;
int32_t *end_ptr;
};
extern int random_r (struct random_data *__restrict __buf,
int32_t *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2)));
extern int srandom_r (unsigned int __seed, struct random_data *__buf)
throw () __attribute__ ((__nonnull__ (2)));
extern int initstate_r (unsigned int __seed, char *__restrict __statebuf,
size_t __statelen,
struct random_data *__restrict __buf)
throw () __attribute__ ((__nonnull__ (2, 4)));
extern int setstate_r (char *__restrict __statebuf,
struct random_data *__restrict __buf)
throw () __attribute__ ((__nonnull__ (1, 2)));
extern int rand (void) throw ();
extern void srand (unsigned int __seed) throw ();
extern int rand_r (unsigned int *__seed) throw ();
extern double drand48 (void) throw ();
extern double erand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1)));
extern long int lrand48 (void) throw ();
extern long int nrand48 (unsigned short int __xsubi[3])
throw () __attribute__ ((__nonnull__ (1)));
extern long int mrand48 (void) throw ();
extern long int jrand48 (unsigned short int __xsubi[3])
throw () __attribute__ ((__nonnull__ (1)));
extern void srand48 (long int __seedval) throw ();
extern unsigned short int *seed48 (unsigned short int __seed16v[3])
throw () __attribute__ ((__nonnull__ (1)));
extern void lcong48 (unsigned short int __param[7]) throw () __attribute__ ((__nonnull__ (1)));
struct drand48_data
{
unsigned short int __x[3];
unsigned short int __old_x[3];
unsigned short int __c;
unsigned short int __init;
unsigned long long int __a;
};
extern int drand48_r (struct drand48_data *__restrict __buffer,
double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2)));
extern int erand48_r (unsigned short int __xsubi[3],
struct drand48_data *__restrict __buffer,
double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2)));
extern int lrand48_r (struct drand48_data *__restrict __buffer,
long int *__restrict __result)
throw () __attribute__ ((__nonnull__ (1, 2)));
extern int nrand48_r (unsigned short int __xsubi[3],
struct drand48_data *__restrict __buffer,
long int *__restrict __result)
throw () __attribute__ ((__nonnull__ (1, 2)));
extern int mrand48_r (struct drand48_data *__restrict __buffer,
long int *__restrict __result)
throw () __attribute__ ((__nonnull__ (1, 2)));
extern int jrand48_r (unsigned short int __xsubi[3],
struct drand48_data *__restrict __buffer,
long int *__restrict __result)
throw () __attribute__ ((__nonnull__ (1, 2)));
extern int srand48_r (long int __seedval, struct drand48_data *__buffer)
throw () __attribute__ ((__nonnull__ (2)));
extern int seed48_r (unsigned short int __seed16v[3],
struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2)));
extern int lcong48_r (unsigned short int __param[7],
struct drand48_data *__buffer)
throw () __attribute__ ((__nonnull__ (1, 2)));
extern void *malloc (size_t __size) throw () __attribute__ ((__malloc__)) ;
extern void *calloc (size_t __nmemb, size_t __size)
throw () __attribute__ ((__malloc__)) ;
extern void *realloc (void *__ptr, size_t __size)
throw () __attribute__ ((__warn_unused_result__));
extern void free (void *__ptr) throw ();
extern void cfree (void *__ptr) throw ();
# 1 "/usr/include/alloca.h" 1 3 4
# 25 "/usr/include/alloca.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 26 "/usr/include/alloca.h" 2 3 4
extern "C" {
extern void *alloca (size_t __size) throw ();
}
# 498 "/usr/include/stdlib.h" 2 3 4
extern void *valloc (size_t __size) throw () __attribute__ ((__malloc__)) ;
extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size)
throw () __attribute__ ((__nonnull__ (1))) ;
extern void abort (void) throw () __attribute__ ((__noreturn__));
extern int atexit (void (*__func) (void)) throw () __attribute__ ((__nonnull__ (1)));
extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg)
throw () __attribute__ ((__nonnull__ (1)));
extern void exit (int __status) throw () __attribute__ ((__noreturn__));
extern void _Exit (int __status) throw () __attribute__ ((__noreturn__));
extern char *getenv (__const char *__name) throw () __attribute__ ((__nonnull__ (1))) ;
extern char *__secure_getenv (__const char *__name)
throw () __attribute__ ((__nonnull__ (1))) ;
extern int putenv (char *__string) throw () __attribute__ ((__nonnull__ (1)));
extern int setenv (__const char *__name, __const char *__value, int __replace)
throw () __attribute__ ((__nonnull__ (2)));
extern int unsetenv (__const char *__name) throw ();
extern int clearenv (void) throw ();
# 583 "/usr/include/stdlib.h" 3 4
extern char *mktemp (char *__template) throw () __attribute__ ((__nonnull__ (1))) ;
# 594 "/usr/include/stdlib.h" 3 4
extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ;
# 604 "/usr/include/stdlib.h" 3 4
extern int mkstemp64 (char *__template) __attribute__ ((__nonnull__ (1))) ;
# 614 "/usr/include/stdlib.h" 3 4
extern char *mkdtemp (char *__template) throw () __attribute__ ((__nonnull__ (1))) ;
# 625 "/usr/include/stdlib.h" 3 4
extern int mkostemp (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ;
# 635 "/usr/include/stdlib.h" 3 4
extern int mkostemp64 (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ;
extern int system (__const char *__command) ;
extern char *canonicalize_file_name (__const char *__name)
throw () __attribute__ ((__nonnull__ (1))) ;
# 662 "/usr/include/stdlib.h" 3 4
extern char *realpath (__const char *__restrict __name,
char *__restrict __resolved) throw () ;
typedef int (*__compar_fn_t) (__const void *, __const void *);
typedef __compar_fn_t comparison_fn_t;
extern void *bsearch (__const void *__key, __const void *__base,
size_t __nmemb, size_t __size, __compar_fn_t __compar)
__attribute__ ((__nonnull__ (1, 2, 5))) ;
extern void qsort (void *__base, size_t __nmemb, size_t __size,
__compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4)));
extern int abs (int __x) throw () __attribute__ ((__const__)) ;
extern long int labs (long int __x) throw () __attribute__ ((__const__)) ;
__extension__ extern long long int llabs (long long int __x)
throw () __attribute__ ((__const__)) ;
extern div_t div (int __numer, int __denom)
throw () __attribute__ ((__const__)) ;
extern ldiv_t ldiv (long int __numer, long int __denom)
throw () __attribute__ ((__const__)) ;
__extension__ extern lldiv_t lldiv (long long int __numer,
long long int __denom)
throw () __attribute__ ((__const__)) ;
# 727 "/usr/include/stdlib.h" 3 4
extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt,
int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ;
extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt,
int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ;
extern char *gcvt (double __value, int __ndigit, char *__buf)
throw () __attribute__ ((__nonnull__ (3))) ;
extern char *qecvt (long double __value, int __ndigit,
int *__restrict __decpt, int *__restrict __sign)
throw () __attribute__ ((__nonnull__ (3, 4))) ;
extern char *qfcvt (long double __value, int __ndigit,
int *__restrict __decpt, int *__restrict __sign)
throw () __attribute__ ((__nonnull__ (3, 4))) ;
extern char *qgcvt (long double __value, int __ndigit, char *__buf)
throw () __attribute__ ((__nonnull__ (3))) ;
extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt,
int *__restrict __sign, char *__restrict __buf,
size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5)));
extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt,
int *__restrict __sign, char *__restrict __buf,
size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5)));
extern int qecvt_r (long double __value, int __ndigit,
int *__restrict __decpt, int *__restrict __sign,
char *__restrict __buf, size_t __len)
throw () __attribute__ ((__nonnull__ (3, 4, 5)));
extern int qfcvt_r (long double __value, int __ndigit,
int *__restrict __decpt, int *__restrict __sign,
char *__restrict __buf, size_t __len)
throw () __attribute__ ((__nonnull__ (3, 4, 5)));
extern int mblen (__const char *__s, size_t __n) throw () ;
extern int mbtowc (wchar_t *__restrict __pwc,
__const char *__restrict __s, size_t __n) throw () ;
extern int wctomb (char *__s, wchar_t __wchar) throw () ;
extern size_t mbstowcs (wchar_t *__restrict __pwcs,
__const char *__restrict __s, size_t __n) throw ();
extern size_t wcstombs (char *__restrict __s,
__const wchar_t *__restrict __pwcs, size_t __n)
throw ();
extern int rpmatch (__const char *__response) throw () __attribute__ ((__nonnull__ (1))) ;
# 815 "/usr/include/stdlib.h" 3 4
extern int getsubopt (char **__restrict __optionp,
char *__const *__restrict __tokens,
char **__restrict __valuep)
throw () __attribute__ ((__nonnull__ (1, 2, 3))) ;
extern void setkey (__const char *__key) throw () __attribute__ ((__nonnull__ (1)));
extern int posix_openpt (int __oflag) ;
extern int grantpt (int __fd) throw ();
extern int unlockpt (int __fd) throw ();
extern char *ptsname (int __fd) throw () ;
extern int ptsname_r (int __fd, char *__buf, size_t __buflen)
throw () __attribute__ ((__nonnull__ (2)));
extern int getpt (void);
extern int getloadavg (double __loadavg[], int __nelem)
throw () __attribute__ ((__nonnull__ (1)));
# 883 "/usr/include/stdlib.h" 3 4
}
# 69 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../../include/c++/4.5.2/cstdlib" 2 3
# 100 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../../include/c++/4.5.2/cstdlib" 3
namespace std __attribute__ ((__visibility__ ("default"))) {
using ::div_t;
using ::ldiv_t;
using ::abort;
using ::abs;
using ::atexit;
using ::atof;
using ::atoi;
using ::atol;
using ::bsearch;
using ::calloc;
using ::div;
using ::exit;
using ::free;
using ::getenv;
using ::labs;
using ::ldiv;
using ::malloc;
using ::mblen;
using ::mbstowcs;
using ::mbtowc;
using ::qsort;
using ::rand;
using ::realloc;
using ::srand;
using ::strtod;
using ::strtol;
using ::strtoul;
using ::system;
using ::wcstombs;
using ::wctomb;
inline long
abs(long __i) { return labs(__i); }
inline ldiv_t
div(long __i, long __j) { return ldiv(__i, __j); }
}
# 157 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../../include/c++/4.5.2/cstdlib" 3
namespace __gnu_cxx __attribute__ ((__visibility__ ("default"))) {
using ::lldiv_t;
using ::_Exit;
inline long long
abs(long long __x) { return __x >= 0 ? __x : -__x; }
using ::llabs;
inline lldiv_t
div(long long __n, long long __d)
{ lldiv_t __q; __q.quot = __n / __d; __q.rem = __n % __d; return __q; }
using ::lldiv;
# 190 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../../include/c++/4.5.2/cstdlib" 3
using ::atoll;
using ::strtoll;
using ::strtoull;
using ::strtof;
using ::strtold;
}
namespace std __attribute__ ((__visibility__ ("default"))) {
using ::__gnu_cxx::lldiv_t;
using ::__gnu_cxx::_Exit;
using ::__gnu_cxx::abs;
using ::__gnu_cxx::llabs;
using ::__gnu_cxx::div;
using ::__gnu_cxx::lldiv;
using ::__gnu_cxx::atoll;
using ::__gnu_cxx::strtof;
using ::__gnu_cxx::strtoll;
using ::__gnu_cxx::strtoull;
using ::__gnu_cxx::strtold;
}
# 3 "/tmp/petsc-5zlcDX/config.setCompilers/conftest.cc" 2
Popping language Cxx
================================================================================
TEST checkFortranCompiler from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:860)
TESTING: checkFortranCompiler from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:860)
Locate a functional Fortran compiler
sh: mpif90 --help
Executing: mpif90 --help
sh: Usage: gfortran [options] file...
Options:
-pass-exit-codes Exit with highest error code from a phase
--help Display this information
--target-help Display target specific command line options
--help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...]
Display specific types of command line options
(Use '-v --help' to display command line options of sub-processes)
--version Display compiler version information
-dumpspecs Display all of the built in spec strings
-dumpversion Display the version of the compiler
-dumpmachine Display the compiler's target processor
-print-search-dirs Display the directories in the compiler's search path
-print-libgcc-file-name Display the name of the compiler's companion library
-print-file-name=<lib> Display the full path to library <lib>
-print-prog-name=<prog> Display the full path to compiler component <prog>
-print-multi-directory Display the root directory for versions of libgcc
-print-multi-lib Display the mapping between command line options and
multiple library search directories
-print-multi-os-directory Display the relative path to OS libraries
-print-sysroot Display the target libraries directory
-print-sysroot-headers-suffix Display the sysroot suffix used to find headers
-Wa,<options> Pass comma-separated <options> on to the assembler
-Wp,<options> Pass comma-separated <options> on to the preprocessor
-Wl,<options> Pass comma-separated <options> on to the linker
-Xassembler <arg> Pass <arg> on to the assembler
-Xpreprocessor <arg> Pass <arg> on to the preprocessor
-Xlinker <arg> Pass <arg> on to the linker
-combine Pass multiple source files to compiler at once
-save-temps Do not delete intermediate files
-save-temps=<arg> Do not delete intermediate files
-no-canonical-prefixes Do not canonicalize paths when building relative
prefixes to other gcc components
-pipe Use pipes rather than intermediate files
-time Time the execution of each subprocess
-specs=<file> Override built-in specs with the contents of <file>
-std=<standard> Assume that the input sources are for <standard>
--sysroot=<directory> Use <directory> as the root directory for headers
and libraries
-B <directory> Add <directory> to the compiler's search paths
-b <machine> Run gcc for target <machine>, if installed
-V <version> Run gcc version number <version>, if installed
-v Display the programs invoked by the compiler
-### Like -v but options quoted and commands not executed
-E Preprocess only; do not compile, assemble or link
-S Compile only; do not assemble or link
-c Compile and assemble, but do not link
-o <file> Place the output into <file>
-x <language> Specify the language of the following input files
Permissible languages include: c c++ assembler none
'none' means revert to the default behavior of
guessing the language based on the file's extension
Options starting with -g, -f, -m, -O, -W, or --param are automatically
passed on to the various sub-processes invoked by gfortran. In order to pass
other options on to these processes the -W<letter> options must be used.
For bug reporting instructions, please see:
<http://gcc.gnu.org/bugs.html>.
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/mpif90...found
Defined make macro "FC" to "mpif90"
Pushing language FC
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
sh:
Successful compile:
Source:
program main
end
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
sh:
Successful compile:
Source:
program main
end
Pushing language C
Popping language C
Pushing language CUDA
Popping language CUDA
Pushing language Cxx
Popping language Cxx
Pushing language FC
Popping language FC
Pushing language FC
Popping language FC
sh: mpif90 -o /tmp/petsc-5zlcDX/config.setCompilers/conftest /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
Executing: mpif90 -o /tmp/petsc-5zlcDX/config.setCompilers/conftest /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
sh:
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
sh:
Successful compile:
Source:
program main
end
Pushing language FC
Popping language FC
sh: mpif90 -o /tmp/petsc-5zlcDX/config.setCompilers/conftest /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
Executing: mpif90 -o /tmp/petsc-5zlcDX/config.setCompilers/conftest /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
sh:
Executing: /tmp/petsc-5zlcDX/config.setCompilers/conftest
sh: /tmp/petsc-5zlcDX/config.setCompilers/conftest
Executing: /tmp/petsc-5zlcDX/config.setCompilers/conftest
sh:
Popping language FC
================================================================================
TEST checkFortranComments from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:879)
TESTING: checkFortranComments from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:879)
Make sure fortran comment "!" works
Pushing language FC
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
sh:
Successful compile:
Source:
! comment
program main
end
Fortran comments can use ! in column 1
Popping language FC
================================================================================
TEST checkPIC from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:942)
TESTING: checkPIC from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:942)
Determine the PIC option for each compiler
- There needs to be a test that checks that the functionality is actually working
Pushing language C
Trying C compiler flag -PIC
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -PIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
Executing: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -PIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
sh:
Possible ERROR while running linker: gcc: unrecognized option '-PIC'
output: error message = {gcc: unrecognized option '-PIC'
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -PIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Rejecting C linker flag -PIC due to
gcc: unrecognized option '-PIC'
Rejected C compiler flag -PIC because linker cannot handle it
Trying C compiler flag -fPIC
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
Executing: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
sh:
Valid C linker flag -fPIC
Adding C compiler flag -fPIC
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Added C compiler flag -fPIC
Popping language C
Pushing language Cxx
Trying Cxx compiler flag -PIC
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -DMPICH_IGNORE_CXX_SEEK /tmp/petsc-5zlcDX/config.setCompilers/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -DMPICH_IGNORE_CXX_SEEK /tmp/petsc-5zlcDX/config.setCompilers/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Pushing language CXX
Popping language CXX
sh: mpicxx -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -PIC -DMPICH_IGNORE_CXX_SEEK /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
Executing: mpicxx -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -PIC -DMPICH_IGNORE_CXX_SEEK /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
sh:
Possible ERROR while running linker: g++: unrecognized option '-PIC'
output: error message = {g++: unrecognized option '-PIC'
}
Pushing language CXX
Popping language CXX
in mpicxx -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -PIC -DMPICH_IGNORE_CXX_SEEK /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Rejecting Cxx linker flag -PIC due to
g++: unrecognized option '-PIC'
Rejected Cxx compiler flag -PIC because linker cannot handle it
Trying Cxx compiler flag -fPIC
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -DMPICH_IGNORE_CXX_SEEK /tmp/petsc-5zlcDX/config.setCompilers/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -DMPICH_IGNORE_CXX_SEEK /tmp/petsc-5zlcDX/config.setCompilers/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Pushing language CXX
Popping language CXX
sh: mpicxx -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -fPIC -DMPICH_IGNORE_CXX_SEEK /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
Executing: mpicxx -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -fPIC -DMPICH_IGNORE_CXX_SEEK /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
sh:
Valid Cxx linker flag -fPIC
Adding Cxx compiler flag -fPIC
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -DMPICH_IGNORE_CXX_SEEK -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -DMPICH_IGNORE_CXX_SEEK -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Added Cxx compiler flag -fPIC
Popping language Cxx
Pushing language FC
Trying FC compiler flag -PIC
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
sh:
Successful compile:
Source:
program main
end
Pushing language FC
Popping language FC
sh: mpif90 -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -PIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
Executing: mpif90 -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -PIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
sh:
Possible ERROR while running linker: gfortran: unrecognized option '-PIC'
output: error message = {gfortran: unrecognized option '-PIC'
}
Pushing language FC
Popping language FC
in mpif90 -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -PIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
Source:
program main
end
Rejecting FC linker flag -PIC due to
gfortran: unrecognized option '-PIC'
Rejected FC compiler flag -PIC because linker cannot handle it
Trying FC compiler flag -fPIC
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
sh:
Successful compile:
Source:
program main
end
Pushing language FC
Popping language FC
sh: mpif90 -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
Executing: mpif90 -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
sh:
Valid FC linker flag -fPIC
Adding FC compiler flag -fPIC
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
sh:
Successful compile:
Source:
program main
end
Added FC compiler flag -fPIC
Popping language FC
================================================================================
TEST checkLargeFileIO from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:973)
TESTING: checkLargeFileIO from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:973)
================================================================================
TEST checkArchiver from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:1072)
TESTING: checkArchiver from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:1072)
Check that the archiver exists and can make a library usable by the compiler
Pushing language C
sh: ar -V
Executing: ar -V
sh: GNU ar (GNU Binutils for Ubuntu) 2.18.0.20080103
Copyright 2007 Free Software Foundation, Inc.
This program is free software; you may redistribute it under the terms of
the GNU General Public License version 3 or (at your option) any later version.
This program has absolutely no warranty.
sh: ar -V
Executing: ar -V
sh: GNU ar (GNU Binutils for Ubuntu) 2.18.0.20080103
Copyright 2007 Free Software Foundation, Inc.
This program is free software; you may redistribute it under the terms of
the GNU General Public License version 3 or (at your option) any later version.
This program has absolutely no warranty.
Defined make macro "FAST_AR_FLAGS" to "Scq"
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int foo(int a) {
return a+1;
}
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/ar...not found
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/ar...not found
Checking for program /home/buildbot/pylith_deps/bin/ar...not found
Checking for program /home/buildbot/buildbot/bin/ar...not found
Checking for program /usr/local/sbin/ar...not found
Checking for program /usr/local/bin/ar...not found
Checking for program /usr/sbin/ar...not found
Checking for program /usr/bin/ar...found
Defined make macro "AR" to "/usr/bin/ar"
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/ranlib...not found
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/ranlib...not found
Checking for program /home/buildbot/pylith_deps/bin/ranlib...not found
Checking for program /home/buildbot/buildbot/bin/ranlib...not found
Checking for program /usr/local/sbin/ranlib...not found
Checking for program /usr/local/bin/ranlib...not found
Checking for program /usr/sbin/ranlib...not found
Checking for program /usr/bin/ranlib...found
Defined make macro "RANLIB" to "/usr/bin/ranlib -c"
sh: /usr/bin/ar cr /tmp/petsc-5zlcDX/config.setCompilers/libconf1.a /tmp/petsc-5zlcDX/config.setCompilers/conf1.o
Executing: /usr/bin/ar cr /tmp/petsc-5zlcDX/config.setCompilers/libconf1.a /tmp/petsc-5zlcDX/config.setCompilers/conf1.o
sh:
sh: /usr/bin/ranlib -c /tmp/petsc-5zlcDX/config.setCompilers/libconf1.a
Executing: /usr/bin/ranlib -c /tmp/petsc-5zlcDX/config.setCompilers/libconf1.a
sh:
Possible ERROR while running ranlib:
ret = 256
error message = {/usr/bin/ranlib: '-c': No such file
}
Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary.
sh: ar -V
Executing: ar -V
sh: GNU ar (GNU Binutils for Ubuntu) 2.18.0.20080103
Copyright 2007 Free Software Foundation, Inc.
This program is free software; you may redistribute it under the terms of
the GNU General Public License version 3 or (at your option) any later version.
This program has absolutely no warranty.
sh: ar -V
Executing: ar -V
sh: GNU ar (GNU Binutils for Ubuntu) 2.18.0.20080103
Copyright 2007 Free Software Foundation, Inc.
This program is free software; you may redistribute it under the terms of
the GNU General Public License version 3 or (at your option) any later version.
This program has absolutely no warranty.
Defined make macro "FAST_AR_FLAGS" to "Scq"
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int foo(int a) {
return a+1;
}
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/ar...not found
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/ar...not found
Checking for program /home/buildbot/pylith_deps/bin/ar...not found
Checking for program /home/buildbot/buildbot/bin/ar...not found
Checking for program /usr/local/sbin/ar...not found
Checking for program /usr/local/bin/ar...not found
Checking for program /usr/sbin/ar...not found
Checking for program /usr/bin/ar...found
Defined make macro "AR" to "/usr/bin/ar"
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/ranlib...not found
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/ranlib...not found
Checking for program /home/buildbot/pylith_deps/bin/ranlib...not found
Checking for program /home/buildbot/buildbot/bin/ranlib...not found
Checking for program /usr/local/sbin/ranlib...not found
Checking for program /usr/local/bin/ranlib...not found
Checking for program /usr/sbin/ranlib...not found
Checking for program /usr/bin/ranlib...found
Defined make macro "RANLIB" to "/usr/bin/ranlib"
sh: /usr/bin/ar cr /tmp/petsc-5zlcDX/config.setCompilers/libconf1.a /tmp/petsc-5zlcDX/config.setCompilers/conf1.o
Executing: /usr/bin/ar cr /tmp/petsc-5zlcDX/config.setCompilers/libconf1.a /tmp/petsc-5zlcDX/config.setCompilers/conf1.o
sh:
sh: /usr/bin/ranlib /tmp/petsc-5zlcDX/config.setCompilers/libconf1.a
Executing: /usr/bin/ranlib /tmp/petsc-5zlcDX/config.setCompilers/libconf1.a
sh:
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
extern int foo(int);
int main() {
int b = foo(1); if (b);
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -L/tmp/petsc-5zlcDX/config.setCompilers -lconf1
Executing: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -L/tmp/petsc-5zlcDX/config.setCompilers -lconf1
sh:
Defined make macro "AR_FLAGS" to "cr"
Defined make macro "AR_LIB_SUFFIX" to "a"
Popping language C
================================================================================
TEST checkSharedLinker from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:1185)
TESTING: checkSharedLinker from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:1185)
Check that the linker can produce shared libraries
sh: uname -s
Executing: uname -s
sh: Linux
Checking shared linker mpicxx using flags ['-shared']
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/mpicxx...found
Defined make macro "LD_SHARED" to "mpicxx"
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -shared -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
Executing: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -shared -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
sh:
Valid C linker flag -shared
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdio.h>
int foo(void) {printf("hello");
return 0;}
Pushing language C
Popping language C
Pushing language CUDA
Popping language CUDA
Pushing language Cxx
Popping language Cxx
Pushing language FC
Popping language FC
Pushing language C
Popping language C
sh: mpicxx -o /tmp/petsc-5zlcDX/config.setCompilers/libconftest.so -shared /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
Executing: mpicxx -o /tmp/petsc-5zlcDX/config.setCompilers/libconftest.so -shared /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
sh:
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int foo(void);
int main() {
int ret = foo();
if(ret);;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -L/tmp/petsc-5zlcDX/config.setCompilers -lconftest
Executing: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -L/tmp/petsc-5zlcDX/config.setCompilers -lconftest
sh:
Using shared linker mpicxx with flags ['-shared'] and library extension so
sh: uname -s
Executing: uname -s
sh: Linux
================================================================================
TEST checkSharedLinkerPaths from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:1263)
TESTING: checkSharedLinkerPaths from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:1263)
Determine the shared linker path options
- IRIX: -rpath
- Linux, OSF: -Wl,-rpath,
- Solaris: -R
- FreeBSD: -Wl,-R,
Pushing language C
sh: uname -s
Executing: uname -s
sh: Linux
sh: mpicc -flags
Executing: mpicc -flags
sh:
Trying C linker flag -Wl,-rpath,
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -Wl,-rpath,/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
Executing: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -Wl,-rpath,/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
sh:
Valid C linker flag -Wl,-rpath,/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries
Popping language C
Pushing language Cxx
sh: uname -s
Executing: uname -s
sh: Linux
sh: mpicc -flags
Executing: mpicc -flags
sh:
Trying Cxx linker flag -Wl,-rpath,
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -DMPICH_IGNORE_CXX_SEEK -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -DMPICH_IGNORE_CXX_SEEK -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Pushing language CXX
Popping language CXX
sh: mpicxx -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -Wl,-rpath,/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries -DMPICH_IGNORE_CXX_SEEK /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
Executing: mpicxx -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -Wl,-rpath,/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries -DMPICH_IGNORE_CXX_SEEK /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
sh:
Valid Cxx linker flag -Wl,-rpath,/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries
Popping language Cxx
Pushing language FC
sh: uname -s
Executing: uname -s
sh: Linux
sh: mpicc -flags
Executing: mpicc -flags
sh:
Trying FC linker flag -Wl,-rpath,
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
sh:
Successful compile:
Source:
program main
end
Pushing language FC
Popping language FC
sh: mpif90 -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -Wl,-rpath,/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
Executing: mpif90 -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -Wl,-rpath,/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
sh:
Valid FC linker flag -Wl,-rpath,/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries
Popping language FC
================================================================================
TEST checkLibC from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:1298)
TESTING: checkLibC from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:1298)
Test whether we need to explicitly include libc in shared linking
- Mac OSX requires an explicit reference to libc for shared linking
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdlib.h>
int foo(void) {void *chunk = malloc(31); free(chunk); return 0;}
Pushing language C
Popping language C
sh: mpicxx -o /tmp/petsc-5zlcDX/config.setCompilers/libconftest.so -shared /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
Executing: mpicxx -o /tmp/petsc-5zlcDX/config.setCompilers/libconftest.so -shared /tmp/petsc-5zlcDX/config.setCompilers/conftest.o
sh:
Shared linking does not require an explicit libc reference
================================================================================
TEST checkDynamicLinker from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:1347)
TESTING: checkDynamicLinker from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:1347)
Check that the linker can dynamicaly load shared libraries
Checking for header: dlfcn.h
All intermediate test results are stored in /tmp/petsc-5zlcDX/config.headers
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/dlfcn.h" 1 3 4
# 24 "/usr/include/dlfcn.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 25 "/usr/include/dlfcn.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 27 "/usr/include/dlfcn.h" 2 3 4
# 1 "/usr/include/bits/dlfcn.h" 1 3 4
# 30 "/usr/include/dlfcn.h" 2 3 4
# 54 "/usr/include/dlfcn.h" 3 4
extern void *dlopen (__const char *__file, int __mode) __attribute__ ((__nothrow__));
extern int dlclose (void *__handle) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern void *dlsym (void *__restrict __handle,
__const char *__restrict __name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2)));
# 84 "/usr/include/dlfcn.h" 3 4
extern char *dlerror (void) __attribute__ ((__nothrow__));
# 190 "/usr/include/dlfcn.h" 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_DLFCN_H" to "1"
Checking for function dlopen in library ['dl'] []
Pushing language C
All intermediate test results are stored in /tmp/petsc-5zlcDX/config.libraries
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char dlopen();
int main() {
dlopen()
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.o -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.o -ldl
sh:
Defined "HAVE_LIBDL" to "1"
Popping language C
Checking for function dlsym in library ['dl'] []
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.libraries -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.libraries -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char dlsym();
int main() {
dlsym()
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.o -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.o -ldl
sh:
Defined "HAVE_LIBDL" to "1"
Popping language C
Checking for function dlclose in library ['dl'] []
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.libraries -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.libraries -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char dlclose();
int main() {
dlclose()
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.o -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.o -ldl
sh:
Defined "HAVE_LIBDL" to "1"
Popping language C
Adding ['dl'] to LIBS
sh: uname -s
Executing: uname -s
sh: Linux
Checking dynamic linker mpicxx using flags ['-shared']
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/mpicxx...found
Defined make macro "DYNAMICLINKER" to "mpicxx"
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -shared -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -shared -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -ldl
sh:
Valid C linker flag -shared
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdio.h>
int foo(void) {printf("test");return 0;}
Pushing language C
Popping language C
Pushing language CUDA
Popping language CUDA
Pushing language Cxx
Popping language Cxx
Pushing language FC
Popping language FC
Pushing language C
Popping language C
sh: mpicxx -o /tmp/petsc-5zlcDX/config.setCompilers/libconftest.so -shared /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -ldl
Executing: mpicxx -o /tmp/petsc-5zlcDX/config.setCompilers/libconftest.so -shared /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -ldl
sh:
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.setCompilers/conftest.c: In function ‘main’:
/tmp/petsc-5zlcDX/config.setCompilers/conftest.c:11:3: warning: incompatible implicit declaration of built-in function ‘printf’
/tmp/petsc-5zlcDX/config.setCompilers/conftest.c:15:3: warning: incompatible implicit declaration of built-in function ‘printf’
/tmp/petsc-5zlcDX/config.setCompilers/conftest.c:19:3: warning: incompatible implicit declaration of built-in function ‘printf’
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include<dlfcn.h>
int main() {
void *handle = dlopen("/tmp/petsc-5zlcDX/config.setCompilers/libconftest.so", 0);
int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo");
if (!foo) {
printf("Could not load symbol\n");
return -1;
}
if ((*foo)()) {
printf("Invalid return from foo()\n");
return -1;
}
if (dlclose(handle)) {
printf("Could not close library\n");
return -1;
}
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -ldl
sh:
Using dynamic linker mpicxx with flags ['-shared'] and library extension so
================================================================================
TEST output from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:1393)
TESTING: output from config.setCompilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/setCompilers.py:1393)
Output module data as defines and substitutions
Substituting "CC" with "mpicc"
Substituting "CFLAGS" with " -fPIC"
Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath,"
Substituting "CPP" with "mpicc -E"
Substituting "CPPFLAGS" with ""
Substituting "CXX" with "mpicxx"
Substituting "CXX_CXXFLAGS" with " -fPIC"
Substituting "CXXFLAGS" with "-DMPICH_IGNORE_CXX_SEEK"
Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath,"
Substituting "CXXCPP" with "mpicxx -E"
Substituting "CXXCPPFLAGS" with ""
Substituting "FC" with "mpif90"
Substituting "FFLAGS" with " -fPIC"
Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath,"
Substituting "LDFLAGS" with ""
Substituting "LIBS" with "-ldl "
Substituting "SHARED_LIBRARY_FLAG" with "-shared"
================================================================================
TEST configureCompilerFlags from config.compilerFlags(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilerFlags.py:65)
TESTING: configureCompilerFlags from config.compilerFlags(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilerFlags.py:65)
Get the default compiler flags
Pushing language C
sh: mpicc --version
Executing: mpicc --version
sh: gcc (GCC) 4.5.2
Copyright (C) 2010 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
getCompilerVersion: mpicc gcc (GCC) 4.5.2
sh: mpicc -show
Executing: mpicc -show
sh: gcc -I/home/buildbot/install/pylith_linux_i686_binbot/include -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread
sh: gcc --help
Executing: gcc --help
sh: Usage: gcc [options] file...
Options:
-pass-exit-codes Exit with highest error code from a phase
--help Display this information
--target-help Display target specific command line options
--help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...]
Display specific types of command line options
(Use '-v --help' to display command line options of sub-processes)
--version Display compiler version information
-dumpspecs Display all of the built in spec strings
-dumpversion Display the version of the compiler
-dumpmachine Display the compiler's target processor
-print-search-dirs Display the directories in the compiler's search path
-print-libgcc-file-name Display the name of the compiler's companion library
-print-file-name=<lib> Display the full path to library <lib>
-print-prog-name=<prog> Display the full path to compiler component <prog>
-print-multi-directory Display the root directory for versions of libgcc
-print-multi-lib Display the mapping between command line options and
multiple library search directories
-print-multi-os-directory Display the relative path to OS libraries
-print-sysroot Display the target libraries directory
-print-sysroot-headers-suffix Display the sysroot suffix used to find headers
-Wa,<options> Pass comma-separated <options> on to the assembler
-Wp,<options> Pass comma-separated <options> on to the preprocessor
-Wl,<options> Pass comma-separated <options> on to the linker
-Xassembler <arg> Pass <arg> on to the assembler
-Xpreprocessor <arg> Pass <arg> on to the preprocessor
-Xlinker <arg> Pass <arg> on to the linker
-combine Pass multiple source files to compiler at once
-save-temps Do not delete intermediate files
-save-temps=<arg> Do not delete intermediate files
-no-canonical-prefixes Do not canonicalize paths when building relative
prefixes to other gcc components
-pipe Use pipes rather than intermediate files
-time Time the execution of each subprocess
-specs=<file> Override built-in specs with the contents of <file>
-std=<standard> Assume that the input sources are for <standard>
--sysroot=<directory> Use <directory> as the root directory for headers
and libraries
-B <directory> Add <directory> to the compiler's search paths
-b <machine> Run gcc for target <machine>, if installed
-V <version> Run gcc version number <version>, if installed
-v Display the programs invoked by the compiler
-### Like -v but options quoted and commands not executed
-E Preprocess only; do not compile, assemble or link
-S Compile only; do not assemble or link
-c Compile and assemble, but do not link
-o <file> Place the output into <file>
-x <language> Specify the language of the following input files
Permissible languages include: c c++ assembler none
'none' means revert to the default behavior of
guessing the language based on the file's extension
Options starting with -g, -f, -m, -O, -W, or --param are automatically
passed on to the various sub-processes invoked by gcc. In order to pass
other options on to these processes the -W<letter> options must be used.
For bug reporting instructions, please see:
<http://gcc.gnu.org/bugs.html>.
Trying C compiler flag -Wall
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Added C compiler flag -Wall
Trying C compiler flag -Wwrite-strings
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall -Wwrite-strings /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall -Wwrite-strings /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Added C compiler flag -Wwrite-strings
Trying C compiler flag -Wno-strict-aliasing
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Added C compiler flag -Wno-strict-aliasing
Trying C compiler flag -Wno-unknown-pragmas
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Added C compiler flag -Wno-unknown-pragmas
sh: mpicc -show
Executing: mpicc -show
sh: gcc -I/home/buildbot/install/pylith_linux_i686_binbot/include -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread
sh: gcc --help
Executing: gcc --help
sh: Usage: gcc [options] file...
Options:
-pass-exit-codes Exit with highest error code from a phase
--help Display this information
--target-help Display target specific command line options
--help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...]
Display specific types of command line options
(Use '-v --help' to display command line options of sub-processes)
--version Display compiler version information
-dumpspecs Display all of the built in spec strings
-dumpversion Display the version of the compiler
-dumpmachine Display the compiler's target processor
-print-search-dirs Display the directories in the compiler's search path
-print-libgcc-file-name Display the name of the compiler's companion library
-print-file-name=<lib> Display the full path to library <lib>
-print-prog-name=<prog> Display the full path to compiler component <prog>
-print-multi-directory Display the root directory for versions of libgcc
-print-multi-lib Display the mapping between command line options and
multiple library search directories
-print-multi-os-directory Display the relative path to OS libraries
-print-sysroot Display the target libraries directory
-print-sysroot-headers-suffix Display the sysroot suffix used to find headers
-Wa,<options> Pass comma-separated <options> on to the assembler
-Wp,<options> Pass comma-separated <options> on to the preprocessor
-Wl,<options> Pass comma-separated <options> on to the linker
-Xassembler <arg> Pass <arg> on to the assembler
-Xpreprocessor <arg> Pass <arg> on to the preprocessor
-Xlinker <arg> Pass <arg> on to the linker
-combine Pass multiple source files to compiler at once
-save-temps Do not delete intermediate files
-save-temps=<arg> Do not delete intermediate files
-no-canonical-prefixes Do not canonicalize paths when building relative
prefixes to other gcc components
-pipe Use pipes rather than intermediate files
-time Time the execution of each subprocess
-specs=<file> Override built-in specs with the contents of <file>
-std=<standard> Assume that the input sources are for <standard>
--sysroot=<directory> Use <directory> as the root directory for headers
and libraries
-B <directory> Add <directory> to the compiler's search paths
-b <machine> Run gcc for target <machine>, if installed
-V <version> Run gcc version number <version>, if installed
-v Display the programs invoked by the compiler
-### Like -v but options quoted and commands not executed
-E Preprocess only; do not compile, assemble or link
-S Compile only; do not assemble or link
-c Compile and assemble, but do not link
-o <file> Place the output into <file>
-x <language> Specify the language of the following input files
Permissible languages include: c c++ assembler none
'none' means revert to the default behavior of
guessing the language based on the file's extension
Options starting with -g, -f, -m, -O, -W, or --param are automatically
passed on to the various sub-processes invoked by gcc. In order to pass
other options on to these processes the -W<letter> options must be used.
For bug reporting instructions, please see:
<http://gcc.gnu.org/bugs.html>.
Trying C compiler flag -O
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Added C compiler flag -O
Popping language C
Pushing language Cxx
sh: mpicxx --version
Executing: mpicxx --version
sh: g++ (GCC) 4.5.2
Copyright (C) 2010 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
getCompilerVersion: mpicxx g++ (GCC) 4.5.2
Ignoring default options which were overridden using --CXXFLAGS -DMPICH_IGNORE_CXX_SEEK
sh: mpicxx -show
Executing: mpicxx -show
sh: g++ -I/home/buildbot/install/pylith_linux_i686_binbot/include -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath -Wl,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpichcxx -lmpich -lopa -lmpl -lrt -lpthread
sh: g++ --help
Executing: g++ --help
sh: Usage: g++ [options] file...
Options:
-pass-exit-codes Exit with highest error code from a phase
--help Display this information
--target-help Display target specific command line options
--help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...]
Display specific types of command line options
(Use '-v --help' to display command line options of sub-processes)
--version Display compiler version information
-dumpspecs Display all of the built in spec strings
-dumpversion Display the version of the compiler
-dumpmachine Display the compiler's target processor
-print-search-dirs Display the directories in the compiler's search path
-print-libgcc-file-name Display the name of the compiler's companion library
-print-file-name=<lib> Display the full path to library <lib>
-print-prog-name=<prog> Display the full path to compiler component <prog>
-print-multi-directory Display the root directory for versions of libgcc
-print-multi-lib Display the mapping between command line options and
multiple library search directories
-print-multi-os-directory Display the relative path to OS libraries
-print-sysroot Display the target libraries directory
-print-sysroot-headers-suffix Display the sysroot suffix used to find headers
-Wa,<options> Pass comma-separated <options> on to the assembler
-Wp,<options> Pass comma-separated <options> on to the preprocessor
-Wl,<options> Pass comma-separated <options> on to the linker
-Xassembler <arg> Pass <arg> on to the assembler
-Xpreprocessor <arg> Pass <arg> on to the preprocessor
-Xlinker <arg> Pass <arg> on to the linker
-combine Pass multiple source files to compiler at once
-save-temps Do not delete intermediate files
-save-temps=<arg> Do not delete intermediate files
-no-canonical-prefixes Do not canonicalize paths when building relative
prefixes to other gcc components
-pipe Use pipes rather than intermediate files
-time Time the execution of each subprocess
-specs=<file> Override built-in specs with the contents of <file>
-std=<standard> Assume that the input sources are for <standard>
--sysroot=<directory> Use <directory> as the root directory for headers
and libraries
-B <directory> Add <directory> to the compiler's search paths
-b <machine> Run gcc for target <machine>, if installed
-V <version> Run gcc version number <version>, if installed
-v Display the programs invoked by the compiler
-### Like -v but options quoted and commands not executed
-E Preprocess only; do not compile, assemble or link
-S Compile only; do not assemble or link
-c Compile and assemble, but do not link
-o <file> Place the output into <file>
-x <language> Specify the language of the following input files
Permissible languages include: c c++ assembler none
'none' means revert to the default behavior of
guessing the language based on the file's extension
Options starting with -g, -f, -m, -O, -W, or --param are automatically
passed on to the various sub-processes invoked by g++. In order to pass
other options on to these processes the -W<letter> options must be used.
For bug reporting instructions, please see:
<http://gcc.gnu.org/bugs.html>.
Trying Cxx compiler flag -O
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Added Cxx compiler flag -O
Popping language Cxx
Pushing language FC
sh: mpif90 --version
Executing: mpif90 --version
sh: GNU Fortran (GCC) 4.5.2
Copyright (C) 2010 Free Software Foundation, Inc.
GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING
getCompilerVersion: mpif90 GNU Fortran (GCC) 4.5.2
sh: mpif90 -show
Executing: mpif90 -show
sh: gfortran -I/home/buildbot/install/pylith_linux_i686_binbot/include -I/home/buildbot/install/pylith_linux_i686_binbot/include -L/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpichf90 -Wl,-rpath -Wl,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpichf90 -lmpich -lopa -lmpl -lrt -lpthread
sh: gfortran --help
Executing: gfortran --help
sh: Usage: gfortran [options] file...
Options:
-pass-exit-codes Exit with highest error code from a phase
--help Display this information
--target-help Display target specific command line options
--help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...]
Display specific types of command line options
(Use '-v --help' to display command line options of sub-processes)
--version Display compiler version information
-dumpspecs Display all of the built in spec strings
-dumpversion Display the version of the compiler
-dumpmachine Display the compiler's target processor
-print-search-dirs Display the directories in the compiler's search path
-print-libgcc-file-name Display the name of the compiler's companion library
-print-file-name=<lib> Display the full path to library <lib>
-print-prog-name=<prog> Display the full path to compiler component <prog>
-print-multi-directory Display the root directory for versions of libgcc
-print-multi-lib Display the mapping between command line options and
multiple library search directories
-print-multi-os-directory Display the relative path to OS libraries
-print-sysroot Display the target libraries directory
-print-sysroot-headers-suffix Display the sysroot suffix used to find headers
-Wa,<options> Pass comma-separated <options> on to the assembler
-Wp,<options> Pass comma-separated <options> on to the preprocessor
-Wl,<options> Pass comma-separated <options> on to the linker
-Xassembler <arg> Pass <arg> on to the assembler
-Xpreprocessor <arg> Pass <arg> on to the preprocessor
-Xlinker <arg> Pass <arg> on to the linker
-combine Pass multiple source files to compiler at once
-save-temps Do not delete intermediate files
-save-temps=<arg> Do not delete intermediate files
-no-canonical-prefixes Do not canonicalize paths when building relative
prefixes to other gcc components
-pipe Use pipes rather than intermediate files
-time Time the execution of each subprocess
-specs=<file> Override built-in specs with the contents of <file>
-std=<standard> Assume that the input sources are for <standard>
--sysroot=<directory> Use <directory> as the root directory for headers
and libraries
-B <directory> Add <directory> to the compiler's search paths
-b <machine> Run gcc for target <machine>, if installed
-V <version> Run gcc version number <version>, if installed
-v Display the programs invoked by the compiler
-### Like -v but options quoted and commands not executed
-E Preprocess only; do not compile, assemble or link
-S Compile only; do not assemble or link
-c Compile and assemble, but do not link
-o <file> Place the output into <file>
-x <language> Specify the language of the following input files
Permissible languages include: c c++ assembler none
'none' means revert to the default behavior of
guessing the language based on the file's extension
Options starting with -g, -f, -m, -O, -W, or --param are automatically
passed on to the various sub-processes invoked by gfortran. In order to pass
other options on to these processes the -W<letter> options must be used.
For bug reporting instructions, please see:
<http://gcc.gnu.org/bugs.html>.
sh: gfortran --version
Executing: gfortran --version
sh: GNU Fortran (GCC) 4.5.2
Copyright (C) 2010 Free Software Foundation, Inc.
GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING
sh: gfortran --version
Executing: gfortran --version
sh: GNU Fortran (GCC) 4.5.2
Copyright (C) 2010 Free Software Foundation, Inc.
GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING
Trying FC compiler flag -Wall
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
sh:
Successful compile:
Source:
program main
end
Added FC compiler flag -Wall
Trying FC compiler flag -Wno-unused-variable
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall -Wno-unused-variable /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall -Wno-unused-variable /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
sh:
Successful compile:
Source:
program main
end
Added FC compiler flag -Wno-unused-variable
Trying FC compiler flag -Wno-line-truncation
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
sh:
Successful compile:
Source:
program main
end
Added FC compiler flag -Wno-line-truncation
sh: mpif90 -show
Executing: mpif90 -show
sh: gfortran -I/home/buildbot/install/pylith_linux_i686_binbot/include -I/home/buildbot/install/pylith_linux_i686_binbot/include -L/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpichf90 -Wl,-rpath -Wl,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpichf90 -lmpich -lopa -lmpl -lrt -lpthread
sh: gfortran --help
Executing: gfortran --help
sh: Usage: gfortran [options] file...
Options:
-pass-exit-codes Exit with highest error code from a phase
--help Display this information
--target-help Display target specific command line options
--help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...]
Display specific types of command line options
(Use '-v --help' to display command line options of sub-processes)
--version Display compiler version information
-dumpspecs Display all of the built in spec strings
-dumpversion Display the version of the compiler
-dumpmachine Display the compiler's target processor
-print-search-dirs Display the directories in the compiler's search path
-print-libgcc-file-name Display the name of the compiler's companion library
-print-file-name=<lib> Display the full path to library <lib>
-print-prog-name=<prog> Display the full path to compiler component <prog>
-print-multi-directory Display the root directory for versions of libgcc
-print-multi-lib Display the mapping between command line options and
multiple library search directories
-print-multi-os-directory Display the relative path to OS libraries
-print-sysroot Display the target libraries directory
-print-sysroot-headers-suffix Display the sysroot suffix used to find headers
-Wa,<options> Pass comma-separated <options> on to the assembler
-Wp,<options> Pass comma-separated <options> on to the preprocessor
-Wl,<options> Pass comma-separated <options> on to the linker
-Xassembler <arg> Pass <arg> on to the assembler
-Xpreprocessor <arg> Pass <arg> on to the preprocessor
-Xlinker <arg> Pass <arg> on to the linker
-combine Pass multiple source files to compiler at once
-save-temps Do not delete intermediate files
-save-temps=<arg> Do not delete intermediate files
-no-canonical-prefixes Do not canonicalize paths when building relative
prefixes to other gcc components
-pipe Use pipes rather than intermediate files
-time Time the execution of each subprocess
-specs=<file> Override built-in specs with the contents of <file>
-std=<standard> Assume that the input sources are for <standard>
--sysroot=<directory> Use <directory> as the root directory for headers
and libraries
-B <directory> Add <directory> to the compiler's search paths
-b <machine> Run gcc for target <machine>, if installed
-V <version> Run gcc version number <version>, if installed
-v Display the programs invoked by the compiler
-### Like -v but options quoted and commands not executed
-E Preprocess only; do not compile, assemble or link
-S Compile only; do not assemble or link
-c Compile and assemble, but do not link
-o <file> Place the output into <file>
-x <language> Specify the language of the following input files
Permissible languages include: c c++ assembler none
'none' means revert to the default behavior of
guessing the language based on the file's extension
Options starting with -g, -f, -m, -O, -W, or --param are automatically
passed on to the various sub-processes invoked by gfortran. In order to pass
other options on to these processes the -W<letter> options must be used.
For bug reporting instructions, please see:
<http://gcc.gnu.org/bugs.html>.
Trying FC compiler flag -O
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
sh:
Successful compile:
Source:
program main
end
Added FC compiler flag -O
Popping language FC
================================================================================
TEST configureDebugging from PETSc.utilities.debugging(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/debugging.py:25)
TESTING: configureDebugging from PETSc.utilities.debugging(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/debugging.py:25)
Defined "USE_ERRORCHECKING" to "1"
===============================================================================
WARNING! Compiling PETSc with no debugging, this should
only be done for timing and production runs. All development should
be done when configured using --with-debugging=1
===============================================================================
================================================================================
TEST configureArchitecture from PETSc.utilities.arch(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/arch.py:32)
TESTING: configureArchitecture from PETSc.utilities.arch(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/arch.py:32)
Checks PETSC_ARCH and sets if not set
Defined "ARCH" to ""pylith-linux-gnu-cxx-opt""
================================================================================
TEST checkSharedDynamicPicOptions from PETSc.utilities.sharedLibraries(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/sharedLibraries.py:42)
TESTING: checkSharedDynamicPicOptions from PETSc.utilities.sharedLibraries(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/sharedLibraries.py:42)
================================================================================
TEST configureSharedLibraries from PETSc.utilities.sharedLibraries(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/sharedLibraries.py:63)
TESTING: configureSharedLibraries from PETSc.utilities.sharedLibraries(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/sharedLibraries.py:63)
Checks whether shared libraries should be used, for which you must
- Specify --with-shared-libraries
- Have found a working shared linker
Defines PETSC_USE_SHARED_LIBRARIES if they are used
Defined make rule "shared_arch" with dependencies "shared_linux" and code []
Defined make macro "BUILDSHAREDLIB" to "yes"
Defined "HAVE_SHARED_LIBRARIES" to "1"
Defined "USE_SHARED_LIBRARIES" to "1"
================================================================================
TEST configureDynamicLibraries from PETSc.utilities.sharedLibraries(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/sharedLibraries.py:102)
TESTING: configureDynamicLibraries from PETSc.utilities.sharedLibraries(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/sharedLibraries.py:102)
Checks whether dynamic loading should be used, for which you must
- Specify --with-dynamic-loading
- Have found a working dynamic linker (with dlfcn.h and libdl)
Defines PETSC_USE_DYNAMIC_LIBRARIES if they are used
Defined "HAVE_DYNAMIC_LIBRARIES" to "1"
Dynamic loading - disabled
================================================================================
TEST configureBmakeDir from PETSc.utilities.bmakeDir(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/bmakeDir.py:26)
TESTING: configureBmakeDir from PETSc.utilities.bmakeDir(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/bmakeDir.py:26)
Makes $PETSC_ARCH and subdirectories if it does not exist
Changed persistence directory to pylith-linux-gnu-cxx-opt/conf
sh: mpicc --help
Executing: mpicc --help
sh: Usage: gcc [options] file...
Options:
-pass-exit-codes Exit with highest error code from a phase
--help Display this information
--target-help Display target specific command line options
--help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...]
Display specific types of command line options
(Use '-v --help' to display command line options of sub-processes)
--version Display compiler version information
-dumpspecs Display all of the built in spec strings
-dumpversion Display the version of the compiler
-dumpmachine Display the compiler's target processor
-print-search-dirs Display the directories in the compiler's search path
-print-libgcc-file-name Display the name of the compiler's companion library
-print-file-name=<lib> Display the full path to library <lib>
-print-prog-name=<prog> Display the full path to compiler component <prog>
-print-multi-directory Display the root directory for versions of libgcc
-print-multi-lib Display the mapping between command line options and
multiple library search directories
-print-multi-os-directory Display the relative path to OS libraries
-print-sysroot Display the target libraries directory
-print-sysroot-headers-suffix Display the sysroot suffix used to find headers
-Wa,<options> Pass comma-separated <options> on to the assembler
-Wp,<options> Pass comma-separated <options> on to the preprocessor
-Wl,<options> Pass comma-separated <options> on to the linker
-Xassembler <arg> Pass <arg> on to the assembler
-Xpreprocessor <arg> Pass <arg> on to the preprocessor
-Xlinker <arg> Pass <arg> on to the linker
-combine Pass multiple source files to compiler at once
-save-temps Do not delete intermediate files
-save-temps=<arg> Do not delete intermediate files
-no-canonical-prefixes Do not canonicalize paths when building relative
prefixes to other gcc components
-pipe Use pipes rather than intermediate files
-time Time the execution of each subprocess
-specs=<file> Override built-in specs with the contents of <file>
-std=<standard> Assume that the input sources are for <standard>
--sysroot=<directory> Use <directory> as the root directory for headers
and libraries
-B <directory> Add <directory> to the compiler's search paths
-b <machine> Run gcc for target <machine>, if installed
-V <version> Run gcc version number <version>, if installed
-v Display the programs invoked by the compiler
-### Like -v but options quoted and commands not executed
-E Preprocess only; do not compile, assemble or link
-S Compile only; do not assemble or link
-c Compile and assemble, but do not link
-o <file> Place the output into <file>
-x <language> Specify the language of the following input files
Permissible languages include: c c++ assembler none
'none' means revert to the default behavior of
guessing the language based on the file's extension
Options starting with -g, -f, -m, -O, -W, or --param are automatically
passed on to the various sub-processes invoked by gcc. In order to pass
other options on to these processes the -W<letter> options must be used.
For bug reporting instructions, please see:
<http://gcc.gnu.org/bugs.html>.
================================================================================
TEST checkRestrict from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:134)
TESTING: checkRestrict from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:134)
Check for the C/CXX restrict keyword
Pushing language C
All intermediate test results are stored in /tmp/petsc-5zlcDX/config.compilers
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.c
sh:
Possible ERROR while running compiler: ret = 256
error message = {/tmp/petsc-5zlcDX/config.compilers/conftest.c: In function ‘main’:
/tmp/petsc-5zlcDX/config.compilers/conftest.c:5:18: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘x’
/tmp/petsc-5zlcDX/config.compilers/conftest.c:5:18: error: ‘x’ undeclared (first use in this function)
/tmp/petsc-5zlcDX/config.compilers/conftest.c:5:18: note: each undeclared identifier is reported only once for each function it appears in
}
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
float * restrict x;;
return 0;
}
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.compilers/conftest.c: In function ‘main’:
/tmp/petsc-5zlcDX/config.compilers/conftest.c:5:23: warning: unused variable ‘x’
}
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
float * __restrict__ x;;
return 0;
}
compilers: Set C restrict keyword to __restrict__
Defined "C_RESTRICT" to " __restrict__"
Popping language C
================================================================================
TEST checkCFormatting from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:305)
TESTING: checkCFormatting from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:305)
Activate format string checking if using the GNU compilers
================================================================================
TEST checkCStaticInline from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:105)
TESTING: checkCStaticInline from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:105)
Check for C keyword: static inline
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.compilers/conftest.c: In function ‘main’:
/tmp/petsc-5zlcDX/config.compilers/conftest.c:6:5: warning: unused variable ‘i’
}
Source:
#include "confdefs.h"
#include "conffix.h"
static inline int foo(int a) {return a;}
int main() {
int i = foo(1);;
return 0;
}
compilers: Set C StaticInline keyword to static inline
Popping language C
Defined "C_STATIC_INLINE" to "static inline"
================================================================================
TEST checkDynamicLoadFlag from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:316)
TESTING: checkDynamicLoadFlag from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:316)
Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <dlfcn.h>
char *libname;
int main() {
dlopen(libname, RTLD_LAZY);
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.o -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.o -ldl
sh:
Defined "HAVE_RTLD_LAZY" to "1"
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <dlfcn.h>
char *libname;
int main() {
dlopen(libname, RTLD_NOW);
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.o -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.o -ldl
sh:
Defined "HAVE_RTLD_NOW" to "1"
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <dlfcn.h>
char *libname;
int main() {
dlopen(libname, RTLD_LOCAL);
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.o -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.o -ldl
sh:
Defined "HAVE_RTLD_LOCAL" to "1"
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <dlfcn.h>
char *libname;
int main() {
dlopen(libname, RTLD_GLOBAL);
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.o -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.o -ldl
sh:
Defined "HAVE_RTLD_GLOBAL" to "1"
================================================================================
TEST checkCLibraries from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:161)
TESTING: checkCLibraries from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:161)
Determines the libraries needed to link with C
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.compilers/conftest -v -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.o -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.compilers/conftest -v -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.o -ldl
sh: mpicc for MPICH2 version 1.3.2p1
Possible ERROR while running linker: Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/lto-wrapper
Target: i686-pc-linux-gnu
Configured with: ../gcc-4.5.2/configure --prefix=/home/buildbot/install/pylith_linux_i686_binbot --enable-languages=c,c++,fortran
Thread model: posix
gcc version 4.5.2 (GCC)
COMPILER_PATH=/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/
LIBRARY_PATH=/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../:/lib/:/usr/lib/
COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-5zlcDX/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-Wwrite-strings' '-Wno-strict-aliasing' '-Wno-unknown-pragmas' '-O' '-I/home/buildbot/install/pylith_linux_i686_binbot/include' '-L/home/buildbot/install/pylith_linux_i686_binbot/lib' '-mtune=generic' '-march=pentiumpro'
/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/collect2 --eh-frame-hdr -m elf_i386 -dynamic-linker /lib/ld-linux.so.2 -o /tmp/petsc-5zlcDX/config.compilers/conftest /usr/lib/crt1.o /usr/lib/crti.o /home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/crtbegin.o -L/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../.. /tmp/petsc-5zlcDX/config.compilers/conftest.o -ldl -rpath /home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc --as-needed -lgcc_s --no-as-needed -lc -lgcc --as-needed -lgcc_s --no-as-needed /home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/crtend.o /usr/lib/crtn.o
output: mpicc for MPICH2 version 1.3.2p1
error message = {Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/lto-wrapper
Target: i686-pc-linux-gnu
Configured with: ../gcc-4.5.2/configure --prefix=/home/buildbot/install/pylith_linux_i686_binbot --enable-languages=c,c++,fortran
Thread model: posix
gcc version 4.5.2 (GCC)
COMPILER_PATH=/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/
LIBRARY_PATH=/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../:/lib/:/usr/lib/
COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-5zlcDX/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-Wwrite-strings' '-Wno-strict-aliasing' '-Wno-unknown-pragmas' '-O' '-I/home/buildbot/install/pylith_linux_i686_binbot/include' '-L/home/buildbot/install/pylith_linux_i686_binbot/lib' '-mtune=generic' '-march=pentiumpro'
/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/collect2 --eh-frame-hdr -m elf_i386 -dynamic-linker /lib/ld-linux.so.2 -o /tmp/petsc-5zlcDX/config.compilers/conftest /usr/lib/crt1.o /usr/lib/crti.o /home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/crtbegin.o -L/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../.. /tmp/petsc-5zlcDX/config.compilers/conftest.o -ldl -rpath /home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc --as-needed -lgcc_s --no-as-needed -lc -lgcc --as-needed -lgcc_s --no-as-needed /home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/crtend.o /usr/lib/crtn.o
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.compilers/conftest -v -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.o -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Popping language C
compilers: Checking arg mpicc
compilers: Unknown arg mpicc
compilers: Checking arg for
compilers: Unknown arg for
compilers: Checking arg MPICH2
compilers: Unknown arg MPICH2
compilers: Checking arg version
compilers: Unknown arg version
compilers: Checking arg 1.3.2p1
compilers: Unknown arg 1.3.2p1
compilers: Checking arg Using
compilers: Unknown arg Using
compilers: Checking arg built-in
compilers: Unknown arg built-in
compilers: Checking arg specs.
compilers: Unknown arg specs.
compilers: Checking arg COLLECT_GCC=gcc
compilers: Unknown arg COLLECT_GCC=gcc
compilers: Checking arg COLLECT_LTO_WRAPPER=/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/lto-wrapper
compilers: Unknown arg COLLECT_LTO_WRAPPER=/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/lto-wrapper
compilers: Checking arg Target:
compilers: Unknown arg Target:
compilers: Checking arg i686-pc-linux-gnu
compilers: Unknown arg i686-pc-linux-gnu
compilers: Checking arg Configured
compilers: Unknown arg Configured
compilers: Checking arg with:
compilers: Unknown arg with:
compilers: Checking arg ../gcc-4.5.2/configure
compilers: Unknown arg ../gcc-4.5.2/configure
compilers: Checking arg --prefix=/home/buildbot/install/pylith_linux_i686_binbot
compilers: Unknown arg --prefix=/home/buildbot/install/pylith_linux_i686_binbot
compilers: Checking arg --enable-languages=c,c++,fortran
compilers: Unknown arg --enable-languages=c,c++,fortran
compilers: Checking arg Thread
compilers: Unknown arg Thread
compilers: Checking arg model:
compilers: Unknown arg model:
compilers: Checking arg posix
compilers: Unknown arg posix
compilers: Checking arg gcc
compilers: Unknown arg gcc
compilers: Checking arg version
compilers: Unknown arg version
compilers: Checking arg 4.5.2
compilers: Unknown arg 4.5.2
compilers: Checking arg (GCC)
compilers: Unknown arg (GCC)
compilers: Checking arg COMPILER_PATH=/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/
compilers: Unknown arg COMPILER_PATH=/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/
compilers: Checking arg LIBRARY_PATH=/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../:/lib/:/usr/lib/
compilers: Unknown arg LIBRARY_PATH=/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../:/lib/:/usr/lib/
compilers: Checking arg COLLECT_GCC_OPTIONS=
compilers: Unknown arg COLLECT_GCC_OPTIONS=
compilers: Checking arg /home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/collect2
compilers: Unknown arg /home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/collect2
compilers: Checking arg --eh-frame-hdr
compilers: Unknown arg --eh-frame-hdr
compilers: Checking arg -m
compilers: Unknown arg -m
compilers: Checking arg elf_i386
compilers: Unknown arg elf_i386
compilers: Checking arg -dynamic-linker
compilers: Unknown arg -dynamic-linker
compilers: Checking arg /lib/ld-linux.so.2
compilers: Unknown arg /lib/ld-linux.so.2
compilers: Checking arg -o
compilers: Unknown arg -o
compilers: Checking arg /tmp/petsc-5zlcDX/config.compilers/conftest
compilers: Unknown arg /tmp/petsc-5zlcDX/config.compilers/conftest
compilers: Checking arg /usr/lib/crt1.o
compilers: Unknown arg /usr/lib/crt1.o
compilers: Checking arg /usr/lib/crti.o
compilers: Unknown arg /usr/lib/crti.o
compilers: Checking arg /home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/crtbegin.o
compilers: Unknown arg /home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/crtbegin.o
compilers: Checking arg -L/home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Found library directory: -L/home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Checking arg -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2
compilers: Found library directory: -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2
compilers: Checking arg -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../..
compilers: Found library directory: -L/home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Checking arg /tmp/petsc-5zlcDX/config.compilers/conftest.o
compilers: Unknown arg /tmp/petsc-5zlcDX/config.compilers/conftest.o
compilers: Checking arg -ldl
compilers: Found library : -ldl
compilers: Checking arg -rpath
compilers: Found -rpath library: /home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Checking arg -lmpich
compilers: Found library : -lmpich
compilers: Checking arg -lopa
compilers: Found library : -lopa
compilers: Checking arg -lmpl
compilers: Found library : -lmpl
compilers: Checking arg -lrt
compilers: Found library : -lrt
compilers: Checking arg -lpthread
compilers: Found library : -lpthread
compilers: Checking arg -lgcc
compilers: Skipping system library: -lgcc
compilers: Checking arg --as-needed
compilers: Unknown arg --as-needed
compilers: Checking arg -lgcc_s
compilers: Found library : -lgcc_s
compilers: Checking arg --no-as-needed
compilers: Unknown arg --no-as-needed
compilers: Checking arg -lc
compilers: Skipping system library: -lc
compilers: Checking arg -lgcc
compilers: Skipping system library: -lgcc
compilers: Checking arg --as-needed
compilers: Unknown arg --as-needed
compilers: Checking arg -lgcc_s
compilers: Checking arg --no-as-needed
compilers: Unknown arg --no-as-needed
compilers: Checking arg /home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/crtend.o
compilers: Unknown arg /home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/crtend.o
compilers: Checking arg /usr/lib/crtn.o
compilers: Unknown arg /usr/lib/crtn.o
compilers: Libraries needed to link C code with another linker: ['-Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib', '-L/home/buildbot/install/pylith_linux_i686_binbot/lib', '-Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2', '-L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2', '-Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib', '-L/home/buildbot/install/pylith_linux_i686_binbot/lib', '-ldl', '-Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib', '-lmpich', '-lopa', '-lmpl', '-lrt', '-lpthread', '-lgcc_s']
compilers: Check that C libraries can be used from Fortran
Pushing language FC
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
sh:
Successful compile:
Source:
program main
end
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
sh:
Successful compile:
Source:
program main
end
Pushing language FC
Popping language FC
sh: mpif90 -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpif90 -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
sh:
Successful compile:
Source:
program main
end
Pushing language FC
Popping language FC
sh: mpif90 -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpif90 -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Executing: /tmp/petsc-5zlcDX/config.setCompilers/conftest
sh: /tmp/petsc-5zlcDX/config.setCompilers/conftest
Executing: /tmp/petsc-5zlcDX/config.setCompilers/conftest
sh:
Popping language FC
================================================================================
TEST checkDependencyGenerationFlag from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:1266)
TESTING: checkDependencyGenerationFlag from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:1266)
Check if -MMD works for dependency generation, and add it if it does
Pushing language C
Trying C compiler flag -MMD
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -MMD -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -MMD -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Valid C linker flag -MMD
Testing C compiler flag -MMD
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -MMD /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -MMD /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Popping language C
Pushing language Cxx
Trying Cxx compiler flag -MMD
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Pushing language CXX
Popping language CXX
sh: mpicxx -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -MMD -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicxx -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -MMD -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Valid Cxx linker flag -MMD
Testing Cxx compiler flag -MMD
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC -MMD /tmp/petsc-5zlcDX/config.setCompilers/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC -MMD /tmp/petsc-5zlcDX/config.setCompilers/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Popping language Cxx
Pushing language FC
Trying FC compiler flag -MMD
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
sh:
Successful compile:
Source:
program main
end
Pushing language FC
Popping language FC
sh: mpif90 -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -MMD -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpif90 -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -MMD -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Valid FC linker flag -MMD
Testing FC compiler flag -MMD
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O -MMD /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O -MMD /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
sh:
Successful compile:
Source:
program main
end
Popping language FC
sh: mpicxx --help
Executing: mpicxx --help
sh: Usage: g++ [options] file...
Options:
-pass-exit-codes Exit with highest error code from a phase
--help Display this information
--target-help Display target specific command line options
--help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...]
Display specific types of command line options
(Use '-v --help' to display command line options of sub-processes)
--version Display compiler version information
-dumpspecs Display all of the built in spec strings
-dumpversion Display the version of the compiler
-dumpmachine Display the compiler's target processor
-print-search-dirs Display the directories in the compiler's search path
-print-libgcc-file-name Display the name of the compiler's companion library
-print-file-name=<lib> Display the full path to library <lib>
-print-prog-name=<prog> Display the full path to compiler component <prog>
-print-multi-directory Display the root directory for versions of libgcc
-print-multi-lib Display the mapping between command line options and
multiple library search directories
-print-multi-os-directory Display the relative path to OS libraries
-print-sysroot Display the target libraries directory
-print-sysroot-headers-suffix Display the sysroot suffix used to find headers
-Wa,<options> Pass comma-separated <options> on to the assembler
-Wp,<options> Pass comma-separated <options> on to the preprocessor
-Wl,<options> Pass comma-separated <options> on to the linker
-Xassembler <arg> Pass <arg> on to the assembler
-Xpreprocessor <arg> Pass <arg> on to the preprocessor
-Xlinker <arg> Pass <arg> on to the linker
-combine Pass multiple source files to compiler at once
-save-temps Do not delete intermediate files
-save-temps=<arg> Do not delete intermediate files
-no-canonical-prefixes Do not canonicalize paths when building relative
prefixes to other gcc components
-pipe Use pipes rather than intermediate files
-time Time the execution of each subprocess
-specs=<file> Override built-in specs with the contents of <file>
-std=<standard> Assume that the input sources are for <standard>
--sysroot=<directory> Use <directory> as the root directory for headers
and libraries
-B <directory> Add <directory> to the compiler's search paths
-b <machine> Run gcc for target <machine>, if installed
-V <version> Run gcc version number <version>, if installed
-v Display the programs invoked by the compiler
-### Like -v but options quoted and commands not executed
-E Preprocess only; do not compile, assemble or link
-S Compile only; do not assemble or link
-c Compile and assemble, but do not link
-o <file> Place the output into <file>
-x <language> Specify the language of the following input files
Permissible languages include: c c++ assembler none
'none' means revert to the default behavior of
guessing the language based on the file's extension
Options starting with -g, -f, -m, -O, -W, or --param are automatically
passed on to the various sub-processes invoked by g++. In order to pass
other options on to these processes the -W<letter> options must be used.
For bug reporting instructions, please see:
<http://gcc.gnu.org/bugs.html>.
================================================================================
TEST checkRestrict from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:134)
TESTING: checkRestrict from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:134)
Check for the C/CXX restrict keyword
Pushing language Cxx
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.compilers/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.compilers/conftest.cc
sh:
Possible ERROR while running compiler: ret = 256
error message = {/tmp/petsc-5zlcDX/config.compilers/conftest.cc: In function ‘int main()’:
/tmp/petsc-5zlcDX/config.compilers/conftest.cc:5:18: error: expected initializer before ‘x’
}
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
float * restrict x;;
return 0;
}
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.compilers/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.compilers/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
float * __restrict__ x;;
return 0;
}
compilers: Set Cxx restrict keyword to __restrict__
Defined "CXX_RESTRICT" to " __restrict__"
Popping language Cxx
================================================================================
TEST checkCxxNamespace from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:354)
TESTING: checkCxxNamespace from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:354)
Checks that C++ compiler supports namespaces, and if it does defines HAVE_CXX_NAMESPACE
Pushing language Cxx
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.compilers/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.compilers/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
namespace petsc {int dummy;}
int main() {
;
return 0;
}
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.compilers/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.compilers/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
template <class dummy> struct a {};
namespace trouble{
template <class dummy> struct a : public ::a<dummy> {};
}
trouble::a<int> uugh;
int main() {
;
return 0;
}
Popping language Cxx
compilers: C++ has namespaces
Defined "HAVE_CXX_NAMESPACE" to "1"
================================================================================
TEST checkCxxOptionalExtensions from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:329)
TESTING: checkCxxOptionalExtensions from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:329)
Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++
Pushing language Cxx
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
class somename { int i; };;
return 0;
}
Added Cxx compiler flag
Popping language Cxx
================================================================================
TEST checkCxxStaticInline from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:119)
TESTING: checkCxxStaticInline from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:119)
Check for C++ keyword: static inline
Pushing language Cxx
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.compilers/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.compilers/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
static inline int foo(int a) {return a;}
int main() {
int i = foo(1);;
return 0;
}
compilers: Set Cxx StaticInline keyword to static inline
Popping language Cxx
Defined "CXX_STATIC_INLINE" to "static inline"
================================================================================
TEST checkCxxLibraries from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:369)
TESTING: checkCxxLibraries from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:369)
Determines the libraries needed to link with C++
Pushing language Cxx
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.compilers/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.compilers/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Pushing language CXX
Popping language CXX
sh: mpicxx -o /tmp/petsc-5zlcDX/config.compilers/conftest -v -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.compilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicxx -o /tmp/petsc-5zlcDX/config.compilers/conftest -v -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.compilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh: mpicxx for MPICH2 version 1.3.2p1
Possible ERROR while running linker: Using built-in specs.
COLLECT_GCC=g++
COLLECT_LTO_WRAPPER=/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/lto-wrapper
Target: i686-pc-linux-gnu
Configured with: ../gcc-4.5.2/configure --prefix=/home/buildbot/install/pylith_linux_i686_binbot --enable-languages=c,c++,fortran
Thread model: posix
gcc version 4.5.2 (GCC)
COMPILER_PATH=/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/
LIBRARY_PATH=/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../:/lib/:/usr/lib/
COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-5zlcDX/config.compilers/conftest' '-v' '-DMPICH_IGNORE_CXX_SEEK' '-O' '-L/home/buildbot/install/pylith_linux_i686_binbot/lib' '-L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2' '-L/home/buildbot/install/pylith_linux_i686_binbot/lib' '-I/home/buildbot/install/pylith_linux_i686_binbot/include' '-L/home/buildbot/install/pylith_linux_i686_binbot/lib' '-shared-libgcc' '-mtune=generic' '-march=pentiumpro'
/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/collect2 --eh-frame-hdr -m elf_i386 -dynamic-linker /lib/ld-linux.so.2 -o /tmp/petsc-5zlcDX/config.compilers/conftest /usr/lib/crt1.o /usr/lib/crti.o /home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/crtbegin.o -L/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../.. /tmp/petsc-5zlcDX/config.compilers/conftest.o -rpath /home/buildbot/install/pylith_linux_i686_binbot/lib -rpath /home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -rpath /home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -rpath /home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl -rpath /home/buildbot/install/pylith_linux_i686_binbot/lib -lmpichcxx -lmpich -lopa -lmpl -lrt -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/crtend.o /usr/lib/crtn.o
output: mpicxx for MPICH2 version 1.3.2p1
error message = {Using built-in specs.
COLLECT_GCC=g++
COLLECT_LTO_WRAPPER=/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/lto-wrapper
Target: i686-pc-linux-gnu
Configured with: ../gcc-4.5.2/configure --prefix=/home/buildbot/install/pylith_linux_i686_binbot --enable-languages=c,c++,fortran
Thread model: posix
gcc version 4.5.2 (GCC)
COMPILER_PATH=/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/
LIBRARY_PATH=/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../:/lib/:/usr/lib/
COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-5zlcDX/config.compilers/conftest' '-v' '-DMPICH_IGNORE_CXX_SEEK' '-O' '-L/home/buildbot/install/pylith_linux_i686_binbot/lib' '-L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2' '-L/home/buildbot/install/pylith_linux_i686_binbot/lib' '-I/home/buildbot/install/pylith_linux_i686_binbot/include' '-L/home/buildbot/install/pylith_linux_i686_binbot/lib' '-shared-libgcc' '-mtune=generic' '-march=pentiumpro'
/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/collect2 --eh-frame-hdr -m elf_i386 -dynamic-linker /lib/ld-linux.so.2 -o /tmp/petsc-5zlcDX/config.compilers/conftest /usr/lib/crt1.o /usr/lib/crti.o /home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/crtbegin.o -L/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../.. /tmp/petsc-5zlcDX/config.compilers/conftest.o -rpath /home/buildbot/install/pylith_linux_i686_binbot/lib -rpath /home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -rpath /home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -rpath /home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl -rpath /home/buildbot/install/pylith_linux_i686_binbot/lib -lmpichcxx -lmpich -lopa -lmpl -lrt -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/crtend.o /usr/lib/crtn.o
}
Pushing language CXX
Popping language CXX
in mpicxx -o /tmp/petsc-5zlcDX/config.compilers/conftest -v -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.compilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Popping language Cxx
compilers: Checking arg mpicxx
compilers: Unknown arg mpicxx
compilers: Checking arg for
compilers: Unknown arg for
compilers: Checking arg MPICH2
compilers: Unknown arg MPICH2
compilers: Checking arg version
compilers: Unknown arg version
compilers: Checking arg 1.3.2p1
compilers: Unknown arg 1.3.2p1
compilers: Checking arg Using
compilers: Unknown arg Using
compilers: Checking arg built-in
compilers: Unknown arg built-in
compilers: Checking arg specs.
compilers: Unknown arg specs.
compilers: Checking arg COLLECT_GCC=g++
compilers: Unknown arg COLLECT_GCC=g++
compilers: Checking arg COLLECT_LTO_WRAPPER=/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/lto-wrapper
compilers: Unknown arg COLLECT_LTO_WRAPPER=/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/lto-wrapper
compilers: Checking arg Target:
compilers: Unknown arg Target:
compilers: Checking arg i686-pc-linux-gnu
compilers: Unknown arg i686-pc-linux-gnu
compilers: Checking arg Configured
compilers: Unknown arg Configured
compilers: Checking arg with:
compilers: Unknown arg with:
compilers: Checking arg ../gcc-4.5.2/configure
compilers: Unknown arg ../gcc-4.5.2/configure
compilers: Checking arg --prefix=/home/buildbot/install/pylith_linux_i686_binbot
compilers: Unknown arg --prefix=/home/buildbot/install/pylith_linux_i686_binbot
compilers: Checking arg --enable-languages=c,c++,fortran
compilers: Unknown arg --enable-languages=c,c++,fortran
compilers: Checking arg Thread
compilers: Unknown arg Thread
compilers: Checking arg model:
compilers: Unknown arg model:
compilers: Checking arg posix
compilers: Unknown arg posix
compilers: Checking arg gcc
compilers: Unknown arg gcc
compilers: Checking arg version
compilers: Unknown arg version
compilers: Checking arg 4.5.2
compilers: Unknown arg 4.5.2
compilers: Checking arg (GCC)
compilers: Unknown arg (GCC)
compilers: Checking arg COMPILER_PATH=/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/
compilers: Unknown arg COMPILER_PATH=/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/
compilers: Checking arg LIBRARY_PATH=/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../:/lib/:/usr/lib/
compilers: Unknown arg LIBRARY_PATH=/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../:/lib/:/usr/lib/
compilers: Checking arg COLLECT_GCC_OPTIONS=
compilers: Unknown arg COLLECT_GCC_OPTIONS=
compilers: Checking arg /home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/collect2
compilers: Unknown arg /home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/collect2
compilers: Checking arg --eh-frame-hdr
compilers: Unknown arg --eh-frame-hdr
compilers: Checking arg -m
compilers: Unknown arg -m
compilers: Checking arg elf_i386
compilers: Unknown arg elf_i386
compilers: Checking arg -dynamic-linker
compilers: Unknown arg -dynamic-linker
compilers: Checking arg /lib/ld-linux.so.2
compilers: Unknown arg /lib/ld-linux.so.2
compilers: Checking arg -o
compilers: Unknown arg -o
compilers: Checking arg /tmp/petsc-5zlcDX/config.compilers/conftest
compilers: Unknown arg /tmp/petsc-5zlcDX/config.compilers/conftest
compilers: Checking arg /usr/lib/crt1.o
compilers: Unknown arg /usr/lib/crt1.o
compilers: Checking arg /usr/lib/crti.o
compilers: Unknown arg /usr/lib/crti.o
compilers: Checking arg /home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/crtbegin.o
compilers: Unknown arg /home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/crtbegin.o
compilers: Checking arg -L/home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Found library directory: -L/home/buildbot/install/pylith_linux_i686_binbot/lib
Library directory already in C list so skipping in C++
compilers: Checking arg -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2
compilers: Found library directory: -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2
Library directory already in C list so skipping in C++
compilers: Checking arg -L/home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Checking arg -L/home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Checking arg -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2
compilers: Checking arg -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../..
compilers: Checking arg /tmp/petsc-5zlcDX/config.compilers/conftest.o
compilers: Unknown arg /tmp/petsc-5zlcDX/config.compilers/conftest.o
compilers: Checking arg -rpath
compilers: Found -rpath library: /home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Checking arg -rpath
compilers: Found -rpath library: /home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2
compilers: Checking arg -rpath
compilers: Already in rpathflags, skipping:-rpath
compilers: Checking arg -ldl
compilers: Found library: -ldl
Library already in C list so skipping in C++
compilers: Checking arg -rpath
compilers: Already in rpathflags, skipping:-rpath
compilers: Checking arg -lmpich
compilers: Found library: -lmpich
Library already in C list so skipping in C++
compilers: Checking arg -lopa
compilers: Found library: -lopa
Library already in C list so skipping in C++
compilers: Checking arg -lmpl
compilers: Found library: -lmpl
Library already in C list so skipping in C++
compilers: Checking arg -lrt
compilers: Found library: -lrt
Library already in C list so skipping in C++
compilers: Checking arg -lpthread
compilers: Found library: -lpthread
Library already in C list so skipping in C++
compilers: Checking arg -lgcc_s
compilers: Found library: -lgcc_s
Library already in C list so skipping in C++
compilers: Checking arg -ldl
compilers: Checking arg -rpath
compilers: Already in rpathflags, skipping:-rpath
compilers: Checking arg -lmpichcxx
compilers: Found library: -lmpichcxx
compilers: Checking arg -lmpich
compilers: Checking arg -lopa
compilers: Checking arg -lmpl
compilers: Checking arg -lrt
compilers: Checking arg -lpthread
compilers: Checking arg -lstdc++
compilers: Found library: -lstdc++
compilers: Checking arg -lm
compilers: Checking arg -lgcc_s
compilers: Checking arg -lgcc
compilers: Skipping system library: -lgcc
compilers: Checking arg -lc
compilers: Skipping system library: -lc
compilers: Checking arg -lgcc_s
compilers: Checking arg -lgcc
compilers: Skipping system library: -lgcc
compilers: Checking arg /home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/crtend.o
compilers: Unknown arg /home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/crtend.o
compilers: Checking arg /usr/lib/crtn.o
compilers: Unknown arg /usr/lib/crtn.o
compilers: Libraries needed to link Cxx code with another linker: ['-Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib', '-Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2', '-lmpichcxx', '-lstdc++']
compilers: Check that Cxx libraries can be used from C
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lmpichcxx -lstdc++ -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lmpichcxx -lstdc++ -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lmpichcxx -lstdc++ -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lmpichcxx -lstdc++ -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Executing: /tmp/petsc-5zlcDX/config.setCompilers/conftest
sh: /tmp/petsc-5zlcDX/config.setCompilers/conftest
Executing: /tmp/petsc-5zlcDX/config.setCompilers/conftest
sh:
Popping language C
compilers: Check that Cxx libraries can be used from Fortran
Pushing language FC
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
sh:
Successful compile:
Source:
program main
end
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
sh:
Successful compile:
Source:
program main
end
Pushing language FC
Popping language FC
sh: mpif90 -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lmpichcxx -lstdc++ -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpif90 -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lmpichcxx -lstdc++ -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
sh:
Successful compile:
Source:
program main
end
Pushing language FC
Popping language FC
sh: mpif90 -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lmpichcxx -lstdc++ -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpif90 -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lmpichcxx -lstdc++ -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Executing: /tmp/petsc-5zlcDX/config.setCompilers/conftest
sh: /tmp/petsc-5zlcDX/config.setCompilers/conftest
Executing: /tmp/petsc-5zlcDX/config.setCompilers/conftest
sh:
Popping language FC
================================================================================
TEST checkFortranTypeSizes from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:530)
TESTING: checkFortranTypeSizes from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:530)
Check whether real*8 is supported and suggest flags which will allow support
Pushing language FC
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.F
sh:
Successful compile:
Source:
program main
real*8 variable
end
Popping language FC
================================================================================
TEST checkFortranNameMangling from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:589)
TESTING: checkFortranNameMangling from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:589)
Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL
Testing Fortran mangling type underscore with code void d1chk_(void){return;}
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
void d1chk_(void){return;}
Popping language C
Pushing language FC
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.F
sh:
Successful compile:
Source:
program main
call d1chk()
end
Pushing language FC
Popping language FC
sh: mpif90 -o /tmp/petsc-5zlcDX/config.compilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.o /tmp/petsc-5zlcDX/config.compilers/confc.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpif90 -o /tmp/petsc-5zlcDX/config.compilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.o /tmp/petsc-5zlcDX/config.compilers/confc.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Popping language FC
compilers: Fortran name mangling is underscore
Defined "HAVE_FORTRAN_UNDERSCORE" to "1"
================================================================================
TEST checkFortranNameManglingDouble from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:626)
TESTING: checkFortranNameManglingDouble from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:626)
Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
void d1_chk__(void){return;}
Popping language C
Pushing language FC
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.F
sh:
Successful compile:
Source:
program main
call d1_chk()
end
Pushing language FC
Popping language FC
sh: mpif90 -o /tmp/petsc-5zlcDX/config.compilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.o /tmp/petsc-5zlcDX/config.compilers/confc.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpif90 -o /tmp/petsc-5zlcDX/config.compilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.o /tmp/petsc-5zlcDX/config.compilers/confc.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.compilers/conftest.o: In function `main':
conftest.F:(.text+0x3e): undefined reference to `d1_chk_'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.compilers/conftest.o: In function `main':
conftest.F:(.text+0x3e): undefined reference to `d1_chk_'
collect2: ld returned 1 exit status
}
Pushing language FC
Popping language FC
in mpif90 -o /tmp/petsc-5zlcDX/config.compilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.o /tmp/petsc-5zlcDX/config.compilers/confc.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
program main
call d1_chk()
end
Popping language FC
================================================================================
TEST checkFortranPreprocessor from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:636)
TESTING: checkFortranPreprocessor from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:636)
Determine if Fortran handles preprocessing properly
Pushing language FC
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
sh:
Successful compile:
Source:
program main
#define dummy
dummy
#ifndef dummy
fooey
#endif
end
Added FC compiler flag
Popping language FC
compilers: Fortran uses CPP preprocessor
================================================================================
TEST checkFortranDefineCompilerOption from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:657)
TESTING: checkFortranDefineCompilerOption from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:657)
Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro
Pushing language FC
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O -DTesting /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O -DTesting /tmp/petsc-5zlcDX/config.setCompilers/conftest.F
sh:
Successful compile:
Source:
program main
#define dummy
dummy
#ifndef Testing
fooey
#endif
end
Popping language FC
compilers: Fortran uses -D for defining macro
================================================================================
TEST checkFortranLibraries from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:673)
TESTING: checkFortranLibraries from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:673)
Substitutes for FLIBS the libraries needed to link with Fortran
This macro is intended to be used in those situations when it is
necessary to mix, e.g. C++ and Fortran 77, source code into a single
program or shared library.
For example, if object files from a C++ and Fortran 77 compiler must
be linked together, then the C++ compiler/linker must be used for
linking (since special C++-ish things need to happen at link time
like calling global constructors, instantiating templates, enabling
exception support, etc.).
However, the Fortran 77 intrinsic and run-time libraries must be
linked in as well, but the C++ compiler/linker does not know how to
add these Fortran 77 libraries.
This code was translated from the autoconf macro which was packaged in
its current form by Matthew D. Langston <langston@SLAC.Stanford.EDU>.
However, nearly all of this macro came from the OCTAVE_FLIBS macro in
octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton
for writing this extremely useful macro.
Pushing language FC
sh: mpif90 -V
Executing: mpif90 -V
sh:
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.F
sh:
Successful compile:
Source:
program main
end
Pushing language FC
Popping language FC
sh: mpif90 -o /tmp/petsc-5zlcDX/config.compilers/conftest -v -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpif90 -o /tmp/petsc-5zlcDX/config.compilers/conftest -v -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh: mpif90 for MPICH2 version 1.3.2p1
Possible ERROR while running linker: Driving: gfortran -o /tmp/petsc-5zlcDX/config.compilers/conftest -v -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl -I/home/buildbot/install/pylith_linux_i686_binbot/include -I/home/buildbot/install/pylith_linux_i686_binbot/include -L/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpichf90 -Wl,-rpath -Wl,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpichf90 -lmpich -lopa -lmpl -lrt -lpthread -lgfortran -lm -shared-libgcc
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/lto-wrapper
Target: i686-pc-linux-gnu
Configured with: ../gcc-4.5.2/configure --prefix=/home/buildbot/install/pylith_linux_i686_binbot --enable-languages=c,c++,fortran
Thread model: posix
gcc version 4.5.2 (GCC)
COMPILER_PATH=/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/
LIBRARY_PATH=/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../:/lib/:/usr/lib/
COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-5zlcDX/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-Wno-unused-variable' '-Wno-line-truncation' '-O' '-L/home/buildbot/install/pylith_linux_i686_binbot/lib' '-L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2' '-L/home/buildbot/install/pylith_linux_i686_binbot/lib' '-I/home/buildbot/install/pylith_linux_i686_binbot/include' '-I/home/buildbot/install/pylith_linux_i686_binbot/include' '-L/home/buildbot/install/pylith_linux_i686_binbot/lib' '-shared-libgcc' '-mtune=generic' '-march=pentiumpro'
/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/collect2 --eh-frame-hdr -m elf_i386 -dynamic-linker /lib/ld-linux.so.2 -o /tmp/petsc-5zlcDX/config.compilers/conftest /usr/lib/crt1.o /usr/lib/crti.o /home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/crtbegin.o -L/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../.. /tmp/petsc-5zlcDX/config.compilers/conftest.o -rpath /home/buildbot/install/pylith_linux_i686_binbot/lib -rpath /home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -rpath /home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -rpath /home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl -lmpichf90 -rpath /home/buildbot/install/pylith_linux_i686_binbot/lib -lmpichf90 -lmpich -lopa -lmpl -lrt -lpthread -lgfortran -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/crtend.o /usr/lib/crtn.o
output: mpif90 for MPICH2 version 1.3.2p1
error message = {Driving: gfortran -o /tmp/petsc-5zlcDX/config.compilers/conftest -v -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl -I/home/buildbot/install/pylith_linux_i686_binbot/include -I/home/buildbot/install/pylith_linux_i686_binbot/include -L/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpichf90 -Wl,-rpath -Wl,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpichf90 -lmpich -lopa -lmpl -lrt -lpthread -lgfortran -lm -shared-libgcc
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/lto-wrapper
Target: i686-pc-linux-gnu
Configured with: ../gcc-4.5.2/configure --prefix=/home/buildbot/install/pylith_linux_i686_binbot --enable-languages=c,c++,fortran
Thread model: posix
gcc version 4.5.2 (GCC)
COMPILER_PATH=/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/
LIBRARY_PATH=/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../:/lib/:/usr/lib/
COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-5zlcDX/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-Wno-unused-variable' '-Wno-line-truncation' '-O' '-L/home/buildbot/install/pylith_linux_i686_binbot/lib' '-L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2' '-L/home/buildbot/install/pylith_linux_i686_binbot/lib' '-I/home/buildbot/install/pylith_linux_i686_binbot/include' '-I/home/buildbot/install/pylith_linux_i686_binbot/include' '-L/home/buildbot/install/pylith_linux_i686_binbot/lib' '-shared-libgcc' '-mtune=generic' '-march=pentiumpro'
/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/collect2 --eh-frame-hdr -m elf_i386 -dynamic-linker /lib/ld-linux.so.2 -o /tmp/petsc-5zlcDX/config.compilers/conftest /usr/lib/crt1.o /usr/lib/crti.o /home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/crtbegin.o -L/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../.. /tmp/petsc-5zlcDX/config.compilers/conftest.o -rpath /home/buildbot/install/pylith_linux_i686_binbot/lib -rpath /home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -rpath /home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -rpath /home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl -lmpichf90 -rpath /home/buildbot/install/pylith_linux_i686_binbot/lib -lmpichf90 -lmpich -lopa -lmpl -lrt -lpthread -lgfortran -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/crtend.o /usr/lib/crtn.o
}
Pushing language FC
Popping language FC
in mpif90 -o /tmp/petsc-5zlcDX/config.compilers/conftest -v -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
program main
end
Popping language FC
compilers: Checking arg mpif90
compilers: Unknown arg mpif90
compilers: Checking arg for
compilers: Unknown arg for
compilers: Checking arg MPICH2
compilers: Unknown arg MPICH2
compilers: Checking arg version
compilers: Unknown arg version
compilers: Checking arg 1.3.2p1
compilers: Unknown arg 1.3.2p1
compilers: Checking arg Driving:
compilers: Unknown arg Driving:
compilers: Checking arg gfortran
compilers: Unknown arg gfortran
compilers: Checking arg -o
compilers: Unknown arg -o
compilers: Checking arg /tmp/petsc-5zlcDX/config.compilers/conftest
compilers: Unknown arg /tmp/petsc-5zlcDX/config.compilers/conftest
compilers: Checking arg -v
compilers: Unknown arg -v
compilers: Checking arg -fPIC
compilers: Unknown arg -fPIC
compilers: Checking arg -Wall
compilers: Unknown arg -Wall
compilers: Checking arg -Wno-unused-variable
compilers: Unknown arg -Wno-unused-variable
compilers: Checking arg -Wno-line-truncation
compilers: Unknown arg -Wno-line-truncation
compilers: Checking arg -O
compilers: Unknown arg -O
compilers: Checking arg /tmp/petsc-5zlcDX/config.compilers/conftest.o
compilers: Unknown arg /tmp/petsc-5zlcDX/config.compilers/conftest.o
compilers: Checking arg -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Unknown arg -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Checking arg -L/home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Found library directory: -L/home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Checking arg -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2
compilers: Unknown arg -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2
compilers: Checking arg -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2
compilers: Found library directory: -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2
compilers: Checking arg -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Unknown arg -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Checking arg -L/home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Already in lflags so skipping: -L/home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Checking arg -ldl
compilers: Found library: -ldl
compilers: Checking arg -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Unknown arg -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Checking arg -lmpich
compilers: Found library: -lmpich
compilers: Checking arg -lopa
compilers: Found library: -lopa
compilers: Checking arg -lmpl
compilers: Found library: -lmpl
compilers: Checking arg -lrt
compilers: Found library: -lrt
compilers: Checking arg -lpthread
compilers: Found library: -lpthread
compilers: Checking arg -lgcc_s
compilers: Found library: -lgcc_s
compilers: Checking arg -ldl
compilers: Already in lflags: -ldl
compilers: Checking arg -I/home/buildbot/install/pylith_linux_i686_binbot/include
compilers: Found include directory: /home/buildbot/install/pylith_linux_i686_binbot/include
compilers: Checking arg -I/home/buildbot/install/pylith_linux_i686_binbot/include
compilers: Found include directory: /home/buildbot/install/pylith_linux_i686_binbot/include
compilers: Checking arg -L/home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Already in lflags so skipping: -L/home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Checking arg -lmpichf90
compilers: Found library: -lmpichf90
compilers: Checking arg -Wl,-rpath
compilers: Unknown arg -Wl,-rpath
compilers: Checking arg -Wl,/home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Unknown arg -Wl,/home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Checking arg -lmpichf90
compilers: Already in lflags: -lmpichf90
compilers: Checking arg -lmpich
compilers: Already in lflags: -lmpich
compilers: Checking arg -lopa
compilers: Already in lflags: -lopa
compilers: Checking arg -lmpl
compilers: Already in lflags: -lmpl
compilers: Checking arg -lrt
compilers: Already in lflags: -lrt
compilers: Checking arg -lpthread
compilers: Already in lflags: -lpthread
compilers: Checking arg -lgfortran
compilers: Found library: -lgfortran
compilers: Checking arg -lm
compilers: Found library: -lm
compilers: Checking arg -shared-libgcc
compilers: Unknown arg -shared-libgcc
compilers: Checking arg Using
compilers: Unknown arg Using
compilers: Checking arg built-in
compilers: Unknown arg built-in
compilers: Checking arg specs.
compilers: Unknown arg specs.
compilers: Checking arg COLLECT_GCC=gfortran
compilers: Unknown arg COLLECT_GCC=gfortran
compilers: Checking arg COLLECT_LTO_WRAPPER=/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/lto-wrapper
compilers: Unknown arg COLLECT_LTO_WRAPPER=/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/lto-wrapper
compilers: Checking arg Target:
compilers: Unknown arg Target:
compilers: Checking arg i686-pc-linux-gnu
compilers: Unknown arg i686-pc-linux-gnu
compilers: Checking arg Configured
compilers: Unknown arg Configured
compilers: Checking arg with:
compilers: Unknown arg with:
compilers: Checking arg ../gcc-4.5.2/configure
compilers: Unknown arg ../gcc-4.5.2/configure
compilers: Checking arg --prefix=/home/buildbot/install/pylith_linux_i686_binbot
compilers: Unknown arg --prefix=/home/buildbot/install/pylith_linux_i686_binbot
compilers: Checking arg --enable-languages=c,c++,fortran
compilers: Unknown arg --enable-languages=c,c++,fortran
compilers: Checking arg Thread
compilers: Unknown arg Thread
compilers: Checking arg model:
compilers: Unknown arg model:
compilers: Checking arg posix
compilers: Unknown arg posix
compilers: Checking arg gcc
compilers: Unknown arg gcc
compilers: Checking arg version
compilers: Unknown arg version
compilers: Checking arg 4.5.2
compilers: Unknown arg 4.5.2
compilers: Checking arg (GCC)
compilers: Unknown arg (GCC)
compilers: Checking arg COMPILER_PATH=/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/
compilers: Skipping arg COMPILER_PATH=/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/
compilers: Checking arg LIBRARY_PATH=/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../:/lib/:/usr/lib/
compilers: Skipping arg LIBRARY_PATH=/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/:/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../../:/lib/:/usr/lib/
compilers: Checking arg COLLECT_GCC_OPTIONS=
compilers: Unknown arg COLLECT_GCC_OPTIONS=
compilers: Checking arg /home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/collect2
compilers: Unknown arg /home/buildbot/install/pylith_linux_i686_binbot/libexec/gcc/i686-pc-linux-gnu/4.5.2/collect2
compilers: Checking arg --eh-frame-hdr
compilers: Unknown arg --eh-frame-hdr
compilers: Checking arg -m
compilers: Unknown arg -m
compilers: Checking arg elf_i386
compilers: Unknown arg elf_i386
compilers: Checking arg -dynamic-linker
compilers: Unknown arg -dynamic-linker
compilers: Checking arg /lib/ld-linux.so.2
compilers: Unknown arg /lib/ld-linux.so.2
compilers: Checking arg -o
compilers: Unknown arg -o
compilers: Checking arg /tmp/petsc-5zlcDX/config.compilers/conftest
compilers: Unknown arg /tmp/petsc-5zlcDX/config.compilers/conftest
compilers: Checking arg /usr/lib/crt1.o
compilers: Unknown arg /usr/lib/crt1.o
compilers: Checking arg /usr/lib/crti.o
compilers: Unknown arg /usr/lib/crti.o
compilers: Checking arg /home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/crtbegin.o
compilers: Unknown arg /home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/crtbegin.o
compilers: Checking arg -L/home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Already in lflags so skipping: -L/home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Checking arg -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2
compilers: Already in lflags so skipping: -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2
compilers: Checking arg -L/home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Already in lflags so skipping: -L/home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Checking arg -L/home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Already in lflags so skipping: -L/home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Checking arg -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2
compilers: Already in lflags so skipping: -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2
compilers: Checking arg -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/../../..
compilers: Already in lflags so skipping: -L/home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Checking arg /tmp/petsc-5zlcDX/config.compilers/conftest.o
compilers: Unknown arg /tmp/petsc-5zlcDX/config.compilers/conftest.o
compilers: Checking arg -rpath
compilers: Found -rpath library: /home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Checking arg -rpath
compilers: Found -rpath library: /home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2
compilers: Checking arg -rpath
compilers: Already in rpathflags so skipping: -rpath
compilers: Checking arg -ldl
compilers: Already in lflags: -ldl
compilers: Checking arg -rpath
compilers: Already in rpathflags so skipping: -rpath
compilers: Checking arg -lmpich
compilers: Already in lflags: -lmpich
compilers: Checking arg -lopa
compilers: Already in lflags: -lopa
compilers: Checking arg -lmpl
compilers: Already in lflags: -lmpl
compilers: Checking arg -lrt
compilers: Already in lflags: -lrt
compilers: Checking arg -lpthread
compilers: Already in lflags: -lpthread
compilers: Checking arg -lgcc_s
compilers: Already in lflags: -lgcc_s
compilers: Checking arg -ldl
compilers: Already in lflags: -ldl
compilers: Checking arg -lmpichf90
compilers: Already in lflags: -lmpichf90
compilers: Checking arg -rpath
compilers: Already in rpathflags so skipping: -rpath
compilers: Checking arg -lmpichf90
compilers: Already in lflags: -lmpichf90
compilers: Checking arg -lmpich
compilers: Already in lflags: -lmpich
compilers: Checking arg -lopa
compilers: Already in lflags: -lopa
compilers: Checking arg -lmpl
compilers: Already in lflags: -lmpl
compilers: Checking arg -lrt
compilers: Already in lflags: -lrt
compilers: Checking arg -lpthread
compilers: Already in lflags: -lpthread
compilers: Checking arg -lgfortran
compilers: Already in lflags: -lgfortran
compilers: Checking arg -lm
compilers: Found library: -lm
compilers: Checking arg -lgcc_s
compilers: Already in lflags: -lgcc_s
compilers: Checking arg -lgcc
compilers: Found system library therefor skipping: -lgcc
compilers: Checking arg -lc
compilers: Found system library therefor skipping: -lc
compilers: Checking arg -lgcc_s
compilers: Already in lflags: -lgcc_s
compilers: Checking arg -lgcc
compilers: Found system library therefor skipping: -lgcc
compilers: Checking arg /home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/crtend.o
compilers: Unknown arg /home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/crtend.o
compilers: Checking arg /usr/lib/crtn.o
compilers: Unknown arg /usr/lib/crtn.o
compilers: Libraries needed to link Fortran code with the C linker: ['-Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib', '-L/home/buildbot/install/pylith_linux_i686_binbot/lib', '-Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2', '-L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2', '-ldl', '-lmpich', '-lopa', '-lmpl', '-lrt', '-lpthread', '-lgcc_s', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib', '-Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2', '-lm']
compilers: Libraries needed to link Fortran main with the C linker: []
compilers: Check that Fortran libraries can be used from C
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Executing: /tmp/petsc-5zlcDX/config.setCompilers/conftest
sh: /tmp/petsc-5zlcDX/config.setCompilers/conftest
Executing: /tmp/petsc-5zlcDX/config.setCompilers/conftest
sh:
Popping language C
compilers: Check for Intel PEPCF90 library
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl -lPEPCF90 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lm
Executing: mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl -lPEPCF90 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lm
sh:
Possible ERROR while running linker: /usr/bin/ld: cannot find -lPEPCF90
collect2: ld returned 1 exit status
output: ret = 256
error message = {/usr/bin/ld: cannot find -lPEPCF90
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl -lPEPCF90 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lm
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Popping language C
compilers: Intel PEPCF90 library does not exist
compilers: Check that Fortran libraries can be used from C++
Pushing language Cxx
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Pushing language CXX
Popping language CXX
sh: mpicxx -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicxx -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.setCompilers/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
;
return 0;
}
Pushing language CXX
Popping language CXX
sh: mpicxx -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicxx -o /tmp/petsc-5zlcDX/config.setCompilers/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.setCompilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Executing: /tmp/petsc-5zlcDX/config.setCompilers/conftest
sh: /tmp/petsc-5zlcDX/config.setCompilers/conftest
Executing: /tmp/petsc-5zlcDX/config.setCompilers/conftest
sh:
Popping language Cxx
compilers: Fortran libraries can be used from C++
================================================================================
TEST checkFortranLinkingCxx from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:1020)
TESTING: checkFortranLinkingCxx from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:1020)
Check that Fortran can be linked against C++
Pushing language Cxx
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.compilers/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.compilers/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
extern "C" void d1chk_(void);
void foo(void){d1chk_();}
Popping language Cxx
Pushing language Cxx
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.compilers/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.compilers/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
extern "C" void d1chk_(void);
void d1chk_(void){return;}
Popping language Cxx
Pushing language FC
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.F
sh:
Successful compile:
Source:
program main
call d1chk()
end
Pushing language FC
Popping language FC
sh: mpif90 -o /tmp/petsc-5zlcDX/config.compilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.o /tmp/petsc-5zlcDX/config.compilers/cxxobj.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s /tmp/petsc-5zlcDX/config.compilers/confc.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpif90 -o /tmp/petsc-5zlcDX/config.compilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.o /tmp/petsc-5zlcDX/config.compilers/cxxobj.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s /tmp/petsc-5zlcDX/config.compilers/confc.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Popping language FC
compilers: Fortran can link C++ functions
================================================================================
TEST checkFortran90 from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:1055)
TESTING: checkFortran90 from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:1055)
Determine whether the Fortran compiler handles F90
Pushing language FC
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.F
sh:
Successful compile:
Source:
program main
INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8)
INTEGER (KIND=int) :: ierr
ierr = 1
end
Pushing language FC
Popping language FC
sh: mpif90 -o /tmp/petsc-5zlcDX/config.compilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpif90 -o /tmp/petsc-5zlcDX/config.compilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "USING_F90" to "1"
Fortran compiler supports F90
Popping language FC
================================================================================
TEST checkFortran90Array from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:1068)
TESTING: checkFortran90Array from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:1068)
Check for F90 array interfaces
sh: uname -s
Executing: uname -s
sh: Linux
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.compilers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include<stdio.h>
#include <stdlib.h>
void f90arraytest_(void* a1, void* a2,void* a3, void* i)
{
printf("arrays [%p %p %p]\n",a1,a2,a3);
fflush(stdout);
return;
}
void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3)
{
printf("arrays [%p %p %p]\n",a1,a2,a3);
if ((p1 == p3) && (p1 != p2)) {
printf("pointers match! [%p %p] [%p]\n",p1,p3,p2);
fflush(stdout);
} else {
printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2);
fflush(stdout);
abort();
}
return;
}
Popping language C
Pushing language FC
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.F
sh:
Successful compile:
Source:
program main
Interface
Subroutine f90ptrtest(p1,p2,p3,i)
integer, pointer :: p1(:,:)
integer, pointer :: p2(:,:)
integer, pointer :: p3(:,:)
integer i
End Subroutine
End Interface
integer, pointer :: ptr1(:,:),ptr2(:,:)
integer, target :: array(6:8,9:21)
integer in
in = 25
ptr1 => array
ptr2 => array
call f90arraytest(ptr1,ptr2,ptr1,in)
call f90ptrtest(ptr1,ptr2,ptr1,in)
end
Pushing language FC
Popping language FC
sh: mpif90 -o /tmp/petsc-5zlcDX/config.compilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.o /tmp/petsc-5zlcDX/config.compilers/fooobj.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpif90 -o /tmp/petsc-5zlcDX/config.compilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.o /tmp/petsc-5zlcDX/config.compilers/fooobj.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Executing: /tmp/petsc-5zlcDX/config.compilers/conftest
sh: /tmp/petsc-5zlcDX/config.compilers/conftest
Executing: /tmp/petsc-5zlcDX/config.compilers/conftest
sh: arrays [0xbfb0ebf8 0xbfb0ebf8 0xbfb0ebf8]
arrays [0xbfb0ecb8 0xbfb0ec94 0xbfb0ecb8]
pointers do not match! [0xb7330ab8 0x8048461] [0x8048455]
ERROR while running executable: Could not execute "/tmp/petsc-5zlcDX/config.compilers/conftest":
arrays [0xbfb0ebf8 0xbfb0ebf8 0xbfb0ebf8]
arrays [0xbfb0ecb8 0xbfb0ec94 0xbfb0ecb8]
pointers do not match! [0xb7330ab8 0x8048461] [0x8048455]
Aborted
Popping language FC
compilers: F90 uses a single argument for array pointers
================================================================================
TEST checkFortranModuleInclude from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:1155)
TESTING: checkFortranModuleInclude from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:1155)
Figures out what flag is used to specify the include path for Fortran modules
Pushing language FC
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.F
sh:
Successful compile:
Source:
module configtest
integer testint
parameter (testint = 42)
end module configtest
Pushing language FC
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.F
sh:
Successful compile:
Source:
program main
use configtest
write(*,*) testint
end
Pushing language FC
Popping language FC
sh: mpif90 -o /tmp/petsc-5zlcDX/config.compilers/conftest -I/tmp/petsc-5zlcDX/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.o /tmp/petsc-5zlcDX/config.compilers/configtest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpif90 -o /tmp/petsc-5zlcDX/config.compilers/conftest -I/tmp/petsc-5zlcDX/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.o /tmp/petsc-5zlcDX/config.compilers/configtest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
compilers: Fortran module include flag -I found
Popping language FC
================================================================================
TEST checkFortranModuleOutput from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:1221)
TESTING: checkFortranModuleOutput from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:1221)
Figures out what flag is used to specify the include path for Fortran modules
Pushing language FC
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -module /tmp/petsc-5zlcDX/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -module /tmp/petsc-5zlcDX/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.F
sh:
Possible ERROR while running compiler: ret = 256
error message = {f951: error: unrecognized command line option "-module"
}
Source:
module configtest
integer testint
parameter (testint = 42)
end module configtest
compilers: Fortran module output flag -module compile failed
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -module:/tmp/petsc-5zlcDX/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -module:/tmp/petsc-5zlcDX/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.F
sh:
Possible ERROR while running compiler: ret = 256
error message = {f951: error: unrecognized command line option "-module:/tmp/petsc-5zlcDX/config.compilers/confdir"
}
Source:
module configtest
integer testint
parameter (testint = 42)
end module configtest
compilers: Fortran module output flag -module: compile failed
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fmod=/tmp/petsc-5zlcDX/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -fmod=/tmp/petsc-5zlcDX/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.F
sh:
Possible ERROR while running compiler: ret = 256
error message = {f951: error: unrecognized command line option "-fmod=/tmp/petsc-5zlcDX/config.compilers/confdir"
}
Source:
module configtest
integer testint
parameter (testint = 42)
end module configtest
compilers: Fortran module output flag -fmod= compile failed
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -J/tmp/petsc-5zlcDX/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.compilers/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -J/tmp/petsc-5zlcDX/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.compilers/conftest.F
sh:
Successful compile:
Source:
module configtest
integer testint
parameter (testint = 42)
end module configtest
compilers: Fortran module output flag -J found
Popping language FC
================================================================================
TEST setupFrameworkCompilers from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:1347)
TESTING: setupFrameworkCompilers from config.compilers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/compilers.py:1347)
================================================================================
TEST configureFortranCPP from PETSc.utilities.fortranCPP(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/fortranCPP.py:27)
TESTING: configureFortranCPP from PETSc.utilities.fortranCPP(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/fortranCPP.py:27)
Handle case where Fortran cannot preprocess properly
Defined make rule ".f.o .f90.o .f95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} -o $@ $<']
Defined make rule ".f.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o']
Defined make rule ".F.o .F90.o .F95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} -o $@ $<']
Defined make rule ".F.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o']
================================================================================
TEST checkStdC from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:105)
TESTING: checkStdC from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:105)
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.headers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.headers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.headers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdlib.h>
#include <stdarg.h>
#include <string.h>
#include <float.h>
int main() {
;
return 0;
}
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/string.h" 1 3 4
# 26 "/usr/include/string.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 27 "/usr/include/string.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 34 "/usr/include/string.h" 2 3 4
extern void *memcpy (void *__restrict __dest,
__const void *__restrict __src, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern void *memmove (void *__dest, __const void *__src, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern void *memccpy (void *__restrict __dest, __const void *__restrict __src,
int __c, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern void *memset (void *__s, int __c, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int memcmp (__const void *__s1, __const void *__s2, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern void *memchr (__const void *__s, int __c, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1)));
# 82 "/usr/include/string.h" 3 4
extern char *strcpy (char *__restrict __dest, __const char *__restrict __src)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *strncpy (char *__restrict __dest,
__const char *__restrict __src, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *strcat (char *__restrict __dest, __const char *__restrict __src)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *strncat (char *__restrict __dest, __const char *__restrict __src,
size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int strcmp (__const char *__s1, __const char *__s2)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern int strncmp (__const char *__s1, __const char *__s2, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern int strcoll (__const char *__s1, __const char *__s2)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern size_t strxfrm (char *__restrict __dest,
__const char *__restrict __src, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2)));
# 130 "/usr/include/string.h" 3 4
extern char *strdup (__const char *__s)
__attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1)));
# 165 "/usr/include/string.h" 3 4
extern char *strchr (__const char *__s, int __c)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1)));
extern char *strrchr (__const char *__s, int __c)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1)));
# 181 "/usr/include/string.h" 3 4
extern size_t strcspn (__const char *__s, __const char *__reject)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern size_t strspn (__const char *__s, __const char *__accept)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *strpbrk (__const char *__s, __const char *__accept)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *strstr (__const char *__haystack, __const char *__needle)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *strtok (char *__restrict __s, __const char *__restrict __delim)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2)));
extern char *__strtok_r (char *__restrict __s,
__const char *__restrict __delim,
char **__restrict __save_ptr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3)));
extern char *strtok_r (char *__restrict __s, __const char *__restrict __delim,
char **__restrict __save_ptr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3)));
# 240 "/usr/include/string.h" 3 4
extern size_t strlen (__const char *__s)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1)));
# 254 "/usr/include/string.h" 3 4
extern char *strerror (int __errnum) __attribute__ ((__nothrow__));
# 270 "/usr/include/string.h" 3 4
extern int strerror_r (int __errnum, char *__buf, size_t __buflen) __asm__ ("" "__xpg_strerror_r") __attribute__ ((__nothrow__))
__attribute__ ((__nonnull__ (2)));
# 294 "/usr/include/string.h" 3 4
extern void __bzero (void *__s, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern void bcopy (__const void *__src, void *__dest, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int bcmp (__const void *__s1, __const void *__s2, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *index (__const char *__s, int __c)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1)));
extern char *rindex (__const char *__s, int __c)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1)));
extern int ffs (int __i) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
# 331 "/usr/include/string.h" 3 4
extern int strcasecmp (__const char *__s1, __const char *__s2)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
# 354 "/usr/include/string.h" 3 4
extern char *strsep (char **__restrict __stringp,
__const char *__restrict __delim)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
# 432 "/usr/include/string.h" 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/stdlib.h" 1 3 4
# 25 "/usr/include/stdlib.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 26 "/usr/include/stdlib.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 323 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef long int wchar_t;
# 34 "/usr/include/stdlib.h" 2 3 4
# 96 "/usr/include/stdlib.h" 3 4
typedef struct
{
int quot;
int rem;
} div_t;
typedef struct
{
long int quot;
long int rem;
} ldiv_t;
# 140 "/usr/include/stdlib.h" 3 4
extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__)) ;
extern double atof (__const char *__nptr)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ;
extern int atoi (__const char *__nptr)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ;
extern long int atol (__const char *__nptr)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ;
__extension__ extern long long int atoll (__const char *__nptr)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ;
extern double strtod (__const char *__restrict __nptr,
char **__restrict __endptr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
# 182 "/usr/include/stdlib.h" 3 4
extern long int strtol (__const char *__restrict __nptr,
char **__restrict __endptr, int __base)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern unsigned long int strtoul (__const char *__restrict __nptr,
char **__restrict __endptr, int __base)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
__extension__
extern long long int strtoq (__const char *__restrict __nptr,
char **__restrict __endptr, int __base)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
__extension__
extern unsigned long long int strtouq (__const char *__restrict __nptr,
char **__restrict __endptr, int __base)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
__extension__
extern long long int strtoll (__const char *__restrict __nptr,
char **__restrict __endptr, int __base)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
__extension__
extern unsigned long long int strtoull (__const char *__restrict __nptr,
char **__restrict __endptr, int __base)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
# 311 "/usr/include/stdlib.h" 3 4
extern char *l64a (long int __n) __attribute__ ((__nothrow__)) ;
extern long int a64l (__const char *__s)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ;
# 1 "/usr/include/sys/types.h" 1 3 4
# 29 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 32 "/usr/include/sys/types.h" 2 3 4
typedef __u_char u_char;
typedef __u_short u_short;
typedef __u_int u_int;
typedef __u_long u_long;
typedef __quad_t quad_t;
typedef __u_quad_t u_quad_t;
typedef __fsid_t fsid_t;
typedef __loff_t loff_t;
typedef __ino_t ino_t;
# 62 "/usr/include/sys/types.h" 3 4
typedef __dev_t dev_t;
typedef __gid_t gid_t;
typedef __mode_t mode_t;
typedef __nlink_t nlink_t;
typedef __uid_t uid_t;
typedef __off_t off_t;
# 100 "/usr/include/sys/types.h" 3 4
typedef __pid_t pid_t;
typedef __id_t id_t;
typedef __ssize_t ssize_t;
typedef __daddr_t daddr_t;
typedef __caddr_t caddr_t;
typedef __key_t key_t;
# 133 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/time.h" 1 3 4
# 75 "/usr/include/time.h" 3 4
typedef __time_t time_t;
# 93 "/usr/include/time.h" 3 4
typedef __clockid_t clockid_t;
# 105 "/usr/include/time.h" 3 4
typedef __timer_t timer_t;
# 134 "/usr/include/sys/types.h" 2 3 4
# 147 "/usr/include/sys/types.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 148 "/usr/include/sys/types.h" 2 3 4
typedef unsigned long int ulong;
typedef unsigned short int ushort;
typedef unsigned int uint;
# 195 "/usr/include/sys/types.h" 3 4
typedef int int8_t __attribute__ ((__mode__ (__QI__)));
typedef int int16_t __attribute__ ((__mode__ (__HI__)));
typedef int int32_t __attribute__ ((__mode__ (__SI__)));
typedef int int64_t __attribute__ ((__mode__ (__DI__)));
typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__)));
typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__)));
typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__)));
typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__)));
typedef int register_t __attribute__ ((__mode__ (__word__)));
# 217 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/endian.h" 1 3 4
# 37 "/usr/include/endian.h" 3 4
# 1 "/usr/include/bits/endian.h" 1 3 4
# 38 "/usr/include/endian.h" 2 3 4
# 218 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/select.h" 1 3 4
# 31 "/usr/include/sys/select.h" 3 4
# 1 "/usr/include/bits/select.h" 1 3 4
# 32 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/sigset.h" 1 3 4
# 24 "/usr/include/bits/sigset.h" 3 4
typedef int __sig_atomic_t;
typedef struct
{
unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))];
} __sigset_t;
# 35 "/usr/include/sys/select.h" 2 3 4
typedef __sigset_t sigset_t;
# 1 "/usr/include/time.h" 1 3 4
# 121 "/usr/include/time.h" 3 4
struct timespec
{
__time_t tv_sec;
long int tv_nsec;
};
# 45 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/time.h" 1 3 4
# 69 "/usr/include/bits/time.h" 3 4
struct timeval
{
__time_t tv_sec;
__suseconds_t tv_usec;
};
# 47 "/usr/include/sys/select.h" 2 3 4
typedef __suseconds_t suseconds_t;
typedef long int __fd_mask;
# 67 "/usr/include/sys/select.h" 3 4
typedef struct
{
__fd_mask __fds_bits[1024 / (8 * sizeof (__fd_mask))];
} fd_set;
typedef __fd_mask fd_mask;
# 99 "/usr/include/sys/select.h" 3 4
# 109 "/usr/include/sys/select.h" 3 4
extern int select (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
struct timeval *__restrict __timeout);
# 121 "/usr/include/sys/select.h" 3 4
extern int pselect (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
const struct timespec *__restrict __timeout,
const __sigset_t *__restrict __sigmask);
# 221 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/sysmacros.h" 1 3 4
# 30 "/usr/include/sys/sysmacros.h" 3 4
__extension__
extern unsigned int gnu_dev_major (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned int gnu_dev_minor (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned long long int gnu_dev_makedev (unsigned int __major,
unsigned int __minor)
__attribute__ ((__nothrow__));
# 224 "/usr/include/sys/types.h" 2 3 4
# 235 "/usr/include/sys/types.h" 3 4
typedef __blkcnt_t blkcnt_t;
typedef __fsblkcnt_t fsblkcnt_t;
typedef __fsfilcnt_t fsfilcnt_t;
# 270 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/pthreadtypes.h" 1 3 4
# 23 "/usr/include/bits/pthreadtypes.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 24 "/usr/include/bits/pthreadtypes.h" 2 3 4
# 50 "/usr/include/bits/pthreadtypes.h" 3 4
typedef unsigned long int pthread_t;
typedef union
{
char __size[36];
long int __align;
} pthread_attr_t;
# 67 "/usr/include/bits/pthreadtypes.h" 3 4
typedef struct __pthread_internal_slist
{
struct __pthread_internal_slist *__next;
} __pthread_slist_t;
typedef union
{
struct __pthread_mutex_s
{
int __lock;
unsigned int __count;
int __owner;
int __kind;
unsigned int __nusers;
__extension__ union
{
int __spins;
__pthread_slist_t __list;
};
} __data;
char __size[24];
long int __align;
} pthread_mutex_t;
typedef union
{
char __size[4];
int __align;
} pthread_mutexattr_t;
typedef union
{
struct
{
int __lock;
unsigned int __futex;
__extension__ unsigned long long int __total_seq;
__extension__ unsigned long long int __wakeup_seq;
__extension__ unsigned long long int __woken_seq;
void *__mutex;
unsigned int __nwaiters;
unsigned int __broadcast_seq;
} __data;
char __size[48];
__extension__ long long int __align;
} pthread_cond_t;
typedef union
{
char __size[4];
int __align;
} pthread_condattr_t;
typedef unsigned int pthread_key_t;
typedef int pthread_once_t;
typedef union
{
# 170 "/usr/include/bits/pthreadtypes.h" 3 4
struct
{
int __lock;
unsigned int __nr_readers;
unsigned int __readers_wakeup;
unsigned int __writer_wakeup;
unsigned int __nr_readers_queued;
unsigned int __nr_writers_queued;
unsigned char __flags;
unsigned char __shared;
unsigned char __pad1;
unsigned char __pad2;
int __writer;
} __data;
char __size[32];
long int __align;
} pthread_rwlock_t;
typedef union
{
char __size[8];
long int __align;
} pthread_rwlockattr_t;
typedef volatile int pthread_spinlock_t;
typedef union
{
char __size[20];
long int __align;
} pthread_barrier_t;
typedef union
{
char __size[4];
int __align;
} pthread_barrierattr_t;
# 271 "/usr/include/sys/types.h" 2 3 4
# 321 "/usr/include/stdlib.h" 2 3 4
extern long int random (void) __attribute__ ((__nothrow__));
extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__));
extern char *initstate (unsigned int __seed, char *__statebuf,
size_t __statelen) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2)));
extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
struct random_data
{
int32_t *fptr;
int32_t *rptr;
int32_t *state;
int rand_type;
int rand_deg;
int rand_sep;
int32_t *end_ptr;
};
extern int random_r (struct random_data *__restrict __buf,
int32_t *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int srandom_r (unsigned int __seed, struct random_data *__buf)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2)));
extern int initstate_r (unsigned int __seed, char *__restrict __statebuf,
size_t __statelen,
struct random_data *__restrict __buf)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 4)));
extern int setstate_r (char *__restrict __statebuf,
struct random_data *__restrict __buf)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int rand (void) __attribute__ ((__nothrow__));
extern void srand (unsigned int __seed) __attribute__ ((__nothrow__));
extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__));
extern double drand48 (void) __attribute__ ((__nothrow__));
extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern long int lrand48 (void) __attribute__ ((__nothrow__));
extern long int nrand48 (unsigned short int __xsubi[3])
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern long int mrand48 (void) __attribute__ ((__nothrow__));
extern long int jrand48 (unsigned short int __xsubi[3])
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern void srand48 (long int __seedval) __attribute__ ((__nothrow__));
extern unsigned short int *seed48 (unsigned short int __seed16v[3])
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
struct drand48_data
{
unsigned short int __x[3];
unsigned short int __old_x[3];
unsigned short int __c;
unsigned short int __init;
unsigned long long int __a;
};
extern int drand48_r (struct drand48_data *__restrict __buffer,
double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int erand48_r (unsigned short int __xsubi[3],
struct drand48_data *__restrict __buffer,
double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int lrand48_r (struct drand48_data *__restrict __buffer,
long int *__restrict __result)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int nrand48_r (unsigned short int __xsubi[3],
struct drand48_data *__restrict __buffer,
long int *__restrict __result)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int mrand48_r (struct drand48_data *__restrict __buffer,
long int *__restrict __result)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int jrand48_r (unsigned short int __xsubi[3],
struct drand48_data *__restrict __buffer,
long int *__restrict __result)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int srand48_r (long int __seedval, struct drand48_data *__buffer)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2)));
extern int seed48_r (unsigned short int __seed16v[3],
struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int lcong48_r (unsigned short int __param[7],
struct drand48_data *__buffer)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern void *malloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ;
extern void *calloc (size_t __nmemb, size_t __size)
__attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ;
extern void *realloc (void *__ptr, size_t __size)
__attribute__ ((__nothrow__)) __attribute__ ((__warn_unused_result__));
extern void free (void *__ptr) __attribute__ ((__nothrow__));
extern void cfree (void *__ptr) __attribute__ ((__nothrow__));
# 1 "/usr/include/alloca.h" 1 3 4
# 25 "/usr/include/alloca.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 26 "/usr/include/alloca.h" 2 3 4
extern void *alloca (size_t __size) __attribute__ ((__nothrow__));
# 498 "/usr/include/stdlib.h" 2 3 4
extern void *valloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ;
extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern void abort (void) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__));
extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern void exit (int __status) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__));
# 543 "/usr/include/stdlib.h" 3 4
extern char *getenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern char *__secure_getenv (__const char *__name)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern int putenv (char *__string) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int setenv (__const char *__name, __const char *__value, int __replace)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2)));
extern int unsetenv (__const char *__name) __attribute__ ((__nothrow__));
extern int clearenv (void) __attribute__ ((__nothrow__));
# 583 "/usr/include/stdlib.h" 3 4
extern char *mktemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
# 594 "/usr/include/stdlib.h" 3 4
extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ;
# 614 "/usr/include/stdlib.h" 3 4
extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
# 640 "/usr/include/stdlib.h" 3 4
extern int system (__const char *__command) ;
# 662 "/usr/include/stdlib.h" 3 4
extern char *realpath (__const char *__restrict __name,
char *__restrict __resolved) __attribute__ ((__nothrow__)) ;
typedef int (*__compar_fn_t) (__const void *, __const void *);
extern void *bsearch (__const void *__key, __const void *__base,
size_t __nmemb, size_t __size, __compar_fn_t __compar)
__attribute__ ((__nonnull__ (1, 2, 5))) ;
extern void qsort (void *__base, size_t __nmemb, size_t __size,
__compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4)));
extern int abs (int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ;
extern long int labs (long int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ;
extern div_t div (int __numer, int __denom)
__attribute__ ((__nothrow__)) __attribute__ ((__const__)) ;
extern ldiv_t ldiv (long int __numer, long int __denom)
__attribute__ ((__nothrow__)) __attribute__ ((__const__)) ;
# 727 "/usr/include/stdlib.h" 3 4
extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt,
int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ;
extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt,
int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ;
extern char *gcvt (double __value, int __ndigit, char *__buf)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ;
extern char *qecvt (long double __value, int __ndigit,
int *__restrict __decpt, int *__restrict __sign)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ;
extern char *qfcvt (long double __value, int __ndigit,
int *__restrict __decpt, int *__restrict __sign)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ;
extern char *qgcvt (long double __value, int __ndigit, char *__buf)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ;
extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt,
int *__restrict __sign, char *__restrict __buf,
size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5)));
extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt,
int *__restrict __sign, char *__restrict __buf,
size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5)));
extern int qecvt_r (long double __value, int __ndigit,
int *__restrict __decpt, int *__restrict __sign,
char *__restrict __buf, size_t __len)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5)));
extern int qfcvt_r (long double __value, int __ndigit,
int *__restrict __decpt, int *__restrict __sign,
char *__restrict __buf, size_t __len)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5)));
extern int mblen (__const char *__s, size_t __n) __attribute__ ((__nothrow__)) ;
extern int mbtowc (wchar_t *__restrict __pwc,
__const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)) ;
extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__)) ;
extern size_t mbstowcs (wchar_t *__restrict __pwcs,
__const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__));
extern size_t wcstombs (char *__restrict __s,
__const wchar_t *__restrict __pwcs, size_t __n)
__attribute__ ((__nothrow__));
extern int rpmatch (__const char *__response) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
# 832 "/usr/include/stdlib.h" 3 4
extern int posix_openpt (int __oflag) ;
# 867 "/usr/include/stdlib.h" 3 4
extern int getloadavg (double __loadavg[], int __nelem)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 883 "/usr/include/stdlib.h" 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.headers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.headers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.headers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdlib.h>
#include <ctype.h>
#define ISLOWER(c) ('a' <= (c) && (c) <= 'z')
#define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c))
#define XOR(e, f) (((e) && !(f)) || (!(e) && (f)))
int main() {
int i;
for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2);
exit(0);
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.headers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.headers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.headers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.headers/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Executing: /tmp/petsc-5zlcDX/config.headers/conftest
sh: /tmp/petsc-5zlcDX/config.headers/conftest
Executing: /tmp/petsc-5zlcDX/config.headers/conftest
sh:
Defined "STDC_HEADERS" to "1"
================================================================================
TEST checkStat from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:138)
TESTING: checkStat from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:138)
Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/sys/types.h" 1 3 4
# 27 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 28 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 32 "/usr/include/sys/types.h" 2 3 4
typedef __u_char u_char;
typedef __u_short u_short;
typedef __u_int u_int;
typedef __u_long u_long;
typedef __quad_t quad_t;
typedef __u_quad_t u_quad_t;
typedef __fsid_t fsid_t;
typedef __loff_t loff_t;
typedef __ino_t ino_t;
# 62 "/usr/include/sys/types.h" 3 4
typedef __dev_t dev_t;
typedef __gid_t gid_t;
typedef __mode_t mode_t;
typedef __nlink_t nlink_t;
typedef __uid_t uid_t;
typedef __off_t off_t;
# 100 "/usr/include/sys/types.h" 3 4
typedef __pid_t pid_t;
typedef __id_t id_t;
typedef __ssize_t ssize_t;
typedef __daddr_t daddr_t;
typedef __caddr_t caddr_t;
typedef __key_t key_t;
# 133 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/time.h" 1 3 4
# 75 "/usr/include/time.h" 3 4
typedef __time_t time_t;
# 93 "/usr/include/time.h" 3 4
typedef __clockid_t clockid_t;
# 105 "/usr/include/time.h" 3 4
typedef __timer_t timer_t;
# 134 "/usr/include/sys/types.h" 2 3 4
# 147 "/usr/include/sys/types.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 148 "/usr/include/sys/types.h" 2 3 4
typedef unsigned long int ulong;
typedef unsigned short int ushort;
typedef unsigned int uint;
# 195 "/usr/include/sys/types.h" 3 4
typedef int int8_t __attribute__ ((__mode__ (__QI__)));
typedef int int16_t __attribute__ ((__mode__ (__HI__)));
typedef int int32_t __attribute__ ((__mode__ (__SI__)));
typedef int int64_t __attribute__ ((__mode__ (__DI__)));
typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__)));
typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__)));
typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__)));
typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__)));
typedef int register_t __attribute__ ((__mode__ (__word__)));
# 217 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/endian.h" 1 3 4
# 37 "/usr/include/endian.h" 3 4
# 1 "/usr/include/bits/endian.h" 1 3 4
# 38 "/usr/include/endian.h" 2 3 4
# 218 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/select.h" 1 3 4
# 31 "/usr/include/sys/select.h" 3 4
# 1 "/usr/include/bits/select.h" 1 3 4
# 32 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/sigset.h" 1 3 4
# 24 "/usr/include/bits/sigset.h" 3 4
typedef int __sig_atomic_t;
typedef struct
{
unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))];
} __sigset_t;
# 35 "/usr/include/sys/select.h" 2 3 4
typedef __sigset_t sigset_t;
# 1 "/usr/include/time.h" 1 3 4
# 121 "/usr/include/time.h" 3 4
struct timespec
{
__time_t tv_sec;
long int tv_nsec;
};
# 45 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/time.h" 1 3 4
# 69 "/usr/include/bits/time.h" 3 4
struct timeval
{
__time_t tv_sec;
__suseconds_t tv_usec;
};
# 47 "/usr/include/sys/select.h" 2 3 4
typedef __suseconds_t suseconds_t;
typedef long int __fd_mask;
# 67 "/usr/include/sys/select.h" 3 4
typedef struct
{
__fd_mask __fds_bits[1024 / (8 * sizeof (__fd_mask))];
} fd_set;
typedef __fd_mask fd_mask;
# 99 "/usr/include/sys/select.h" 3 4
# 109 "/usr/include/sys/select.h" 3 4
extern int select (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
struct timeval *__restrict __timeout);
# 121 "/usr/include/sys/select.h" 3 4
extern int pselect (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
const struct timespec *__restrict __timeout,
const __sigset_t *__restrict __sigmask);
# 221 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/sysmacros.h" 1 3 4
# 30 "/usr/include/sys/sysmacros.h" 3 4
__extension__
extern unsigned int gnu_dev_major (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned int gnu_dev_minor (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned long long int gnu_dev_makedev (unsigned int __major,
unsigned int __minor)
__attribute__ ((__nothrow__));
# 224 "/usr/include/sys/types.h" 2 3 4
# 235 "/usr/include/sys/types.h" 3 4
typedef __blkcnt_t blkcnt_t;
typedef __fsblkcnt_t fsblkcnt_t;
typedef __fsfilcnt_t fsfilcnt_t;
# 270 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/pthreadtypes.h" 1 3 4
# 23 "/usr/include/bits/pthreadtypes.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 24 "/usr/include/bits/pthreadtypes.h" 2 3 4
# 50 "/usr/include/bits/pthreadtypes.h" 3 4
typedef unsigned long int pthread_t;
typedef union
{
char __size[36];
long int __align;
} pthread_attr_t;
# 67 "/usr/include/bits/pthreadtypes.h" 3 4
typedef struct __pthread_internal_slist
{
struct __pthread_internal_slist *__next;
} __pthread_slist_t;
typedef union
{
struct __pthread_mutex_s
{
int __lock;
unsigned int __count;
int __owner;
int __kind;
unsigned int __nusers;
__extension__ union
{
int __spins;
__pthread_slist_t __list;
};
} __data;
char __size[24];
long int __align;
} pthread_mutex_t;
typedef union
{
char __size[4];
int __align;
} pthread_mutexattr_t;
typedef union
{
struct
{
int __lock;
unsigned int __futex;
__extension__ unsigned long long int __total_seq;
__extension__ unsigned long long int __wakeup_seq;
__extension__ unsigned long long int __woken_seq;
void *__mutex;
unsigned int __nwaiters;
unsigned int __broadcast_seq;
} __data;
char __size[48];
__extension__ long long int __align;
} pthread_cond_t;
typedef union
{
char __size[4];
int __align;
} pthread_condattr_t;
typedef unsigned int pthread_key_t;
typedef int pthread_once_t;
typedef union
{
# 170 "/usr/include/bits/pthreadtypes.h" 3 4
struct
{
int __lock;
unsigned int __nr_readers;
unsigned int __readers_wakeup;
unsigned int __writer_wakeup;
unsigned int __nr_readers_queued;
unsigned int __nr_writers_queued;
unsigned char __flags;
unsigned char __shared;
unsigned char __pad1;
unsigned char __pad2;
int __writer;
} __data;
char __size[32];
long int __align;
} pthread_rwlock_t;
typedef union
{
char __size[8];
long int __align;
} pthread_rwlockattr_t;
typedef volatile int pthread_spinlock_t;
typedef union
{
char __size[20];
long int __align;
} pthread_barrier_t;
typedef union
{
char __size[4];
int __align;
} pthread_barrierattr_t;
# 271 "/usr/include/sys/types.h" 2 3 4
# 5 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/sys/stat.h" 1 3 4
# 39 "/usr/include/sys/stat.h" 3 4
# 1 "/usr/include/time.h" 1 3 4
# 40 "/usr/include/sys/stat.h" 2 3 4
# 105 "/usr/include/sys/stat.h" 3 4
# 1 "/usr/include/bits/stat.h" 1 3 4
# 43 "/usr/include/bits/stat.h" 3 4
struct stat
{
__dev_t st_dev;
unsigned short int __pad1;
__ino_t st_ino;
__mode_t st_mode;
__nlink_t st_nlink;
__uid_t st_uid;
__gid_t st_gid;
__dev_t st_rdev;
unsigned short int __pad2;
__off_t st_size;
__blksize_t st_blksize;
__blkcnt_t st_blocks;
# 88 "/usr/include/bits/stat.h" 3 4
struct timespec st_atim;
struct timespec st_mtim;
struct timespec st_ctim;
# 106 "/usr/include/bits/stat.h" 3 4
unsigned long int __unused4;
unsigned long int __unused5;
};
# 108 "/usr/include/sys/stat.h" 2 3 4
# 209 "/usr/include/sys/stat.h" 3 4
extern int stat (__const char *__restrict __file,
struct stat *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int fstat (int __fd, struct stat *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2)));
# 261 "/usr/include/sys/stat.h" 3 4
extern int lstat (__const char *__restrict __file,
struct stat *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
# 282 "/usr/include/sys/stat.h" 3 4
extern int chmod (__const char *__file, __mode_t __mode)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int lchmod (__const char *__file, __mode_t __mode)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int fchmod (int __fd, __mode_t __mode) __attribute__ ((__nothrow__));
# 309 "/usr/include/sys/stat.h" 3 4
extern __mode_t umask (__mode_t __mask) __attribute__ ((__nothrow__));
# 318 "/usr/include/sys/stat.h" 3 4
extern int mkdir (__const char *__path, __mode_t __mode)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 333 "/usr/include/sys/stat.h" 3 4
extern int mknod (__const char *__path, __mode_t __mode, __dev_t __dev)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 347 "/usr/include/sys/stat.h" 3 4
extern int mkfifo (__const char *__path, __mode_t __mode)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 397 "/usr/include/sys/stat.h" 3 4
extern int __fxstat (int __ver, int __fildes, struct stat *__stat_buf)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3)));
extern int __xstat (int __ver, __const char *__filename,
struct stat *__stat_buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3)));
extern int __lxstat (int __ver, __const char *__filename,
struct stat *__stat_buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3)));
extern int __fxstatat (int __ver, int __fildes, __const char *__filename,
struct stat *__stat_buf, int __flag)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4)));
# 440 "/usr/include/sys/stat.h" 3 4
extern int __xmknod (int __ver, __const char *__path, __mode_t __mode,
__dev_t *__dev) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 4)));
extern int __xmknodat (int __ver, int __fd, __const char *__path,
__mode_t __mode, __dev_t *__dev)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 5)));
# 532 "/usr/include/sys/stat.h" 3 4
# 6 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
================================================================================
TEST checkSysWait from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:173)
TESTING: checkSysWait from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:173)
Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.headers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.headers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.headers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#include <sys/wait.h>
#ifndef WEXITSTATUS
#define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8)
#endif
#ifndef WIFEXITED
#define WIFEXITED(stat_val) (((stat_val) & 255) == 0)
#endif
int main() {
int s;
wait (&s);
s = WIFEXITED (s) ? WEXITSTATUS (s) : 1;
;
return 0;
}
Defined "HAVE_SYS_WAIT_H" to "1"
================================================================================
TEST checkTime from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:195)
TESTING: checkTime from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:195)
Checks if you can safely include both <sys/time.h> and <time.h>, and if so defines TIME_WITH_SYS_TIME
Checking for header: time.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/time.h" 1 3 4
# 29 "/usr/include/time.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 30 "/usr/include/time.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 40 "/usr/include/time.h" 2 3 4
# 1 "/usr/include/bits/time.h" 1 3 4
# 44 "/usr/include/time.h" 2 3 4
# 57 "/usr/include/time.h" 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 58 "/usr/include/time.h" 2 3 4
typedef __clock_t clock_t;
# 75 "/usr/include/time.h" 3 4
typedef __time_t time_t;
# 93 "/usr/include/time.h" 3 4
typedef __clockid_t clockid_t;
# 105 "/usr/include/time.h" 3 4
typedef __timer_t timer_t;
# 121 "/usr/include/time.h" 3 4
struct timespec
{
__time_t tv_sec;
long int tv_nsec;
};
struct tm
{
int tm_sec;
int tm_min;
int tm_hour;
int tm_mday;
int tm_mon;
int tm_year;
int tm_wday;
int tm_yday;
int tm_isdst;
long int tm_gmtoff;
__const char *tm_zone;
};
struct itimerspec
{
struct timespec it_interval;
struct timespec it_value;
};
struct sigevent;
typedef __pid_t pid_t;
extern clock_t clock (void) __attribute__ ((__nothrow__));
extern time_t time (time_t *__timer) __attribute__ ((__nothrow__));
extern double difftime (time_t __time1, time_t __time0)
__attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__));
extern size_t strftime (char *__restrict __s, size_t __maxsize,
__const char *__restrict __format,
__const struct tm *__restrict __tp) __attribute__ ((__nothrow__));
# 229 "/usr/include/time.h" 3 4
extern struct tm *gmtime (__const time_t *__timer) __attribute__ ((__nothrow__));
extern struct tm *localtime (__const time_t *__timer) __attribute__ ((__nothrow__));
extern struct tm *gmtime_r (__const time_t *__restrict __timer,
struct tm *__restrict __tp) __attribute__ ((__nothrow__));
extern struct tm *localtime_r (__const time_t *__restrict __timer,
struct tm *__restrict __tp) __attribute__ ((__nothrow__));
extern char *asctime (__const struct tm *__tp) __attribute__ ((__nothrow__));
extern char *ctime (__const time_t *__timer) __attribute__ ((__nothrow__));
extern char *asctime_r (__const struct tm *__restrict __tp,
char *__restrict __buf) __attribute__ ((__nothrow__));
extern char *ctime_r (__const time_t *__restrict __timer,
char *__restrict __buf) __attribute__ ((__nothrow__));
extern char *__tzname[2];
extern int __daylight;
extern long int __timezone;
extern char *tzname[2];
extern void tzset (void) __attribute__ ((__nothrow__));
extern int daylight;
extern long int timezone;
extern int stime (__const time_t *__when) __attribute__ ((__nothrow__));
# 312 "/usr/include/time.h" 3 4
extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__));
extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__));
extern int dysize (int __year) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
# 327 "/usr/include/time.h" 3 4
extern int nanosleep (__const struct timespec *__requested_time,
struct timespec *__remaining);
extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__));
extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__));
extern int clock_settime (clockid_t __clock_id, __const struct timespec *__tp)
__attribute__ ((__nothrow__));
extern int clock_nanosleep (clockid_t __clock_id, int __flags,
__const struct timespec *__req,
struct timespec *__rem);
extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__));
extern int timer_create (clockid_t __clock_id,
struct sigevent *__restrict __evp,
timer_t *__restrict __timerid) __attribute__ ((__nothrow__));
extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__));
extern int timer_settime (timer_t __timerid, int __flags,
__const struct itimerspec *__restrict __value,
struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__));
extern int timer_gettime (timer_t __timerid, struct itimerspec *__value)
__attribute__ ((__nothrow__));
extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__));
# 416 "/usr/include/time.h" 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_TIME_H" to "1"
Checking for header: sys/time.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/sys/time.h" 1 3 4
# 23 "/usr/include/sys/time.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 24 "/usr/include/sys/time.h" 2 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 26 "/usr/include/sys/time.h" 2 3 4
# 1 "/usr/include/time.h" 1 3 4
# 75 "/usr/include/time.h" 3 4
typedef __time_t time_t;
# 28 "/usr/include/sys/time.h" 2 3 4
# 1 "/usr/include/bits/time.h" 1 3 4
# 69 "/usr/include/bits/time.h" 3 4
struct timeval
{
__time_t tv_sec;
__suseconds_t tv_usec;
};
# 30 "/usr/include/sys/time.h" 2 3 4
# 1 "/usr/include/sys/select.h" 1 3 4
# 31 "/usr/include/sys/select.h" 3 4
# 1 "/usr/include/bits/select.h" 1 3 4
# 32 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/sigset.h" 1 3 4
# 24 "/usr/include/bits/sigset.h" 3 4
typedef int __sig_atomic_t;
typedef struct
{
unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))];
} __sigset_t;
# 35 "/usr/include/sys/select.h" 2 3 4
typedef __sigset_t sigset_t;
# 1 "/usr/include/time.h" 1 3 4
# 121 "/usr/include/time.h" 3 4
struct timespec
{
__time_t tv_sec;
long int tv_nsec;
};
# 45 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/time.h" 1 3 4
# 47 "/usr/include/sys/select.h" 2 3 4
typedef __suseconds_t suseconds_t;
typedef long int __fd_mask;
# 67 "/usr/include/sys/select.h" 3 4
typedef struct
{
__fd_mask __fds_bits[1024 / (8 * sizeof (__fd_mask))];
} fd_set;
typedef __fd_mask fd_mask;
# 99 "/usr/include/sys/select.h" 3 4
# 109 "/usr/include/sys/select.h" 3 4
extern int select (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
struct timeval *__restrict __timeout);
# 121 "/usr/include/sys/select.h" 3 4
extern int pselect (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
const struct timespec *__restrict __timeout,
const __sigset_t *__restrict __sigmask);
# 32 "/usr/include/sys/time.h" 2 3 4
# 57 "/usr/include/sys/time.h" 3 4
struct timezone
{
int tz_minuteswest;
int tz_dsttime;
};
typedef struct timezone *__restrict __timezone_ptr_t;
# 73 "/usr/include/sys/time.h" 3 4
extern int gettimeofday (struct timeval *__restrict __tv,
__timezone_ptr_t __tz) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int settimeofday (__const struct timeval *__tv,
__const struct timezone *__tz)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int adjtime (__const struct timeval *__delta,
struct timeval *__olddelta) __attribute__ ((__nothrow__));
enum __itimer_which
{
ITIMER_REAL = 0,
ITIMER_VIRTUAL = 1,
ITIMER_PROF = 2
};
struct itimerval
{
struct timeval it_interval;
struct timeval it_value;
};
typedef int __itimer_which_t;
extern int getitimer (__itimer_which_t __which,
struct itimerval *__value) __attribute__ ((__nothrow__));
extern int setitimer (__itimer_which_t __which,
__const struct itimerval *__restrict __new,
struct itimerval *__restrict __old) __attribute__ ((__nothrow__));
extern int utimes (__const char *__file, __const struct timeval __tvp[2])
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int lutimes (__const char *__file, __const struct timeval __tvp[2])
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int futimes (int __fd, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__));
# 191 "/usr/include/sys/time.h" 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_SYS_TIME_H" to "1"
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.headers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.headers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.headers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#include <sys/time.h>
#include <time.h>
int main() {
struct tm *tp = 0;
if (tp);
;
return 0;
}
Defined "TIME_WITH_SYS_TIME" to "1"
================================================================================
TEST checkMath from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:203)
TESTING: checkMath from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:203)
Checks for the math headers and defines
Checking for header: math.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/math.h" 1 3 4
# 28 "/usr/include/math.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 29 "/usr/include/math.h" 2 3 4
# 1 "/usr/include/bits/huge_val.h" 1 3 4
# 35 "/usr/include/math.h" 2 3 4
# 47 "/usr/include/math.h" 3 4
# 1 "/usr/include/bits/mathdef.h" 1 3 4
# 48 "/usr/include/math.h" 2 3 4
# 71 "/usr/include/math.h" 3 4
# 1 "/usr/include/bits/mathcalls.h" 1 3 4
# 53 "/usr/include/bits/mathcalls.h" 3 4
extern double acos (double __x) __attribute__ ((__nothrow__)); extern double __acos (double __x) __attribute__ ((__nothrow__));
extern double asin (double __x) __attribute__ ((__nothrow__)); extern double __asin (double __x) __attribute__ ((__nothrow__));
extern double atan (double __x) __attribute__ ((__nothrow__)); extern double __atan (double __x) __attribute__ ((__nothrow__));
extern double atan2 (double __y, double __x) __attribute__ ((__nothrow__)); extern double __atan2 (double __y, double __x) __attribute__ ((__nothrow__));
extern double cos (double __x) __attribute__ ((__nothrow__)); extern double __cos (double __x) __attribute__ ((__nothrow__));
extern double sin (double __x) __attribute__ ((__nothrow__)); extern double __sin (double __x) __attribute__ ((__nothrow__));
extern double tan (double __x) __attribute__ ((__nothrow__)); extern double __tan (double __x) __attribute__ ((__nothrow__));
extern double cosh (double __x) __attribute__ ((__nothrow__)); extern double __cosh (double __x) __attribute__ ((__nothrow__));
extern double sinh (double __x) __attribute__ ((__nothrow__)); extern double __sinh (double __x) __attribute__ ((__nothrow__));
extern double tanh (double __x) __attribute__ ((__nothrow__)); extern double __tanh (double __x) __attribute__ ((__nothrow__));
# 87 "/usr/include/bits/mathcalls.h" 3 4
extern double acosh (double __x) __attribute__ ((__nothrow__)); extern double __acosh (double __x) __attribute__ ((__nothrow__));
extern double asinh (double __x) __attribute__ ((__nothrow__)); extern double __asinh (double __x) __attribute__ ((__nothrow__));
extern double atanh (double __x) __attribute__ ((__nothrow__)); extern double __atanh (double __x) __attribute__ ((__nothrow__));
extern double exp (double __x) __attribute__ ((__nothrow__)); extern double __exp (double __x) __attribute__ ((__nothrow__));
extern double frexp (double __x, int *__exponent) __attribute__ ((__nothrow__)); extern double __frexp (double __x, int *__exponent) __attribute__ ((__nothrow__));
extern double ldexp (double __x, int __exponent) __attribute__ ((__nothrow__)); extern double __ldexp (double __x, int __exponent) __attribute__ ((__nothrow__));
extern double log (double __x) __attribute__ ((__nothrow__)); extern double __log (double __x) __attribute__ ((__nothrow__));
extern double log10 (double __x) __attribute__ ((__nothrow__)); extern double __log10 (double __x) __attribute__ ((__nothrow__));
extern double modf (double __x, double *__iptr) __attribute__ ((__nothrow__)); extern double __modf (double __x, double *__iptr) __attribute__ ((__nothrow__));
# 127 "/usr/include/bits/mathcalls.h" 3 4
extern double expm1 (double __x) __attribute__ ((__nothrow__)); extern double __expm1 (double __x) __attribute__ ((__nothrow__));
extern double log1p (double __x) __attribute__ ((__nothrow__)); extern double __log1p (double __x) __attribute__ ((__nothrow__));
extern double logb (double __x) __attribute__ ((__nothrow__)); extern double __logb (double __x) __attribute__ ((__nothrow__));
# 152 "/usr/include/bits/mathcalls.h" 3 4
extern double pow (double __x, double __y) __attribute__ ((__nothrow__)); extern double __pow (double __x, double __y) __attribute__ ((__nothrow__));
extern double sqrt (double __x) __attribute__ ((__nothrow__)); extern double __sqrt (double __x) __attribute__ ((__nothrow__));
extern double hypot (double __x, double __y) __attribute__ ((__nothrow__)); extern double __hypot (double __x, double __y) __attribute__ ((__nothrow__));
extern double cbrt (double __x) __attribute__ ((__nothrow__)); extern double __cbrt (double __x) __attribute__ ((__nothrow__));
extern double ceil (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __ceil (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern double fabs (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __fabs (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern double floor (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __floor (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern double fmod (double __x, double __y) __attribute__ ((__nothrow__)); extern double __fmod (double __x, double __y) __attribute__ ((__nothrow__));
extern int __isinf (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern int __finite (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern int isinf (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern int finite (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern double drem (double __x, double __y) __attribute__ ((__nothrow__)); extern double __drem (double __x, double __y) __attribute__ ((__nothrow__));
extern double significand (double __x) __attribute__ ((__nothrow__)); extern double __significand (double __x) __attribute__ ((__nothrow__));
extern double copysign (double __x, double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __copysign (double __x, double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
# 231 "/usr/include/bits/mathcalls.h" 3 4
extern int __isnan (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern int isnan (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern double j0 (double) __attribute__ ((__nothrow__)); extern double __j0 (double) __attribute__ ((__nothrow__));
extern double j1 (double) __attribute__ ((__nothrow__)); extern double __j1 (double) __attribute__ ((__nothrow__));
extern double jn (int, double) __attribute__ ((__nothrow__)); extern double __jn (int, double) __attribute__ ((__nothrow__));
extern double y0 (double) __attribute__ ((__nothrow__)); extern double __y0 (double) __attribute__ ((__nothrow__));
extern double y1 (double) __attribute__ ((__nothrow__)); extern double __y1 (double) __attribute__ ((__nothrow__));
extern double yn (int, double) __attribute__ ((__nothrow__)); extern double __yn (int, double) __attribute__ ((__nothrow__));
extern double erf (double) __attribute__ ((__nothrow__)); extern double __erf (double) __attribute__ ((__nothrow__));
extern double erfc (double) __attribute__ ((__nothrow__)); extern double __erfc (double) __attribute__ ((__nothrow__));
extern double lgamma (double) __attribute__ ((__nothrow__)); extern double __lgamma (double) __attribute__ ((__nothrow__));
# 265 "/usr/include/bits/mathcalls.h" 3 4
extern double gamma (double) __attribute__ ((__nothrow__)); extern double __gamma (double) __attribute__ ((__nothrow__));
extern double lgamma_r (double, int *__signgamp) __attribute__ ((__nothrow__)); extern double __lgamma_r (double, int *__signgamp) __attribute__ ((__nothrow__));
extern double rint (double __x) __attribute__ ((__nothrow__)); extern double __rint (double __x) __attribute__ ((__nothrow__));
extern double nextafter (double __x, double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __nextafter (double __x, double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern double remainder (double __x, double __y) __attribute__ ((__nothrow__)); extern double __remainder (double __x, double __y) __attribute__ ((__nothrow__));
extern double scalbn (double __x, int __n) __attribute__ ((__nothrow__)); extern double __scalbn (double __x, int __n) __attribute__ ((__nothrow__));
extern int ilogb (double __x) __attribute__ ((__nothrow__)); extern int __ilogb (double __x) __attribute__ ((__nothrow__));
# 359 "/usr/include/bits/mathcalls.h" 3 4
extern double scalb (double __x, double __n) __attribute__ ((__nothrow__)); extern double __scalb (double __x, double __n) __attribute__ ((__nothrow__));
# 72 "/usr/include/math.h" 2 3 4
# 94 "/usr/include/math.h" 3 4
# 1 "/usr/include/bits/mathcalls.h" 1 3 4
# 53 "/usr/include/bits/mathcalls.h" 3 4
extern float acosf (float __x) __attribute__ ((__nothrow__)); extern float __acosf (float __x) __attribute__ ((__nothrow__));
extern float asinf (float __x) __attribute__ ((__nothrow__)); extern float __asinf (float __x) __attribute__ ((__nothrow__));
extern float atanf (float __x) __attribute__ ((__nothrow__)); extern float __atanf (float __x) __attribute__ ((__nothrow__));
extern float atan2f (float __y, float __x) __attribute__ ((__nothrow__)); extern float __atan2f (float __y, float __x) __attribute__ ((__nothrow__));
extern float cosf (float __x) __attribute__ ((__nothrow__)); extern float __cosf (float __x) __attribute__ ((__nothrow__));
extern float sinf (float __x) __attribute__ ((__nothrow__)); extern float __sinf (float __x) __attribute__ ((__nothrow__));
extern float tanf (float __x) __attribute__ ((__nothrow__)); extern float __tanf (float __x) __attribute__ ((__nothrow__));
extern float coshf (float __x) __attribute__ ((__nothrow__)); extern float __coshf (float __x) __attribute__ ((__nothrow__));
extern float sinhf (float __x) __attribute__ ((__nothrow__)); extern float __sinhf (float __x) __attribute__ ((__nothrow__));
extern float tanhf (float __x) __attribute__ ((__nothrow__)); extern float __tanhf (float __x) __attribute__ ((__nothrow__));
# 87 "/usr/include/bits/mathcalls.h" 3 4
extern float acoshf (float __x) __attribute__ ((__nothrow__)); extern float __acoshf (float __x) __attribute__ ((__nothrow__));
extern float asinhf (float __x) __attribute__ ((__nothrow__)); extern float __asinhf (float __x) __attribute__ ((__nothrow__));
extern float atanhf (float __x) __attribute__ ((__nothrow__)); extern float __atanhf (float __x) __attribute__ ((__nothrow__));
extern float expf (float __x) __attribute__ ((__nothrow__)); extern float __expf (float __x) __attribute__ ((__nothrow__));
extern float frexpf (float __x, int *__exponent) __attribute__ ((__nothrow__)); extern float __frexpf (float __x, int *__exponent) __attribute__ ((__nothrow__));
extern float ldexpf (float __x, int __exponent) __attribute__ ((__nothrow__)); extern float __ldexpf (float __x, int __exponent) __attribute__ ((__nothrow__));
extern float logf (float __x) __attribute__ ((__nothrow__)); extern float __logf (float __x) __attribute__ ((__nothrow__));
extern float log10f (float __x) __attribute__ ((__nothrow__)); extern float __log10f (float __x) __attribute__ ((__nothrow__));
extern float modff (float __x, float *__iptr) __attribute__ ((__nothrow__)); extern float __modff (float __x, float *__iptr) __attribute__ ((__nothrow__));
# 127 "/usr/include/bits/mathcalls.h" 3 4
extern float expm1f (float __x) __attribute__ ((__nothrow__)); extern float __expm1f (float __x) __attribute__ ((__nothrow__));
extern float log1pf (float __x) __attribute__ ((__nothrow__)); extern float __log1pf (float __x) __attribute__ ((__nothrow__));
extern float logbf (float __x) __attribute__ ((__nothrow__)); extern float __logbf (float __x) __attribute__ ((__nothrow__));
# 152 "/usr/include/bits/mathcalls.h" 3 4
extern float powf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __powf (float __x, float __y) __attribute__ ((__nothrow__));
extern float sqrtf (float __x) __attribute__ ((__nothrow__)); extern float __sqrtf (float __x) __attribute__ ((__nothrow__));
extern float hypotf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __hypotf (float __x, float __y) __attribute__ ((__nothrow__));
extern float cbrtf (float __x) __attribute__ ((__nothrow__)); extern float __cbrtf (float __x) __attribute__ ((__nothrow__));
extern float ceilf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __ceilf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern float fabsf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __fabsf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern float floorf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __floorf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern float fmodf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __fmodf (float __x, float __y) __attribute__ ((__nothrow__));
extern int __isinff (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern int __finitef (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern int isinff (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern int finitef (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern float dremf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __dremf (float __x, float __y) __attribute__ ((__nothrow__));
extern float significandf (float __x) __attribute__ ((__nothrow__)); extern float __significandf (float __x) __attribute__ ((__nothrow__));
extern float copysignf (float __x, float __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __copysignf (float __x, float __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
# 231 "/usr/include/bits/mathcalls.h" 3 4
extern int __isnanf (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern int isnanf (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern float j0f (float) __attribute__ ((__nothrow__)); extern float __j0f (float) __attribute__ ((__nothrow__));
extern float j1f (float) __attribute__ ((__nothrow__)); extern float __j1f (float) __attribute__ ((__nothrow__));
extern float jnf (int, float) __attribute__ ((__nothrow__)); extern float __jnf (int, float) __attribute__ ((__nothrow__));
extern float y0f (float) __attribute__ ((__nothrow__)); extern float __y0f (float) __attribute__ ((__nothrow__));
extern float y1f (float) __attribute__ ((__nothrow__)); extern float __y1f (float) __attribute__ ((__nothrow__));
extern float ynf (int, float) __attribute__ ((__nothrow__)); extern float __ynf (int, float) __attribute__ ((__nothrow__));
extern float erff (float) __attribute__ ((__nothrow__)); extern float __erff (float) __attribute__ ((__nothrow__));
extern float erfcf (float) __attribute__ ((__nothrow__)); extern float __erfcf (float) __attribute__ ((__nothrow__));
extern float lgammaf (float) __attribute__ ((__nothrow__)); extern float __lgammaf (float) __attribute__ ((__nothrow__));
# 265 "/usr/include/bits/mathcalls.h" 3 4
extern float gammaf (float) __attribute__ ((__nothrow__)); extern float __gammaf (float) __attribute__ ((__nothrow__));
extern float lgammaf_r (float, int *__signgamp) __attribute__ ((__nothrow__)); extern float __lgammaf_r (float, int *__signgamp) __attribute__ ((__nothrow__));
extern float rintf (float __x) __attribute__ ((__nothrow__)); extern float __rintf (float __x) __attribute__ ((__nothrow__));
extern float nextafterf (float __x, float __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __nextafterf (float __x, float __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern float remainderf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __remainderf (float __x, float __y) __attribute__ ((__nothrow__));
extern float scalbnf (float __x, int __n) __attribute__ ((__nothrow__)); extern float __scalbnf (float __x, int __n) __attribute__ ((__nothrow__));
extern int ilogbf (float __x) __attribute__ ((__nothrow__)); extern int __ilogbf (float __x) __attribute__ ((__nothrow__));
# 359 "/usr/include/bits/mathcalls.h" 3 4
extern float scalbf (float __x, float __n) __attribute__ ((__nothrow__)); extern float __scalbf (float __x, float __n) __attribute__ ((__nothrow__));
# 95 "/usr/include/math.h" 2 3 4
# 141 "/usr/include/math.h" 3 4
# 1 "/usr/include/bits/mathcalls.h" 1 3 4
# 53 "/usr/include/bits/mathcalls.h" 3 4
extern long double acosl (long double __x) __attribute__ ((__nothrow__)); extern long double __acosl (long double __x) __attribute__ ((__nothrow__));
extern long double asinl (long double __x) __attribute__ ((__nothrow__)); extern long double __asinl (long double __x) __attribute__ ((__nothrow__));
extern long double atanl (long double __x) __attribute__ ((__nothrow__)); extern long double __atanl (long double __x) __attribute__ ((__nothrow__));
extern long double atan2l (long double __y, long double __x) __attribute__ ((__nothrow__)); extern long double __atan2l (long double __y, long double __x) __attribute__ ((__nothrow__));
extern long double cosl (long double __x) __attribute__ ((__nothrow__)); extern long double __cosl (long double __x) __attribute__ ((__nothrow__));
extern long double sinl (long double __x) __attribute__ ((__nothrow__)); extern long double __sinl (long double __x) __attribute__ ((__nothrow__));
extern long double tanl (long double __x) __attribute__ ((__nothrow__)); extern long double __tanl (long double __x) __attribute__ ((__nothrow__));
extern long double coshl (long double __x) __attribute__ ((__nothrow__)); extern long double __coshl (long double __x) __attribute__ ((__nothrow__));
extern long double sinhl (long double __x) __attribute__ ((__nothrow__)); extern long double __sinhl (long double __x) __attribute__ ((__nothrow__));
extern long double tanhl (long double __x) __attribute__ ((__nothrow__)); extern long double __tanhl (long double __x) __attribute__ ((__nothrow__));
# 87 "/usr/include/bits/mathcalls.h" 3 4
extern long double acoshl (long double __x) __attribute__ ((__nothrow__)); extern long double __acoshl (long double __x) __attribute__ ((__nothrow__));
extern long double asinhl (long double __x) __attribute__ ((__nothrow__)); extern long double __asinhl (long double __x) __attribute__ ((__nothrow__));
extern long double atanhl (long double __x) __attribute__ ((__nothrow__)); extern long double __atanhl (long double __x) __attribute__ ((__nothrow__));
extern long double expl (long double __x) __attribute__ ((__nothrow__)); extern long double __expl (long double __x) __attribute__ ((__nothrow__));
extern long double frexpl (long double __x, int *__exponent) __attribute__ ((__nothrow__)); extern long double __frexpl (long double __x, int *__exponent) __attribute__ ((__nothrow__));
extern long double ldexpl (long double __x, int __exponent) __attribute__ ((__nothrow__)); extern long double __ldexpl (long double __x, int __exponent) __attribute__ ((__nothrow__));
extern long double logl (long double __x) __attribute__ ((__nothrow__)); extern long double __logl (long double __x) __attribute__ ((__nothrow__));
extern long double log10l (long double __x) __attribute__ ((__nothrow__)); extern long double __log10l (long double __x) __attribute__ ((__nothrow__));
extern long double modfl (long double __x, long double *__iptr) __attribute__ ((__nothrow__)); extern long double __modfl (long double __x, long double *__iptr) __attribute__ ((__nothrow__));
# 127 "/usr/include/bits/mathcalls.h" 3 4
extern long double expm1l (long double __x) __attribute__ ((__nothrow__)); extern long double __expm1l (long double __x) __attribute__ ((__nothrow__));
extern long double log1pl (long double __x) __attribute__ ((__nothrow__)); extern long double __log1pl (long double __x) __attribute__ ((__nothrow__));
extern long double logbl (long double __x) __attribute__ ((__nothrow__)); extern long double __logbl (long double __x) __attribute__ ((__nothrow__));
# 152 "/usr/include/bits/mathcalls.h" 3 4
extern long double powl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __powl (long double __x, long double __y) __attribute__ ((__nothrow__));
extern long double sqrtl (long double __x) __attribute__ ((__nothrow__)); extern long double __sqrtl (long double __x) __attribute__ ((__nothrow__));
extern long double hypotl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __hypotl (long double __x, long double __y) __attribute__ ((__nothrow__));
extern long double cbrtl (long double __x) __attribute__ ((__nothrow__)); extern long double __cbrtl (long double __x) __attribute__ ((__nothrow__));
extern long double ceill (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __ceill (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern long double fabsl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __fabsl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern long double floorl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __floorl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern long double fmodl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __fmodl (long double __x, long double __y) __attribute__ ((__nothrow__));
extern int __isinfl (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern int __finitel (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern int isinfl (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern int finitel (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern long double dreml (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __dreml (long double __x, long double __y) __attribute__ ((__nothrow__));
extern long double significandl (long double __x) __attribute__ ((__nothrow__)); extern long double __significandl (long double __x) __attribute__ ((__nothrow__));
extern long double copysignl (long double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __copysignl (long double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
# 231 "/usr/include/bits/mathcalls.h" 3 4
extern int __isnanl (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern int isnanl (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern long double j0l (long double) __attribute__ ((__nothrow__)); extern long double __j0l (long double) __attribute__ ((__nothrow__));
extern long double j1l (long double) __attribute__ ((__nothrow__)); extern long double __j1l (long double) __attribute__ ((__nothrow__));
extern long double jnl (int, long double) __attribute__ ((__nothrow__)); extern long double __jnl (int, long double) __attribute__ ((__nothrow__));
extern long double y0l (long double) __attribute__ ((__nothrow__)); extern long double __y0l (long double) __attribute__ ((__nothrow__));
extern long double y1l (long double) __attribute__ ((__nothrow__)); extern long double __y1l (long double) __attribute__ ((__nothrow__));
extern long double ynl (int, long double) __attribute__ ((__nothrow__)); extern long double __ynl (int, long double) __attribute__ ((__nothrow__));
extern long double erfl (long double) __attribute__ ((__nothrow__)); extern long double __erfl (long double) __attribute__ ((__nothrow__));
extern long double erfcl (long double) __attribute__ ((__nothrow__)); extern long double __erfcl (long double) __attribute__ ((__nothrow__));
extern long double lgammal (long double) __attribute__ ((__nothrow__)); extern long double __lgammal (long double) __attribute__ ((__nothrow__));
# 265 "/usr/include/bits/mathcalls.h" 3 4
extern long double gammal (long double) __attribute__ ((__nothrow__)); extern long double __gammal (long double) __attribute__ ((__nothrow__));
extern long double lgammal_r (long double, int *__signgamp) __attribute__ ((__nothrow__)); extern long double __lgammal_r (long double, int *__signgamp) __attribute__ ((__nothrow__));
extern long double rintl (long double __x) __attribute__ ((__nothrow__)); extern long double __rintl (long double __x) __attribute__ ((__nothrow__));
extern long double nextafterl (long double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __nextafterl (long double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern long double remainderl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __remainderl (long double __x, long double __y) __attribute__ ((__nothrow__));
extern long double scalbnl (long double __x, int __n) __attribute__ ((__nothrow__)); extern long double __scalbnl (long double __x, int __n) __attribute__ ((__nothrow__));
extern int ilogbl (long double __x) __attribute__ ((__nothrow__)); extern int __ilogbl (long double __x) __attribute__ ((__nothrow__));
# 359 "/usr/include/bits/mathcalls.h" 3 4
extern long double scalbl (long double __x, long double __n) __attribute__ ((__nothrow__)); extern long double __scalbl (long double __x, long double __n) __attribute__ ((__nothrow__));
# 142 "/usr/include/math.h" 2 3 4
# 157 "/usr/include/math.h" 3 4
extern int signgam;
# 284 "/usr/include/math.h" 3 4
typedef enum
{
_IEEE_ = -1,
_SVID_,
_XOPEN_,
_POSIX_,
_ISOC_
} _LIB_VERSION_TYPE;
extern _LIB_VERSION_TYPE _LIB_VERSION;
# 309 "/usr/include/math.h" 3 4
struct exception
{
int type;
char *name;
double arg1;
double arg2;
double retval;
};
extern int matherr (struct exception *__exc);
# 465 "/usr/include/math.h" 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_MATH_H" to "1"
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.headers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.headers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.headers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <math.h>
int main() {
double pi = M_PI;
if (pi);
;
return 0;
}
Found math #defines, like M_PI
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: dos.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Possible ERROR while running preprocessor: /tmp/petsc-5zlcDX/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory
compilation terminated.
ret = 256
error message = {/tmp/petsc-5zlcDX/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory
compilation terminated.
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <dos.h>
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: endian.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/endian.h" 1 3 4
# 22 "/usr/include/endian.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 23 "/usr/include/endian.h" 2 3 4
# 37 "/usr/include/endian.h" 3 4
# 1 "/usr/include/bits/endian.h" 1 3 4
# 38 "/usr/include/endian.h" 2 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_ENDIAN_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: fcntl.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/fcntl.h" 1 3 4
# 27 "/usr/include/fcntl.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 28 "/usr/include/fcntl.h" 2 3 4
# 1 "/usr/include/bits/fcntl.h" 1 3 4
# 24 "/usr/include/bits/fcntl.h" 3 4
# 1 "/usr/include/sys/types.h" 1 3 4
# 29 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 32 "/usr/include/sys/types.h" 2 3 4
typedef __u_char u_char;
typedef __u_short u_short;
typedef __u_int u_int;
typedef __u_long u_long;
typedef __quad_t quad_t;
typedef __u_quad_t u_quad_t;
typedef __fsid_t fsid_t;
typedef __loff_t loff_t;
typedef __ino_t ino_t;
# 62 "/usr/include/sys/types.h" 3 4
typedef __dev_t dev_t;
typedef __gid_t gid_t;
typedef __mode_t mode_t;
typedef __nlink_t nlink_t;
typedef __uid_t uid_t;
typedef __off_t off_t;
# 100 "/usr/include/sys/types.h" 3 4
typedef __pid_t pid_t;
typedef __id_t id_t;
typedef __ssize_t ssize_t;
typedef __daddr_t daddr_t;
typedef __caddr_t caddr_t;
typedef __key_t key_t;
# 133 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/time.h" 1 3 4
# 75 "/usr/include/time.h" 3 4
typedef __time_t time_t;
# 93 "/usr/include/time.h" 3 4
typedef __clockid_t clockid_t;
# 105 "/usr/include/time.h" 3 4
typedef __timer_t timer_t;
# 134 "/usr/include/sys/types.h" 2 3 4
# 147 "/usr/include/sys/types.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 148 "/usr/include/sys/types.h" 2 3 4
typedef unsigned long int ulong;
typedef unsigned short int ushort;
typedef unsigned int uint;
# 195 "/usr/include/sys/types.h" 3 4
typedef int int8_t __attribute__ ((__mode__ (__QI__)));
typedef int int16_t __attribute__ ((__mode__ (__HI__)));
typedef int int32_t __attribute__ ((__mode__ (__SI__)));
typedef int int64_t __attribute__ ((__mode__ (__DI__)));
typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__)));
typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__)));
typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__)));
typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__)));
typedef int register_t __attribute__ ((__mode__ (__word__)));
# 217 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/endian.h" 1 3 4
# 37 "/usr/include/endian.h" 3 4
# 1 "/usr/include/bits/endian.h" 1 3 4
# 38 "/usr/include/endian.h" 2 3 4
# 218 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/select.h" 1 3 4
# 31 "/usr/include/sys/select.h" 3 4
# 1 "/usr/include/bits/select.h" 1 3 4
# 32 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/sigset.h" 1 3 4
# 24 "/usr/include/bits/sigset.h" 3 4
typedef int __sig_atomic_t;
typedef struct
{
unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))];
} __sigset_t;
# 35 "/usr/include/sys/select.h" 2 3 4
typedef __sigset_t sigset_t;
# 1 "/usr/include/time.h" 1 3 4
# 121 "/usr/include/time.h" 3 4
struct timespec
{
__time_t tv_sec;
long int tv_nsec;
};
# 45 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/time.h" 1 3 4
# 69 "/usr/include/bits/time.h" 3 4
struct timeval
{
__time_t tv_sec;
__suseconds_t tv_usec;
};
# 47 "/usr/include/sys/select.h" 2 3 4
typedef __suseconds_t suseconds_t;
typedef long int __fd_mask;
# 67 "/usr/include/sys/select.h" 3 4
typedef struct
{
__fd_mask __fds_bits[1024 / (8 * sizeof (__fd_mask))];
} fd_set;
typedef __fd_mask fd_mask;
# 99 "/usr/include/sys/select.h" 3 4
# 109 "/usr/include/sys/select.h" 3 4
extern int select (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
struct timeval *__restrict __timeout);
# 121 "/usr/include/sys/select.h" 3 4
extern int pselect (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
const struct timespec *__restrict __timeout,
const __sigset_t *__restrict __sigmask);
# 221 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/sysmacros.h" 1 3 4
# 30 "/usr/include/sys/sysmacros.h" 3 4
__extension__
extern unsigned int gnu_dev_major (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned int gnu_dev_minor (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned long long int gnu_dev_makedev (unsigned int __major,
unsigned int __minor)
__attribute__ ((__nothrow__));
# 224 "/usr/include/sys/types.h" 2 3 4
# 235 "/usr/include/sys/types.h" 3 4
typedef __blkcnt_t blkcnt_t;
typedef __fsblkcnt_t fsblkcnt_t;
typedef __fsfilcnt_t fsfilcnt_t;
# 270 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/pthreadtypes.h" 1 3 4
# 23 "/usr/include/bits/pthreadtypes.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 24 "/usr/include/bits/pthreadtypes.h" 2 3 4
# 50 "/usr/include/bits/pthreadtypes.h" 3 4
typedef unsigned long int pthread_t;
typedef union
{
char __size[36];
long int __align;
} pthread_attr_t;
# 67 "/usr/include/bits/pthreadtypes.h" 3 4
typedef struct __pthread_internal_slist
{
struct __pthread_internal_slist *__next;
} __pthread_slist_t;
typedef union
{
struct __pthread_mutex_s
{
int __lock;
unsigned int __count;
int __owner;
int __kind;
unsigned int __nusers;
__extension__ union
{
int __spins;
__pthread_slist_t __list;
};
} __data;
char __size[24];
long int __align;
} pthread_mutex_t;
typedef union
{
char __size[4];
int __align;
} pthread_mutexattr_t;
typedef union
{
struct
{
int __lock;
unsigned int __futex;
__extension__ unsigned long long int __total_seq;
__extension__ unsigned long long int __wakeup_seq;
__extension__ unsigned long long int __woken_seq;
void *__mutex;
unsigned int __nwaiters;
unsigned int __broadcast_seq;
} __data;
char __size[48];
__extension__ long long int __align;
} pthread_cond_t;
typedef union
{
char __size[4];
int __align;
} pthread_condattr_t;
typedef unsigned int pthread_key_t;
typedef int pthread_once_t;
typedef union
{
# 170 "/usr/include/bits/pthreadtypes.h" 3 4
struct
{
int __lock;
unsigned int __nr_readers;
unsigned int __readers_wakeup;
unsigned int __writer_wakeup;
unsigned int __nr_readers_queued;
unsigned int __nr_writers_queued;
unsigned char __flags;
unsigned char __shared;
unsigned char __pad1;
unsigned char __pad2;
int __writer;
} __data;
char __size[32];
long int __align;
} pthread_rwlock_t;
typedef union
{
char __size[8];
long int __align;
} pthread_rwlockattr_t;
typedef volatile int pthread_spinlock_t;
typedef union
{
char __size[20];
long int __align;
} pthread_barrier_t;
typedef union
{
char __size[4];
int __align;
} pthread_barrierattr_t;
# 271 "/usr/include/sys/types.h" 2 3 4
# 25 "/usr/include/bits/fcntl.h" 2 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 26 "/usr/include/bits/fcntl.h" 2 3 4
# 158 "/usr/include/bits/fcntl.h" 3 4
struct flock
{
short int l_type;
short int l_whence;
__off_t l_start;
__off_t l_len;
__pid_t l_pid;
};
# 225 "/usr/include/bits/fcntl.h" 3 4
# 254 "/usr/include/bits/fcntl.h" 3 4
# 35 "/usr/include/fcntl.h" 2 3 4
# 76 "/usr/include/fcntl.h" 3 4
extern int fcntl (int __fd, int __cmd, ...);
# 85 "/usr/include/fcntl.h" 3 4
extern int open (__const char *__file, int __oflag, ...) __attribute__ ((__nonnull__ (1)));
# 130 "/usr/include/fcntl.h" 3 4
extern int creat (__const char *__file, __mode_t __mode) __attribute__ ((__nonnull__ (1)));
# 159 "/usr/include/fcntl.h" 3 4
extern int lockf (int __fd, int __cmd, __off_t __len);
# 176 "/usr/include/fcntl.h" 3 4
extern int posix_fadvise (int __fd, __off_t __offset, __off_t __len,
int __advise) __attribute__ ((__nothrow__));
# 198 "/usr/include/fcntl.h" 3 4
extern int posix_fallocate (int __fd, __off_t __offset, __off_t __len);
# 220 "/usr/include/fcntl.h" 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_FCNTL_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: float.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/float.h" 1 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_FLOAT_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: io.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Possible ERROR while running preprocessor: /tmp/petsc-5zlcDX/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory
compilation terminated.
ret = 256
error message = {/tmp/petsc-5zlcDX/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory
compilation terminated.
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <io.h>
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: limits.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 1 3 4
# 34 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/syslimits.h" 1 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 1 3 4
# 169 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 3 4
# 1 "/usr/include/limits.h" 1 3 4
# 27 "/usr/include/limits.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 28 "/usr/include/limits.h" 2 3 4
# 145 "/usr/include/limits.h" 3 4
# 1 "/usr/include/bits/posix1_lim.h" 1 3 4
# 153 "/usr/include/bits/posix1_lim.h" 3 4
# 1 "/usr/include/bits/local_lim.h" 1 3 4
# 36 "/usr/include/bits/local_lim.h" 3 4
# 1 "/usr/include/linux/limits.h" 1 3 4
# 37 "/usr/include/bits/local_lim.h" 2 3 4
# 154 "/usr/include/bits/posix1_lim.h" 2 3 4
# 146 "/usr/include/limits.h" 2 3 4
# 1 "/usr/include/bits/posix2_lim.h" 1 3 4
# 150 "/usr/include/limits.h" 2 3 4
# 170 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 2 3 4
# 8 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/syslimits.h" 2 3 4
# 35 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 2 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_LIMITS_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: malloc.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/malloc.h" 1 3 4
# 24 "/usr/include/malloc.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 25 "/usr/include/malloc.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 149 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef int ptrdiff_t;
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 323 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef long int wchar_t;
# 26 "/usr/include/malloc.h" 2 3 4
# 47 "/usr/include/malloc.h" 3 4
extern void *malloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ;
extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__))
__attribute__ ((__malloc__)) ;
extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__))
__attribute__ ((__warn_unused_result__));
extern void free (void *__ptr) __attribute__ ((__nothrow__));
extern void cfree (void *__ptr) __attribute__ ((__nothrow__));
extern void *memalign (size_t __alignment, size_t __size) __attribute__ ((__nothrow__))
__attribute__ ((__malloc__)) ;
extern void *valloc (size_t __size) __attribute__ ((__nothrow__))
__attribute__ ((__malloc__)) ;
extern void * pvalloc (size_t __size) __attribute__ ((__nothrow__))
__attribute__ ((__malloc__)) ;
extern void *(*__morecore) (ptrdiff_t __size);
extern void *__default_morecore (ptrdiff_t __size) __attribute__ ((__nothrow__))
__attribute__ ((__malloc__));
struct mallinfo {
int arena;
int ordblks;
int smblks;
int hblks;
int hblkhd;
int usmblks;
int fsmblks;
int uordblks;
int fordblks;
int keepcost;
};
extern struct mallinfo mallinfo (void) __attribute__ ((__nothrow__));
# 132 "/usr/include/malloc.h" 3 4
extern int mallopt (int __param, int __val) __attribute__ ((__nothrow__));
extern int malloc_trim (size_t __pad) __attribute__ ((__nothrow__));
extern size_t malloc_usable_size (void *__ptr) __attribute__ ((__nothrow__));
extern void malloc_stats (void) __attribute__ ((__nothrow__));
extern void *malloc_get_state (void) __attribute__ ((__nothrow__));
extern int malloc_set_state (void *__ptr) __attribute__ ((__nothrow__));
extern void (*__malloc_initialize_hook) (void);
extern void (*__free_hook) (void *__ptr, __const void *)
;
extern void *(*__malloc_hook) (size_t __size, __const void *)
;
extern void *(*__realloc_hook) (void *__ptr, size_t __size, __const void *)
;
extern void *(*__memalign_hook) (size_t __alignment, size_t __size, __const void *)
;
extern void (*__after_morecore_hook) (void);
extern void __malloc_check_init (void) __attribute__ ((__nothrow__));
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_MALLOC_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: pwd.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/pwd.h" 1 3 4
# 26 "/usr/include/pwd.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 27 "/usr/include/pwd.h" 2 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 31 "/usr/include/pwd.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 34 "/usr/include/pwd.h" 2 3 4
typedef __gid_t gid_t;
typedef __uid_t uid_t;
struct passwd
{
char *pw_name;
char *pw_passwd;
__uid_t pw_uid;
__gid_t pw_gid;
char *pw_gecos;
char *pw_dir;
char *pw_shell;
};
# 1 "/usr/include/stdio.h" 1 3 4
# 45 "/usr/include/stdio.h" 3 4
struct _IO_FILE;
typedef struct _IO_FILE FILE;
# 65 "/usr/include/pwd.h" 2 3 4
# 73 "/usr/include/pwd.h" 3 4
extern void setpwent (void);
extern void endpwent (void);
extern struct passwd *getpwent (void);
# 95 "/usr/include/pwd.h" 3 4
extern struct passwd *fgetpwent (FILE *__stream);
extern int putpwent (__const struct passwd *__restrict __p,
FILE *__restrict __f);
extern struct passwd *getpwuid (__uid_t __uid);
extern struct passwd *getpwnam (__const char *__name);
# 140 "/usr/include/pwd.h" 3 4
extern int getpwent_r (struct passwd *__restrict __resultbuf,
char *__restrict __buffer, size_t __buflen,
struct passwd **__restrict __result);
extern int getpwuid_r (__uid_t __uid,
struct passwd *__restrict __resultbuf,
char *__restrict __buffer, size_t __buflen,
struct passwd **__restrict __result);
extern int getpwnam_r (__const char *__restrict __name,
struct passwd *__restrict __resultbuf,
char *__restrict __buffer, size_t __buflen,
struct passwd **__restrict __result);
# 164 "/usr/include/pwd.h" 3 4
extern int fgetpwent_r (FILE *__restrict __stream,
struct passwd *__restrict __resultbuf,
char *__restrict __buffer, size_t __buflen,
struct passwd **__restrict __result);
# 184 "/usr/include/pwd.h" 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_PWD_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: search.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/search.h" 1 3 4
# 23 "/usr/include/search.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 24 "/usr/include/search.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 27 "/usr/include/search.h" 2 3 4
# 45 "/usr/include/search.h" 3 4
extern void insque (void *__elem, void *__prev) __attribute__ ((__nothrow__));
extern void remque (void *__elem) __attribute__ ((__nothrow__));
typedef int (*__compar_fn_t) (__const void *, __const void *);
typedef enum
{
FIND,
ENTER
}
ACTION;
typedef struct entry
{
char *key;
void *data;
}
ENTRY;
struct _ENTRY;
# 88 "/usr/include/search.h" 3 4
extern ENTRY *hsearch (ENTRY __item, ACTION __action) __attribute__ ((__nothrow__));
extern int hcreate (size_t __nel) __attribute__ ((__nothrow__));
extern void hdestroy (void) __attribute__ ((__nothrow__));
# 119 "/usr/include/search.h" 3 4
typedef enum
{
preorder,
postorder,
endorder,
leaf
}
VISIT;
extern void *tsearch (__const void *__key, void **__rootp,
__compar_fn_t __compar);
extern void *tfind (__const void *__key, void *__const *__rootp,
__compar_fn_t __compar);
extern void *tdelete (__const void *__restrict __key,
void **__restrict __rootp,
__compar_fn_t __compar);
typedef void (*__action_fn_t) (__const void *__nodep, VISIT __value,
int __level);
extern void twalk (__const void *__root, __action_fn_t __action);
# 165 "/usr/include/search.h" 3 4
extern void *lfind (__const void *__key, __const void *__base,
size_t *__nmemb, size_t __size, __compar_fn_t __compar);
extern void *lsearch (__const void *__key, void *__base,
size_t *__nmemb, size_t __size, __compar_fn_t __compar);
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_SEARCH_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: strings.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/strings.h" 1 3 4
# 27 "/usr/include/strings.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 28 "/usr/include/strings.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 30 "/usr/include/strings.h" 2 3 4
extern int bcmp (__const void *__s1, __const void *__s2, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__));
extern void bcopy (__const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__));
extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__));
extern int ffs (int __i) __attribute__ ((__nothrow__)) __attribute__ ((const));
extern char *index (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__));
extern char *rindex (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__));
extern int strcasecmp (__const char *__s1, __const char *__s2)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__));
extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__));
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_STRINGS_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: unistd.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/unistd.h" 1 3 4
# 26 "/usr/include/unistd.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 27 "/usr/include/unistd.h" 2 3 4
# 173 "/usr/include/unistd.h" 3 4
# 1 "/usr/include/bits/posix_opt.h" 1 3 4
# 174 "/usr/include/unistd.h" 2 3 4
# 188 "/usr/include/unistd.h" 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 189 "/usr/include/unistd.h" 2 3 4
typedef __ssize_t ssize_t;
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 198 "/usr/include/unistd.h" 2 3 4
typedef __gid_t gid_t;
typedef __uid_t uid_t;
typedef __off_t off_t;
# 226 "/usr/include/unistd.h" 3 4
typedef __useconds_t useconds_t;
typedef __pid_t pid_t;
typedef __intptr_t intptr_t;
typedef __socklen_t socklen_t;
# 258 "/usr/include/unistd.h" 3 4
extern int access (__const char *__name, int __type) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 301 "/usr/include/unistd.h" 3 4
extern __off_t lseek (int __fd, __off_t __offset, int __whence) __attribute__ ((__nothrow__));
# 320 "/usr/include/unistd.h" 3 4
extern int close (int __fd);
extern ssize_t read (int __fd, void *__buf, size_t __nbytes) ;
extern ssize_t write (int __fd, __const void *__buf, size_t __n) ;
# 384 "/usr/include/unistd.h" 3 4
extern int pipe (int __pipedes[2]) __attribute__ ((__nothrow__)) ;
# 393 "/usr/include/unistd.h" 3 4
extern unsigned int alarm (unsigned int __seconds) __attribute__ ((__nothrow__));
# 405 "/usr/include/unistd.h" 3 4
extern unsigned int sleep (unsigned int __seconds);
extern __useconds_t ualarm (__useconds_t __value, __useconds_t __interval)
__attribute__ ((__nothrow__));
extern int usleep (__useconds_t __useconds);
# 429 "/usr/include/unistd.h" 3 4
extern int pause (void);
extern int chown (__const char *__file, __uid_t __owner, __gid_t __group)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern int fchown (int __fd, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__)) ;
extern int lchown (__const char *__file, __uid_t __owner, __gid_t __group)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
# 457 "/usr/include/unistd.h" 3 4
extern int chdir (__const char *__path) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern int fchdir (int __fd) __attribute__ ((__nothrow__)) ;
# 471 "/usr/include/unistd.h" 3 4
extern char *getcwd (char *__buf, size_t __size) __attribute__ ((__nothrow__)) ;
# 484 "/usr/include/unistd.h" 3 4
extern char *getwd (char *__buf)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)) ;
extern int dup (int __fd) __attribute__ ((__nothrow__)) ;
extern int dup2 (int __fd, int __fd2) __attribute__ ((__nothrow__));
extern char **__environ;
extern int execve (__const char *__path, char *__const __argv[],
char *__const __envp[]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 516 "/usr/include/unistd.h" 3 4
extern int execv (__const char *__path, char *__const __argv[])
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int execle (__const char *__path, __const char *__arg, ...)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int execl (__const char *__path, __const char *__arg, ...)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int execvp (__const char *__file, char *__const __argv[])
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int execlp (__const char *__file, __const char *__arg, ...)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int nice (int __inc) __attribute__ ((__nothrow__)) ;
extern void _exit (int __status) __attribute__ ((__noreturn__));
# 1 "/usr/include/bits/confname.h" 1 3 4
# 26 "/usr/include/bits/confname.h" 3 4
enum
{
_PC_LINK_MAX,
_PC_MAX_CANON,
_PC_MAX_INPUT,
_PC_NAME_MAX,
_PC_PATH_MAX,
_PC_PIPE_BUF,
_PC_CHOWN_RESTRICTED,
_PC_NO_TRUNC,
_PC_VDISABLE,
_PC_SYNC_IO,
_PC_ASYNC_IO,
_PC_PRIO_IO,
_PC_SOCK_MAXBUF,
_PC_FILESIZEBITS,
_PC_REC_INCR_XFER_SIZE,
_PC_REC_MAX_XFER_SIZE,
_PC_REC_MIN_XFER_SIZE,
_PC_REC_XFER_ALIGN,
_PC_ALLOC_SIZE_MIN,
_PC_SYMLINK_MAX,
_PC_2_SYMLINKS
};
enum
{
_SC_ARG_MAX,
_SC_CHILD_MAX,
_SC_CLK_TCK,
_SC_NGROUPS_MAX,
_SC_OPEN_MAX,
_SC_STREAM_MAX,
_SC_TZNAME_MAX,
_SC_JOB_CONTROL,
_SC_SAVED_IDS,
_SC_REALTIME_SIGNALS,
_SC_PRIORITY_SCHEDULING,
_SC_TIMERS,
_SC_ASYNCHRONOUS_IO,
_SC_PRIORITIZED_IO,
_SC_SYNCHRONIZED_IO,
_SC_FSYNC,
_SC_MAPPED_FILES,
_SC_MEMLOCK,
_SC_MEMLOCK_RANGE,
_SC_MEMORY_PROTECTION,
_SC_MESSAGE_PASSING,
_SC_SEMAPHORES,
_SC_SHARED_MEMORY_OBJECTS,
_SC_AIO_LISTIO_MAX,
_SC_AIO_MAX,
_SC_AIO_PRIO_DELTA_MAX,
_SC_DELAYTIMER_MAX,
_SC_MQ_OPEN_MAX,
_SC_MQ_PRIO_MAX,
_SC_VERSION,
_SC_PAGESIZE,
_SC_RTSIG_MAX,
_SC_SEM_NSEMS_MAX,
_SC_SEM_VALUE_MAX,
_SC_SIGQUEUE_MAX,
_SC_TIMER_MAX,
_SC_BC_BASE_MAX,
_SC_BC_DIM_MAX,
_SC_BC_SCALE_MAX,
_SC_BC_STRING_MAX,
_SC_COLL_WEIGHTS_MAX,
_SC_EQUIV_CLASS_MAX,
_SC_EXPR_NEST_MAX,
_SC_LINE_MAX,
_SC_RE_DUP_MAX,
_SC_CHARCLASS_NAME_MAX,
_SC_2_VERSION,
_SC_2_C_BIND,
_SC_2_C_DEV,
_SC_2_FORT_DEV,
_SC_2_FORT_RUN,
_SC_2_SW_DEV,
_SC_2_LOCALEDEF,
_SC_PII,
_SC_PII_XTI,
_SC_PII_SOCKET,
_SC_PII_INTERNET,
_SC_PII_OSI,
_SC_POLL,
_SC_SELECT,
_SC_UIO_MAXIOV,
_SC_IOV_MAX = _SC_UIO_MAXIOV,
_SC_PII_INTERNET_STREAM,
_SC_PII_INTERNET_DGRAM,
_SC_PII_OSI_COTS,
_SC_PII_OSI_CLTS,
_SC_PII_OSI_M,
_SC_T_IOV_MAX,
_SC_THREADS,
_SC_THREAD_SAFE_FUNCTIONS,
_SC_GETGR_R_SIZE_MAX,
_SC_GETPW_R_SIZE_MAX,
_SC_LOGIN_NAME_MAX,
_SC_TTY_NAME_MAX,
_SC_THREAD_DESTRUCTOR_ITERATIONS,
_SC_THREAD_KEYS_MAX,
_SC_THREAD_STACK_MIN,
_SC_THREAD_THREADS_MAX,
_SC_THREAD_ATTR_STACKADDR,
_SC_THREAD_ATTR_STACKSIZE,
_SC_THREAD_PRIORITY_SCHEDULING,
_SC_THREAD_PRIO_INHERIT,
_SC_THREAD_PRIO_PROTECT,
_SC_THREAD_PROCESS_SHARED,
_SC_NPROCESSORS_CONF,
_SC_NPROCESSORS_ONLN,
_SC_PHYS_PAGES,
_SC_AVPHYS_PAGES,
_SC_ATEXIT_MAX,
_SC_PASS_MAX,
_SC_XOPEN_VERSION,
_SC_XOPEN_XCU_VERSION,
_SC_XOPEN_UNIX,
_SC_XOPEN_CRYPT,
_SC_XOPEN_ENH_I18N,
_SC_XOPEN_SHM,
_SC_2_CHAR_TERM,
_SC_2_C_VERSION,
_SC_2_UPE,
_SC_XOPEN_XPG2,
_SC_XOPEN_XPG3,
_SC_XOPEN_XPG4,
_SC_CHAR_BIT,
_SC_CHAR_MAX,
_SC_CHAR_MIN,
_SC_INT_MAX,
_SC_INT_MIN,
_SC_LONG_BIT,
_SC_WORD_BIT,
_SC_MB_LEN_MAX,
_SC_NZERO,
_SC_SSIZE_MAX,
_SC_SCHAR_MAX,
_SC_SCHAR_MIN,
_SC_SHRT_MAX,
_SC_SHRT_MIN,
_SC_UCHAR_MAX,
_SC_UINT_MAX,
_SC_ULONG_MAX,
_SC_USHRT_MAX,
_SC_NL_ARGMAX,
_SC_NL_LANGMAX,
_SC_NL_MSGMAX,
_SC_NL_NMAX,
_SC_NL_SETMAX,
_SC_NL_TEXTMAX,
_SC_XBS5_ILP32_OFF32,
_SC_XBS5_ILP32_OFFBIG,
_SC_XBS5_LP64_OFF64,
_SC_XBS5_LPBIG_OFFBIG,
_SC_XOPEN_LEGACY,
_SC_XOPEN_REALTIME,
_SC_XOPEN_REALTIME_THREADS,
_SC_ADVISORY_INFO,
_SC_BARRIERS,
_SC_BASE,
_SC_C_LANG_SUPPORT,
_SC_C_LANG_SUPPORT_R,
_SC_CLOCK_SELECTION,
_SC_CPUTIME,
_SC_THREAD_CPUTIME,
_SC_DEVICE_IO,
_SC_DEVICE_SPECIFIC,
_SC_DEVICE_SPECIFIC_R,
_SC_FD_MGMT,
_SC_FIFO,
_SC_PIPE,
_SC_FILE_ATTRIBUTES,
_SC_FILE_LOCKING,
_SC_FILE_SYSTEM,
_SC_MONOTONIC_CLOCK,
_SC_MULTI_PROCESS,
_SC_SINGLE_PROCESS,
_SC_NETWORKING,
_SC_READER_WRITER_LOCKS,
_SC_SPIN_LOCKS,
_SC_REGEXP,
_SC_REGEX_VERSION,
_SC_SHELL,
_SC_SIGNALS,
_SC_SPAWN,
_SC_SPORADIC_SERVER,
_SC_THREAD_SPORADIC_SERVER,
_SC_SYSTEM_DATABASE,
_SC_SYSTEM_DATABASE_R,
_SC_TIMEOUTS,
_SC_TYPED_MEMORY_OBJECTS,
_SC_USER_GROUPS,
_SC_USER_GROUPS_R,
_SC_2_PBS,
_SC_2_PBS_ACCOUNTING,
_SC_2_PBS_LOCATE,
_SC_2_PBS_MESSAGE,
_SC_2_PBS_TRACK,
_SC_SYMLOOP_MAX,
_SC_STREAMS,
_SC_2_PBS_CHECKPOINT,
_SC_V6_ILP32_OFF32,
_SC_V6_ILP32_OFFBIG,
_SC_V6_LP64_OFF64,
_SC_V6_LPBIG_OFFBIG,
_SC_HOST_NAME_MAX,
_SC_TRACE,
_SC_TRACE_EVENT_FILTER,
_SC_TRACE_INHERIT,
_SC_TRACE_LOG,
_SC_LEVEL1_ICACHE_SIZE,
_SC_LEVEL1_ICACHE_ASSOC,
_SC_LEVEL1_ICACHE_LINESIZE,
_SC_LEVEL1_DCACHE_SIZE,
_SC_LEVEL1_DCACHE_ASSOC,
_SC_LEVEL1_DCACHE_LINESIZE,
_SC_LEVEL2_CACHE_SIZE,
_SC_LEVEL2_CACHE_ASSOC,
_SC_LEVEL2_CACHE_LINESIZE,
_SC_LEVEL3_CACHE_SIZE,
_SC_LEVEL3_CACHE_ASSOC,
_SC_LEVEL3_CACHE_LINESIZE,
_SC_LEVEL4_CACHE_SIZE,
_SC_LEVEL4_CACHE_ASSOC,
_SC_LEVEL4_CACHE_LINESIZE,
_SC_IPV6 = _SC_LEVEL1_ICACHE_SIZE + 50,
_SC_RAW_SOCKETS
};
enum
{
_CS_PATH,
_CS_V6_WIDTH_RESTRICTED_ENVS,
_CS_GNU_LIBC_VERSION,
_CS_GNU_LIBPTHREAD_VERSION,
_CS_LFS_CFLAGS = 1000,
_CS_LFS_LDFLAGS,
_CS_LFS_LIBS,
_CS_LFS_LINTFLAGS,
_CS_LFS64_CFLAGS,
_CS_LFS64_LDFLAGS,
_CS_LFS64_LIBS,
_CS_LFS64_LINTFLAGS,
_CS_XBS5_ILP32_OFF32_CFLAGS = 1100,
_CS_XBS5_ILP32_OFF32_LDFLAGS,
_CS_XBS5_ILP32_OFF32_LIBS,
_CS_XBS5_ILP32_OFF32_LINTFLAGS,
_CS_XBS5_ILP32_OFFBIG_CFLAGS,
_CS_XBS5_ILP32_OFFBIG_LDFLAGS,
_CS_XBS5_ILP32_OFFBIG_LIBS,
_CS_XBS5_ILP32_OFFBIG_LINTFLAGS,
_CS_XBS5_LP64_OFF64_CFLAGS,
_CS_XBS5_LP64_OFF64_LDFLAGS,
_CS_XBS5_LP64_OFF64_LIBS,
_CS_XBS5_LP64_OFF64_LINTFLAGS,
_CS_XBS5_LPBIG_OFFBIG_CFLAGS,
_CS_XBS5_LPBIG_OFFBIG_LDFLAGS,
_CS_XBS5_LPBIG_OFFBIG_LIBS,
_CS_XBS5_LPBIG_OFFBIG_LINTFLAGS,
_CS_POSIX_V6_ILP32_OFF32_CFLAGS,
_CS_POSIX_V6_ILP32_OFF32_LDFLAGS,
_CS_POSIX_V6_ILP32_OFF32_LIBS,
_CS_POSIX_V6_ILP32_OFF32_LINTFLAGS,
_CS_POSIX_V6_ILP32_OFFBIG_CFLAGS,
_CS_POSIX_V6_ILP32_OFFBIG_LDFLAGS,
_CS_POSIX_V6_ILP32_OFFBIG_LIBS,
_CS_POSIX_V6_ILP32_OFFBIG_LINTFLAGS,
_CS_POSIX_V6_LP64_OFF64_CFLAGS,
_CS_POSIX_V6_LP64_OFF64_LDFLAGS,
_CS_POSIX_V6_LP64_OFF64_LIBS,
_CS_POSIX_V6_LP64_OFF64_LINTFLAGS,
_CS_POSIX_V6_LPBIG_OFFBIG_CFLAGS,
_CS_POSIX_V6_LPBIG_OFFBIG_LDFLAGS,
_CS_POSIX_V6_LPBIG_OFFBIG_LIBS,
_CS_POSIX_V6_LPBIG_OFFBIG_LINTFLAGS
};
# 555 "/usr/include/unistd.h" 2 3 4
extern long int pathconf (__const char *__path, int __name)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern long int fpathconf (int __fd, int __name) __attribute__ ((__nothrow__));
extern long int sysconf (int __name) __attribute__ ((__nothrow__));
extern size_t confstr (int __name, char *__buf, size_t __len) __attribute__ ((__nothrow__));
extern __pid_t getpid (void) __attribute__ ((__nothrow__));
extern __pid_t getppid (void) __attribute__ ((__nothrow__));
extern __pid_t getpgrp (void) __attribute__ ((__nothrow__));
# 591 "/usr/include/unistd.h" 3 4
extern __pid_t __getpgid (__pid_t __pid) __attribute__ ((__nothrow__));
# 600 "/usr/include/unistd.h" 3 4
extern int setpgid (__pid_t __pid, __pid_t __pgid) __attribute__ ((__nothrow__));
# 617 "/usr/include/unistd.h" 3 4
extern int setpgrp (void) __attribute__ ((__nothrow__));
# 634 "/usr/include/unistd.h" 3 4
extern __pid_t setsid (void) __attribute__ ((__nothrow__));
extern __uid_t getuid (void) __attribute__ ((__nothrow__));
extern __uid_t geteuid (void) __attribute__ ((__nothrow__));
extern __gid_t getgid (void) __attribute__ ((__nothrow__));
extern __gid_t getegid (void) __attribute__ ((__nothrow__));
extern int getgroups (int __size, __gid_t __list[]) __attribute__ ((__nothrow__)) ;
# 667 "/usr/include/unistd.h" 3 4
extern int setuid (__uid_t __uid) __attribute__ ((__nothrow__));
extern int setreuid (__uid_t __ruid, __uid_t __euid) __attribute__ ((__nothrow__));
extern int seteuid (__uid_t __uid) __attribute__ ((__nothrow__));
extern int setgid (__gid_t __gid) __attribute__ ((__nothrow__));
extern int setregid (__gid_t __rgid, __gid_t __egid) __attribute__ ((__nothrow__));
extern int setegid (__gid_t __gid) __attribute__ ((__nothrow__));
# 723 "/usr/include/unistd.h" 3 4
extern __pid_t fork (void) __attribute__ ((__nothrow__));
extern __pid_t vfork (void) __attribute__ ((__nothrow__));
extern char *ttyname (int __fd) __attribute__ ((__nothrow__));
extern int ttyname_r (int __fd, char *__buf, size_t __buflen)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))) ;
extern int isatty (int __fd) __attribute__ ((__nothrow__));
extern int ttyslot (void) __attribute__ ((__nothrow__));
extern int link (__const char *__from, __const char *__to)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))) ;
# 769 "/usr/include/unistd.h" 3 4
extern int symlink (__const char *__from, __const char *__to)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))) ;
extern ssize_t readlink (__const char *__restrict __path,
char *__restrict __buf, size_t __len)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))) ;
# 792 "/usr/include/unistd.h" 3 4
extern int unlink (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 801 "/usr/include/unistd.h" 3 4
extern int rmdir (__const char *__path) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern __pid_t tcgetpgrp (int __fd) __attribute__ ((__nothrow__));
extern int tcsetpgrp (int __fd, __pid_t __pgrp_id) __attribute__ ((__nothrow__));
extern char *getlogin (void);
extern int getlogin_r (char *__name, size_t __name_len) __attribute__ ((__nonnull__ (1)));
extern int setlogin (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 837 "/usr/include/unistd.h" 3 4
# 1 "/usr/include/getopt.h" 1 3 4
# 59 "/usr/include/getopt.h" 3 4
extern char *optarg;
# 73 "/usr/include/getopt.h" 3 4
extern int optind;
extern int opterr;
extern int optopt;
# 152 "/usr/include/getopt.h" 3 4
extern int getopt (int ___argc, char *const *___argv, const char *__shortopts)
__attribute__ ((__nothrow__));
# 838 "/usr/include/unistd.h" 2 3 4
extern int gethostname (char *__name, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int sethostname (__const char *__name, size_t __len)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern int sethostid (long int __id) __attribute__ ((__nothrow__)) ;
extern int getdomainname (char *__name, size_t __len)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern int setdomainname (__const char *__name, size_t __len)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern int vhangup (void) __attribute__ ((__nothrow__));
extern int revoke (__const char *__file) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern int profil (unsigned short int *__sample_buffer, size_t __size,
size_t __offset, unsigned int __scale)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int acct (__const char *__name) __attribute__ ((__nothrow__));
extern char *getusershell (void) __attribute__ ((__nothrow__));
extern void endusershell (void) __attribute__ ((__nothrow__));
extern void setusershell (void) __attribute__ ((__nothrow__));
extern int daemon (int __nochdir, int __noclose) __attribute__ ((__nothrow__)) ;
extern int chroot (__const char *__path) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern char *getpass (__const char *__prompt) __attribute__ ((__nonnull__ (1)));
# 923 "/usr/include/unistd.h" 3 4
extern int fsync (int __fd);
extern long int gethostid (void);
extern void sync (void) __attribute__ ((__nothrow__));
extern int getpagesize (void) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern int getdtablesize (void) __attribute__ ((__nothrow__));
extern int truncate (__const char *__file, __off_t __length)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
# 970 "/usr/include/unistd.h" 3 4
extern int ftruncate (int __fd, __off_t __length) __attribute__ ((__nothrow__)) ;
# 990 "/usr/include/unistd.h" 3 4
extern int brk (void *__addr) __attribute__ ((__nothrow__)) ;
extern void *sbrk (intptr_t __delta) __attribute__ ((__nothrow__));
# 1011 "/usr/include/unistd.h" 3 4
extern long int syscall (long int __sysno, ...) __attribute__ ((__nothrow__));
# 1034 "/usr/include/unistd.h" 3 4
extern int lockf (int __fd, int __cmd, __off_t __len) ;
# 1065 "/usr/include/unistd.h" 3 4
extern int fdatasync (int __fildes);
# 1103 "/usr/include/unistd.h" 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_UNISTD_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/sysinfo.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/sys/sysinfo.h" 1 3 4
# 22 "/usr/include/sys/sysinfo.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 23 "/usr/include/sys/sysinfo.h" 2 3 4
# 1 "/usr/include/linux/kernel.h" 1 3 4
# 10 "/usr/include/linux/kernel.h" 3 4
struct sysinfo {
long uptime;
unsigned long loads[3];
unsigned long totalram;
unsigned long freeram;
unsigned long sharedram;
unsigned long bufferram;
unsigned long totalswap;
unsigned long freeswap;
unsigned short procs;
unsigned short pad;
unsigned long totalhigh;
unsigned long freehigh;
unsigned int mem_unit;
char _f[20-2*sizeof(long)-sizeof(int)];
};
# 26 "/usr/include/sys/sysinfo.h" 2 3 4
extern int sysinfo (struct sysinfo *__info) __attribute__ ((__nothrow__));
extern int get_nprocs_conf (void) __attribute__ ((__nothrow__));
extern int get_nprocs (void) __attribute__ ((__nothrow__));
extern long int get_phys_pages (void) __attribute__ ((__nothrow__));
extern long int get_avphys_pages (void) __attribute__ ((__nothrow__));
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_SYS_SYSINFO_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: machine/endian.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Possible ERROR while running preprocessor: /tmp/petsc-5zlcDX/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory
compilation terminated.
ret = 256
error message = {/tmp/petsc-5zlcDX/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory
compilation terminated.
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <machine/endian.h>
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/param.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/sys/param.h" 1 3 4
# 22 "/usr/include/sys/param.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 1 3 4
# 34 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/syslimits.h" 1 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 1 3 4
# 169 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 3 4
# 1 "/usr/include/limits.h" 1 3 4
# 27 "/usr/include/limits.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 28 "/usr/include/limits.h" 2 3 4
# 145 "/usr/include/limits.h" 3 4
# 1 "/usr/include/bits/posix1_lim.h" 1 3 4
# 153 "/usr/include/bits/posix1_lim.h" 3 4
# 1 "/usr/include/bits/local_lim.h" 1 3 4
# 36 "/usr/include/bits/local_lim.h" 3 4
# 1 "/usr/include/linux/limits.h" 1 3 4
# 37 "/usr/include/bits/local_lim.h" 2 3 4
# 154 "/usr/include/bits/posix1_lim.h" 2 3 4
# 146 "/usr/include/limits.h" 2 3 4
# 1 "/usr/include/bits/posix2_lim.h" 1 3 4
# 150 "/usr/include/limits.h" 2 3 4
# 170 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 2 3 4
# 8 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/syslimits.h" 2 3 4
# 35 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 2 3 4
# 23 "/usr/include/sys/param.h" 2 3 4
# 1 "/usr/include/linux/param.h" 1 3 4
# 1 "/usr/include/asm/param.h" 1 3 4
# 5 "/usr/include/linux/param.h" 2 3 4
# 25 "/usr/include/sys/param.h" 2 3 4
# 42 "/usr/include/sys/param.h" 3 4
# 1 "/usr/include/sys/types.h" 1 3 4
# 29 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 32 "/usr/include/sys/types.h" 2 3 4
typedef __u_char u_char;
typedef __u_short u_short;
typedef __u_int u_int;
typedef __u_long u_long;
typedef __quad_t quad_t;
typedef __u_quad_t u_quad_t;
typedef __fsid_t fsid_t;
typedef __loff_t loff_t;
typedef __ino_t ino_t;
# 62 "/usr/include/sys/types.h" 3 4
typedef __dev_t dev_t;
typedef __gid_t gid_t;
typedef __mode_t mode_t;
typedef __nlink_t nlink_t;
typedef __uid_t uid_t;
typedef __off_t off_t;
# 100 "/usr/include/sys/types.h" 3 4
typedef __pid_t pid_t;
typedef __id_t id_t;
typedef __ssize_t ssize_t;
typedef __daddr_t daddr_t;
typedef __caddr_t caddr_t;
typedef __key_t key_t;
# 133 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/time.h" 1 3 4
# 75 "/usr/include/time.h" 3 4
typedef __time_t time_t;
# 93 "/usr/include/time.h" 3 4
typedef __clockid_t clockid_t;
# 105 "/usr/include/time.h" 3 4
typedef __timer_t timer_t;
# 134 "/usr/include/sys/types.h" 2 3 4
# 147 "/usr/include/sys/types.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 148 "/usr/include/sys/types.h" 2 3 4
typedef unsigned long int ulong;
typedef unsigned short int ushort;
typedef unsigned int uint;
# 195 "/usr/include/sys/types.h" 3 4
typedef int int8_t __attribute__ ((__mode__ (__QI__)));
typedef int int16_t __attribute__ ((__mode__ (__HI__)));
typedef int int32_t __attribute__ ((__mode__ (__SI__)));
typedef int int64_t __attribute__ ((__mode__ (__DI__)));
typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__)));
typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__)));
typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__)));
typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__)));
typedef int register_t __attribute__ ((__mode__ (__word__)));
# 217 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/endian.h" 1 3 4
# 37 "/usr/include/endian.h" 3 4
# 1 "/usr/include/bits/endian.h" 1 3 4
# 38 "/usr/include/endian.h" 2 3 4
# 218 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/select.h" 1 3 4
# 31 "/usr/include/sys/select.h" 3 4
# 1 "/usr/include/bits/select.h" 1 3 4
# 32 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/sigset.h" 1 3 4
# 24 "/usr/include/bits/sigset.h" 3 4
typedef int __sig_atomic_t;
typedef struct
{
unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))];
} __sigset_t;
# 35 "/usr/include/sys/select.h" 2 3 4
typedef __sigset_t sigset_t;
# 1 "/usr/include/time.h" 1 3 4
# 121 "/usr/include/time.h" 3 4
struct timespec
{
__time_t tv_sec;
long int tv_nsec;
};
# 45 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/time.h" 1 3 4
# 69 "/usr/include/bits/time.h" 3 4
struct timeval
{
__time_t tv_sec;
__suseconds_t tv_usec;
};
# 47 "/usr/include/sys/select.h" 2 3 4
typedef __suseconds_t suseconds_t;
typedef long int __fd_mask;
# 67 "/usr/include/sys/select.h" 3 4
typedef struct
{
__fd_mask __fds_bits[1024 / (8 * sizeof (__fd_mask))];
} fd_set;
typedef __fd_mask fd_mask;
# 99 "/usr/include/sys/select.h" 3 4
# 109 "/usr/include/sys/select.h" 3 4
extern int select (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
struct timeval *__restrict __timeout);
# 121 "/usr/include/sys/select.h" 3 4
extern int pselect (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
const struct timespec *__restrict __timeout,
const __sigset_t *__restrict __sigmask);
# 221 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/sysmacros.h" 1 3 4
# 30 "/usr/include/sys/sysmacros.h" 3 4
__extension__
extern unsigned int gnu_dev_major (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned int gnu_dev_minor (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned long long int gnu_dev_makedev (unsigned int __major,
unsigned int __minor)
__attribute__ ((__nothrow__));
# 224 "/usr/include/sys/types.h" 2 3 4
# 235 "/usr/include/sys/types.h" 3 4
typedef __blkcnt_t blkcnt_t;
typedef __fsblkcnt_t fsblkcnt_t;
typedef __fsfilcnt_t fsfilcnt_t;
# 270 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/pthreadtypes.h" 1 3 4
# 23 "/usr/include/bits/pthreadtypes.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 24 "/usr/include/bits/pthreadtypes.h" 2 3 4
# 50 "/usr/include/bits/pthreadtypes.h" 3 4
typedef unsigned long int pthread_t;
typedef union
{
char __size[36];
long int __align;
} pthread_attr_t;
# 67 "/usr/include/bits/pthreadtypes.h" 3 4
typedef struct __pthread_internal_slist
{
struct __pthread_internal_slist *__next;
} __pthread_slist_t;
typedef union
{
struct __pthread_mutex_s
{
int __lock;
unsigned int __count;
int __owner;
int __kind;
unsigned int __nusers;
__extension__ union
{
int __spins;
__pthread_slist_t __list;
};
} __data;
char __size[24];
long int __align;
} pthread_mutex_t;
typedef union
{
char __size[4];
int __align;
} pthread_mutexattr_t;
typedef union
{
struct
{
int __lock;
unsigned int __futex;
__extension__ unsigned long long int __total_seq;
__extension__ unsigned long long int __wakeup_seq;
__extension__ unsigned long long int __woken_seq;
void *__mutex;
unsigned int __nwaiters;
unsigned int __broadcast_seq;
} __data;
char __size[48];
__extension__ long long int __align;
} pthread_cond_t;
typedef union
{
char __size[4];
int __align;
} pthread_condattr_t;
typedef unsigned int pthread_key_t;
typedef int pthread_once_t;
typedef union
{
# 170 "/usr/include/bits/pthreadtypes.h" 3 4
struct
{
int __lock;
unsigned int __nr_readers;
unsigned int __readers_wakeup;
unsigned int __writer_wakeup;
unsigned int __nr_readers_queued;
unsigned int __nr_writers_queued;
unsigned char __flags;
unsigned char __shared;
unsigned char __pad1;
unsigned char __pad2;
int __writer;
} __data;
char __size[32];
long int __align;
} pthread_rwlock_t;
typedef union
{
char __size[8];
long int __align;
} pthread_rwlockattr_t;
typedef volatile int pthread_spinlock_t;
typedef union
{
char __size[20];
long int __align;
} pthread_barrier_t;
typedef union
{
char __size[4];
int __align;
} pthread_barrierattr_t;
# 271 "/usr/include/sys/types.h" 2 3 4
# 43 "/usr/include/sys/param.h" 2 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_SYS_PARAM_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/procfs.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/sys/procfs.h" 1 3 4
# 31 "/usr/include/sys/procfs.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 32 "/usr/include/sys/procfs.h" 2 3 4
# 1 "/usr/include/sys/time.h" 1 3 4
# 25 "/usr/include/sys/time.h" 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 26 "/usr/include/sys/time.h" 2 3 4
# 1 "/usr/include/time.h" 1 3 4
# 75 "/usr/include/time.h" 3 4
typedef __time_t time_t;
# 28 "/usr/include/sys/time.h" 2 3 4
# 1 "/usr/include/bits/time.h" 1 3 4
# 69 "/usr/include/bits/time.h" 3 4
struct timeval
{
__time_t tv_sec;
__suseconds_t tv_usec;
};
# 30 "/usr/include/sys/time.h" 2 3 4
# 1 "/usr/include/sys/select.h" 1 3 4
# 31 "/usr/include/sys/select.h" 3 4
# 1 "/usr/include/bits/select.h" 1 3 4
# 32 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/sigset.h" 1 3 4
# 24 "/usr/include/bits/sigset.h" 3 4
typedef int __sig_atomic_t;
typedef struct
{
unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))];
} __sigset_t;
# 35 "/usr/include/sys/select.h" 2 3 4
typedef __sigset_t sigset_t;
# 1 "/usr/include/time.h" 1 3 4
# 121 "/usr/include/time.h" 3 4
struct timespec
{
__time_t tv_sec;
long int tv_nsec;
};
# 45 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/time.h" 1 3 4
# 47 "/usr/include/sys/select.h" 2 3 4
typedef __suseconds_t suseconds_t;
typedef long int __fd_mask;
# 67 "/usr/include/sys/select.h" 3 4
typedef struct
{
__fd_mask __fds_bits[1024 / (8 * sizeof (__fd_mask))];
} fd_set;
typedef __fd_mask fd_mask;
# 99 "/usr/include/sys/select.h" 3 4
# 109 "/usr/include/sys/select.h" 3 4
extern int select (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
struct timeval *__restrict __timeout);
# 121 "/usr/include/sys/select.h" 3 4
extern int pselect (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
const struct timespec *__restrict __timeout,
const __sigset_t *__restrict __sigmask);
# 32 "/usr/include/sys/time.h" 2 3 4
# 57 "/usr/include/sys/time.h" 3 4
struct timezone
{
int tz_minuteswest;
int tz_dsttime;
};
typedef struct timezone *__restrict __timezone_ptr_t;
# 73 "/usr/include/sys/time.h" 3 4
extern int gettimeofday (struct timeval *__restrict __tv,
__timezone_ptr_t __tz) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int settimeofday (__const struct timeval *__tv,
__const struct timezone *__tz)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int adjtime (__const struct timeval *__delta,
struct timeval *__olddelta) __attribute__ ((__nothrow__));
enum __itimer_which
{
ITIMER_REAL = 0,
ITIMER_VIRTUAL = 1,
ITIMER_PROF = 2
};
struct itimerval
{
struct timeval it_interval;
struct timeval it_value;
};
typedef int __itimer_which_t;
extern int getitimer (__itimer_which_t __which,
struct itimerval *__value) __attribute__ ((__nothrow__));
extern int setitimer (__itimer_which_t __which,
__const struct itimerval *__restrict __new,
struct itimerval *__restrict __old) __attribute__ ((__nothrow__));
extern int utimes (__const char *__file, __const struct timeval __tvp[2])
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int lutimes (__const char *__file, __const struct timeval __tvp[2])
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int futimes (int __fd, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__));
# 191 "/usr/include/sys/time.h" 3 4
# 33 "/usr/include/sys/procfs.h" 2 3 4
# 1 "/usr/include/sys/types.h" 1 3 4
# 29 "/usr/include/sys/types.h" 3 4
typedef __u_char u_char;
typedef __u_short u_short;
typedef __u_int u_int;
typedef __u_long u_long;
typedef __quad_t quad_t;
typedef __u_quad_t u_quad_t;
typedef __fsid_t fsid_t;
typedef __loff_t loff_t;
typedef __ino_t ino_t;
# 62 "/usr/include/sys/types.h" 3 4
typedef __dev_t dev_t;
typedef __gid_t gid_t;
typedef __mode_t mode_t;
typedef __nlink_t nlink_t;
typedef __uid_t uid_t;
typedef __off_t off_t;
# 100 "/usr/include/sys/types.h" 3 4
typedef __pid_t pid_t;
typedef __id_t id_t;
typedef __ssize_t ssize_t;
typedef __daddr_t daddr_t;
typedef __caddr_t caddr_t;
typedef __key_t key_t;
# 133 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/time.h" 1 3 4
# 93 "/usr/include/time.h" 3 4
typedef __clockid_t clockid_t;
# 105 "/usr/include/time.h" 3 4
typedef __timer_t timer_t;
# 134 "/usr/include/sys/types.h" 2 3 4
# 147 "/usr/include/sys/types.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 148 "/usr/include/sys/types.h" 2 3 4
typedef unsigned long int ulong;
typedef unsigned short int ushort;
typedef unsigned int uint;
# 195 "/usr/include/sys/types.h" 3 4
typedef int int8_t __attribute__ ((__mode__ (__QI__)));
typedef int int16_t __attribute__ ((__mode__ (__HI__)));
typedef int int32_t __attribute__ ((__mode__ (__SI__)));
typedef int int64_t __attribute__ ((__mode__ (__DI__)));
typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__)));
typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__)));
typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__)));
typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__)));
typedef int register_t __attribute__ ((__mode__ (__word__)));
# 217 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/endian.h" 1 3 4
# 37 "/usr/include/endian.h" 3 4
# 1 "/usr/include/bits/endian.h" 1 3 4
# 38 "/usr/include/endian.h" 2 3 4
# 218 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/sysmacros.h" 1 3 4
# 30 "/usr/include/sys/sysmacros.h" 3 4
__extension__
extern unsigned int gnu_dev_major (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned int gnu_dev_minor (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned long long int gnu_dev_makedev (unsigned int __major,
unsigned int __minor)
__attribute__ ((__nothrow__));
# 224 "/usr/include/sys/types.h" 2 3 4
# 235 "/usr/include/sys/types.h" 3 4
typedef __blkcnt_t blkcnt_t;
typedef __fsblkcnt_t fsblkcnt_t;
typedef __fsfilcnt_t fsfilcnt_t;
# 270 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/pthreadtypes.h" 1 3 4
# 23 "/usr/include/bits/pthreadtypes.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 24 "/usr/include/bits/pthreadtypes.h" 2 3 4
# 50 "/usr/include/bits/pthreadtypes.h" 3 4
typedef unsigned long int pthread_t;
typedef union
{
char __size[36];
long int __align;
} pthread_attr_t;
# 67 "/usr/include/bits/pthreadtypes.h" 3 4
typedef struct __pthread_internal_slist
{
struct __pthread_internal_slist *__next;
} __pthread_slist_t;
typedef union
{
struct __pthread_mutex_s
{
int __lock;
unsigned int __count;
int __owner;
int __kind;
unsigned int __nusers;
__extension__ union
{
int __spins;
__pthread_slist_t __list;
};
} __data;
char __size[24];
long int __align;
} pthread_mutex_t;
typedef union
{
char __size[4];
int __align;
} pthread_mutexattr_t;
typedef union
{
struct
{
int __lock;
unsigned int __futex;
__extension__ unsigned long long int __total_seq;
__extension__ unsigned long long int __wakeup_seq;
__extension__ unsigned long long int __woken_seq;
void *__mutex;
unsigned int __nwaiters;
unsigned int __broadcast_seq;
} __data;
char __size[48];
__extension__ long long int __align;
} pthread_cond_t;
typedef union
{
char __size[4];
int __align;
} pthread_condattr_t;
typedef unsigned int pthread_key_t;
typedef int pthread_once_t;
typedef union
{
# 170 "/usr/include/bits/pthreadtypes.h" 3 4
struct
{
int __lock;
unsigned int __nr_readers;
unsigned int __readers_wakeup;
unsigned int __writer_wakeup;
unsigned int __nr_readers_queued;
unsigned int __nr_writers_queued;
unsigned char __flags;
unsigned char __shared;
unsigned char __pad1;
unsigned char __pad2;
int __writer;
} __data;
char __size[32];
long int __align;
} pthread_rwlock_t;
typedef union
{
char __size[8];
long int __align;
} pthread_rwlockattr_t;
typedef volatile int pthread_spinlock_t;
typedef union
{
char __size[20];
long int __align;
} pthread_barrier_t;
typedef union
{
char __size[4];
int __align;
} pthread_barrierattr_t;
# 271 "/usr/include/sys/types.h" 2 3 4
# 34 "/usr/include/sys/procfs.h" 2 3 4
# 1 "/usr/include/sys/user.h" 1 3 4
# 26 "/usr/include/sys/user.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 27 "/usr/include/sys/user.h" 2 3 4
# 1 "/usr/include/unistd.h" 1 3 4
# 28 "/usr/include/unistd.h" 3 4
# 173 "/usr/include/unistd.h" 3 4
# 1 "/usr/include/bits/posix_opt.h" 1 3 4
# 174 "/usr/include/unistd.h" 2 3 4
# 197 "/usr/include/unistd.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 198 "/usr/include/unistd.h" 2 3 4
# 226 "/usr/include/unistd.h" 3 4
typedef __useconds_t useconds_t;
# 238 "/usr/include/unistd.h" 3 4
typedef __intptr_t intptr_t;
typedef __socklen_t socklen_t;
# 258 "/usr/include/unistd.h" 3 4
extern int access (__const char *__name, int __type) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 301 "/usr/include/unistd.h" 3 4
extern __off_t lseek (int __fd, __off_t __offset, int __whence) __attribute__ ((__nothrow__));
# 320 "/usr/include/unistd.h" 3 4
extern int close (int __fd);
extern ssize_t read (int __fd, void *__buf, size_t __nbytes) ;
extern ssize_t write (int __fd, __const void *__buf, size_t __n) ;
# 384 "/usr/include/unistd.h" 3 4
extern int pipe (int __pipedes[2]) __attribute__ ((__nothrow__)) ;
# 393 "/usr/include/unistd.h" 3 4
extern unsigned int alarm (unsigned int __seconds) __attribute__ ((__nothrow__));
# 405 "/usr/include/unistd.h" 3 4
extern unsigned int sleep (unsigned int __seconds);
extern __useconds_t ualarm (__useconds_t __value, __useconds_t __interval)
__attribute__ ((__nothrow__));
extern int usleep (__useconds_t __useconds);
# 429 "/usr/include/unistd.h" 3 4
extern int pause (void);
extern int chown (__const char *__file, __uid_t __owner, __gid_t __group)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern int fchown (int __fd, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__)) ;
extern int lchown (__const char *__file, __uid_t __owner, __gid_t __group)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
# 457 "/usr/include/unistd.h" 3 4
extern int chdir (__const char *__path) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern int fchdir (int __fd) __attribute__ ((__nothrow__)) ;
# 471 "/usr/include/unistd.h" 3 4
extern char *getcwd (char *__buf, size_t __size) __attribute__ ((__nothrow__)) ;
# 484 "/usr/include/unistd.h" 3 4
extern char *getwd (char *__buf)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)) ;
extern int dup (int __fd) __attribute__ ((__nothrow__)) ;
extern int dup2 (int __fd, int __fd2) __attribute__ ((__nothrow__));
extern char **__environ;
extern int execve (__const char *__path, char *__const __argv[],
char *__const __envp[]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 516 "/usr/include/unistd.h" 3 4
extern int execv (__const char *__path, char *__const __argv[])
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int execle (__const char *__path, __const char *__arg, ...)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int execl (__const char *__path, __const char *__arg, ...)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int execvp (__const char *__file, char *__const __argv[])
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int execlp (__const char *__file, __const char *__arg, ...)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int nice (int __inc) __attribute__ ((__nothrow__)) ;
extern void _exit (int __status) __attribute__ ((__noreturn__));
# 1 "/usr/include/bits/confname.h" 1 3 4
# 26 "/usr/include/bits/confname.h" 3 4
enum
{
_PC_LINK_MAX,
_PC_MAX_CANON,
_PC_MAX_INPUT,
_PC_NAME_MAX,
_PC_PATH_MAX,
_PC_PIPE_BUF,
_PC_CHOWN_RESTRICTED,
_PC_NO_TRUNC,
_PC_VDISABLE,
_PC_SYNC_IO,
_PC_ASYNC_IO,
_PC_PRIO_IO,
_PC_SOCK_MAXBUF,
_PC_FILESIZEBITS,
_PC_REC_INCR_XFER_SIZE,
_PC_REC_MAX_XFER_SIZE,
_PC_REC_MIN_XFER_SIZE,
_PC_REC_XFER_ALIGN,
_PC_ALLOC_SIZE_MIN,
_PC_SYMLINK_MAX,
_PC_2_SYMLINKS
};
enum
{
_SC_ARG_MAX,
_SC_CHILD_MAX,
_SC_CLK_TCK,
_SC_NGROUPS_MAX,
_SC_OPEN_MAX,
_SC_STREAM_MAX,
_SC_TZNAME_MAX,
_SC_JOB_CONTROL,
_SC_SAVED_IDS,
_SC_REALTIME_SIGNALS,
_SC_PRIORITY_SCHEDULING,
_SC_TIMERS,
_SC_ASYNCHRONOUS_IO,
_SC_PRIORITIZED_IO,
_SC_SYNCHRONIZED_IO,
_SC_FSYNC,
_SC_MAPPED_FILES,
_SC_MEMLOCK,
_SC_MEMLOCK_RANGE,
_SC_MEMORY_PROTECTION,
_SC_MESSAGE_PASSING,
_SC_SEMAPHORES,
_SC_SHARED_MEMORY_OBJECTS,
_SC_AIO_LISTIO_MAX,
_SC_AIO_MAX,
_SC_AIO_PRIO_DELTA_MAX,
_SC_DELAYTIMER_MAX,
_SC_MQ_OPEN_MAX,
_SC_MQ_PRIO_MAX,
_SC_VERSION,
_SC_PAGESIZE,
_SC_RTSIG_MAX,
_SC_SEM_NSEMS_MAX,
_SC_SEM_VALUE_MAX,
_SC_SIGQUEUE_MAX,
_SC_TIMER_MAX,
_SC_BC_BASE_MAX,
_SC_BC_DIM_MAX,
_SC_BC_SCALE_MAX,
_SC_BC_STRING_MAX,
_SC_COLL_WEIGHTS_MAX,
_SC_EQUIV_CLASS_MAX,
_SC_EXPR_NEST_MAX,
_SC_LINE_MAX,
_SC_RE_DUP_MAX,
_SC_CHARCLASS_NAME_MAX,
_SC_2_VERSION,
_SC_2_C_BIND,
_SC_2_C_DEV,
_SC_2_FORT_DEV,
_SC_2_FORT_RUN,
_SC_2_SW_DEV,
_SC_2_LOCALEDEF,
_SC_PII,
_SC_PII_XTI,
_SC_PII_SOCKET,
_SC_PII_INTERNET,
_SC_PII_OSI,
_SC_POLL,
_SC_SELECT,
_SC_UIO_MAXIOV,
_SC_IOV_MAX = _SC_UIO_MAXIOV,
_SC_PII_INTERNET_STREAM,
_SC_PII_INTERNET_DGRAM,
_SC_PII_OSI_COTS,
_SC_PII_OSI_CLTS,
_SC_PII_OSI_M,
_SC_T_IOV_MAX,
_SC_THREADS,
_SC_THREAD_SAFE_FUNCTIONS,
_SC_GETGR_R_SIZE_MAX,
_SC_GETPW_R_SIZE_MAX,
_SC_LOGIN_NAME_MAX,
_SC_TTY_NAME_MAX,
_SC_THREAD_DESTRUCTOR_ITERATIONS,
_SC_THREAD_KEYS_MAX,
_SC_THREAD_STACK_MIN,
_SC_THREAD_THREADS_MAX,
_SC_THREAD_ATTR_STACKADDR,
_SC_THREAD_ATTR_STACKSIZE,
_SC_THREAD_PRIORITY_SCHEDULING,
_SC_THREAD_PRIO_INHERIT,
_SC_THREAD_PRIO_PROTECT,
_SC_THREAD_PROCESS_SHARED,
_SC_NPROCESSORS_CONF,
_SC_NPROCESSORS_ONLN,
_SC_PHYS_PAGES,
_SC_AVPHYS_PAGES,
_SC_ATEXIT_MAX,
_SC_PASS_MAX,
_SC_XOPEN_VERSION,
_SC_XOPEN_XCU_VERSION,
_SC_XOPEN_UNIX,
_SC_XOPEN_CRYPT,
_SC_XOPEN_ENH_I18N,
_SC_XOPEN_SHM,
_SC_2_CHAR_TERM,
_SC_2_C_VERSION,
_SC_2_UPE,
_SC_XOPEN_XPG2,
_SC_XOPEN_XPG3,
_SC_XOPEN_XPG4,
_SC_CHAR_BIT,
_SC_CHAR_MAX,
_SC_CHAR_MIN,
_SC_INT_MAX,
_SC_INT_MIN,
_SC_LONG_BIT,
_SC_WORD_BIT,
_SC_MB_LEN_MAX,
_SC_NZERO,
_SC_SSIZE_MAX,
_SC_SCHAR_MAX,
_SC_SCHAR_MIN,
_SC_SHRT_MAX,
_SC_SHRT_MIN,
_SC_UCHAR_MAX,
_SC_UINT_MAX,
_SC_ULONG_MAX,
_SC_USHRT_MAX,
_SC_NL_ARGMAX,
_SC_NL_LANGMAX,
_SC_NL_MSGMAX,
_SC_NL_NMAX,
_SC_NL_SETMAX,
_SC_NL_TEXTMAX,
_SC_XBS5_ILP32_OFF32,
_SC_XBS5_ILP32_OFFBIG,
_SC_XBS5_LP64_OFF64,
_SC_XBS5_LPBIG_OFFBIG,
_SC_XOPEN_LEGACY,
_SC_XOPEN_REALTIME,
_SC_XOPEN_REALTIME_THREADS,
_SC_ADVISORY_INFO,
_SC_BARRIERS,
_SC_BASE,
_SC_C_LANG_SUPPORT,
_SC_C_LANG_SUPPORT_R,
_SC_CLOCK_SELECTION,
_SC_CPUTIME,
_SC_THREAD_CPUTIME,
_SC_DEVICE_IO,
_SC_DEVICE_SPECIFIC,
_SC_DEVICE_SPECIFIC_R,
_SC_FD_MGMT,
_SC_FIFO,
_SC_PIPE,
_SC_FILE_ATTRIBUTES,
_SC_FILE_LOCKING,
_SC_FILE_SYSTEM,
_SC_MONOTONIC_CLOCK,
_SC_MULTI_PROCESS,
_SC_SINGLE_PROCESS,
_SC_NETWORKING,
_SC_READER_WRITER_LOCKS,
_SC_SPIN_LOCKS,
_SC_REGEXP,
_SC_REGEX_VERSION,
_SC_SHELL,
_SC_SIGNALS,
_SC_SPAWN,
_SC_SPORADIC_SERVER,
_SC_THREAD_SPORADIC_SERVER,
_SC_SYSTEM_DATABASE,
_SC_SYSTEM_DATABASE_R,
_SC_TIMEOUTS,
_SC_TYPED_MEMORY_OBJECTS,
_SC_USER_GROUPS,
_SC_USER_GROUPS_R,
_SC_2_PBS,
_SC_2_PBS_ACCOUNTING,
_SC_2_PBS_LOCATE,
_SC_2_PBS_MESSAGE,
_SC_2_PBS_TRACK,
_SC_SYMLOOP_MAX,
_SC_STREAMS,
_SC_2_PBS_CHECKPOINT,
_SC_V6_ILP32_OFF32,
_SC_V6_ILP32_OFFBIG,
_SC_V6_LP64_OFF64,
_SC_V6_LPBIG_OFFBIG,
_SC_HOST_NAME_MAX,
_SC_TRACE,
_SC_TRACE_EVENT_FILTER,
_SC_TRACE_INHERIT,
_SC_TRACE_LOG,
_SC_LEVEL1_ICACHE_SIZE,
_SC_LEVEL1_ICACHE_ASSOC,
_SC_LEVEL1_ICACHE_LINESIZE,
_SC_LEVEL1_DCACHE_SIZE,
_SC_LEVEL1_DCACHE_ASSOC,
_SC_LEVEL1_DCACHE_LINESIZE,
_SC_LEVEL2_CACHE_SIZE,
_SC_LEVEL2_CACHE_ASSOC,
_SC_LEVEL2_CACHE_LINESIZE,
_SC_LEVEL3_CACHE_SIZE,
_SC_LEVEL3_CACHE_ASSOC,
_SC_LEVEL3_CACHE_LINESIZE,
_SC_LEVEL4_CACHE_SIZE,
_SC_LEVEL4_CACHE_ASSOC,
_SC_LEVEL4_CACHE_LINESIZE,
_SC_IPV6 = _SC_LEVEL1_ICACHE_SIZE + 50,
_SC_RAW_SOCKETS
};
enum
{
_CS_PATH,
_CS_V6_WIDTH_RESTRICTED_ENVS,
_CS_GNU_LIBC_VERSION,
_CS_GNU_LIBPTHREAD_VERSION,
_CS_LFS_CFLAGS = 1000,
_CS_LFS_LDFLAGS,
_CS_LFS_LIBS,
_CS_LFS_LINTFLAGS,
_CS_LFS64_CFLAGS,
_CS_LFS64_LDFLAGS,
_CS_LFS64_LIBS,
_CS_LFS64_LINTFLAGS,
_CS_XBS5_ILP32_OFF32_CFLAGS = 1100,
_CS_XBS5_ILP32_OFF32_LDFLAGS,
_CS_XBS5_ILP32_OFF32_LIBS,
_CS_XBS5_ILP32_OFF32_LINTFLAGS,
_CS_XBS5_ILP32_OFFBIG_CFLAGS,
_CS_XBS5_ILP32_OFFBIG_LDFLAGS,
_CS_XBS5_ILP32_OFFBIG_LIBS,
_CS_XBS5_ILP32_OFFBIG_LINTFLAGS,
_CS_XBS5_LP64_OFF64_CFLAGS,
_CS_XBS5_LP64_OFF64_LDFLAGS,
_CS_XBS5_LP64_OFF64_LIBS,
_CS_XBS5_LP64_OFF64_LINTFLAGS,
_CS_XBS5_LPBIG_OFFBIG_CFLAGS,
_CS_XBS5_LPBIG_OFFBIG_LDFLAGS,
_CS_XBS5_LPBIG_OFFBIG_LIBS,
_CS_XBS5_LPBIG_OFFBIG_LINTFLAGS,
_CS_POSIX_V6_ILP32_OFF32_CFLAGS,
_CS_POSIX_V6_ILP32_OFF32_LDFLAGS,
_CS_POSIX_V6_ILP32_OFF32_LIBS,
_CS_POSIX_V6_ILP32_OFF32_LINTFLAGS,
_CS_POSIX_V6_ILP32_OFFBIG_CFLAGS,
_CS_POSIX_V6_ILP32_OFFBIG_LDFLAGS,
_CS_POSIX_V6_ILP32_OFFBIG_LIBS,
_CS_POSIX_V6_ILP32_OFFBIG_LINTFLAGS,
_CS_POSIX_V6_LP64_OFF64_CFLAGS,
_CS_POSIX_V6_LP64_OFF64_LDFLAGS,
_CS_POSIX_V6_LP64_OFF64_LIBS,
_CS_POSIX_V6_LP64_OFF64_LINTFLAGS,
_CS_POSIX_V6_LPBIG_OFFBIG_CFLAGS,
_CS_POSIX_V6_LPBIG_OFFBIG_LDFLAGS,
_CS_POSIX_V6_LPBIG_OFFBIG_LIBS,
_CS_POSIX_V6_LPBIG_OFFBIG_LINTFLAGS
};
# 555 "/usr/include/unistd.h" 2 3 4
extern long int pathconf (__const char *__path, int __name)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern long int fpathconf (int __fd, int __name) __attribute__ ((__nothrow__));
extern long int sysconf (int __name) __attribute__ ((__nothrow__));
extern size_t confstr (int __name, char *__buf, size_t __len) __attribute__ ((__nothrow__));
extern __pid_t getpid (void) __attribute__ ((__nothrow__));
extern __pid_t getppid (void) __attribute__ ((__nothrow__));
extern __pid_t getpgrp (void) __attribute__ ((__nothrow__));
# 591 "/usr/include/unistd.h" 3 4
extern __pid_t __getpgid (__pid_t __pid) __attribute__ ((__nothrow__));
# 600 "/usr/include/unistd.h" 3 4
extern int setpgid (__pid_t __pid, __pid_t __pgid) __attribute__ ((__nothrow__));
# 617 "/usr/include/unistd.h" 3 4
extern int setpgrp (void) __attribute__ ((__nothrow__));
# 634 "/usr/include/unistd.h" 3 4
extern __pid_t setsid (void) __attribute__ ((__nothrow__));
extern __uid_t getuid (void) __attribute__ ((__nothrow__));
extern __uid_t geteuid (void) __attribute__ ((__nothrow__));
extern __gid_t getgid (void) __attribute__ ((__nothrow__));
extern __gid_t getegid (void) __attribute__ ((__nothrow__));
extern int getgroups (int __size, __gid_t __list[]) __attribute__ ((__nothrow__)) ;
# 667 "/usr/include/unistd.h" 3 4
extern int setuid (__uid_t __uid) __attribute__ ((__nothrow__));
extern int setreuid (__uid_t __ruid, __uid_t __euid) __attribute__ ((__nothrow__));
extern int seteuid (__uid_t __uid) __attribute__ ((__nothrow__));
extern int setgid (__gid_t __gid) __attribute__ ((__nothrow__));
extern int setregid (__gid_t __rgid, __gid_t __egid) __attribute__ ((__nothrow__));
extern int setegid (__gid_t __gid) __attribute__ ((__nothrow__));
# 723 "/usr/include/unistd.h" 3 4
extern __pid_t fork (void) __attribute__ ((__nothrow__));
extern __pid_t vfork (void) __attribute__ ((__nothrow__));
extern char *ttyname (int __fd) __attribute__ ((__nothrow__));
extern int ttyname_r (int __fd, char *__buf, size_t __buflen)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))) ;
extern int isatty (int __fd) __attribute__ ((__nothrow__));
extern int ttyslot (void) __attribute__ ((__nothrow__));
extern int link (__const char *__from, __const char *__to)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))) ;
# 769 "/usr/include/unistd.h" 3 4
extern int symlink (__const char *__from, __const char *__to)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))) ;
extern ssize_t readlink (__const char *__restrict __path,
char *__restrict __buf, size_t __len)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))) ;
# 792 "/usr/include/unistd.h" 3 4
extern int unlink (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 801 "/usr/include/unistd.h" 3 4
extern int rmdir (__const char *__path) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern __pid_t tcgetpgrp (int __fd) __attribute__ ((__nothrow__));
extern int tcsetpgrp (int __fd, __pid_t __pgrp_id) __attribute__ ((__nothrow__));
extern char *getlogin (void);
extern int getlogin_r (char *__name, size_t __name_len) __attribute__ ((__nonnull__ (1)));
extern int setlogin (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 837 "/usr/include/unistd.h" 3 4
# 1 "/usr/include/getopt.h" 1 3 4
# 59 "/usr/include/getopt.h" 3 4
extern char *optarg;
# 73 "/usr/include/getopt.h" 3 4
extern int optind;
extern int opterr;
extern int optopt;
# 152 "/usr/include/getopt.h" 3 4
extern int getopt (int ___argc, char *const *___argv, const char *__shortopts)
__attribute__ ((__nothrow__));
# 838 "/usr/include/unistd.h" 2 3 4
extern int gethostname (char *__name, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int sethostname (__const char *__name, size_t __len)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern int sethostid (long int __id) __attribute__ ((__nothrow__)) ;
extern int getdomainname (char *__name, size_t __len)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern int setdomainname (__const char *__name, size_t __len)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern int vhangup (void) __attribute__ ((__nothrow__));
extern int revoke (__const char *__file) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern int profil (unsigned short int *__sample_buffer, size_t __size,
size_t __offset, unsigned int __scale)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int acct (__const char *__name) __attribute__ ((__nothrow__));
extern char *getusershell (void) __attribute__ ((__nothrow__));
extern void endusershell (void) __attribute__ ((__nothrow__));
extern void setusershell (void) __attribute__ ((__nothrow__));
extern int daemon (int __nochdir, int __noclose) __attribute__ ((__nothrow__)) ;
extern int chroot (__const char *__path) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern char *getpass (__const char *__prompt) __attribute__ ((__nonnull__ (1)));
# 923 "/usr/include/unistd.h" 3 4
extern int fsync (int __fd);
extern long int gethostid (void);
extern void sync (void) __attribute__ ((__nothrow__));
extern int getpagesize (void) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern int getdtablesize (void) __attribute__ ((__nothrow__));
extern int truncate (__const char *__file, __off_t __length)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
# 970 "/usr/include/unistd.h" 3 4
extern int ftruncate (int __fd, __off_t __length) __attribute__ ((__nothrow__)) ;
# 990 "/usr/include/unistd.h" 3 4
extern int brk (void *__addr) __attribute__ ((__nothrow__)) ;
extern void *sbrk (intptr_t __delta) __attribute__ ((__nothrow__));
# 1011 "/usr/include/unistd.h" 3 4
extern long int syscall (long int __sysno, ...) __attribute__ ((__nothrow__));
# 1034 "/usr/include/unistd.h" 3 4
extern int lockf (int __fd, int __cmd, __off_t __len) ;
# 1065 "/usr/include/unistd.h" 3 4
extern int fdatasync (int __fildes);
# 1103 "/usr/include/unistd.h" 3 4
# 28 "/usr/include/sys/user.h" 2 3 4
# 98 "/usr/include/sys/user.h" 3 4
struct user_fpregs_struct
{
long int cwd;
long int swd;
long int twd;
long int fip;
long int fcs;
long int foo;
long int fos;
long int st_space [20];
};
struct user_fpxregs_struct
{
unsigned short int cwd;
unsigned short int swd;
unsigned short int twd;
unsigned short int fop;
long int fip;
long int fcs;
long int foo;
long int fos;
long int mxcsr;
long int reserved;
long int st_space[32];
long int xmm_space[32];
long int padding[56];
};
struct user_regs_struct
{
long int ebx;
long int ecx;
long int edx;
long int esi;
long int edi;
long int ebp;
long int eax;
long int xds;
long int xes;
long int xfs;
long int xgs;
long int orig_eax;
long int eip;
long int xcs;
long int eflags;
long int esp;
long int xss;
};
struct user
{
struct user_regs_struct regs;
int u_fpvalid;
struct user_fpregs_struct i387;
unsigned long int u_tsize;
unsigned long int u_dsize;
unsigned long int u_ssize;
unsigned long start_code;
unsigned long start_stack;
long int signal;
int reserved;
struct user_regs_struct* u_ar0;
struct user_fpregs_struct* u_fpstate;
unsigned long int magic;
char u_comm [32];
int u_debugreg [8];
};
# 35 "/usr/include/sys/procfs.h" 2 3 4
typedef unsigned long elf_greg_t;
typedef elf_greg_t elf_gregset_t[(sizeof (struct user_regs_struct) / sizeof(elf_greg_t))];
typedef struct user_fpregs_struct elf_fpregset_t;
typedef struct user_fpxregs_struct elf_fpxregset_t;
# 64 "/usr/include/sys/procfs.h" 3 4
struct elf_siginfo
{
int si_signo;
int si_code;
int si_errno;
};
# 79 "/usr/include/sys/procfs.h" 3 4
struct elf_prstatus
{
struct elf_siginfo pr_info;
short int pr_cursig;
unsigned long int pr_sigpend;
unsigned long int pr_sighold;
__pid_t pr_pid;
__pid_t pr_ppid;
__pid_t pr_pgrp;
__pid_t pr_sid;
struct timeval pr_utime;
struct timeval pr_stime;
struct timeval pr_cutime;
struct timeval pr_cstime;
elf_gregset_t pr_reg;
int pr_fpvalid;
};
struct elf_prpsinfo
{
char pr_state;
char pr_sname;
char pr_zomb;
char pr_nice;
unsigned long int pr_flag;
unsigned short int pr_uid;
unsigned short int pr_gid;
int pr_pid, pr_ppid, pr_pgrp, pr_sid;
char pr_fname[16];
char pr_psargs[(80)];
};
typedef void *psaddr_t;
typedef elf_gregset_t prgregset_t;
typedef elf_fpregset_t prfpregset_t;
typedef __pid_t lwpid_t;
typedef struct elf_prstatus prstatus_t;
typedef struct elf_prpsinfo prpsinfo_t;
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_SYS_PROCFS_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/resource.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/sys/resource.h" 1 3 4
# 22 "/usr/include/sys/resource.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 23 "/usr/include/sys/resource.h" 2 3 4
# 1 "/usr/include/bits/resource.h" 1 3 4
# 25 "/usr/include/bits/resource.h" 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 26 "/usr/include/bits/resource.h" 2 3 4
enum __rlimit_resource
{
RLIMIT_CPU = 0,
RLIMIT_FSIZE = 1,
RLIMIT_DATA = 2,
RLIMIT_STACK = 3,
RLIMIT_CORE = 4,
__RLIMIT_RSS = 5,
RLIMIT_NOFILE = 7,
__RLIMIT_OFILE = RLIMIT_NOFILE,
RLIMIT_AS = 9,
__RLIMIT_NPROC = 6,
__RLIMIT_MEMLOCK = 8,
__RLIMIT_LOCKS = 10,
__RLIMIT_SIGPENDING = 11,
__RLIMIT_MSGQUEUE = 12,
__RLIMIT_NICE = 13,
__RLIMIT_RTPRIO = 14,
__RLIMIT_NLIMITS = 15,
__RLIM_NLIMITS = __RLIMIT_NLIMITS
};
# 127 "/usr/include/bits/resource.h" 3 4
typedef __rlim_t rlim_t;
struct rlimit
{
rlim_t rlim_cur;
rlim_t rlim_max;
};
# 154 "/usr/include/bits/resource.h" 3 4
enum __rusage_who
{
RUSAGE_SELF = 0,
RUSAGE_CHILDREN = -1
};
# 1 "/usr/include/bits/time.h" 1 3 4
# 69 "/usr/include/bits/time.h" 3 4
struct timeval
{
__time_t tv_sec;
__suseconds_t tv_usec;
};
# 167 "/usr/include/bits/resource.h" 2 3 4
struct rusage
{
struct timeval ru_utime;
struct timeval ru_stime;
long int ru_maxrss;
long int ru_ixrss;
long int ru_idrss;
long int ru_isrss;
long int ru_minflt;
long int ru_majflt;
long int ru_nswap;
long int ru_inblock;
long int ru_oublock;
long int ru_msgsnd;
long int ru_msgrcv;
long int ru_nsignals;
long int ru_nvcsw;
long int ru_nivcsw;
};
enum __priority_which
{
PRIO_PROCESS = 0,
PRIO_PGRP = 1,
PRIO_USER = 2
};
# 26 "/usr/include/sys/resource.h" 2 3 4
typedef __id_t id_t;
# 43 "/usr/include/sys/resource.h" 3 4
typedef int __rlimit_resource_t;
typedef int __rusage_who_t;
typedef int __priority_which_t;
extern int getrlimit (__rlimit_resource_t __resource,
struct rlimit *__rlimits) __attribute__ ((__nothrow__));
# 70 "/usr/include/sys/resource.h" 3 4
extern int setrlimit (__rlimit_resource_t __resource,
__const struct rlimit *__rlimits) __attribute__ ((__nothrow__));
# 88 "/usr/include/sys/resource.h" 3 4
extern int getrusage (__rusage_who_t __who, struct rusage *__usage) __attribute__ ((__nothrow__));
extern int getpriority (__priority_which_t __which, id_t __who) __attribute__ ((__nothrow__));
extern int setpriority (__priority_which_t __which, id_t __who, int __prio)
__attribute__ ((__nothrow__));
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_SYS_RESOURCE_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/systeminfo.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Possible ERROR while running preprocessor: /tmp/petsc-5zlcDX/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory
compilation terminated.
ret = 256
error message = {/tmp/petsc-5zlcDX/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory
compilation terminated.
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/systeminfo.h>
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/times.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/sys/times.h" 1 3 4
# 26 "/usr/include/sys/times.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 27 "/usr/include/sys/times.h" 2 3 4
# 1 "/usr/include/time.h" 1 3 4
# 57 "/usr/include/time.h" 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 58 "/usr/include/time.h" 2 3 4
typedef __clock_t clock_t;
# 30 "/usr/include/sys/times.h" 2 3 4
struct tms
{
clock_t tms_utime;
clock_t tms_stime;
clock_t tms_cutime;
clock_t tms_cstime;
};
extern clock_t times (struct tms *__buffer) __attribute__ ((__nothrow__));
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_SYS_TIMES_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/utsname.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/sys/utsname.h" 1 3 4
# 26 "/usr/include/sys/utsname.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 27 "/usr/include/sys/utsname.h" 2 3 4
# 1 "/usr/include/bits/utsname.h" 1 3 4
# 31 "/usr/include/sys/utsname.h" 2 3 4
# 49 "/usr/include/sys/utsname.h" 3 4
struct utsname
{
char sysname[65];
char nodename[65];
char release[65];
char version[65];
char machine[65];
char __domainname[65];
};
# 82 "/usr/include/sys/utsname.h" 3 4
extern int uname (struct utsname *__name) __attribute__ ((__nothrow__));
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_SYS_UTSNAME_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: string.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/string.h" 1 3 4
# 26 "/usr/include/string.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 27 "/usr/include/string.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 34 "/usr/include/string.h" 2 3 4
extern void *memcpy (void *__restrict __dest,
__const void *__restrict __src, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern void *memmove (void *__dest, __const void *__src, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern void *memccpy (void *__restrict __dest, __const void *__restrict __src,
int __c, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern void *memset (void *__s, int __c, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int memcmp (__const void *__s1, __const void *__s2, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern void *memchr (__const void *__s, int __c, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1)));
# 82 "/usr/include/string.h" 3 4
extern char *strcpy (char *__restrict __dest, __const char *__restrict __src)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *strncpy (char *__restrict __dest,
__const char *__restrict __src, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *strcat (char *__restrict __dest, __const char *__restrict __src)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *strncat (char *__restrict __dest, __const char *__restrict __src,
size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int strcmp (__const char *__s1, __const char *__s2)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern int strncmp (__const char *__s1, __const char *__s2, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern int strcoll (__const char *__s1, __const char *__s2)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern size_t strxfrm (char *__restrict __dest,
__const char *__restrict __src, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2)));
# 130 "/usr/include/string.h" 3 4
extern char *strdup (__const char *__s)
__attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1)));
# 165 "/usr/include/string.h" 3 4
extern char *strchr (__const char *__s, int __c)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1)));
extern char *strrchr (__const char *__s, int __c)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1)));
# 181 "/usr/include/string.h" 3 4
extern size_t strcspn (__const char *__s, __const char *__reject)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern size_t strspn (__const char *__s, __const char *__accept)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *strpbrk (__const char *__s, __const char *__accept)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *strstr (__const char *__haystack, __const char *__needle)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *strtok (char *__restrict __s, __const char *__restrict __delim)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2)));
extern char *__strtok_r (char *__restrict __s,
__const char *__restrict __delim,
char **__restrict __save_ptr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3)));
extern char *strtok_r (char *__restrict __s, __const char *__restrict __delim,
char **__restrict __save_ptr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3)));
# 240 "/usr/include/string.h" 3 4
extern size_t strlen (__const char *__s)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1)));
# 254 "/usr/include/string.h" 3 4
extern char *strerror (int __errnum) __attribute__ ((__nothrow__));
# 270 "/usr/include/string.h" 3 4
extern int strerror_r (int __errnum, char *__buf, size_t __buflen) __asm__ ("" "__xpg_strerror_r") __attribute__ ((__nothrow__))
__attribute__ ((__nonnull__ (2)));
# 294 "/usr/include/string.h" 3 4
extern void __bzero (void *__s, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern void bcopy (__const void *__src, void *__dest, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int bcmp (__const void *__s1, __const void *__s2, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *index (__const char *__s, int __c)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1)));
extern char *rindex (__const char *__s, int __c)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1)));
extern int ffs (int __i) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
# 331 "/usr/include/string.h" 3 4
extern int strcasecmp (__const char *__s1, __const char *__s2)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
# 354 "/usr/include/string.h" 3 4
extern char *strsep (char **__restrict __stringp,
__const char *__restrict __delim)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
# 432 "/usr/include/string.h" 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_STRING_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: stdlib.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/stdlib.h" 1 3 4
# 25 "/usr/include/stdlib.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 26 "/usr/include/stdlib.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 323 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef long int wchar_t;
# 34 "/usr/include/stdlib.h" 2 3 4
# 96 "/usr/include/stdlib.h" 3 4
typedef struct
{
int quot;
int rem;
} div_t;
typedef struct
{
long int quot;
long int rem;
} ldiv_t;
# 140 "/usr/include/stdlib.h" 3 4
extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__)) ;
extern double atof (__const char *__nptr)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ;
extern int atoi (__const char *__nptr)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ;
extern long int atol (__const char *__nptr)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ;
__extension__ extern long long int atoll (__const char *__nptr)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ;
extern double strtod (__const char *__restrict __nptr,
char **__restrict __endptr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
# 182 "/usr/include/stdlib.h" 3 4
extern long int strtol (__const char *__restrict __nptr,
char **__restrict __endptr, int __base)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern unsigned long int strtoul (__const char *__restrict __nptr,
char **__restrict __endptr, int __base)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
__extension__
extern long long int strtoq (__const char *__restrict __nptr,
char **__restrict __endptr, int __base)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
__extension__
extern unsigned long long int strtouq (__const char *__restrict __nptr,
char **__restrict __endptr, int __base)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
__extension__
extern long long int strtoll (__const char *__restrict __nptr,
char **__restrict __endptr, int __base)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
__extension__
extern unsigned long long int strtoull (__const char *__restrict __nptr,
char **__restrict __endptr, int __base)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
# 311 "/usr/include/stdlib.h" 3 4
extern char *l64a (long int __n) __attribute__ ((__nothrow__)) ;
extern long int a64l (__const char *__s)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ;
# 1 "/usr/include/sys/types.h" 1 3 4
# 29 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 32 "/usr/include/sys/types.h" 2 3 4
typedef __u_char u_char;
typedef __u_short u_short;
typedef __u_int u_int;
typedef __u_long u_long;
typedef __quad_t quad_t;
typedef __u_quad_t u_quad_t;
typedef __fsid_t fsid_t;
typedef __loff_t loff_t;
typedef __ino_t ino_t;
# 62 "/usr/include/sys/types.h" 3 4
typedef __dev_t dev_t;
typedef __gid_t gid_t;
typedef __mode_t mode_t;
typedef __nlink_t nlink_t;
typedef __uid_t uid_t;
typedef __off_t off_t;
# 100 "/usr/include/sys/types.h" 3 4
typedef __pid_t pid_t;
typedef __id_t id_t;
typedef __ssize_t ssize_t;
typedef __daddr_t daddr_t;
typedef __caddr_t caddr_t;
typedef __key_t key_t;
# 133 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/time.h" 1 3 4
# 75 "/usr/include/time.h" 3 4
typedef __time_t time_t;
# 93 "/usr/include/time.h" 3 4
typedef __clockid_t clockid_t;
# 105 "/usr/include/time.h" 3 4
typedef __timer_t timer_t;
# 134 "/usr/include/sys/types.h" 2 3 4
# 147 "/usr/include/sys/types.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 148 "/usr/include/sys/types.h" 2 3 4
typedef unsigned long int ulong;
typedef unsigned short int ushort;
typedef unsigned int uint;
# 195 "/usr/include/sys/types.h" 3 4
typedef int int8_t __attribute__ ((__mode__ (__QI__)));
typedef int int16_t __attribute__ ((__mode__ (__HI__)));
typedef int int32_t __attribute__ ((__mode__ (__SI__)));
typedef int int64_t __attribute__ ((__mode__ (__DI__)));
typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__)));
typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__)));
typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__)));
typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__)));
typedef int register_t __attribute__ ((__mode__ (__word__)));
# 217 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/endian.h" 1 3 4
# 37 "/usr/include/endian.h" 3 4
# 1 "/usr/include/bits/endian.h" 1 3 4
# 38 "/usr/include/endian.h" 2 3 4
# 218 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/select.h" 1 3 4
# 31 "/usr/include/sys/select.h" 3 4
# 1 "/usr/include/bits/select.h" 1 3 4
# 32 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/sigset.h" 1 3 4
# 24 "/usr/include/bits/sigset.h" 3 4
typedef int __sig_atomic_t;
typedef struct
{
unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))];
} __sigset_t;
# 35 "/usr/include/sys/select.h" 2 3 4
typedef __sigset_t sigset_t;
# 1 "/usr/include/time.h" 1 3 4
# 121 "/usr/include/time.h" 3 4
struct timespec
{
__time_t tv_sec;
long int tv_nsec;
};
# 45 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/time.h" 1 3 4
# 69 "/usr/include/bits/time.h" 3 4
struct timeval
{
__time_t tv_sec;
__suseconds_t tv_usec;
};
# 47 "/usr/include/sys/select.h" 2 3 4
typedef __suseconds_t suseconds_t;
typedef long int __fd_mask;
# 67 "/usr/include/sys/select.h" 3 4
typedef struct
{
__fd_mask __fds_bits[1024 / (8 * sizeof (__fd_mask))];
} fd_set;
typedef __fd_mask fd_mask;
# 99 "/usr/include/sys/select.h" 3 4
# 109 "/usr/include/sys/select.h" 3 4
extern int select (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
struct timeval *__restrict __timeout);
# 121 "/usr/include/sys/select.h" 3 4
extern int pselect (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
const struct timespec *__restrict __timeout,
const __sigset_t *__restrict __sigmask);
# 221 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/sysmacros.h" 1 3 4
# 30 "/usr/include/sys/sysmacros.h" 3 4
__extension__
extern unsigned int gnu_dev_major (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned int gnu_dev_minor (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned long long int gnu_dev_makedev (unsigned int __major,
unsigned int __minor)
__attribute__ ((__nothrow__));
# 224 "/usr/include/sys/types.h" 2 3 4
# 235 "/usr/include/sys/types.h" 3 4
typedef __blkcnt_t blkcnt_t;
typedef __fsblkcnt_t fsblkcnt_t;
typedef __fsfilcnt_t fsfilcnt_t;
# 270 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/pthreadtypes.h" 1 3 4
# 23 "/usr/include/bits/pthreadtypes.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 24 "/usr/include/bits/pthreadtypes.h" 2 3 4
# 50 "/usr/include/bits/pthreadtypes.h" 3 4
typedef unsigned long int pthread_t;
typedef union
{
char __size[36];
long int __align;
} pthread_attr_t;
# 67 "/usr/include/bits/pthreadtypes.h" 3 4
typedef struct __pthread_internal_slist
{
struct __pthread_internal_slist *__next;
} __pthread_slist_t;
typedef union
{
struct __pthread_mutex_s
{
int __lock;
unsigned int __count;
int __owner;
int __kind;
unsigned int __nusers;
__extension__ union
{
int __spins;
__pthread_slist_t __list;
};
} __data;
char __size[24];
long int __align;
} pthread_mutex_t;
typedef union
{
char __size[4];
int __align;
} pthread_mutexattr_t;
typedef union
{
struct
{
int __lock;
unsigned int __futex;
__extension__ unsigned long long int __total_seq;
__extension__ unsigned long long int __wakeup_seq;
__extension__ unsigned long long int __woken_seq;
void *__mutex;
unsigned int __nwaiters;
unsigned int __broadcast_seq;
} __data;
char __size[48];
__extension__ long long int __align;
} pthread_cond_t;
typedef union
{
char __size[4];
int __align;
} pthread_condattr_t;
typedef unsigned int pthread_key_t;
typedef int pthread_once_t;
typedef union
{
# 170 "/usr/include/bits/pthreadtypes.h" 3 4
struct
{
int __lock;
unsigned int __nr_readers;
unsigned int __readers_wakeup;
unsigned int __writer_wakeup;
unsigned int __nr_readers_queued;
unsigned int __nr_writers_queued;
unsigned char __flags;
unsigned char __shared;
unsigned char __pad1;
unsigned char __pad2;
int __writer;
} __data;
char __size[32];
long int __align;
} pthread_rwlock_t;
typedef union
{
char __size[8];
long int __align;
} pthread_rwlockattr_t;
typedef volatile int pthread_spinlock_t;
typedef union
{
char __size[20];
long int __align;
} pthread_barrier_t;
typedef union
{
char __size[4];
int __align;
} pthread_barrierattr_t;
# 271 "/usr/include/sys/types.h" 2 3 4
# 321 "/usr/include/stdlib.h" 2 3 4
extern long int random (void) __attribute__ ((__nothrow__));
extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__));
extern char *initstate (unsigned int __seed, char *__statebuf,
size_t __statelen) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2)));
extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
struct random_data
{
int32_t *fptr;
int32_t *rptr;
int32_t *state;
int rand_type;
int rand_deg;
int rand_sep;
int32_t *end_ptr;
};
extern int random_r (struct random_data *__restrict __buf,
int32_t *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int srandom_r (unsigned int __seed, struct random_data *__buf)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2)));
extern int initstate_r (unsigned int __seed, char *__restrict __statebuf,
size_t __statelen,
struct random_data *__restrict __buf)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 4)));
extern int setstate_r (char *__restrict __statebuf,
struct random_data *__restrict __buf)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int rand (void) __attribute__ ((__nothrow__));
extern void srand (unsigned int __seed) __attribute__ ((__nothrow__));
extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__));
extern double drand48 (void) __attribute__ ((__nothrow__));
extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern long int lrand48 (void) __attribute__ ((__nothrow__));
extern long int nrand48 (unsigned short int __xsubi[3])
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern long int mrand48 (void) __attribute__ ((__nothrow__));
extern long int jrand48 (unsigned short int __xsubi[3])
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern void srand48 (long int __seedval) __attribute__ ((__nothrow__));
extern unsigned short int *seed48 (unsigned short int __seed16v[3])
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
struct drand48_data
{
unsigned short int __x[3];
unsigned short int __old_x[3];
unsigned short int __c;
unsigned short int __init;
unsigned long long int __a;
};
extern int drand48_r (struct drand48_data *__restrict __buffer,
double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int erand48_r (unsigned short int __xsubi[3],
struct drand48_data *__restrict __buffer,
double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int lrand48_r (struct drand48_data *__restrict __buffer,
long int *__restrict __result)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int nrand48_r (unsigned short int __xsubi[3],
struct drand48_data *__restrict __buffer,
long int *__restrict __result)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int mrand48_r (struct drand48_data *__restrict __buffer,
long int *__restrict __result)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int jrand48_r (unsigned short int __xsubi[3],
struct drand48_data *__restrict __buffer,
long int *__restrict __result)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int srand48_r (long int __seedval, struct drand48_data *__buffer)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2)));
extern int seed48_r (unsigned short int __seed16v[3],
struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int lcong48_r (unsigned short int __param[7],
struct drand48_data *__buffer)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern void *malloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ;
extern void *calloc (size_t __nmemb, size_t __size)
__attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ;
extern void *realloc (void *__ptr, size_t __size)
__attribute__ ((__nothrow__)) __attribute__ ((__warn_unused_result__));
extern void free (void *__ptr) __attribute__ ((__nothrow__));
extern void cfree (void *__ptr) __attribute__ ((__nothrow__));
# 1 "/usr/include/alloca.h" 1 3 4
# 25 "/usr/include/alloca.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 26 "/usr/include/alloca.h" 2 3 4
extern void *alloca (size_t __size) __attribute__ ((__nothrow__));
# 498 "/usr/include/stdlib.h" 2 3 4
extern void *valloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ;
extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern void abort (void) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__));
extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern void exit (int __status) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__));
# 543 "/usr/include/stdlib.h" 3 4
extern char *getenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern char *__secure_getenv (__const char *__name)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern int putenv (char *__string) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int setenv (__const char *__name, __const char *__value, int __replace)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2)));
extern int unsetenv (__const char *__name) __attribute__ ((__nothrow__));
extern int clearenv (void) __attribute__ ((__nothrow__));
# 583 "/usr/include/stdlib.h" 3 4
extern char *mktemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
# 594 "/usr/include/stdlib.h" 3 4
extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ;
# 614 "/usr/include/stdlib.h" 3 4
extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
# 640 "/usr/include/stdlib.h" 3 4
extern int system (__const char *__command) ;
# 662 "/usr/include/stdlib.h" 3 4
extern char *realpath (__const char *__restrict __name,
char *__restrict __resolved) __attribute__ ((__nothrow__)) ;
typedef int (*__compar_fn_t) (__const void *, __const void *);
extern void *bsearch (__const void *__key, __const void *__base,
size_t __nmemb, size_t __size, __compar_fn_t __compar)
__attribute__ ((__nonnull__ (1, 2, 5))) ;
extern void qsort (void *__base, size_t __nmemb, size_t __size,
__compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4)));
extern int abs (int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ;
extern long int labs (long int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ;
extern div_t div (int __numer, int __denom)
__attribute__ ((__nothrow__)) __attribute__ ((__const__)) ;
extern ldiv_t ldiv (long int __numer, long int __denom)
__attribute__ ((__nothrow__)) __attribute__ ((__const__)) ;
# 727 "/usr/include/stdlib.h" 3 4
extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt,
int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ;
extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt,
int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ;
extern char *gcvt (double __value, int __ndigit, char *__buf)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ;
extern char *qecvt (long double __value, int __ndigit,
int *__restrict __decpt, int *__restrict __sign)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ;
extern char *qfcvt (long double __value, int __ndigit,
int *__restrict __decpt, int *__restrict __sign)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ;
extern char *qgcvt (long double __value, int __ndigit, char *__buf)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ;
extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt,
int *__restrict __sign, char *__restrict __buf,
size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5)));
extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt,
int *__restrict __sign, char *__restrict __buf,
size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5)));
extern int qecvt_r (long double __value, int __ndigit,
int *__restrict __decpt, int *__restrict __sign,
char *__restrict __buf, size_t __len)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5)));
extern int qfcvt_r (long double __value, int __ndigit,
int *__restrict __decpt, int *__restrict __sign,
char *__restrict __buf, size_t __len)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5)));
extern int mblen (__const char *__s, size_t __n) __attribute__ ((__nothrow__)) ;
extern int mbtowc (wchar_t *__restrict __pwc,
__const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)) ;
extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__)) ;
extern size_t mbstowcs (wchar_t *__restrict __pwcs,
__const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__));
extern size_t wcstombs (char *__restrict __s,
__const wchar_t *__restrict __pwcs, size_t __n)
__attribute__ ((__nothrow__));
extern int rpmatch (__const char *__response) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
# 832 "/usr/include/stdlib.h" 3 4
extern int posix_openpt (int __oflag) ;
# 867 "/usr/include/stdlib.h" 3 4
extern int getloadavg (double __loadavg[], int __nelem)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 883 "/usr/include/stdlib.h" 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_STDLIB_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: memory.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/memory.h" 1 3 4
# 26 "/usr/include/memory.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 27 "/usr/include/memory.h" 2 3 4
# 1 "/usr/include/string.h" 1 3 4
# 28 "/usr/include/string.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 34 "/usr/include/string.h" 2 3 4
extern void *memcpy (void *__restrict __dest,
__const void *__restrict __src, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern void *memmove (void *__dest, __const void *__src, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern void *memccpy (void *__restrict __dest, __const void *__restrict __src,
int __c, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern void *memset (void *__s, int __c, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int memcmp (__const void *__s1, __const void *__s2, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern void *memchr (__const void *__s, int __c, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1)));
# 82 "/usr/include/string.h" 3 4
extern char *strcpy (char *__restrict __dest, __const char *__restrict __src)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *strncpy (char *__restrict __dest,
__const char *__restrict __src, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *strcat (char *__restrict __dest, __const char *__restrict __src)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *strncat (char *__restrict __dest, __const char *__restrict __src,
size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int strcmp (__const char *__s1, __const char *__s2)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern int strncmp (__const char *__s1, __const char *__s2, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern int strcoll (__const char *__s1, __const char *__s2)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern size_t strxfrm (char *__restrict __dest,
__const char *__restrict __src, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2)));
# 130 "/usr/include/string.h" 3 4
extern char *strdup (__const char *__s)
__attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1)));
# 165 "/usr/include/string.h" 3 4
extern char *strchr (__const char *__s, int __c)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1)));
extern char *strrchr (__const char *__s, int __c)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1)));
# 181 "/usr/include/string.h" 3 4
extern size_t strcspn (__const char *__s, __const char *__reject)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern size_t strspn (__const char *__s, __const char *__accept)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *strpbrk (__const char *__s, __const char *__accept)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *strstr (__const char *__haystack, __const char *__needle)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *strtok (char *__restrict __s, __const char *__restrict __delim)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2)));
extern char *__strtok_r (char *__restrict __s,
__const char *__restrict __delim,
char **__restrict __save_ptr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3)));
extern char *strtok_r (char *__restrict __s, __const char *__restrict __delim,
char **__restrict __save_ptr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3)));
# 240 "/usr/include/string.h" 3 4
extern size_t strlen (__const char *__s)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1)));
# 254 "/usr/include/string.h" 3 4
extern char *strerror (int __errnum) __attribute__ ((__nothrow__));
# 270 "/usr/include/string.h" 3 4
extern int strerror_r (int __errnum, char *__buf, size_t __buflen) __asm__ ("" "__xpg_strerror_r") __attribute__ ((__nothrow__))
__attribute__ ((__nonnull__ (2)));
# 294 "/usr/include/string.h" 3 4
extern void __bzero (void *__s, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern void bcopy (__const void *__src, void *__dest, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int bcmp (__const void *__s1, __const void *__s2, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *index (__const char *__s, int __c)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1)));
extern char *rindex (__const char *__s, int __c)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1)));
extern int ffs (int __i) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
# 331 "/usr/include/string.h" 3 4
extern int strcasecmp (__const char *__s1, __const char *__s2)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
# 354 "/usr/include/string.h" 3 4
extern char *strsep (char **__restrict __stringp,
__const char *__restrict __delim)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
# 432 "/usr/include/string.h" 3 4
# 31 "/usr/include/memory.h" 2 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_MEMORY_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/socket.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/sys/socket.h" 1 3 4
# 24 "/usr/include/sys/socket.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 25 "/usr/include/sys/socket.h" 2 3 4
# 1 "/usr/include/sys/uio.h" 1 3 4
# 24 "/usr/include/sys/uio.h" 3 4
# 1 "/usr/include/sys/types.h" 1 3 4
# 29 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 32 "/usr/include/sys/types.h" 2 3 4
typedef __u_char u_char;
typedef __u_short u_short;
typedef __u_int u_int;
typedef __u_long u_long;
typedef __quad_t quad_t;
typedef __u_quad_t u_quad_t;
typedef __fsid_t fsid_t;
typedef __loff_t loff_t;
typedef __ino_t ino_t;
# 62 "/usr/include/sys/types.h" 3 4
typedef __dev_t dev_t;
typedef __gid_t gid_t;
typedef __mode_t mode_t;
typedef __nlink_t nlink_t;
typedef __uid_t uid_t;
typedef __off_t off_t;
# 100 "/usr/include/sys/types.h" 3 4
typedef __pid_t pid_t;
typedef __id_t id_t;
typedef __ssize_t ssize_t;
typedef __daddr_t daddr_t;
typedef __caddr_t caddr_t;
typedef __key_t key_t;
# 133 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/time.h" 1 3 4
# 75 "/usr/include/time.h" 3 4
typedef __time_t time_t;
# 93 "/usr/include/time.h" 3 4
typedef __clockid_t clockid_t;
# 105 "/usr/include/time.h" 3 4
typedef __timer_t timer_t;
# 134 "/usr/include/sys/types.h" 2 3 4
# 147 "/usr/include/sys/types.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 148 "/usr/include/sys/types.h" 2 3 4
typedef unsigned long int ulong;
typedef unsigned short int ushort;
typedef unsigned int uint;
# 195 "/usr/include/sys/types.h" 3 4
typedef int int8_t __attribute__ ((__mode__ (__QI__)));
typedef int int16_t __attribute__ ((__mode__ (__HI__)));
typedef int int32_t __attribute__ ((__mode__ (__SI__)));
typedef int int64_t __attribute__ ((__mode__ (__DI__)));
typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__)));
typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__)));
typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__)));
typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__)));
typedef int register_t __attribute__ ((__mode__ (__word__)));
# 217 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/endian.h" 1 3 4
# 37 "/usr/include/endian.h" 3 4
# 1 "/usr/include/bits/endian.h" 1 3 4
# 38 "/usr/include/endian.h" 2 3 4
# 218 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/select.h" 1 3 4
# 31 "/usr/include/sys/select.h" 3 4
# 1 "/usr/include/bits/select.h" 1 3 4
# 32 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/sigset.h" 1 3 4
# 24 "/usr/include/bits/sigset.h" 3 4
typedef int __sig_atomic_t;
typedef struct
{
unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))];
} __sigset_t;
# 35 "/usr/include/sys/select.h" 2 3 4
typedef __sigset_t sigset_t;
# 1 "/usr/include/time.h" 1 3 4
# 121 "/usr/include/time.h" 3 4
struct timespec
{
__time_t tv_sec;
long int tv_nsec;
};
# 45 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/time.h" 1 3 4
# 69 "/usr/include/bits/time.h" 3 4
struct timeval
{
__time_t tv_sec;
__suseconds_t tv_usec;
};
# 47 "/usr/include/sys/select.h" 2 3 4
typedef __suseconds_t suseconds_t;
typedef long int __fd_mask;
# 67 "/usr/include/sys/select.h" 3 4
typedef struct
{
__fd_mask __fds_bits[1024 / (8 * sizeof (__fd_mask))];
} fd_set;
typedef __fd_mask fd_mask;
# 99 "/usr/include/sys/select.h" 3 4
# 109 "/usr/include/sys/select.h" 3 4
extern int select (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
struct timeval *__restrict __timeout);
# 121 "/usr/include/sys/select.h" 3 4
extern int pselect (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
const struct timespec *__restrict __timeout,
const __sigset_t *__restrict __sigmask);
# 221 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/sysmacros.h" 1 3 4
# 30 "/usr/include/sys/sysmacros.h" 3 4
__extension__
extern unsigned int gnu_dev_major (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned int gnu_dev_minor (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned long long int gnu_dev_makedev (unsigned int __major,
unsigned int __minor)
__attribute__ ((__nothrow__));
# 224 "/usr/include/sys/types.h" 2 3 4
# 235 "/usr/include/sys/types.h" 3 4
typedef __blkcnt_t blkcnt_t;
typedef __fsblkcnt_t fsblkcnt_t;
typedef __fsfilcnt_t fsfilcnt_t;
# 270 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/pthreadtypes.h" 1 3 4
# 23 "/usr/include/bits/pthreadtypes.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 24 "/usr/include/bits/pthreadtypes.h" 2 3 4
# 50 "/usr/include/bits/pthreadtypes.h" 3 4
typedef unsigned long int pthread_t;
typedef union
{
char __size[36];
long int __align;
} pthread_attr_t;
# 67 "/usr/include/bits/pthreadtypes.h" 3 4
typedef struct __pthread_internal_slist
{
struct __pthread_internal_slist *__next;
} __pthread_slist_t;
typedef union
{
struct __pthread_mutex_s
{
int __lock;
unsigned int __count;
int __owner;
int __kind;
unsigned int __nusers;
__extension__ union
{
int __spins;
__pthread_slist_t __list;
};
} __data;
char __size[24];
long int __align;
} pthread_mutex_t;
typedef union
{
char __size[4];
int __align;
} pthread_mutexattr_t;
typedef union
{
struct
{
int __lock;
unsigned int __futex;
__extension__ unsigned long long int __total_seq;
__extension__ unsigned long long int __wakeup_seq;
__extension__ unsigned long long int __woken_seq;
void *__mutex;
unsigned int __nwaiters;
unsigned int __broadcast_seq;
} __data;
char __size[48];
__extension__ long long int __align;
} pthread_cond_t;
typedef union
{
char __size[4];
int __align;
} pthread_condattr_t;
typedef unsigned int pthread_key_t;
typedef int pthread_once_t;
typedef union
{
# 170 "/usr/include/bits/pthreadtypes.h" 3 4
struct
{
int __lock;
unsigned int __nr_readers;
unsigned int __readers_wakeup;
unsigned int __writer_wakeup;
unsigned int __nr_readers_queued;
unsigned int __nr_writers_queued;
unsigned char __flags;
unsigned char __shared;
unsigned char __pad1;
unsigned char __pad2;
int __writer;
} __data;
char __size[32];
long int __align;
} pthread_rwlock_t;
typedef union
{
char __size[8];
long int __align;
} pthread_rwlockattr_t;
typedef volatile int pthread_spinlock_t;
typedef union
{
char __size[20];
long int __align;
} pthread_barrier_t;
typedef union
{
char __size[4];
int __align;
} pthread_barrierattr_t;
# 271 "/usr/include/sys/types.h" 2 3 4
# 25 "/usr/include/sys/uio.h" 2 3 4
# 1 "/usr/include/bits/uio.h" 1 3 4
# 44 "/usr/include/bits/uio.h" 3 4
struct iovec
{
void *iov_base;
size_t iov_len;
};
# 30 "/usr/include/sys/uio.h" 2 3 4
# 40 "/usr/include/sys/uio.h" 3 4
extern ssize_t readv (int __fd, __const struct iovec *__iovec, int __count);
# 50 "/usr/include/sys/uio.h" 3 4
extern ssize_t writev (int __fd, __const struct iovec *__iovec, int __count);
# 29 "/usr/include/sys/socket.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 31 "/usr/include/sys/socket.h" 2 3 4
# 1 "/usr/include/bits/socket.h" 1 3 4
# 30 "/usr/include/bits/socket.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 31 "/usr/include/bits/socket.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 1 3 4
# 34 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/syslimits.h" 1 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 1 3 4
# 169 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 3 4
# 1 "/usr/include/limits.h" 1 3 4
# 145 "/usr/include/limits.h" 3 4
# 1 "/usr/include/bits/posix1_lim.h" 1 3 4
# 153 "/usr/include/bits/posix1_lim.h" 3 4
# 1 "/usr/include/bits/local_lim.h" 1 3 4
# 36 "/usr/include/bits/local_lim.h" 3 4
# 1 "/usr/include/linux/limits.h" 1 3 4
# 37 "/usr/include/bits/local_lim.h" 2 3 4
# 154 "/usr/include/bits/posix1_lim.h" 2 3 4
# 146 "/usr/include/limits.h" 2 3 4
# 1 "/usr/include/bits/posix2_lim.h" 1 3 4
# 150 "/usr/include/limits.h" 2 3 4
# 170 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 2 3 4
# 8 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/syslimits.h" 2 3 4
# 35 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 2 3 4
# 33 "/usr/include/bits/socket.h" 2 3 4
typedef __socklen_t socklen_t;
enum __socket_type
{
SOCK_STREAM = 1,
SOCK_DGRAM = 2,
SOCK_RAW = 3,
SOCK_RDM = 4,
SOCK_SEQPACKET = 5,
SOCK_PACKET = 10
};
# 147 "/usr/include/bits/socket.h" 3 4
# 1 "/usr/include/bits/sockaddr.h" 1 3 4
# 29 "/usr/include/bits/sockaddr.h" 3 4
typedef unsigned short int sa_family_t;
# 148 "/usr/include/bits/socket.h" 2 3 4
struct sockaddr
{
sa_family_t sa_family;
char sa_data[14];
};
# 167 "/usr/include/bits/socket.h" 3 4
struct sockaddr_storage
{
sa_family_t ss_family;
__uint32_t __ss_align;
char __ss_padding[(128 - (2 * sizeof (__uint32_t)))];
};
enum
{
MSG_OOB = 0x01,
MSG_PEEK = 0x02,
MSG_DONTROUTE = 0x04,
MSG_CTRUNC = 0x08,
MSG_PROXY = 0x10,
MSG_TRUNC = 0x20,
MSG_DONTWAIT = 0x40,
MSG_EOR = 0x80,
MSG_WAITALL = 0x100,
MSG_FIN = 0x200,
MSG_SYN = 0x400,
MSG_CONFIRM = 0x800,
MSG_RST = 0x1000,
MSG_ERRQUEUE = 0x2000,
MSG_NOSIGNAL = 0x4000,
MSG_MORE = 0x8000,
MSG_CMSG_CLOEXEC = 0x40000000
};
struct msghdr
{
void *msg_name;
socklen_t msg_namelen;
struct iovec *msg_iov;
size_t msg_iovlen;
void *msg_control;
size_t msg_controllen;
int msg_flags;
};
struct cmsghdr
{
size_t cmsg_len;
int cmsg_level;
int cmsg_type;
__extension__ unsigned char __cmsg_data [];
};
# 273 "/usr/include/bits/socket.h" 3 4
extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr,
struct cmsghdr *__cmsg) __attribute__ ((__nothrow__));
# 300 "/usr/include/bits/socket.h" 3 4
enum
{
SCM_RIGHTS = 0x01
, SCM_CREDENTIALS = 0x02
};
struct ucred
{
pid_t pid;
uid_t uid;
gid_t gid;
};
# 1 "/usr/include/asm/socket.h" 1 3 4
# 1 "/usr/include/asm/sockios.h" 1 3 4
# 5 "/usr/include/asm/socket.h" 2 3 4
# 321 "/usr/include/bits/socket.h" 2 3 4
struct linger
{
int l_onoff;
int l_linger;
};
# 37 "/usr/include/sys/socket.h" 2 3 4
struct osockaddr
{
unsigned short int sa_family;
unsigned char sa_data[14];
};
enum
{
SHUT_RD = 0,
SHUT_WR,
SHUT_RDWR
};
# 101 "/usr/include/sys/socket.h" 3 4
extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__));
extern int socketpair (int __domain, int __type, int __protocol,
int __fds[2]) __attribute__ ((__nothrow__));
extern int bind (int __fd, __const struct sockaddr * __addr, socklen_t __len)
__attribute__ ((__nothrow__));
extern int getsockname (int __fd, struct sockaddr *__restrict __addr,
socklen_t *__restrict __len) __attribute__ ((__nothrow__));
# 125 "/usr/include/sys/socket.h" 3 4
extern int connect (int __fd, __const struct sockaddr * __addr, socklen_t __len);
extern int getpeername (int __fd, struct sockaddr *__restrict __addr,
socklen_t *__restrict __len) __attribute__ ((__nothrow__));
extern ssize_t send (int __fd, __const void *__buf, size_t __n, int __flags);
extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags);
extern ssize_t sendto (int __fd, __const void *__buf, size_t __n,
int __flags, __const struct sockaddr * __addr,
socklen_t __addr_len);
# 162 "/usr/include/sys/socket.h" 3 4
extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n,
int __flags, struct sockaddr *__restrict __addr,
socklen_t *__restrict __addr_len);
extern ssize_t sendmsg (int __fd, __const struct msghdr *__message,
int __flags);
extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags);
extern int getsockopt (int __fd, int __level, int __optname,
void *__restrict __optval,
socklen_t *__restrict __optlen) __attribute__ ((__nothrow__));
extern int setsockopt (int __fd, int __level, int __optname,
__const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__));
extern int listen (int __fd, int __n) __attribute__ ((__nothrow__));
# 210 "/usr/include/sys/socket.h" 3 4
extern int accept (int __fd, struct sockaddr *__restrict __addr,
socklen_t *__restrict __addr_len);
extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__));
extern int sockatmark (int __fd) __attribute__ ((__nothrow__));
extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__));
# 241 "/usr/include/sys/socket.h" 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_SYS_SOCKET_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/wait.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/sys/wait.h" 1 3 4
# 27 "/usr/include/sys/wait.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 28 "/usr/include/sys/wait.h" 2 3 4
# 1 "/usr/include/signal.h" 1 3 4
# 31 "/usr/include/signal.h" 3 4
# 1 "/usr/include/bits/sigset.h" 1 3 4
# 24 "/usr/include/bits/sigset.h" 3 4
typedef int __sig_atomic_t;
typedef struct
{
unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))];
} __sigset_t;
# 104 "/usr/include/bits/sigset.h" 3 4
extern int __sigismember (__const __sigset_t *, int);
extern int __sigaddset (__sigset_t *, int);
extern int __sigdelset (__sigset_t *, int);
# 34 "/usr/include/signal.h" 2 3 4
typedef __sig_atomic_t sig_atomic_t;
typedef __sigset_t sigset_t;
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 58 "/usr/include/signal.h" 2 3 4
# 1 "/usr/include/bits/signum.h" 1 3 4
# 59 "/usr/include/signal.h" 2 3 4
typedef __pid_t pid_t;
typedef __uid_t uid_t;
typedef void (*__sighandler_t) (int);
extern __sighandler_t __sysv_signal (int __sig, __sighandler_t __handler)
__attribute__ ((__nothrow__));
# 90 "/usr/include/signal.h" 3 4
extern __sighandler_t signal (int __sig, __sighandler_t __handler)
__attribute__ ((__nothrow__));
# 104 "/usr/include/signal.h" 3 4
# 117 "/usr/include/signal.h" 3 4
extern int kill (__pid_t __pid, int __sig) __attribute__ ((__nothrow__));
extern int killpg (__pid_t __pgrp, int __sig) __attribute__ ((__nothrow__));
extern int raise (int __sig) __attribute__ ((__nothrow__));
extern __sighandler_t ssignal (int __sig, __sighandler_t __handler)
__attribute__ ((__nothrow__));
extern int gsignal (int __sig) __attribute__ ((__nothrow__));
extern void psignal (int __sig, __const char *__s);
# 153 "/usr/include/signal.h" 3 4
extern int __sigpause (int __sig_or_mask, int __is_sig);
# 181 "/usr/include/signal.h" 3 4
extern int sigblock (int __mask) __attribute__ ((__nothrow__)) __attribute__ ((__deprecated__));
extern int sigsetmask (int __mask) __attribute__ ((__nothrow__)) __attribute__ ((__deprecated__));
extern int siggetmask (void) __attribute__ ((__nothrow__)) __attribute__ ((__deprecated__));
# 201 "/usr/include/signal.h" 3 4
typedef __sighandler_t sig_t;
# 1 "/usr/include/time.h" 1 3 4
# 121 "/usr/include/time.h" 3 4
struct timespec
{
__time_t tv_sec;
long int tv_nsec;
};
# 210 "/usr/include/signal.h" 2 3 4
# 1 "/usr/include/bits/siginfo.h" 1 3 4
# 25 "/usr/include/bits/siginfo.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 26 "/usr/include/bits/siginfo.h" 2 3 4
typedef union sigval
{
int sival_int;
void *sival_ptr;
} sigval_t;
# 51 "/usr/include/bits/siginfo.h" 3 4
typedef struct siginfo
{
int si_signo;
int si_errno;
int si_code;
union
{
int _pad[((128 / sizeof (int)) - 3)];
struct
{
__pid_t si_pid;
__uid_t si_uid;
} _kill;
struct
{
int si_tid;
int si_overrun;
sigval_t si_sigval;
} _timer;
struct
{
__pid_t si_pid;
__uid_t si_uid;
sigval_t si_sigval;
} _rt;
struct
{
__pid_t si_pid;
__uid_t si_uid;
int si_status;
__clock_t si_utime;
__clock_t si_stime;
} _sigchld;
struct
{
void *si_addr;
} _sigfault;
struct
{
long int si_band;
int si_fd;
} _sigpoll;
} _sifields;
} siginfo_t;
# 129 "/usr/include/bits/siginfo.h" 3 4
enum
{
SI_ASYNCNL = -60,
SI_TKILL = -6,
SI_SIGIO,
SI_ASYNCIO,
SI_MESGQ,
SI_TIMER,
SI_QUEUE,
SI_USER,
SI_KERNEL = 0x80
};
enum
{
ILL_ILLOPC = 1,
ILL_ILLOPN,
ILL_ILLADR,
ILL_ILLTRP,
ILL_PRVOPC,
ILL_PRVREG,
ILL_COPROC,
ILL_BADSTK
};
enum
{
FPE_INTDIV = 1,
FPE_INTOVF,
FPE_FLTDIV,
FPE_FLTOVF,
FPE_FLTUND,
FPE_FLTRES,
FPE_FLTINV,
FPE_FLTSUB
};
enum
{
SEGV_MAPERR = 1,
SEGV_ACCERR
};
enum
{
BUS_ADRALN = 1,
BUS_ADRERR,
BUS_OBJERR
};
enum
{
TRAP_BRKPT = 1,
TRAP_TRACE
};
enum
{
CLD_EXITED = 1,
CLD_KILLED,
CLD_DUMPED,
CLD_TRAPPED,
CLD_STOPPED,
CLD_CONTINUED
};
enum
{
POLL_IN = 1,
POLL_OUT,
POLL_MSG,
POLL_ERR,
POLL_PRI,
POLL_HUP
};
# 273 "/usr/include/bits/siginfo.h" 3 4
typedef struct sigevent
{
sigval_t sigev_value;
int sigev_signo;
int sigev_notify;
union
{
int _pad[((64 / sizeof (int)) - 3)];
__pid_t _tid;
struct
{
void (*_function) (sigval_t);
void *_attribute;
} _sigev_thread;
} _sigev_un;
} sigevent_t;
enum
{
SIGEV_SIGNAL = 0,
SIGEV_NONE,
SIGEV_THREAD,
SIGEV_THREAD_ID = 4
};
# 213 "/usr/include/signal.h" 2 3 4
extern int sigemptyset (sigset_t *__set) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int sigfillset (sigset_t *__set) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int sigaddset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int sigdelset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int sigismember (__const sigset_t *__set, int __signo)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 246 "/usr/include/signal.h" 3 4
# 1 "/usr/include/bits/sigaction.h" 1 3 4
# 25 "/usr/include/bits/sigaction.h" 3 4
struct sigaction
{
union
{
__sighandler_t sa_handler;
void (*sa_sigaction) (int, siginfo_t *, void *);
}
__sigaction_handler;
__sigset_t sa_mask;
int sa_flags;
void (*sa_restorer) (void);
};
# 247 "/usr/include/signal.h" 2 3 4
extern int sigprocmask (int __how, __const sigset_t *__restrict __set,
sigset_t *__restrict __oset) __attribute__ ((__nothrow__));
extern int sigsuspend (__const sigset_t *__set) __attribute__ ((__nonnull__ (1)));
extern int sigaction (int __sig, __const struct sigaction *__restrict __act,
struct sigaction *__restrict __oact) __attribute__ ((__nothrow__));
extern int sigpending (sigset_t *__set) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int sigwait (__const sigset_t *__restrict __set, int *__restrict __sig)
__attribute__ ((__nonnull__ (1, 2)));
extern int sigwaitinfo (__const sigset_t *__restrict __set,
siginfo_t *__restrict __info) __attribute__ ((__nonnull__ (1)));
extern int sigtimedwait (__const sigset_t *__restrict __set,
siginfo_t *__restrict __info,
__const struct timespec *__restrict __timeout)
__attribute__ ((__nonnull__ (1)));
extern int sigqueue (__pid_t __pid, int __sig, __const union sigval __val)
__attribute__ ((__nothrow__));
# 304 "/usr/include/signal.h" 3 4
extern __const char *__const _sys_siglist[65];
extern __const char *__const sys_siglist[65];
struct sigvec
{
__sighandler_t sv_handler;
int sv_mask;
int sv_flags;
};
# 328 "/usr/include/signal.h" 3 4
extern int sigvec (int __sig, __const struct sigvec *__vec,
struct sigvec *__ovec) __attribute__ ((__nothrow__));
# 1 "/usr/include/bits/sigcontext.h" 1 3 4
# 26 "/usr/include/bits/sigcontext.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 27 "/usr/include/bits/sigcontext.h" 2 3 4
struct _fpreg
{
unsigned short significand[4];
unsigned short exponent;
};
struct _fpxreg
{
unsigned short significand[4];
unsigned short exponent;
unsigned short padding[3];
};
struct _xmmreg
{
__uint32_t element[4];
};
struct _fpstate
{
__uint32_t cw;
__uint32_t sw;
__uint32_t tag;
__uint32_t ipoff;
__uint32_t cssel;
__uint32_t dataoff;
__uint32_t datasel;
struct _fpreg _st[8];
unsigned short status;
unsigned short magic;
__uint32_t _fxsr_env[6];
__uint32_t mxcsr;
__uint32_t reserved;
struct _fpxreg _fxsr_st[8];
struct _xmmreg _xmm[8];
__uint32_t padding[56];
};
# 81 "/usr/include/bits/sigcontext.h" 3 4
struct sigcontext
{
unsigned short gs, __gsh;
unsigned short fs, __fsh;
unsigned short es, __esh;
unsigned short ds, __dsh;
unsigned long edi;
unsigned long esi;
unsigned long ebp;
unsigned long esp;
unsigned long ebx;
unsigned long edx;
unsigned long ecx;
unsigned long eax;
unsigned long trapno;
unsigned long err;
unsigned long eip;
unsigned short cs, __csh;
unsigned long eflags;
unsigned long esp_at_signal;
unsigned short ss, __ssh;
struct _fpstate * fpstate;
unsigned long oldmask;
unsigned long cr2;
};
# 334 "/usr/include/signal.h" 2 3 4
extern int sigreturn (struct sigcontext *__scp) __attribute__ ((__nothrow__));
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 344 "/usr/include/signal.h" 2 3 4
extern int siginterrupt (int __sig, int __interrupt) __attribute__ ((__nothrow__));
# 1 "/usr/include/bits/sigstack.h" 1 3 4
# 26 "/usr/include/bits/sigstack.h" 3 4
struct sigstack
{
void *ss_sp;
int ss_onstack;
};
enum
{
SS_ONSTACK = 1,
SS_DISABLE
};
# 50 "/usr/include/bits/sigstack.h" 3 4
typedef struct sigaltstack
{
void *ss_sp;
int ss_flags;
size_t ss_size;
} stack_t;
# 351 "/usr/include/signal.h" 2 3 4
# 359 "/usr/include/signal.h" 3 4
extern int sigstack (struct sigstack *__ss, struct sigstack *__oss)
__attribute__ ((__nothrow__)) __attribute__ ((__deprecated__));
extern int sigaltstack (__const struct sigaltstack *__restrict __ss,
struct sigaltstack *__restrict __oss) __attribute__ ((__nothrow__));
# 388 "/usr/include/signal.h" 3 4
# 1 "/usr/include/bits/pthreadtypes.h" 1 3 4
# 23 "/usr/include/bits/pthreadtypes.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 24 "/usr/include/bits/pthreadtypes.h" 2 3 4
# 50 "/usr/include/bits/pthreadtypes.h" 3 4
typedef unsigned long int pthread_t;
typedef union
{
char __size[36];
long int __align;
} pthread_attr_t;
# 67 "/usr/include/bits/pthreadtypes.h" 3 4
typedef struct __pthread_internal_slist
{
struct __pthread_internal_slist *__next;
} __pthread_slist_t;
typedef union
{
struct __pthread_mutex_s
{
int __lock;
unsigned int __count;
int __owner;
int __kind;
unsigned int __nusers;
__extension__ union
{
int __spins;
__pthread_slist_t __list;
};
} __data;
char __size[24];
long int __align;
} pthread_mutex_t;
typedef union
{
char __size[4];
int __align;
} pthread_mutexattr_t;
typedef union
{
struct
{
int __lock;
unsigned int __futex;
__extension__ unsigned long long int __total_seq;
__extension__ unsigned long long int __wakeup_seq;
__extension__ unsigned long long int __woken_seq;
void *__mutex;
unsigned int __nwaiters;
unsigned int __broadcast_seq;
} __data;
char __size[48];
__extension__ long long int __align;
} pthread_cond_t;
typedef union
{
char __size[4];
int __align;
} pthread_condattr_t;
typedef unsigned int pthread_key_t;
typedef int pthread_once_t;
typedef union
{
# 170 "/usr/include/bits/pthreadtypes.h" 3 4
struct
{
int __lock;
unsigned int __nr_readers;
unsigned int __readers_wakeup;
unsigned int __writer_wakeup;
unsigned int __nr_readers_queued;
unsigned int __nr_writers_queued;
unsigned char __flags;
unsigned char __shared;
unsigned char __pad1;
unsigned char __pad2;
int __writer;
} __data;
char __size[32];
long int __align;
} pthread_rwlock_t;
typedef union
{
char __size[8];
long int __align;
} pthread_rwlockattr_t;
typedef volatile int pthread_spinlock_t;
typedef union
{
char __size[20];
long int __align;
} pthread_barrier_t;
typedef union
{
char __size[4];
int __align;
} pthread_barrierattr_t;
# 389 "/usr/include/signal.h" 2 3 4
# 1 "/usr/include/bits/sigthread.h" 1 3 4
# 31 "/usr/include/bits/sigthread.h" 3 4
extern int pthread_sigmask (int __how,
__const __sigset_t *__restrict __newmask,
__sigset_t *__restrict __oldmask)__attribute__ ((__nothrow__));
extern int pthread_kill (pthread_t __threadid, int __signo) __attribute__ ((__nothrow__));
# 390 "/usr/include/signal.h" 2 3 4
extern int __libc_current_sigrtmin (void) __attribute__ ((__nothrow__));
extern int __libc_current_sigrtmax (void) __attribute__ ((__nothrow__));
# 32 "/usr/include/sys/wait.h" 2 3 4
# 1 "/usr/include/sys/resource.h" 1 3 4
# 25 "/usr/include/sys/resource.h" 3 4
# 1 "/usr/include/bits/resource.h" 1 3 4
# 33 "/usr/include/bits/resource.h" 3 4
enum __rlimit_resource
{
RLIMIT_CPU = 0,
RLIMIT_FSIZE = 1,
RLIMIT_DATA = 2,
RLIMIT_STACK = 3,
RLIMIT_CORE = 4,
__RLIMIT_RSS = 5,
RLIMIT_NOFILE = 7,
__RLIMIT_OFILE = RLIMIT_NOFILE,
RLIMIT_AS = 9,
__RLIMIT_NPROC = 6,
__RLIMIT_MEMLOCK = 8,
__RLIMIT_LOCKS = 10,
__RLIMIT_SIGPENDING = 11,
__RLIMIT_MSGQUEUE = 12,
__RLIMIT_NICE = 13,
__RLIMIT_RTPRIO = 14,
__RLIMIT_NLIMITS = 15,
__RLIM_NLIMITS = __RLIMIT_NLIMITS
};
# 127 "/usr/include/bits/resource.h" 3 4
typedef __rlim_t rlim_t;
struct rlimit
{
rlim_t rlim_cur;
rlim_t rlim_max;
};
# 154 "/usr/include/bits/resource.h" 3 4
enum __rusage_who
{
RUSAGE_SELF = 0,
RUSAGE_CHILDREN = -1
};
# 1 "/usr/include/bits/time.h" 1 3 4
# 69 "/usr/include/bits/time.h" 3 4
struct timeval
{
__time_t tv_sec;
__suseconds_t tv_usec;
};
# 167 "/usr/include/bits/resource.h" 2 3 4
struct rusage
{
struct timeval ru_utime;
struct timeval ru_stime;
long int ru_maxrss;
long int ru_ixrss;
long int ru_idrss;
long int ru_isrss;
long int ru_minflt;
long int ru_majflt;
long int ru_nswap;
long int ru_inblock;
long int ru_oublock;
long int ru_msgsnd;
long int ru_msgrcv;
long int ru_nsignals;
long int ru_nvcsw;
long int ru_nivcsw;
};
enum __priority_which
{
PRIO_PROCESS = 0,
PRIO_PGRP = 1,
PRIO_USER = 2
};
# 26 "/usr/include/sys/resource.h" 2 3 4
typedef __id_t id_t;
# 43 "/usr/include/sys/resource.h" 3 4
typedef int __rlimit_resource_t;
typedef int __rusage_who_t;
typedef int __priority_which_t;
extern int getrlimit (__rlimit_resource_t __resource,
struct rlimit *__rlimits) __attribute__ ((__nothrow__));
# 70 "/usr/include/sys/resource.h" 3 4
extern int setrlimit (__rlimit_resource_t __resource,
__const struct rlimit *__rlimits) __attribute__ ((__nothrow__));
# 88 "/usr/include/sys/resource.h" 3 4
extern int getrusage (__rusage_who_t __who, struct rusage *__usage) __attribute__ ((__nothrow__));
extern int getpriority (__priority_which_t __which, id_t __who) __attribute__ ((__nothrow__));
extern int setpriority (__priority_which_t __which, id_t __who, int __prio)
__attribute__ ((__nothrow__));
# 33 "/usr/include/sys/wait.h" 2 3 4
# 1 "/usr/include/bits/waitflags.h" 1 3 4
# 39 "/usr/include/sys/wait.h" 2 3 4
# 63 "/usr/include/sys/wait.h" 3 4
typedef union
{
union wait *__uptr;
int *__iptr;
} __WAIT_STATUS __attribute__ ((__transparent_union__));
# 80 "/usr/include/sys/wait.h" 3 4
# 1 "/usr/include/bits/waitstatus.h" 1 3 4
# 65 "/usr/include/bits/waitstatus.h" 3 4
# 1 "/usr/include/endian.h" 1 3 4
# 37 "/usr/include/endian.h" 3 4
# 1 "/usr/include/bits/endian.h" 1 3 4
# 38 "/usr/include/endian.h" 2 3 4
# 66 "/usr/include/bits/waitstatus.h" 2 3 4
union wait
{
int w_status;
struct
{
unsigned int __w_termsig:7;
unsigned int __w_coredump:1;
unsigned int __w_retcode:8;
unsigned int:16;
} __wait_terminated;
struct
{
unsigned int __w_stopval:8;
unsigned int __w_stopsig:8;
unsigned int:16;
} __wait_stopped;
};
# 81 "/usr/include/sys/wait.h" 2 3 4
# 102 "/usr/include/sys/wait.h" 3 4
typedef enum
{
P_ALL,
P_PID,
P_PGID
} idtype_t;
# 116 "/usr/include/sys/wait.h" 3 4
extern __pid_t wait (__WAIT_STATUS __stat_loc);
# 139 "/usr/include/sys/wait.h" 3 4
extern __pid_t waitpid (__pid_t __pid, int *__stat_loc, int __options);
# 1 "/usr/include/bits/siginfo.h" 1 3 4
# 25 "/usr/include/bits/siginfo.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 26 "/usr/include/bits/siginfo.h" 2 3 4
# 144 "/usr/include/sys/wait.h" 2 3 4
# 155 "/usr/include/sys/wait.h" 3 4
extern int waitid (idtype_t __idtype, __id_t __id, siginfo_t *__infop,
int __options);
struct rusage;
extern __pid_t wait3 (__WAIT_STATUS __stat_loc, int __options,
struct rusage * __usage) __attribute__ ((__nothrow__));
extern __pid_t wait4 (__pid_t __pid, __WAIT_STATUS __stat_loc, int __options,
struct rusage *__usage) __attribute__ ((__nothrow__));
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_SYS_WAIT_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: netinet/in.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/netinet/in.h" 1 3 4
# 23 "/usr/include/netinet/in.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 24 "/usr/include/netinet/in.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stdint.h" 1 3 4
# 1 "/usr/include/stdint.h" 1 3 4
# 27 "/usr/include/stdint.h" 3 4
# 1 "/usr/include/bits/wchar.h" 1 3 4
# 28 "/usr/include/stdint.h" 2 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/stdint.h" 2 3 4
# 37 "/usr/include/stdint.h" 3 4
typedef signed char int8_t;
typedef short int int16_t;
typedef int int32_t;
__extension__
typedef long long int int64_t;
typedef unsigned char uint8_t;
typedef unsigned short int uint16_t;
typedef unsigned int uint32_t;
__extension__
typedef unsigned long long int uint64_t;
typedef signed char int_least8_t;
typedef short int int_least16_t;
typedef int int_least32_t;
__extension__
typedef long long int int_least64_t;
typedef unsigned char uint_least8_t;
typedef unsigned short int uint_least16_t;
typedef unsigned int uint_least32_t;
__extension__
typedef unsigned long long int uint_least64_t;
typedef signed char int_fast8_t;
typedef int int_fast16_t;
typedef int int_fast32_t;
__extension__
typedef long long int int_fast64_t;
typedef unsigned char uint_fast8_t;
typedef unsigned int uint_fast16_t;
typedef unsigned int uint_fast32_t;
__extension__
typedef unsigned long long int uint_fast64_t;
# 126 "/usr/include/stdint.h" 3 4
typedef int intptr_t;
typedef unsigned int uintptr_t;
# 138 "/usr/include/stdint.h" 3 4
__extension__
typedef long long int intmax_t;
__extension__
typedef unsigned long long int uintmax_t;
# 4 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stdint.h" 2 3 4
# 25 "/usr/include/netinet/in.h" 2 3 4
# 1 "/usr/include/sys/socket.h" 1 3 4
# 26 "/usr/include/sys/socket.h" 3 4
# 1 "/usr/include/sys/uio.h" 1 3 4
# 24 "/usr/include/sys/uio.h" 3 4
# 1 "/usr/include/sys/types.h" 1 3 4
# 29 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 32 "/usr/include/sys/types.h" 2 3 4
typedef __u_char u_char;
typedef __u_short u_short;
typedef __u_int u_int;
typedef __u_long u_long;
typedef __quad_t quad_t;
typedef __u_quad_t u_quad_t;
typedef __fsid_t fsid_t;
typedef __loff_t loff_t;
typedef __ino_t ino_t;
# 62 "/usr/include/sys/types.h" 3 4
typedef __dev_t dev_t;
typedef __gid_t gid_t;
typedef __mode_t mode_t;
typedef __nlink_t nlink_t;
typedef __uid_t uid_t;
typedef __off_t off_t;
# 100 "/usr/include/sys/types.h" 3 4
typedef __pid_t pid_t;
typedef __id_t id_t;
typedef __ssize_t ssize_t;
typedef __daddr_t daddr_t;
typedef __caddr_t caddr_t;
typedef __key_t key_t;
# 133 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/time.h" 1 3 4
# 75 "/usr/include/time.h" 3 4
typedef __time_t time_t;
# 93 "/usr/include/time.h" 3 4
typedef __clockid_t clockid_t;
# 105 "/usr/include/time.h" 3 4
typedef __timer_t timer_t;
# 134 "/usr/include/sys/types.h" 2 3 4
# 147 "/usr/include/sys/types.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 148 "/usr/include/sys/types.h" 2 3 4
typedef unsigned long int ulong;
typedef unsigned short int ushort;
typedef unsigned int uint;
# 201 "/usr/include/sys/types.h" 3 4
typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__)));
typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__)));
typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__)));
typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__)));
typedef int register_t __attribute__ ((__mode__ (__word__)));
# 217 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/endian.h" 1 3 4
# 37 "/usr/include/endian.h" 3 4
# 1 "/usr/include/bits/endian.h" 1 3 4
# 38 "/usr/include/endian.h" 2 3 4
# 218 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/select.h" 1 3 4
# 31 "/usr/include/sys/select.h" 3 4
# 1 "/usr/include/bits/select.h" 1 3 4
# 32 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/sigset.h" 1 3 4
# 24 "/usr/include/bits/sigset.h" 3 4
typedef int __sig_atomic_t;
typedef struct
{
unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))];
} __sigset_t;
# 35 "/usr/include/sys/select.h" 2 3 4
typedef __sigset_t sigset_t;
# 1 "/usr/include/time.h" 1 3 4
# 121 "/usr/include/time.h" 3 4
struct timespec
{
__time_t tv_sec;
long int tv_nsec;
};
# 45 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/time.h" 1 3 4
# 69 "/usr/include/bits/time.h" 3 4
struct timeval
{
__time_t tv_sec;
__suseconds_t tv_usec;
};
# 47 "/usr/include/sys/select.h" 2 3 4
typedef __suseconds_t suseconds_t;
typedef long int __fd_mask;
# 67 "/usr/include/sys/select.h" 3 4
typedef struct
{
__fd_mask __fds_bits[1024 / (8 * sizeof (__fd_mask))];
} fd_set;
typedef __fd_mask fd_mask;
# 99 "/usr/include/sys/select.h" 3 4
# 109 "/usr/include/sys/select.h" 3 4
extern int select (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
struct timeval *__restrict __timeout);
# 121 "/usr/include/sys/select.h" 3 4
extern int pselect (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
const struct timespec *__restrict __timeout,
const __sigset_t *__restrict __sigmask);
# 221 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/sysmacros.h" 1 3 4
# 30 "/usr/include/sys/sysmacros.h" 3 4
__extension__
extern unsigned int gnu_dev_major (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned int gnu_dev_minor (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned long long int gnu_dev_makedev (unsigned int __major,
unsigned int __minor)
__attribute__ ((__nothrow__));
# 224 "/usr/include/sys/types.h" 2 3 4
# 235 "/usr/include/sys/types.h" 3 4
typedef __blkcnt_t blkcnt_t;
typedef __fsblkcnt_t fsblkcnt_t;
typedef __fsfilcnt_t fsfilcnt_t;
# 270 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/pthreadtypes.h" 1 3 4
# 23 "/usr/include/bits/pthreadtypes.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 24 "/usr/include/bits/pthreadtypes.h" 2 3 4
# 50 "/usr/include/bits/pthreadtypes.h" 3 4
typedef unsigned long int pthread_t;
typedef union
{
char __size[36];
long int __align;
} pthread_attr_t;
# 67 "/usr/include/bits/pthreadtypes.h" 3 4
typedef struct __pthread_internal_slist
{
struct __pthread_internal_slist *__next;
} __pthread_slist_t;
typedef union
{
struct __pthread_mutex_s
{
int __lock;
unsigned int __count;
int __owner;
int __kind;
unsigned int __nusers;
__extension__ union
{
int __spins;
__pthread_slist_t __list;
};
} __data;
char __size[24];
long int __align;
} pthread_mutex_t;
typedef union
{
char __size[4];
int __align;
} pthread_mutexattr_t;
typedef union
{
struct
{
int __lock;
unsigned int __futex;
__extension__ unsigned long long int __total_seq;
__extension__ unsigned long long int __wakeup_seq;
__extension__ unsigned long long int __woken_seq;
void *__mutex;
unsigned int __nwaiters;
unsigned int __broadcast_seq;
} __data;
char __size[48];
__extension__ long long int __align;
} pthread_cond_t;
typedef union
{
char __size[4];
int __align;
} pthread_condattr_t;
typedef unsigned int pthread_key_t;
typedef int pthread_once_t;
typedef union
{
# 170 "/usr/include/bits/pthreadtypes.h" 3 4
struct
{
int __lock;
unsigned int __nr_readers;
unsigned int __readers_wakeup;
unsigned int __writer_wakeup;
unsigned int __nr_readers_queued;
unsigned int __nr_writers_queued;
unsigned char __flags;
unsigned char __shared;
unsigned char __pad1;
unsigned char __pad2;
int __writer;
} __data;
char __size[32];
long int __align;
} pthread_rwlock_t;
typedef union
{
char __size[8];
long int __align;
} pthread_rwlockattr_t;
typedef volatile int pthread_spinlock_t;
typedef union
{
char __size[20];
long int __align;
} pthread_barrier_t;
typedef union
{
char __size[4];
int __align;
} pthread_barrierattr_t;
# 271 "/usr/include/sys/types.h" 2 3 4
# 25 "/usr/include/sys/uio.h" 2 3 4
# 1 "/usr/include/bits/uio.h" 1 3 4
# 44 "/usr/include/bits/uio.h" 3 4
struct iovec
{
void *iov_base;
size_t iov_len;
};
# 30 "/usr/include/sys/uio.h" 2 3 4
# 40 "/usr/include/sys/uio.h" 3 4
extern ssize_t readv (int __fd, __const struct iovec *__iovec, int __count);
# 50 "/usr/include/sys/uio.h" 3 4
extern ssize_t writev (int __fd, __const struct iovec *__iovec, int __count);
# 29 "/usr/include/sys/socket.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 31 "/usr/include/sys/socket.h" 2 3 4
# 1 "/usr/include/bits/socket.h" 1 3 4
# 30 "/usr/include/bits/socket.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 31 "/usr/include/bits/socket.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 1 3 4
# 34 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/syslimits.h" 1 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 1 3 4
# 169 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 3 4
# 1 "/usr/include/limits.h" 1 3 4
# 145 "/usr/include/limits.h" 3 4
# 1 "/usr/include/bits/posix1_lim.h" 1 3 4
# 153 "/usr/include/bits/posix1_lim.h" 3 4
# 1 "/usr/include/bits/local_lim.h" 1 3 4
# 36 "/usr/include/bits/local_lim.h" 3 4
# 1 "/usr/include/linux/limits.h" 1 3 4
# 37 "/usr/include/bits/local_lim.h" 2 3 4
# 154 "/usr/include/bits/posix1_lim.h" 2 3 4
# 146 "/usr/include/limits.h" 2 3 4
# 1 "/usr/include/bits/posix2_lim.h" 1 3 4
# 150 "/usr/include/limits.h" 2 3 4
# 170 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 2 3 4
# 8 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/syslimits.h" 2 3 4
# 35 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 2 3 4
# 33 "/usr/include/bits/socket.h" 2 3 4
typedef __socklen_t socklen_t;
enum __socket_type
{
SOCK_STREAM = 1,
SOCK_DGRAM = 2,
SOCK_RAW = 3,
SOCK_RDM = 4,
SOCK_SEQPACKET = 5,
SOCK_PACKET = 10
};
# 147 "/usr/include/bits/socket.h" 3 4
# 1 "/usr/include/bits/sockaddr.h" 1 3 4
# 29 "/usr/include/bits/sockaddr.h" 3 4
typedef unsigned short int sa_family_t;
# 148 "/usr/include/bits/socket.h" 2 3 4
struct sockaddr
{
sa_family_t sa_family;
char sa_data[14];
};
# 167 "/usr/include/bits/socket.h" 3 4
struct sockaddr_storage
{
sa_family_t ss_family;
__uint32_t __ss_align;
char __ss_padding[(128 - (2 * sizeof (__uint32_t)))];
};
enum
{
MSG_OOB = 0x01,
MSG_PEEK = 0x02,
MSG_DONTROUTE = 0x04,
MSG_CTRUNC = 0x08,
MSG_PROXY = 0x10,
MSG_TRUNC = 0x20,
MSG_DONTWAIT = 0x40,
MSG_EOR = 0x80,
MSG_WAITALL = 0x100,
MSG_FIN = 0x200,
MSG_SYN = 0x400,
MSG_CONFIRM = 0x800,
MSG_RST = 0x1000,
MSG_ERRQUEUE = 0x2000,
MSG_NOSIGNAL = 0x4000,
MSG_MORE = 0x8000,
MSG_CMSG_CLOEXEC = 0x40000000
};
struct msghdr
{
void *msg_name;
socklen_t msg_namelen;
struct iovec *msg_iov;
size_t msg_iovlen;
void *msg_control;
size_t msg_controllen;
int msg_flags;
};
struct cmsghdr
{
size_t cmsg_len;
int cmsg_level;
int cmsg_type;
__extension__ unsigned char __cmsg_data [];
};
# 273 "/usr/include/bits/socket.h" 3 4
extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr,
struct cmsghdr *__cmsg) __attribute__ ((__nothrow__));
# 300 "/usr/include/bits/socket.h" 3 4
enum
{
SCM_RIGHTS = 0x01
, SCM_CREDENTIALS = 0x02
};
struct ucred
{
pid_t pid;
uid_t uid;
gid_t gid;
};
# 1 "/usr/include/asm/socket.h" 1 3 4
# 1 "/usr/include/asm/sockios.h" 1 3 4
# 5 "/usr/include/asm/socket.h" 2 3 4
# 321 "/usr/include/bits/socket.h" 2 3 4
struct linger
{
int l_onoff;
int l_linger;
};
# 37 "/usr/include/sys/socket.h" 2 3 4
struct osockaddr
{
unsigned short int sa_family;
unsigned char sa_data[14];
};
enum
{
SHUT_RD = 0,
SHUT_WR,
SHUT_RDWR
};
# 101 "/usr/include/sys/socket.h" 3 4
extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__));
extern int socketpair (int __domain, int __type, int __protocol,
int __fds[2]) __attribute__ ((__nothrow__));
extern int bind (int __fd, __const struct sockaddr * __addr, socklen_t __len)
__attribute__ ((__nothrow__));
extern int getsockname (int __fd, struct sockaddr *__restrict __addr,
socklen_t *__restrict __len) __attribute__ ((__nothrow__));
# 125 "/usr/include/sys/socket.h" 3 4
extern int connect (int __fd, __const struct sockaddr * __addr, socklen_t __len);
extern int getpeername (int __fd, struct sockaddr *__restrict __addr,
socklen_t *__restrict __len) __attribute__ ((__nothrow__));
extern ssize_t send (int __fd, __const void *__buf, size_t __n, int __flags);
extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags);
extern ssize_t sendto (int __fd, __const void *__buf, size_t __n,
int __flags, __const struct sockaddr * __addr,
socklen_t __addr_len);
# 162 "/usr/include/sys/socket.h" 3 4
extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n,
int __flags, struct sockaddr *__restrict __addr,
socklen_t *__restrict __addr_len);
extern ssize_t sendmsg (int __fd, __const struct msghdr *__message,
int __flags);
extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags);
extern int getsockopt (int __fd, int __level, int __optname,
void *__restrict __optval,
socklen_t *__restrict __optlen) __attribute__ ((__nothrow__));
extern int setsockopt (int __fd, int __level, int __optname,
__const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__));
extern int listen (int __fd, int __n) __attribute__ ((__nothrow__));
# 210 "/usr/include/sys/socket.h" 3 4
extern int accept (int __fd, struct sockaddr *__restrict __addr,
socklen_t *__restrict __addr_len);
extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__));
extern int sockatmark (int __fd) __attribute__ ((__nothrow__));
extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__));
# 241 "/usr/include/sys/socket.h" 3 4
# 26 "/usr/include/netinet/in.h" 2 3 4
enum
{
IPPROTO_IP = 0,
IPPROTO_HOPOPTS = 0,
IPPROTO_ICMP = 1,
IPPROTO_IGMP = 2,
IPPROTO_IPIP = 4,
IPPROTO_TCP = 6,
IPPROTO_EGP = 8,
IPPROTO_PUP = 12,
IPPROTO_UDP = 17,
IPPROTO_IDP = 22,
IPPROTO_TP = 29,
IPPROTO_IPV6 = 41,
IPPROTO_ROUTING = 43,
IPPROTO_FRAGMENT = 44,
IPPROTO_RSVP = 46,
IPPROTO_GRE = 47,
IPPROTO_ESP = 50,
IPPROTO_AH = 51,
IPPROTO_ICMPV6 = 58,
IPPROTO_NONE = 59,
IPPROTO_DSTOPTS = 60,
IPPROTO_MTP = 92,
IPPROTO_ENCAP = 98,
IPPROTO_PIM = 103,
IPPROTO_COMP = 108,
IPPROTO_SCTP = 132,
IPPROTO_RAW = 255,
IPPROTO_MAX
};
typedef uint16_t in_port_t;
enum
{
IPPORT_ECHO = 7,
IPPORT_DISCARD = 9,
IPPORT_SYSTAT = 11,
IPPORT_DAYTIME = 13,
IPPORT_NETSTAT = 15,
IPPORT_FTP = 21,
IPPORT_TELNET = 23,
IPPORT_SMTP = 25,
IPPORT_TIMESERVER = 37,
IPPORT_NAMESERVER = 42,
IPPORT_WHOIS = 43,
IPPORT_MTP = 57,
IPPORT_TFTP = 69,
IPPORT_RJE = 77,
IPPORT_FINGER = 79,
IPPORT_TTYLINK = 87,
IPPORT_SUPDUP = 95,
IPPORT_EXECSERVER = 512,
IPPORT_LOGINSERVER = 513,
IPPORT_CMDSERVER = 514,
IPPORT_EFSSERVER = 520,
IPPORT_BIFFUDP = 512,
IPPORT_WHOSERVER = 513,
IPPORT_ROUTESERVER = 520,
IPPORT_RESERVED = 1024,
IPPORT_USERRESERVED = 5000
};
typedef uint32_t in_addr_t;
struct in_addr
{
in_addr_t s_addr;
};
# 194 "/usr/include/netinet/in.h" 3 4
struct in6_addr
{
union
{
uint8_t u6_addr8[16];
uint16_t u6_addr16[8];
uint32_t u6_addr32[4];
} in6_u;
};
extern const struct in6_addr in6addr_any;
extern const struct in6_addr in6addr_loopback;
# 217 "/usr/include/netinet/in.h" 3 4
struct sockaddr_in
{
sa_family_t sin_family;
in_port_t sin_port;
struct in_addr sin_addr;
unsigned char sin_zero[sizeof (struct sockaddr) -
(sizeof (unsigned short int)) -
sizeof (in_port_t) -
sizeof (struct in_addr)];
};
struct sockaddr_in6
{
sa_family_t sin6_family;
in_port_t sin6_port;
uint32_t sin6_flowinfo;
struct in6_addr sin6_addr;
uint32_t sin6_scope_id;
};
struct ip_mreq
{
struct in_addr imr_multiaddr;
struct in_addr imr_interface;
};
struct ip_mreq_source
{
struct in_addr imr_multiaddr;
struct in_addr imr_interface;
struct in_addr imr_sourceaddr;
};
struct ipv6_mreq
{
struct in6_addr ipv6mr_multiaddr;
unsigned int ipv6mr_interface;
};
struct group_req
{
uint32_t gr_interface;
struct sockaddr_storage gr_group;
};
struct group_source_req
{
uint32_t gsr_interface;
struct sockaddr_storage gsr_group;
struct sockaddr_storage gsr_source;
};
struct ip_msfilter
{
struct in_addr imsf_multiaddr;
struct in_addr imsf_interface;
uint32_t imsf_fmode;
uint32_t imsf_numsrc;
struct in_addr imsf_slist[1];
};
struct group_filter
{
uint32_t gf_interface;
struct sockaddr_storage gf_group;
uint32_t gf_fmode;
uint32_t gf_numsrc;
struct sockaddr_storage gf_slist[1];
};
# 343 "/usr/include/netinet/in.h" 3 4
# 1 "/usr/include/bits/in.h" 1 3 4
# 82 "/usr/include/bits/in.h" 3 4
struct ip_opts
{
struct in_addr ip_dst;
char ip_opts[40];
};
struct ip_mreqn
{
struct in_addr imr_multiaddr;
struct in_addr imr_address;
int imr_ifindex;
};
struct in_pktinfo
{
int ipi_ifindex;
struct in_addr ipi_spec_dst;
struct in_addr ipi_addr;
};
# 344 "/usr/include/netinet/in.h" 2 3 4
# 352 "/usr/include/netinet/in.h" 3 4
extern uint32_t ntohl (uint32_t __netlong) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern uint16_t ntohs (uint16_t __netshort)
__attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern uint32_t htonl (uint32_t __hostlong)
__attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern uint16_t htons (uint16_t __hostshort)
__attribute__ ((__nothrow__)) __attribute__ ((__const__));
# 1 "/usr/include/bits/byteswap.h" 1 3 4
# 28 "/usr/include/bits/byteswap.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/byteswap.h" 2 3 4
# 364 "/usr/include/netinet/in.h" 2 3 4
# 426 "/usr/include/netinet/in.h" 3 4
extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) __attribute__ ((__nothrow__));
extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in)
__attribute__ ((__nothrow__));
# 454 "/usr/include/netinet/in.h" 3 4
struct in6_pktinfo
{
struct in6_addr ipi6_addr;
unsigned int ipi6_ifindex;
};
struct ip6_mtuinfo
{
struct sockaddr_in6 ip6m_addr;
uint32_t ip6m_mtu;
};
# 549 "/usr/include/netinet/in.h" 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_NETINET_IN_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: netdb.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/netdb.h" 1 3 4
# 26 "/usr/include/netdb.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 27 "/usr/include/netdb.h" 2 3 4
# 1 "/usr/include/netinet/in.h" 1 3 4
# 24 "/usr/include/netinet/in.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stdint.h" 1 3 4
# 1 "/usr/include/stdint.h" 1 3 4
# 27 "/usr/include/stdint.h" 3 4
# 1 "/usr/include/bits/wchar.h" 1 3 4
# 28 "/usr/include/stdint.h" 2 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/stdint.h" 2 3 4
# 37 "/usr/include/stdint.h" 3 4
typedef signed char int8_t;
typedef short int int16_t;
typedef int int32_t;
__extension__
typedef long long int int64_t;
typedef unsigned char uint8_t;
typedef unsigned short int uint16_t;
typedef unsigned int uint32_t;
__extension__
typedef unsigned long long int uint64_t;
typedef signed char int_least8_t;
typedef short int int_least16_t;
typedef int int_least32_t;
__extension__
typedef long long int int_least64_t;
typedef unsigned char uint_least8_t;
typedef unsigned short int uint_least16_t;
typedef unsigned int uint_least32_t;
__extension__
typedef unsigned long long int uint_least64_t;
typedef signed char int_fast8_t;
typedef int int_fast16_t;
typedef int int_fast32_t;
__extension__
typedef long long int int_fast64_t;
typedef unsigned char uint_fast8_t;
typedef unsigned int uint_fast16_t;
typedef unsigned int uint_fast32_t;
__extension__
typedef unsigned long long int uint_fast64_t;
# 126 "/usr/include/stdint.h" 3 4
typedef int intptr_t;
typedef unsigned int uintptr_t;
# 138 "/usr/include/stdint.h" 3 4
__extension__
typedef long long int intmax_t;
__extension__
typedef unsigned long long int uintmax_t;
# 4 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stdint.h" 2 3 4
# 25 "/usr/include/netinet/in.h" 2 3 4
# 1 "/usr/include/sys/socket.h" 1 3 4
# 26 "/usr/include/sys/socket.h" 3 4
# 1 "/usr/include/sys/uio.h" 1 3 4
# 24 "/usr/include/sys/uio.h" 3 4
# 1 "/usr/include/sys/types.h" 1 3 4
# 29 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 32 "/usr/include/sys/types.h" 2 3 4
typedef __u_char u_char;
typedef __u_short u_short;
typedef __u_int u_int;
typedef __u_long u_long;
typedef __quad_t quad_t;
typedef __u_quad_t u_quad_t;
typedef __fsid_t fsid_t;
typedef __loff_t loff_t;
typedef __ino_t ino_t;
# 62 "/usr/include/sys/types.h" 3 4
typedef __dev_t dev_t;
typedef __gid_t gid_t;
typedef __mode_t mode_t;
typedef __nlink_t nlink_t;
typedef __uid_t uid_t;
typedef __off_t off_t;
# 100 "/usr/include/sys/types.h" 3 4
typedef __pid_t pid_t;
typedef __id_t id_t;
typedef __ssize_t ssize_t;
typedef __daddr_t daddr_t;
typedef __caddr_t caddr_t;
typedef __key_t key_t;
# 133 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/time.h" 1 3 4
# 75 "/usr/include/time.h" 3 4
typedef __time_t time_t;
# 93 "/usr/include/time.h" 3 4
typedef __clockid_t clockid_t;
# 105 "/usr/include/time.h" 3 4
typedef __timer_t timer_t;
# 134 "/usr/include/sys/types.h" 2 3 4
# 147 "/usr/include/sys/types.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 148 "/usr/include/sys/types.h" 2 3 4
typedef unsigned long int ulong;
typedef unsigned short int ushort;
typedef unsigned int uint;
# 201 "/usr/include/sys/types.h" 3 4
typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__)));
typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__)));
typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__)));
typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__)));
typedef int register_t __attribute__ ((__mode__ (__word__)));
# 217 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/endian.h" 1 3 4
# 37 "/usr/include/endian.h" 3 4
# 1 "/usr/include/bits/endian.h" 1 3 4
# 38 "/usr/include/endian.h" 2 3 4
# 218 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/select.h" 1 3 4
# 31 "/usr/include/sys/select.h" 3 4
# 1 "/usr/include/bits/select.h" 1 3 4
# 32 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/sigset.h" 1 3 4
# 24 "/usr/include/bits/sigset.h" 3 4
typedef int __sig_atomic_t;
typedef struct
{
unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))];
} __sigset_t;
# 35 "/usr/include/sys/select.h" 2 3 4
typedef __sigset_t sigset_t;
# 1 "/usr/include/time.h" 1 3 4
# 121 "/usr/include/time.h" 3 4
struct timespec
{
__time_t tv_sec;
long int tv_nsec;
};
# 45 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/time.h" 1 3 4
# 69 "/usr/include/bits/time.h" 3 4
struct timeval
{
__time_t tv_sec;
__suseconds_t tv_usec;
};
# 47 "/usr/include/sys/select.h" 2 3 4
typedef __suseconds_t suseconds_t;
typedef long int __fd_mask;
# 67 "/usr/include/sys/select.h" 3 4
typedef struct
{
__fd_mask __fds_bits[1024 / (8 * sizeof (__fd_mask))];
} fd_set;
typedef __fd_mask fd_mask;
# 99 "/usr/include/sys/select.h" 3 4
# 109 "/usr/include/sys/select.h" 3 4
extern int select (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
struct timeval *__restrict __timeout);
# 121 "/usr/include/sys/select.h" 3 4
extern int pselect (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
const struct timespec *__restrict __timeout,
const __sigset_t *__restrict __sigmask);
# 221 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/sysmacros.h" 1 3 4
# 30 "/usr/include/sys/sysmacros.h" 3 4
__extension__
extern unsigned int gnu_dev_major (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned int gnu_dev_minor (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned long long int gnu_dev_makedev (unsigned int __major,
unsigned int __minor)
__attribute__ ((__nothrow__));
# 224 "/usr/include/sys/types.h" 2 3 4
# 235 "/usr/include/sys/types.h" 3 4
typedef __blkcnt_t blkcnt_t;
typedef __fsblkcnt_t fsblkcnt_t;
typedef __fsfilcnt_t fsfilcnt_t;
# 270 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/pthreadtypes.h" 1 3 4
# 23 "/usr/include/bits/pthreadtypes.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 24 "/usr/include/bits/pthreadtypes.h" 2 3 4
# 50 "/usr/include/bits/pthreadtypes.h" 3 4
typedef unsigned long int pthread_t;
typedef union
{
char __size[36];
long int __align;
} pthread_attr_t;
# 67 "/usr/include/bits/pthreadtypes.h" 3 4
typedef struct __pthread_internal_slist
{
struct __pthread_internal_slist *__next;
} __pthread_slist_t;
typedef union
{
struct __pthread_mutex_s
{
int __lock;
unsigned int __count;
int __owner;
int __kind;
unsigned int __nusers;
__extension__ union
{
int __spins;
__pthread_slist_t __list;
};
} __data;
char __size[24];
long int __align;
} pthread_mutex_t;
typedef union
{
char __size[4];
int __align;
} pthread_mutexattr_t;
typedef union
{
struct
{
int __lock;
unsigned int __futex;
__extension__ unsigned long long int __total_seq;
__extension__ unsigned long long int __wakeup_seq;
__extension__ unsigned long long int __woken_seq;
void *__mutex;
unsigned int __nwaiters;
unsigned int __broadcast_seq;
} __data;
char __size[48];
__extension__ long long int __align;
} pthread_cond_t;
typedef union
{
char __size[4];
int __align;
} pthread_condattr_t;
typedef unsigned int pthread_key_t;
typedef int pthread_once_t;
typedef union
{
# 170 "/usr/include/bits/pthreadtypes.h" 3 4
struct
{
int __lock;
unsigned int __nr_readers;
unsigned int __readers_wakeup;
unsigned int __writer_wakeup;
unsigned int __nr_readers_queued;
unsigned int __nr_writers_queued;
unsigned char __flags;
unsigned char __shared;
unsigned char __pad1;
unsigned char __pad2;
int __writer;
} __data;
char __size[32];
long int __align;
} pthread_rwlock_t;
typedef union
{
char __size[8];
long int __align;
} pthread_rwlockattr_t;
typedef volatile int pthread_spinlock_t;
typedef union
{
char __size[20];
long int __align;
} pthread_barrier_t;
typedef union
{
char __size[4];
int __align;
} pthread_barrierattr_t;
# 271 "/usr/include/sys/types.h" 2 3 4
# 25 "/usr/include/sys/uio.h" 2 3 4
# 1 "/usr/include/bits/uio.h" 1 3 4
# 44 "/usr/include/bits/uio.h" 3 4
struct iovec
{
void *iov_base;
size_t iov_len;
};
# 30 "/usr/include/sys/uio.h" 2 3 4
# 40 "/usr/include/sys/uio.h" 3 4
extern ssize_t readv (int __fd, __const struct iovec *__iovec, int __count);
# 50 "/usr/include/sys/uio.h" 3 4
extern ssize_t writev (int __fd, __const struct iovec *__iovec, int __count);
# 29 "/usr/include/sys/socket.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 31 "/usr/include/sys/socket.h" 2 3 4
# 1 "/usr/include/bits/socket.h" 1 3 4
# 30 "/usr/include/bits/socket.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 31 "/usr/include/bits/socket.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 1 3 4
# 34 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/syslimits.h" 1 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 1 3 4
# 169 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 3 4
# 1 "/usr/include/limits.h" 1 3 4
# 145 "/usr/include/limits.h" 3 4
# 1 "/usr/include/bits/posix1_lim.h" 1 3 4
# 153 "/usr/include/bits/posix1_lim.h" 3 4
# 1 "/usr/include/bits/local_lim.h" 1 3 4
# 36 "/usr/include/bits/local_lim.h" 3 4
# 1 "/usr/include/linux/limits.h" 1 3 4
# 37 "/usr/include/bits/local_lim.h" 2 3 4
# 154 "/usr/include/bits/posix1_lim.h" 2 3 4
# 146 "/usr/include/limits.h" 2 3 4
# 1 "/usr/include/bits/posix2_lim.h" 1 3 4
# 150 "/usr/include/limits.h" 2 3 4
# 170 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 2 3 4
# 8 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/syslimits.h" 2 3 4
# 35 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 2 3 4
# 33 "/usr/include/bits/socket.h" 2 3 4
typedef __socklen_t socklen_t;
enum __socket_type
{
SOCK_STREAM = 1,
SOCK_DGRAM = 2,
SOCK_RAW = 3,
SOCK_RDM = 4,
SOCK_SEQPACKET = 5,
SOCK_PACKET = 10
};
# 147 "/usr/include/bits/socket.h" 3 4
# 1 "/usr/include/bits/sockaddr.h" 1 3 4
# 29 "/usr/include/bits/sockaddr.h" 3 4
typedef unsigned short int sa_family_t;
# 148 "/usr/include/bits/socket.h" 2 3 4
struct sockaddr
{
sa_family_t sa_family;
char sa_data[14];
};
# 167 "/usr/include/bits/socket.h" 3 4
struct sockaddr_storage
{
sa_family_t ss_family;
__uint32_t __ss_align;
char __ss_padding[(128 - (2 * sizeof (__uint32_t)))];
};
enum
{
MSG_OOB = 0x01,
MSG_PEEK = 0x02,
MSG_DONTROUTE = 0x04,
MSG_CTRUNC = 0x08,
MSG_PROXY = 0x10,
MSG_TRUNC = 0x20,
MSG_DONTWAIT = 0x40,
MSG_EOR = 0x80,
MSG_WAITALL = 0x100,
MSG_FIN = 0x200,
MSG_SYN = 0x400,
MSG_CONFIRM = 0x800,
MSG_RST = 0x1000,
MSG_ERRQUEUE = 0x2000,
MSG_NOSIGNAL = 0x4000,
MSG_MORE = 0x8000,
MSG_CMSG_CLOEXEC = 0x40000000
};
struct msghdr
{
void *msg_name;
socklen_t msg_namelen;
struct iovec *msg_iov;
size_t msg_iovlen;
void *msg_control;
size_t msg_controllen;
int msg_flags;
};
struct cmsghdr
{
size_t cmsg_len;
int cmsg_level;
int cmsg_type;
__extension__ unsigned char __cmsg_data [];
};
# 273 "/usr/include/bits/socket.h" 3 4
extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr,
struct cmsghdr *__cmsg) __attribute__ ((__nothrow__));
# 300 "/usr/include/bits/socket.h" 3 4
enum
{
SCM_RIGHTS = 0x01
, SCM_CREDENTIALS = 0x02
};
struct ucred
{
pid_t pid;
uid_t uid;
gid_t gid;
};
# 1 "/usr/include/asm/socket.h" 1 3 4
# 1 "/usr/include/asm/sockios.h" 1 3 4
# 5 "/usr/include/asm/socket.h" 2 3 4
# 321 "/usr/include/bits/socket.h" 2 3 4
struct linger
{
int l_onoff;
int l_linger;
};
# 37 "/usr/include/sys/socket.h" 2 3 4
struct osockaddr
{
unsigned short int sa_family;
unsigned char sa_data[14];
};
enum
{
SHUT_RD = 0,
SHUT_WR,
SHUT_RDWR
};
# 101 "/usr/include/sys/socket.h" 3 4
extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__));
extern int socketpair (int __domain, int __type, int __protocol,
int __fds[2]) __attribute__ ((__nothrow__));
extern int bind (int __fd, __const struct sockaddr * __addr, socklen_t __len)
__attribute__ ((__nothrow__));
extern int getsockname (int __fd, struct sockaddr *__restrict __addr,
socklen_t *__restrict __len) __attribute__ ((__nothrow__));
# 125 "/usr/include/sys/socket.h" 3 4
extern int connect (int __fd, __const struct sockaddr * __addr, socklen_t __len);
extern int getpeername (int __fd, struct sockaddr *__restrict __addr,
socklen_t *__restrict __len) __attribute__ ((__nothrow__));
extern ssize_t send (int __fd, __const void *__buf, size_t __n, int __flags);
extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags);
extern ssize_t sendto (int __fd, __const void *__buf, size_t __n,
int __flags, __const struct sockaddr * __addr,
socklen_t __addr_len);
# 162 "/usr/include/sys/socket.h" 3 4
extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n,
int __flags, struct sockaddr *__restrict __addr,
socklen_t *__restrict __addr_len);
extern ssize_t sendmsg (int __fd, __const struct msghdr *__message,
int __flags);
extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags);
extern int getsockopt (int __fd, int __level, int __optname,
void *__restrict __optval,
socklen_t *__restrict __optlen) __attribute__ ((__nothrow__));
extern int setsockopt (int __fd, int __level, int __optname,
__const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__));
extern int listen (int __fd, int __n) __attribute__ ((__nothrow__));
# 210 "/usr/include/sys/socket.h" 3 4
extern int accept (int __fd, struct sockaddr *__restrict __addr,
socklen_t *__restrict __addr_len);
extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__));
extern int sockatmark (int __fd) __attribute__ ((__nothrow__));
extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__));
# 241 "/usr/include/sys/socket.h" 3 4
# 26 "/usr/include/netinet/in.h" 2 3 4
enum
{
IPPROTO_IP = 0,
IPPROTO_HOPOPTS = 0,
IPPROTO_ICMP = 1,
IPPROTO_IGMP = 2,
IPPROTO_IPIP = 4,
IPPROTO_TCP = 6,
IPPROTO_EGP = 8,
IPPROTO_PUP = 12,
IPPROTO_UDP = 17,
IPPROTO_IDP = 22,
IPPROTO_TP = 29,
IPPROTO_IPV6 = 41,
IPPROTO_ROUTING = 43,
IPPROTO_FRAGMENT = 44,
IPPROTO_RSVP = 46,
IPPROTO_GRE = 47,
IPPROTO_ESP = 50,
IPPROTO_AH = 51,
IPPROTO_ICMPV6 = 58,
IPPROTO_NONE = 59,
IPPROTO_DSTOPTS = 60,
IPPROTO_MTP = 92,
IPPROTO_ENCAP = 98,
IPPROTO_PIM = 103,
IPPROTO_COMP = 108,
IPPROTO_SCTP = 132,
IPPROTO_RAW = 255,
IPPROTO_MAX
};
typedef uint16_t in_port_t;
enum
{
IPPORT_ECHO = 7,
IPPORT_DISCARD = 9,
IPPORT_SYSTAT = 11,
IPPORT_DAYTIME = 13,
IPPORT_NETSTAT = 15,
IPPORT_FTP = 21,
IPPORT_TELNET = 23,
IPPORT_SMTP = 25,
IPPORT_TIMESERVER = 37,
IPPORT_NAMESERVER = 42,
IPPORT_WHOIS = 43,
IPPORT_MTP = 57,
IPPORT_TFTP = 69,
IPPORT_RJE = 77,
IPPORT_FINGER = 79,
IPPORT_TTYLINK = 87,
IPPORT_SUPDUP = 95,
IPPORT_EXECSERVER = 512,
IPPORT_LOGINSERVER = 513,
IPPORT_CMDSERVER = 514,
IPPORT_EFSSERVER = 520,
IPPORT_BIFFUDP = 512,
IPPORT_WHOSERVER = 513,
IPPORT_ROUTESERVER = 520,
IPPORT_RESERVED = 1024,
IPPORT_USERRESERVED = 5000
};
typedef uint32_t in_addr_t;
struct in_addr
{
in_addr_t s_addr;
};
# 194 "/usr/include/netinet/in.h" 3 4
struct in6_addr
{
union
{
uint8_t u6_addr8[16];
uint16_t u6_addr16[8];
uint32_t u6_addr32[4];
} in6_u;
};
extern const struct in6_addr in6addr_any;
extern const struct in6_addr in6addr_loopback;
# 217 "/usr/include/netinet/in.h" 3 4
struct sockaddr_in
{
sa_family_t sin_family;
in_port_t sin_port;
struct in_addr sin_addr;
unsigned char sin_zero[sizeof (struct sockaddr) -
(sizeof (unsigned short int)) -
sizeof (in_port_t) -
sizeof (struct in_addr)];
};
struct sockaddr_in6
{
sa_family_t sin6_family;
in_port_t sin6_port;
uint32_t sin6_flowinfo;
struct in6_addr sin6_addr;
uint32_t sin6_scope_id;
};
struct ip_mreq
{
struct in_addr imr_multiaddr;
struct in_addr imr_interface;
};
struct ip_mreq_source
{
struct in_addr imr_multiaddr;
struct in_addr imr_interface;
struct in_addr imr_sourceaddr;
};
struct ipv6_mreq
{
struct in6_addr ipv6mr_multiaddr;
unsigned int ipv6mr_interface;
};
struct group_req
{
uint32_t gr_interface;
struct sockaddr_storage gr_group;
};
struct group_source_req
{
uint32_t gsr_interface;
struct sockaddr_storage gsr_group;
struct sockaddr_storage gsr_source;
};
struct ip_msfilter
{
struct in_addr imsf_multiaddr;
struct in_addr imsf_interface;
uint32_t imsf_fmode;
uint32_t imsf_numsrc;
struct in_addr imsf_slist[1];
};
struct group_filter
{
uint32_t gf_interface;
struct sockaddr_storage gf_group;
uint32_t gf_fmode;
uint32_t gf_numsrc;
struct sockaddr_storage gf_slist[1];
};
# 343 "/usr/include/netinet/in.h" 3 4
# 1 "/usr/include/bits/in.h" 1 3 4
# 82 "/usr/include/bits/in.h" 3 4
struct ip_opts
{
struct in_addr ip_dst;
char ip_opts[40];
};
struct ip_mreqn
{
struct in_addr imr_multiaddr;
struct in_addr imr_address;
int imr_ifindex;
};
struct in_pktinfo
{
int ipi_ifindex;
struct in_addr ipi_spec_dst;
struct in_addr ipi_addr;
};
# 344 "/usr/include/netinet/in.h" 2 3 4
# 352 "/usr/include/netinet/in.h" 3 4
extern uint32_t ntohl (uint32_t __netlong) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern uint16_t ntohs (uint16_t __netshort)
__attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern uint32_t htonl (uint32_t __hostlong)
__attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern uint16_t htons (uint16_t __hostshort)
__attribute__ ((__nothrow__)) __attribute__ ((__const__));
# 1 "/usr/include/bits/byteswap.h" 1 3 4
# 28 "/usr/include/bits/byteswap.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/byteswap.h" 2 3 4
# 364 "/usr/include/netinet/in.h" 2 3 4
# 426 "/usr/include/netinet/in.h" 3 4
extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) __attribute__ ((__nothrow__));
extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in)
__attribute__ ((__nothrow__));
# 454 "/usr/include/netinet/in.h" 3 4
struct in6_pktinfo
{
struct in6_addr ipi6_addr;
unsigned int ipi6_ifindex;
};
struct ip6_mtuinfo
{
struct sockaddr_in6 ip6m_addr;
uint32_t ip6m_mtu;
};
# 549 "/usr/include/netinet/in.h" 3 4
# 29 "/usr/include/netdb.h" 2 3 4
# 1 "/usr/include/rpc/netdb.h" 1 3 4
# 42 "/usr/include/rpc/netdb.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 43 "/usr/include/rpc/netdb.h" 2 3 4
struct rpcent
{
char *r_name;
char **r_aliases;
int r_number;
};
extern void setrpcent (int __stayopen) __attribute__ ((__nothrow__));
extern void endrpcent (void) __attribute__ ((__nothrow__));
extern struct rpcent *getrpcbyname (__const char *__name) __attribute__ ((__nothrow__));
extern struct rpcent *getrpcbynumber (int __number) __attribute__ ((__nothrow__));
extern struct rpcent *getrpcent (void) __attribute__ ((__nothrow__));
extern int getrpcbyname_r (__const char *__name, struct rpcent *__result_buf,
char *__buffer, size_t __buflen,
struct rpcent **__result) __attribute__ ((__nothrow__));
extern int getrpcbynumber_r (int __number, struct rpcent *__result_buf,
char *__buffer, size_t __buflen,
struct rpcent **__result) __attribute__ ((__nothrow__));
extern int getrpcent_r (struct rpcent *__result_buf, char *__buffer,
size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__));
# 34 "/usr/include/netdb.h" 2 3 4
# 43 "/usr/include/netdb.h" 3 4
# 1 "/usr/include/bits/netdb.h" 1 3 4
# 27 "/usr/include/bits/netdb.h" 3 4
struct netent
{
char *n_name;
char **n_aliases;
int n_addrtype;
uint32_t n_net;
};
# 44 "/usr/include/netdb.h" 2 3 4
# 54 "/usr/include/netdb.h" 3 4
extern int *__h_errno_location (void) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
# 88 "/usr/include/netdb.h" 3 4
extern void herror (__const char *__str) __attribute__ ((__nothrow__));
extern __const char *hstrerror (int __err_num) __attribute__ ((__nothrow__));
struct hostent
{
char *h_name;
char **h_aliases;
int h_addrtype;
int h_length;
char **h_addr_list;
};
extern void sethostent (int __stay_open);
extern void endhostent (void);
extern struct hostent *gethostent (void);
extern struct hostent *gethostbyaddr (__const void *__addr, __socklen_t __len,
int __type);
extern struct hostent *gethostbyname (__const char *__name);
# 149 "/usr/include/netdb.h" 3 4
extern struct hostent *gethostbyname2 (__const char *__name, int __af);
# 161 "/usr/include/netdb.h" 3 4
extern int gethostent_r (struct hostent *__restrict __result_buf,
char *__restrict __buf, size_t __buflen,
struct hostent **__restrict __result,
int *__restrict __h_errnop);
extern int gethostbyaddr_r (__const void *__restrict __addr, __socklen_t __len,
int __type,
struct hostent *__restrict __result_buf,
char *__restrict __buf, size_t __buflen,
struct hostent **__restrict __result,
int *__restrict __h_errnop);
extern int gethostbyname_r (__const char *__restrict __name,
struct hostent *__restrict __result_buf,
char *__restrict __buf, size_t __buflen,
struct hostent **__restrict __result,
int *__restrict __h_errnop);
extern int gethostbyname2_r (__const char *__restrict __name, int __af,
struct hostent *__restrict __result_buf,
char *__restrict __buf, size_t __buflen,
struct hostent **__restrict __result,
int *__restrict __h_errnop);
# 192 "/usr/include/netdb.h" 3 4
extern void setnetent (int __stay_open);
extern void endnetent (void);
extern struct netent *getnetent (void);
extern struct netent *getnetbyaddr (uint32_t __net, int __type);
extern struct netent *getnetbyname (__const char *__name);
# 231 "/usr/include/netdb.h" 3 4
extern int getnetent_r (struct netent *__restrict __result_buf,
char *__restrict __buf, size_t __buflen,
struct netent **__restrict __result,
int *__restrict __h_errnop);
extern int getnetbyaddr_r (uint32_t __net, int __type,
struct netent *__restrict __result_buf,
char *__restrict __buf, size_t __buflen,
struct netent **__restrict __result,
int *__restrict __h_errnop);
extern int getnetbyname_r (__const char *__restrict __name,
struct netent *__restrict __result_buf,
char *__restrict __buf, size_t __buflen,
struct netent **__restrict __result,
int *__restrict __h_errnop);
struct servent
{
char *s_name;
char **s_aliases;
int s_port;
char *s_proto;
};
extern void setservent (int __stay_open);
extern void endservent (void);
extern struct servent *getservent (void);
extern struct servent *getservbyname (__const char *__name,
__const char *__proto);
extern struct servent *getservbyport (int __port, __const char *__proto);
# 303 "/usr/include/netdb.h" 3 4
extern int getservent_r (struct servent *__restrict __result_buf,
char *__restrict __buf, size_t __buflen,
struct servent **__restrict __result);
extern int getservbyname_r (__const char *__restrict __name,
__const char *__restrict __proto,
struct servent *__restrict __result_buf,
char *__restrict __buf, size_t __buflen,
struct servent **__restrict __result);
extern int getservbyport_r (int __port, __const char *__restrict __proto,
struct servent *__restrict __result_buf,
char *__restrict __buf, size_t __buflen,
struct servent **__restrict __result);
struct protoent
{
char *p_name;
char **p_aliases;
int p_proto;
};
extern void setprotoent (int __stay_open);
extern void endprotoent (void);
extern struct protoent *getprotoent (void);
extern struct protoent *getprotobyname (__const char *__name);
extern struct protoent *getprotobynumber (int __proto);
# 369 "/usr/include/netdb.h" 3 4
extern int getprotoent_r (struct protoent *__restrict __result_buf,
char *__restrict __buf, size_t __buflen,
struct protoent **__restrict __result);
extern int getprotobyname_r (__const char *__restrict __name,
struct protoent *__restrict __result_buf,
char *__restrict __buf, size_t __buflen,
struct protoent **__restrict __result);
extern int getprotobynumber_r (int __proto,
struct protoent *__restrict __result_buf,
char *__restrict __buf, size_t __buflen,
struct protoent **__restrict __result);
# 390 "/usr/include/netdb.h" 3 4
extern int setnetgrent (__const char *__netgroup);
extern void endnetgrent (void);
# 407 "/usr/include/netdb.h" 3 4
extern int getnetgrent (char **__restrict __hostp,
char **__restrict __userp,
char **__restrict __domainp);
# 418 "/usr/include/netdb.h" 3 4
extern int innetgr (__const char *__netgroup, __const char *__host,
__const char *__user, __const char *domain);
extern int getnetgrent_r (char **__restrict __hostp,
char **__restrict __userp,
char **__restrict __domainp,
char *__restrict __buffer, size_t __buflen);
# 446 "/usr/include/netdb.h" 3 4
extern int rcmd (char **__restrict __ahost, unsigned short int __rport,
__const char *__restrict __locuser,
__const char *__restrict __remuser,
__const char *__restrict __cmd, int *__restrict __fd2p);
# 458 "/usr/include/netdb.h" 3 4
extern int rcmd_af (char **__restrict __ahost, unsigned short int __rport,
__const char *__restrict __locuser,
__const char *__restrict __remuser,
__const char *__restrict __cmd, int *__restrict __fd2p,
sa_family_t __af);
# 474 "/usr/include/netdb.h" 3 4
extern int rexec (char **__restrict __ahost, int __rport,
__const char *__restrict __name,
__const char *__restrict __pass,
__const char *__restrict __cmd, int *__restrict __fd2p);
# 486 "/usr/include/netdb.h" 3 4
extern int rexec_af (char **__restrict __ahost, int __rport,
__const char *__restrict __name,
__const char *__restrict __pass,
__const char *__restrict __cmd, int *__restrict __fd2p,
sa_family_t __af);
# 500 "/usr/include/netdb.h" 3 4
extern int ruserok (__const char *__rhost, int __suser,
__const char *__remuser, __const char *__locuser);
# 510 "/usr/include/netdb.h" 3 4
extern int ruserok_af (__const char *__rhost, int __suser,
__const char *__remuser, __const char *__locuser,
sa_family_t __af);
# 522 "/usr/include/netdb.h" 3 4
extern int rresvport (int *__alport);
# 531 "/usr/include/netdb.h" 3 4
extern int rresvport_af (int *__alport, sa_family_t __af);
struct addrinfo
{
int ai_flags;
int ai_family;
int ai_socktype;
int ai_protocol;
socklen_t ai_addrlen;
struct sockaddr *ai_addr;
char *ai_canonname;
struct addrinfo *ai_next;
};
# 631 "/usr/include/netdb.h" 3 4
extern int getaddrinfo (__const char *__restrict __name,
__const char *__restrict __service,
__const struct addrinfo *__restrict __req,
struct addrinfo **__restrict __pai);
extern void freeaddrinfo (struct addrinfo *__ai) __attribute__ ((__nothrow__));
extern __const char *gai_strerror (int __ecode) __attribute__ ((__nothrow__));
extern int getnameinfo (__const struct sockaddr *__restrict __sa,
socklen_t __salen, char *__restrict __host,
socklen_t __hostlen, char *__restrict __serv,
socklen_t __servlen, unsigned int __flags);
# 682 "/usr/include/netdb.h" 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_NETDB_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: Direct.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Possible ERROR while running preprocessor: /tmp/petsc-5zlcDX/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directory
compilation terminated.
ret = 256
error message = {/tmp/petsc-5zlcDX/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directory
compilation terminated.
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <Direct.h>
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: time.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/time.h" 1 3 4
# 29 "/usr/include/time.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 30 "/usr/include/time.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 40 "/usr/include/time.h" 2 3 4
# 1 "/usr/include/bits/time.h" 1 3 4
# 44 "/usr/include/time.h" 2 3 4
# 57 "/usr/include/time.h" 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 58 "/usr/include/time.h" 2 3 4
typedef __clock_t clock_t;
# 75 "/usr/include/time.h" 3 4
typedef __time_t time_t;
# 93 "/usr/include/time.h" 3 4
typedef __clockid_t clockid_t;
# 105 "/usr/include/time.h" 3 4
typedef __timer_t timer_t;
# 121 "/usr/include/time.h" 3 4
struct timespec
{
__time_t tv_sec;
long int tv_nsec;
};
struct tm
{
int tm_sec;
int tm_min;
int tm_hour;
int tm_mday;
int tm_mon;
int tm_year;
int tm_wday;
int tm_yday;
int tm_isdst;
long int tm_gmtoff;
__const char *tm_zone;
};
struct itimerspec
{
struct timespec it_interval;
struct timespec it_value;
};
struct sigevent;
typedef __pid_t pid_t;
extern clock_t clock (void) __attribute__ ((__nothrow__));
extern time_t time (time_t *__timer) __attribute__ ((__nothrow__));
extern double difftime (time_t __time1, time_t __time0)
__attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__));
extern size_t strftime (char *__restrict __s, size_t __maxsize,
__const char *__restrict __format,
__const struct tm *__restrict __tp) __attribute__ ((__nothrow__));
# 229 "/usr/include/time.h" 3 4
extern struct tm *gmtime (__const time_t *__timer) __attribute__ ((__nothrow__));
extern struct tm *localtime (__const time_t *__timer) __attribute__ ((__nothrow__));
extern struct tm *gmtime_r (__const time_t *__restrict __timer,
struct tm *__restrict __tp) __attribute__ ((__nothrow__));
extern struct tm *localtime_r (__const time_t *__restrict __timer,
struct tm *__restrict __tp) __attribute__ ((__nothrow__));
extern char *asctime (__const struct tm *__tp) __attribute__ ((__nothrow__));
extern char *ctime (__const time_t *__timer) __attribute__ ((__nothrow__));
extern char *asctime_r (__const struct tm *__restrict __tp,
char *__restrict __buf) __attribute__ ((__nothrow__));
extern char *ctime_r (__const time_t *__restrict __timer,
char *__restrict __buf) __attribute__ ((__nothrow__));
extern char *__tzname[2];
extern int __daylight;
extern long int __timezone;
extern char *tzname[2];
extern void tzset (void) __attribute__ ((__nothrow__));
extern int daylight;
extern long int timezone;
extern int stime (__const time_t *__when) __attribute__ ((__nothrow__));
# 312 "/usr/include/time.h" 3 4
extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__));
extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__));
extern int dysize (int __year) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
# 327 "/usr/include/time.h" 3 4
extern int nanosleep (__const struct timespec *__requested_time,
struct timespec *__remaining);
extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__));
extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__));
extern int clock_settime (clockid_t __clock_id, __const struct timespec *__tp)
__attribute__ ((__nothrow__));
extern int clock_nanosleep (clockid_t __clock_id, int __flags,
__const struct timespec *__req,
struct timespec *__rem);
extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__));
extern int timer_create (clockid_t __clock_id,
struct sigevent *__restrict __evp,
timer_t *__restrict __timerid) __attribute__ ((__nothrow__));
extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__));
extern int timer_settime (timer_t __timerid, int __flags,
__const struct itimerspec *__restrict __value,
struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__));
extern int timer_gettime (timer_t __timerid, struct itimerspec *__value)
__attribute__ ((__nothrow__));
extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__));
# 416 "/usr/include/time.h" 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_TIME_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: Ws2tcpip.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Possible ERROR while running preprocessor: /tmp/petsc-5zlcDX/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory
compilation terminated.
ret = 256
error message = {/tmp/petsc-5zlcDX/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory
compilation terminated.
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <Ws2tcpip.h>
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/types.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/sys/types.h" 1 3 4
# 27 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 28 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 32 "/usr/include/sys/types.h" 2 3 4
typedef __u_char u_char;
typedef __u_short u_short;
typedef __u_int u_int;
typedef __u_long u_long;
typedef __quad_t quad_t;
typedef __u_quad_t u_quad_t;
typedef __fsid_t fsid_t;
typedef __loff_t loff_t;
typedef __ino_t ino_t;
# 62 "/usr/include/sys/types.h" 3 4
typedef __dev_t dev_t;
typedef __gid_t gid_t;
typedef __mode_t mode_t;
typedef __nlink_t nlink_t;
typedef __uid_t uid_t;
typedef __off_t off_t;
# 100 "/usr/include/sys/types.h" 3 4
typedef __pid_t pid_t;
typedef __id_t id_t;
typedef __ssize_t ssize_t;
typedef __daddr_t daddr_t;
typedef __caddr_t caddr_t;
typedef __key_t key_t;
# 133 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/time.h" 1 3 4
# 75 "/usr/include/time.h" 3 4
typedef __time_t time_t;
# 93 "/usr/include/time.h" 3 4
typedef __clockid_t clockid_t;
# 105 "/usr/include/time.h" 3 4
typedef __timer_t timer_t;
# 134 "/usr/include/sys/types.h" 2 3 4
# 147 "/usr/include/sys/types.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 148 "/usr/include/sys/types.h" 2 3 4
typedef unsigned long int ulong;
typedef unsigned short int ushort;
typedef unsigned int uint;
# 195 "/usr/include/sys/types.h" 3 4
typedef int int8_t __attribute__ ((__mode__ (__QI__)));
typedef int int16_t __attribute__ ((__mode__ (__HI__)));
typedef int int32_t __attribute__ ((__mode__ (__SI__)));
typedef int int64_t __attribute__ ((__mode__ (__DI__)));
typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__)));
typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__)));
typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__)));
typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__)));
typedef int register_t __attribute__ ((__mode__ (__word__)));
# 217 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/endian.h" 1 3 4
# 37 "/usr/include/endian.h" 3 4
# 1 "/usr/include/bits/endian.h" 1 3 4
# 38 "/usr/include/endian.h" 2 3 4
# 218 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/select.h" 1 3 4
# 31 "/usr/include/sys/select.h" 3 4
# 1 "/usr/include/bits/select.h" 1 3 4
# 32 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/sigset.h" 1 3 4
# 24 "/usr/include/bits/sigset.h" 3 4
typedef int __sig_atomic_t;
typedef struct
{
unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))];
} __sigset_t;
# 35 "/usr/include/sys/select.h" 2 3 4
typedef __sigset_t sigset_t;
# 1 "/usr/include/time.h" 1 3 4
# 121 "/usr/include/time.h" 3 4
struct timespec
{
__time_t tv_sec;
long int tv_nsec;
};
# 45 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/time.h" 1 3 4
# 69 "/usr/include/bits/time.h" 3 4
struct timeval
{
__time_t tv_sec;
__suseconds_t tv_usec;
};
# 47 "/usr/include/sys/select.h" 2 3 4
typedef __suseconds_t suseconds_t;
typedef long int __fd_mask;
# 67 "/usr/include/sys/select.h" 3 4
typedef struct
{
__fd_mask __fds_bits[1024 / (8 * sizeof (__fd_mask))];
} fd_set;
typedef __fd_mask fd_mask;
# 99 "/usr/include/sys/select.h" 3 4
# 109 "/usr/include/sys/select.h" 3 4
extern int select (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
struct timeval *__restrict __timeout);
# 121 "/usr/include/sys/select.h" 3 4
extern int pselect (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
const struct timespec *__restrict __timeout,
const __sigset_t *__restrict __sigmask);
# 221 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/sysmacros.h" 1 3 4
# 30 "/usr/include/sys/sysmacros.h" 3 4
__extension__
extern unsigned int gnu_dev_major (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned int gnu_dev_minor (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned long long int gnu_dev_makedev (unsigned int __major,
unsigned int __minor)
__attribute__ ((__nothrow__));
# 224 "/usr/include/sys/types.h" 2 3 4
# 235 "/usr/include/sys/types.h" 3 4
typedef __blkcnt_t blkcnt_t;
typedef __fsblkcnt_t fsblkcnt_t;
typedef __fsfilcnt_t fsfilcnt_t;
# 270 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/pthreadtypes.h" 1 3 4
# 23 "/usr/include/bits/pthreadtypes.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 24 "/usr/include/bits/pthreadtypes.h" 2 3 4
# 50 "/usr/include/bits/pthreadtypes.h" 3 4
typedef unsigned long int pthread_t;
typedef union
{
char __size[36];
long int __align;
} pthread_attr_t;
# 67 "/usr/include/bits/pthreadtypes.h" 3 4
typedef struct __pthread_internal_slist
{
struct __pthread_internal_slist *__next;
} __pthread_slist_t;
typedef union
{
struct __pthread_mutex_s
{
int __lock;
unsigned int __count;
int __owner;
int __kind;
unsigned int __nusers;
__extension__ union
{
int __spins;
__pthread_slist_t __list;
};
} __data;
char __size[24];
long int __align;
} pthread_mutex_t;
typedef union
{
char __size[4];
int __align;
} pthread_mutexattr_t;
typedef union
{
struct
{
int __lock;
unsigned int __futex;
__extension__ unsigned long long int __total_seq;
__extension__ unsigned long long int __wakeup_seq;
__extension__ unsigned long long int __woken_seq;
void *__mutex;
unsigned int __nwaiters;
unsigned int __broadcast_seq;
} __data;
char __size[48];
__extension__ long long int __align;
} pthread_cond_t;
typedef union
{
char __size[4];
int __align;
} pthread_condattr_t;
typedef unsigned int pthread_key_t;
typedef int pthread_once_t;
typedef union
{
# 170 "/usr/include/bits/pthreadtypes.h" 3 4
struct
{
int __lock;
unsigned int __nr_readers;
unsigned int __readers_wakeup;
unsigned int __writer_wakeup;
unsigned int __nr_readers_queued;
unsigned int __nr_writers_queued;
unsigned char __flags;
unsigned char __shared;
unsigned char __pad1;
unsigned char __pad2;
int __writer;
} __data;
char __size[32];
long int __align;
} pthread_rwlock_t;
typedef union
{
char __size[8];
long int __align;
} pthread_rwlockattr_t;
typedef volatile int pthread_spinlock_t;
typedef union
{
char __size[20];
long int __align;
} pthread_barrier_t;
typedef union
{
char __size[4];
int __align;
} pthread_barrierattr_t;
# 271 "/usr/include/sys/types.h" 2 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_SYS_TYPES_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: WindowsX.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Possible ERROR while running preprocessor: /tmp/petsc-5zlcDX/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory
compilation terminated.
ret = 256
error message = {/tmp/petsc-5zlcDX/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory
compilation terminated.
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <WindowsX.h>
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: cxxabi.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Possible ERROR while running preprocessor: /tmp/petsc-5zlcDX/config.headers/conftest.c:3:20: fatal error: cxxabi.h: No such file or directory
compilation terminated.
ret = 256
error message = {/tmp/petsc-5zlcDX/config.headers/conftest.c:3:20: fatal error: cxxabi.h: No such file or directory
compilation terminated.
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <cxxabi.h>
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: float.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/float.h" 1 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_FLOAT_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: ieeefp.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Possible ERROR while running preprocessor: /tmp/petsc-5zlcDX/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory
compilation terminated.
ret = 256
error message = {/tmp/petsc-5zlcDX/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory
compilation terminated.
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <ieeefp.h>
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: stdint.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stdint.h" 1 3 4
# 1 "/usr/include/stdint.h" 1 3 4
# 26 "/usr/include/stdint.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 27 "/usr/include/stdint.h" 2 3 4
# 1 "/usr/include/bits/wchar.h" 1 3 4
# 28 "/usr/include/stdint.h" 2 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/stdint.h" 2 3 4
# 37 "/usr/include/stdint.h" 3 4
typedef signed char int8_t;
typedef short int int16_t;
typedef int int32_t;
__extension__
typedef long long int int64_t;
typedef unsigned char uint8_t;
typedef unsigned short int uint16_t;
typedef unsigned int uint32_t;
__extension__
typedef unsigned long long int uint64_t;
typedef signed char int_least8_t;
typedef short int int_least16_t;
typedef int int_least32_t;
__extension__
typedef long long int int_least64_t;
typedef unsigned char uint_least8_t;
typedef unsigned short int uint_least16_t;
typedef unsigned int uint_least32_t;
__extension__
typedef unsigned long long int uint_least64_t;
typedef signed char int_fast8_t;
typedef int int_fast16_t;
typedef int int_fast32_t;
__extension__
typedef long long int int_fast64_t;
typedef unsigned char uint_fast8_t;
typedef unsigned int uint_fast16_t;
typedef unsigned int uint_fast32_t;
__extension__
typedef unsigned long long int uint_fast64_t;
# 126 "/usr/include/stdint.h" 3 4
typedef int intptr_t;
typedef unsigned int uintptr_t;
# 138 "/usr/include/stdint.h" 3 4
__extension__
typedef long long int intmax_t;
__extension__
typedef unsigned long long int uintmax_t;
# 4 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stdint.h" 2 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_STDINT_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: fenv.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/fenv.h" 1 3 4
# 26 "/usr/include/fenv.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 27 "/usr/include/fenv.h" 2 3 4
# 58 "/usr/include/fenv.h" 3 4
# 1 "/usr/include/bits/fenv.h" 1 3 4
# 23 "/usr/include/bits/fenv.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 24 "/usr/include/bits/fenv.h" 2 3 4
enum
{
FE_INVALID = 0x01,
__FE_DENORM = 0x02,
FE_DIVBYZERO = 0x04,
FE_OVERFLOW = 0x08,
FE_UNDERFLOW = 0x10,
FE_INEXACT = 0x20
};
enum
{
FE_TONEAREST = 0,
FE_DOWNWARD = 0x400,
FE_UPWARD = 0x800,
FE_TOWARDZERO = 0xc00
};
typedef unsigned short int fexcept_t;
typedef struct
{
unsigned short int __control_word;
unsigned short int __unused1;
unsigned short int __status_word;
unsigned short int __unused2;
unsigned short int __tags;
unsigned short int __unused3;
unsigned int __eip;
unsigned short int __cs_selector;
unsigned int __opcode:11;
unsigned int __unused4:5;
unsigned int __data_offset;
unsigned short int __data_selector;
unsigned short int __unused5;
}
fenv_t;
# 59 "/usr/include/fenv.h" 2 3 4
extern int feclearexcept (int __excepts) __attribute__ ((__nothrow__));
extern int fegetexceptflag (fexcept_t *__flagp, int __excepts) __attribute__ ((__nothrow__));
extern int feraiseexcept (int __excepts) __attribute__ ((__nothrow__));
extern int fesetexceptflag (__const fexcept_t *__flagp, int __excepts) __attribute__ ((__nothrow__));
extern int fetestexcept (int __excepts) __attribute__ ((__nothrow__));
extern int fegetround (void) __attribute__ ((__nothrow__));
extern int fesetround (int __rounding_direction) __attribute__ ((__nothrow__));
extern int fegetenv (fenv_t *__envp) __attribute__ ((__nothrow__));
extern int feholdexcept (fenv_t *__envp) __attribute__ ((__nothrow__));
extern int fesetenv (__const fenv_t *__envp) __attribute__ ((__nothrow__));
extern int feupdateenv (__const fenv_t *__envp) __attribute__ ((__nothrow__));
# 134 "/usr/include/fenv.h" 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_FENV_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sched.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/sched.h" 1 3 4
# 23 "/usr/include/sched.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 24 "/usr/include/sched.h" 2 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 27 "/usr/include/sched.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 30 "/usr/include/sched.h" 2 3 4
# 1 "/usr/include/time.h" 1 3 4
# 121 "/usr/include/time.h" 3 4
struct timespec
{
__time_t tv_sec;
long int tv_nsec;
};
# 33 "/usr/include/sched.h" 2 3 4
# 1 "/usr/include/bits/sched.h" 1 3 4
# 66 "/usr/include/bits/sched.h" 3 4
struct sched_param
{
int __sched_priority;
};
extern int clone (int (*__fn) (void *__arg), void *__child_stack,
int __flags, void *__arg, ...) __attribute__ ((__nothrow__));
extern int unshare (int __flags) __attribute__ ((__nothrow__));
extern int sched_getcpu (void) __attribute__ ((__nothrow__));
struct __sched_param
{
int __sched_priority;
};
# 108 "/usr/include/bits/sched.h" 3 4
typedef unsigned long int __cpu_mask;
typedef struct
{
__cpu_mask __bits[1024 / (8 * sizeof (__cpu_mask))];
} cpu_set_t;
# 186 "/usr/include/bits/sched.h" 3 4
extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp)
__attribute__ ((__nothrow__));
extern cpu_set_t *__sched_cpualloc (size_t __count) __attribute__ ((__nothrow__)) ;
extern void __sched_cpufree (cpu_set_t *__set) __attribute__ ((__nothrow__));
# 36 "/usr/include/sched.h" 2 3 4
extern int sched_setparam (__pid_t __pid, __const struct sched_param *__param)
__attribute__ ((__nothrow__));
extern int sched_getparam (__pid_t __pid, struct sched_param *__param) __attribute__ ((__nothrow__));
extern int sched_setscheduler (__pid_t __pid, int __policy,
__const struct sched_param *__param) __attribute__ ((__nothrow__));
extern int sched_getscheduler (__pid_t __pid) __attribute__ ((__nothrow__));
extern int sched_yield (void) __attribute__ ((__nothrow__));
extern int sched_get_priority_max (int __algorithm) __attribute__ ((__nothrow__));
extern int sched_get_priority_min (int __algorithm) __attribute__ ((__nothrow__));
extern int sched_rr_get_interval (__pid_t __pid, struct timespec *__t) __attribute__ ((__nothrow__));
# 118 "/usr/include/sched.h" 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_SCHED_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: pthread.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/pthread.h" 1 3 4
# 23 "/usr/include/pthread.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 24 "/usr/include/pthread.h" 2 3 4
# 1 "/usr/include/endian.h" 1 3 4
# 37 "/usr/include/endian.h" 3 4
# 1 "/usr/include/bits/endian.h" 1 3 4
# 38 "/usr/include/endian.h" 2 3 4
# 25 "/usr/include/pthread.h" 2 3 4
# 1 "/usr/include/sched.h" 1 3 4
# 26 "/usr/include/sched.h" 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 27 "/usr/include/sched.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 30 "/usr/include/sched.h" 2 3 4
# 1 "/usr/include/time.h" 1 3 4
# 121 "/usr/include/time.h" 3 4
struct timespec
{
__time_t tv_sec;
long int tv_nsec;
};
# 33 "/usr/include/sched.h" 2 3 4
# 1 "/usr/include/bits/sched.h" 1 3 4
# 66 "/usr/include/bits/sched.h" 3 4
struct sched_param
{
int __sched_priority;
};
extern int clone (int (*__fn) (void *__arg), void *__child_stack,
int __flags, void *__arg, ...) __attribute__ ((__nothrow__));
extern int unshare (int __flags) __attribute__ ((__nothrow__));
extern int sched_getcpu (void) __attribute__ ((__nothrow__));
struct __sched_param
{
int __sched_priority;
};
# 108 "/usr/include/bits/sched.h" 3 4
typedef unsigned long int __cpu_mask;
typedef struct
{
__cpu_mask __bits[1024 / (8 * sizeof (__cpu_mask))];
} cpu_set_t;
# 186 "/usr/include/bits/sched.h" 3 4
extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp)
__attribute__ ((__nothrow__));
extern cpu_set_t *__sched_cpualloc (size_t __count) __attribute__ ((__nothrow__)) ;
extern void __sched_cpufree (cpu_set_t *__set) __attribute__ ((__nothrow__));
# 36 "/usr/include/sched.h" 2 3 4
extern int sched_setparam (__pid_t __pid, __const struct sched_param *__param)
__attribute__ ((__nothrow__));
extern int sched_getparam (__pid_t __pid, struct sched_param *__param) __attribute__ ((__nothrow__));
extern int sched_setscheduler (__pid_t __pid, int __policy,
__const struct sched_param *__param) __attribute__ ((__nothrow__));
extern int sched_getscheduler (__pid_t __pid) __attribute__ ((__nothrow__));
extern int sched_yield (void) __attribute__ ((__nothrow__));
extern int sched_get_priority_max (int __algorithm) __attribute__ ((__nothrow__));
extern int sched_get_priority_min (int __algorithm) __attribute__ ((__nothrow__));
extern int sched_rr_get_interval (__pid_t __pid, struct timespec *__t) __attribute__ ((__nothrow__));
# 118 "/usr/include/sched.h" 3 4
# 26 "/usr/include/pthread.h" 2 3 4
# 1 "/usr/include/time.h" 1 3 4
# 31 "/usr/include/time.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 40 "/usr/include/time.h" 2 3 4
# 1 "/usr/include/bits/time.h" 1 3 4
# 44 "/usr/include/time.h" 2 3 4
# 59 "/usr/include/time.h" 3 4
typedef __clock_t clock_t;
# 75 "/usr/include/time.h" 3 4
typedef __time_t time_t;
# 93 "/usr/include/time.h" 3 4
typedef __clockid_t clockid_t;
# 105 "/usr/include/time.h" 3 4
typedef __timer_t timer_t;
# 132 "/usr/include/time.h" 3 4
struct tm
{
int tm_sec;
int tm_min;
int tm_hour;
int tm_mday;
int tm_mon;
int tm_year;
int tm_wday;
int tm_yday;
int tm_isdst;
long int tm_gmtoff;
__const char *tm_zone;
};
struct itimerspec
{
struct timespec it_interval;
struct timespec it_value;
};
struct sigevent;
typedef __pid_t pid_t;
extern clock_t clock (void) __attribute__ ((__nothrow__));
extern time_t time (time_t *__timer) __attribute__ ((__nothrow__));
extern double difftime (time_t __time1, time_t __time0)
__attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__));
extern size_t strftime (char *__restrict __s, size_t __maxsize,
__const char *__restrict __format,
__const struct tm *__restrict __tp) __attribute__ ((__nothrow__));
# 229 "/usr/include/time.h" 3 4
extern struct tm *gmtime (__const time_t *__timer) __attribute__ ((__nothrow__));
extern struct tm *localtime (__const time_t *__timer) __attribute__ ((__nothrow__));
extern struct tm *gmtime_r (__const time_t *__restrict __timer,
struct tm *__restrict __tp) __attribute__ ((__nothrow__));
extern struct tm *localtime_r (__const time_t *__restrict __timer,
struct tm *__restrict __tp) __attribute__ ((__nothrow__));
extern char *asctime (__const struct tm *__tp) __attribute__ ((__nothrow__));
extern char *ctime (__const time_t *__timer) __attribute__ ((__nothrow__));
extern char *asctime_r (__const struct tm *__restrict __tp,
char *__restrict __buf) __attribute__ ((__nothrow__));
extern char *ctime_r (__const time_t *__restrict __timer,
char *__restrict __buf) __attribute__ ((__nothrow__));
extern char *__tzname[2];
extern int __daylight;
extern long int __timezone;
extern char *tzname[2];
extern void tzset (void) __attribute__ ((__nothrow__));
extern int daylight;
extern long int timezone;
extern int stime (__const time_t *__when) __attribute__ ((__nothrow__));
# 312 "/usr/include/time.h" 3 4
extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__));
extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__));
extern int dysize (int __year) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
# 327 "/usr/include/time.h" 3 4
extern int nanosleep (__const struct timespec *__requested_time,
struct timespec *__remaining);
extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__));
extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__));
extern int clock_settime (clockid_t __clock_id, __const struct timespec *__tp)
__attribute__ ((__nothrow__));
extern int clock_nanosleep (clockid_t __clock_id, int __flags,
__const struct timespec *__req,
struct timespec *__rem);
extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__));
extern int timer_create (clockid_t __clock_id,
struct sigevent *__restrict __evp,
timer_t *__restrict __timerid) __attribute__ ((__nothrow__));
extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__));
extern int timer_settime (timer_t __timerid, int __flags,
__const struct itimerspec *__restrict __value,
struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__));
extern int timer_gettime (timer_t __timerid, struct itimerspec *__value)
__attribute__ ((__nothrow__));
extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__));
# 416 "/usr/include/time.h" 3 4
# 27 "/usr/include/pthread.h" 2 3 4
# 1 "/usr/include/signal.h" 1 3 4
# 31 "/usr/include/signal.h" 3 4
# 1 "/usr/include/bits/sigset.h" 1 3 4
# 24 "/usr/include/bits/sigset.h" 3 4
typedef int __sig_atomic_t;
typedef struct
{
unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))];
} __sigset_t;
# 34 "/usr/include/signal.h" 2 3 4
# 50 "/usr/include/signal.h" 3 4
typedef __sigset_t sigset_t;
# 402 "/usr/include/signal.h" 3 4
# 30 "/usr/include/pthread.h" 2 3 4
# 1 "/usr/include/bits/pthreadtypes.h" 1 3 4
# 23 "/usr/include/bits/pthreadtypes.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 24 "/usr/include/bits/pthreadtypes.h" 2 3 4
# 50 "/usr/include/bits/pthreadtypes.h" 3 4
typedef unsigned long int pthread_t;
typedef union
{
char __size[36];
long int __align;
} pthread_attr_t;
# 67 "/usr/include/bits/pthreadtypes.h" 3 4
typedef struct __pthread_internal_slist
{
struct __pthread_internal_slist *__next;
} __pthread_slist_t;
typedef union
{
struct __pthread_mutex_s
{
int __lock;
unsigned int __count;
int __owner;
int __kind;
unsigned int __nusers;
__extension__ union
{
int __spins;
__pthread_slist_t __list;
};
} __data;
char __size[24];
long int __align;
} pthread_mutex_t;
typedef union
{
char __size[4];
int __align;
} pthread_mutexattr_t;
typedef union
{
struct
{
int __lock;
unsigned int __futex;
__extension__ unsigned long long int __total_seq;
__extension__ unsigned long long int __wakeup_seq;
__extension__ unsigned long long int __woken_seq;
void *__mutex;
unsigned int __nwaiters;
unsigned int __broadcast_seq;
} __data;
char __size[48];
__extension__ long long int __align;
} pthread_cond_t;
typedef union
{
char __size[4];
int __align;
} pthread_condattr_t;
typedef unsigned int pthread_key_t;
typedef int pthread_once_t;
typedef union
{
# 170 "/usr/include/bits/pthreadtypes.h" 3 4
struct
{
int __lock;
unsigned int __nr_readers;
unsigned int __readers_wakeup;
unsigned int __writer_wakeup;
unsigned int __nr_readers_queued;
unsigned int __nr_writers_queued;
unsigned char __flags;
unsigned char __shared;
unsigned char __pad1;
unsigned char __pad2;
int __writer;
} __data;
char __size[32];
long int __align;
} pthread_rwlock_t;
typedef union
{
char __size[8];
long int __align;
} pthread_rwlockattr_t;
typedef volatile int pthread_spinlock_t;
typedef union
{
char __size[20];
long int __align;
} pthread_barrier_t;
typedef union
{
char __size[4];
int __align;
} pthread_barrierattr_t;
# 31 "/usr/include/pthread.h" 2 3 4
# 1 "/usr/include/bits/setjmp.h" 1 3 4
# 27 "/usr/include/bits/setjmp.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 28 "/usr/include/bits/setjmp.h" 2 3 4
typedef int __jmp_buf[6];
# 32 "/usr/include/pthread.h" 2 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 33 "/usr/include/pthread.h" 2 3 4
enum
{
PTHREAD_CREATE_JOINABLE,
PTHREAD_CREATE_DETACHED
};
enum
{
PTHREAD_MUTEX_TIMED_NP,
PTHREAD_MUTEX_RECURSIVE_NP,
PTHREAD_MUTEX_ERRORCHECK_NP,
PTHREAD_MUTEX_ADAPTIVE_NP
# 63 "/usr/include/pthread.h" 3 4
};
# 115 "/usr/include/pthread.h" 3 4
enum
{
PTHREAD_RWLOCK_PREFER_READER_NP,
PTHREAD_RWLOCK_PREFER_WRITER_NP,
PTHREAD_RWLOCK_PREFER_WRITER_NONRECURSIVE_NP,
PTHREAD_RWLOCK_DEFAULT_NP = PTHREAD_RWLOCK_PREFER_READER_NP
};
# 147 "/usr/include/pthread.h" 3 4
enum
{
PTHREAD_INHERIT_SCHED,
PTHREAD_EXPLICIT_SCHED
};
enum
{
PTHREAD_SCOPE_SYSTEM,
PTHREAD_SCOPE_PROCESS
};
enum
{
PTHREAD_PROCESS_PRIVATE,
PTHREAD_PROCESS_SHARED
};
# 182 "/usr/include/pthread.h" 3 4
struct _pthread_cleanup_buffer
{
void (*__routine) (void *);
void *__arg;
int __canceltype;
struct _pthread_cleanup_buffer *__prev;
};
enum
{
PTHREAD_CANCEL_ENABLE,
PTHREAD_CANCEL_DISABLE
};
enum
{
PTHREAD_CANCEL_DEFERRED,
PTHREAD_CANCEL_ASYNCHRONOUS
};
# 220 "/usr/include/pthread.h" 3 4
extern int pthread_create (pthread_t *__restrict __newthread,
__const pthread_attr_t *__restrict __attr,
void *(*__start_routine) (void *),
void *__restrict __arg) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 3)));
extern void pthread_exit (void *__retval) __attribute__ ((__noreturn__));
extern int pthread_join (pthread_t __th, void **__thread_return);
# 263 "/usr/include/pthread.h" 3 4
extern int pthread_detach (pthread_t __th) __attribute__ ((__nothrow__));
extern pthread_t pthread_self (void) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern int pthread_equal (pthread_t __thread1, pthread_t __thread2) __attribute__ ((__nothrow__));
extern int pthread_attr_init (pthread_attr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_attr_destroy (pthread_attr_t *__attr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_attr_getdetachstate (__const pthread_attr_t *__attr,
int *__detachstate)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_attr_setdetachstate (pthread_attr_t *__attr,
int __detachstate)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_attr_getguardsize (__const pthread_attr_t *__attr,
size_t *__guardsize)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_attr_setguardsize (pthread_attr_t *__attr,
size_t __guardsize)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_attr_getschedparam (__const pthread_attr_t *__restrict
__attr,
struct sched_param *__restrict __param)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_attr_setschedparam (pthread_attr_t *__restrict __attr,
__const struct sched_param *__restrict
__param) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_attr_getschedpolicy (__const pthread_attr_t *__restrict
__attr, int *__restrict __policy)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_attr_setschedpolicy (pthread_attr_t *__attr, int __policy)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_attr_getinheritsched (__const pthread_attr_t *__restrict
__attr, int *__restrict __inherit)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_attr_setinheritsched (pthread_attr_t *__attr,
int __inherit)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_attr_getscope (__const pthread_attr_t *__restrict __attr,
int *__restrict __scope)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_attr_setscope (pthread_attr_t *__attr, int __scope)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_attr_getstackaddr (__const pthread_attr_t *__restrict
__attr, void **__restrict __stackaddr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))) __attribute__ ((__deprecated__));
extern int pthread_attr_setstackaddr (pthread_attr_t *__attr,
void *__stackaddr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__));
extern int pthread_attr_getstacksize (__const pthread_attr_t *__restrict
__attr, size_t *__restrict __stacksize)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_attr_setstacksize (pthread_attr_t *__attr,
size_t __stacksize)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_attr_getstack (__const pthread_attr_t *__restrict __attr,
void **__restrict __stackaddr,
size_t *__restrict __stacksize)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2, 3)));
extern int pthread_attr_setstack (pthread_attr_t *__attr, void *__stackaddr,
size_t __stacksize) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 413 "/usr/include/pthread.h" 3 4
extern int pthread_setschedparam (pthread_t __target_thread, int __policy,
__const struct sched_param *__param)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3)));
extern int pthread_getschedparam (pthread_t __target_thread,
int *__restrict __policy,
struct sched_param *__restrict __param)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3)));
extern int pthread_setschedprio (pthread_t __target_thread, int __prio)
__attribute__ ((__nothrow__));
# 466 "/usr/include/pthread.h" 3 4
extern int pthread_once (pthread_once_t *__once_control,
void (*__init_routine) (void)) __attribute__ ((__nonnull__ (1, 2)));
# 478 "/usr/include/pthread.h" 3 4
extern int pthread_setcancelstate (int __state, int *__oldstate);
extern int pthread_setcanceltype (int __type, int *__oldtype);
extern int pthread_cancel (pthread_t __th);
extern void pthread_testcancel (void);
typedef struct
{
struct
{
__jmp_buf __cancel_jmp_buf;
int __mask_was_saved;
} __cancel_jmp_buf[1];
void *__pad[4];
} __pthread_unwind_buf_t __attribute__ ((__aligned__));
# 512 "/usr/include/pthread.h" 3 4
struct __pthread_cleanup_frame
{
void (*__cancel_routine) (void *);
void *__cancel_arg;
int __do_it;
int __cancel_type;
};
# 652 "/usr/include/pthread.h" 3 4
extern void __pthread_register_cancel (__pthread_unwind_buf_t *__buf)
__attribute__ ((__regparm__ (1)));
# 663 "/usr/include/pthread.h" 3 4
extern void __pthread_unregister_cancel (__pthread_unwind_buf_t *__buf)
__attribute__ ((__regparm__ (1)));
# 703 "/usr/include/pthread.h" 3 4
extern void __pthread_unwind_next (__pthread_unwind_buf_t *__buf)
__attribute__ ((__regparm__ (1))) __attribute__ ((__noreturn__))
__attribute__ ((__weak__))
;
struct __jmp_buf_tag;
extern int __sigsetjmp (struct __jmp_buf_tag *__env, int __savemask) __attribute__ ((__nothrow__));
extern int pthread_mutex_init (pthread_mutex_t *__mutex,
__const pthread_mutexattr_t *__mutexattr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_mutex_destroy (pthread_mutex_t *__mutex)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_mutex_trylock (pthread_mutex_t *__mutex)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_mutex_lock (pthread_mutex_t *__mutex)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_mutex_timedlock (pthread_mutex_t *__restrict __mutex,
__const struct timespec *__restrict
__abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_mutex_unlock (pthread_mutex_t *__mutex)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 774 "/usr/include/pthread.h" 3 4
extern int pthread_mutexattr_init (pthread_mutexattr_t *__attr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_mutexattr_destroy (pthread_mutexattr_t *__attr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_mutexattr_getpshared (__const pthread_mutexattr_t *
__restrict __attr,
int *__restrict __pshared)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_mutexattr_setpshared (pthread_mutexattr_t *__attr,
int __pshared)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 846 "/usr/include/pthread.h" 3 4
extern int pthread_rwlock_init (pthread_rwlock_t *__restrict __rwlock,
__const pthread_rwlockattr_t *__restrict
__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_rwlock_destroy (pthread_rwlock_t *__rwlock)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_rwlock_rdlock (pthread_rwlock_t *__rwlock)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_rwlock_tryrdlock (pthread_rwlock_t *__rwlock)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_rwlock_timedrdlock (pthread_rwlock_t *__restrict __rwlock,
__const struct timespec *__restrict
__abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_rwlock_wrlock (pthread_rwlock_t *__rwlock)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_rwlock_trywrlock (pthread_rwlock_t *__rwlock)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_rwlock_timedwrlock (pthread_rwlock_t *__restrict __rwlock,
__const struct timespec *__restrict
__abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_rwlock_unlock (pthread_rwlock_t *__rwlock)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_rwlockattr_init (pthread_rwlockattr_t *__attr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_rwlockattr_destroy (pthread_rwlockattr_t *__attr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_rwlockattr_getpshared (__const pthread_rwlockattr_t *
__restrict __attr,
int *__restrict __pshared)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_rwlockattr_setpshared (pthread_rwlockattr_t *__attr,
int __pshared)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_rwlockattr_getkind_np (__const pthread_rwlockattr_t *
__restrict __attr,
int *__restrict __pref)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_rwlockattr_setkind_np (pthread_rwlockattr_t *__attr,
int __pref) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_cond_init (pthread_cond_t *__restrict __cond,
__const pthread_condattr_t *__restrict
__cond_attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_cond_destroy (pthread_cond_t *__cond)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_cond_signal (pthread_cond_t *__cond)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_cond_broadcast (pthread_cond_t *__cond)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_cond_wait (pthread_cond_t *__restrict __cond,
pthread_mutex_t *__restrict __mutex)
__attribute__ ((__nonnull__ (1, 2)));
# 958 "/usr/include/pthread.h" 3 4
extern int pthread_cond_timedwait (pthread_cond_t *__restrict __cond,
pthread_mutex_t *__restrict __mutex,
__const struct timespec *__restrict
__abstime) __attribute__ ((__nonnull__ (1, 2, 3)));
extern int pthread_condattr_init (pthread_condattr_t *__attr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_condattr_destroy (pthread_condattr_t *__attr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_condattr_getpshared (__const pthread_condattr_t *
__restrict __attr,
int *__restrict __pshared)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_condattr_setpshared (pthread_condattr_t *__attr,
int __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_condattr_getclock (__const pthread_condattr_t *
__restrict __attr,
__clockid_t *__restrict __clock_id)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_condattr_setclock (pthread_condattr_t *__attr,
__clockid_t __clock_id)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 1002 "/usr/include/pthread.h" 3 4
extern int pthread_spin_init (pthread_spinlock_t *__lock, int __pshared)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_spin_destroy (pthread_spinlock_t *__lock)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_spin_lock (pthread_spinlock_t *__lock)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_spin_trylock (pthread_spinlock_t *__lock)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_spin_unlock (pthread_spinlock_t *__lock)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_barrier_init (pthread_barrier_t *__restrict __barrier,
__const pthread_barrierattr_t *__restrict
__attr, unsigned int __count)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_barrier_destroy (pthread_barrier_t *__barrier)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_barrier_wait (pthread_barrier_t *__barrier)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_barrierattr_init (pthread_barrierattr_t *__attr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_barrierattr_destroy (pthread_barrierattr_t *__attr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_barrierattr_getpshared (__const pthread_barrierattr_t *
__restrict __attr,
int *__restrict __pshared)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_barrierattr_setpshared (pthread_barrierattr_t *__attr,
int __pshared)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 1069 "/usr/include/pthread.h" 3 4
extern int pthread_key_create (pthread_key_t *__key,
void (*__destr_function) (void *))
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_key_delete (pthread_key_t __key) __attribute__ ((__nothrow__));
extern void *pthread_getspecific (pthread_key_t __key) __attribute__ ((__nothrow__));
extern int pthread_setspecific (pthread_key_t __key,
__const void *__pointer) __attribute__ ((__nothrow__)) ;
extern int pthread_getcpuclockid (pthread_t __thread_id,
__clockid_t *__clock_id)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2)));
# 1103 "/usr/include/pthread.h" 3 4
extern int pthread_atfork (void (*__prepare) (void),
void (*__parent) (void),
void (*__child) (void)) __attribute__ ((__nothrow__));
# 1117 "/usr/include/pthread.h" 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_PTHREAD_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: dos.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Possible ERROR while running preprocessor: /tmp/petsc-5zlcDX/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory
compilation terminated.
ret = 256
error message = {/tmp/petsc-5zlcDX/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory
compilation terminated.
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <dos.h>
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: endian.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/endian.h" 1 3 4
# 22 "/usr/include/endian.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 23 "/usr/include/endian.h" 2 3 4
# 37 "/usr/include/endian.h" 3 4
# 1 "/usr/include/bits/endian.h" 1 3 4
# 38 "/usr/include/endian.h" 2 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_ENDIAN_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: fcntl.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/fcntl.h" 1 3 4
# 27 "/usr/include/fcntl.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 28 "/usr/include/fcntl.h" 2 3 4
# 1 "/usr/include/bits/fcntl.h" 1 3 4
# 24 "/usr/include/bits/fcntl.h" 3 4
# 1 "/usr/include/sys/types.h" 1 3 4
# 29 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 32 "/usr/include/sys/types.h" 2 3 4
typedef __u_char u_char;
typedef __u_short u_short;
typedef __u_int u_int;
typedef __u_long u_long;
typedef __quad_t quad_t;
typedef __u_quad_t u_quad_t;
typedef __fsid_t fsid_t;
typedef __loff_t loff_t;
typedef __ino_t ino_t;
# 62 "/usr/include/sys/types.h" 3 4
typedef __dev_t dev_t;
typedef __gid_t gid_t;
typedef __mode_t mode_t;
typedef __nlink_t nlink_t;
typedef __uid_t uid_t;
typedef __off_t off_t;
# 100 "/usr/include/sys/types.h" 3 4
typedef __pid_t pid_t;
typedef __id_t id_t;
typedef __ssize_t ssize_t;
typedef __daddr_t daddr_t;
typedef __caddr_t caddr_t;
typedef __key_t key_t;
# 133 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/time.h" 1 3 4
# 75 "/usr/include/time.h" 3 4
typedef __time_t time_t;
# 93 "/usr/include/time.h" 3 4
typedef __clockid_t clockid_t;
# 105 "/usr/include/time.h" 3 4
typedef __timer_t timer_t;
# 134 "/usr/include/sys/types.h" 2 3 4
# 147 "/usr/include/sys/types.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 148 "/usr/include/sys/types.h" 2 3 4
typedef unsigned long int ulong;
typedef unsigned short int ushort;
typedef unsigned int uint;
# 195 "/usr/include/sys/types.h" 3 4
typedef int int8_t __attribute__ ((__mode__ (__QI__)));
typedef int int16_t __attribute__ ((__mode__ (__HI__)));
typedef int int32_t __attribute__ ((__mode__ (__SI__)));
typedef int int64_t __attribute__ ((__mode__ (__DI__)));
typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__)));
typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__)));
typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__)));
typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__)));
typedef int register_t __attribute__ ((__mode__ (__word__)));
# 217 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/endian.h" 1 3 4
# 37 "/usr/include/endian.h" 3 4
# 1 "/usr/include/bits/endian.h" 1 3 4
# 38 "/usr/include/endian.h" 2 3 4
# 218 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/select.h" 1 3 4
# 31 "/usr/include/sys/select.h" 3 4
# 1 "/usr/include/bits/select.h" 1 3 4
# 32 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/sigset.h" 1 3 4
# 24 "/usr/include/bits/sigset.h" 3 4
typedef int __sig_atomic_t;
typedef struct
{
unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))];
} __sigset_t;
# 35 "/usr/include/sys/select.h" 2 3 4
typedef __sigset_t sigset_t;
# 1 "/usr/include/time.h" 1 3 4
# 121 "/usr/include/time.h" 3 4
struct timespec
{
__time_t tv_sec;
long int tv_nsec;
};
# 45 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/time.h" 1 3 4
# 69 "/usr/include/bits/time.h" 3 4
struct timeval
{
__time_t tv_sec;
__suseconds_t tv_usec;
};
# 47 "/usr/include/sys/select.h" 2 3 4
typedef __suseconds_t suseconds_t;
typedef long int __fd_mask;
# 67 "/usr/include/sys/select.h" 3 4
typedef struct
{
__fd_mask __fds_bits[1024 / (8 * sizeof (__fd_mask))];
} fd_set;
typedef __fd_mask fd_mask;
# 99 "/usr/include/sys/select.h" 3 4
# 109 "/usr/include/sys/select.h" 3 4
extern int select (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
struct timeval *__restrict __timeout);
# 121 "/usr/include/sys/select.h" 3 4
extern int pselect (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
const struct timespec *__restrict __timeout,
const __sigset_t *__restrict __sigmask);
# 221 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/sysmacros.h" 1 3 4
# 30 "/usr/include/sys/sysmacros.h" 3 4
__extension__
extern unsigned int gnu_dev_major (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned int gnu_dev_minor (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned long long int gnu_dev_makedev (unsigned int __major,
unsigned int __minor)
__attribute__ ((__nothrow__));
# 224 "/usr/include/sys/types.h" 2 3 4
# 235 "/usr/include/sys/types.h" 3 4
typedef __blkcnt_t blkcnt_t;
typedef __fsblkcnt_t fsblkcnt_t;
typedef __fsfilcnt_t fsfilcnt_t;
# 270 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/pthreadtypes.h" 1 3 4
# 23 "/usr/include/bits/pthreadtypes.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 24 "/usr/include/bits/pthreadtypes.h" 2 3 4
# 50 "/usr/include/bits/pthreadtypes.h" 3 4
typedef unsigned long int pthread_t;
typedef union
{
char __size[36];
long int __align;
} pthread_attr_t;
# 67 "/usr/include/bits/pthreadtypes.h" 3 4
typedef struct __pthread_internal_slist
{
struct __pthread_internal_slist *__next;
} __pthread_slist_t;
typedef union
{
struct __pthread_mutex_s
{
int __lock;
unsigned int __count;
int __owner;
int __kind;
unsigned int __nusers;
__extension__ union
{
int __spins;
__pthread_slist_t __list;
};
} __data;
char __size[24];
long int __align;
} pthread_mutex_t;
typedef union
{
char __size[4];
int __align;
} pthread_mutexattr_t;
typedef union
{
struct
{
int __lock;
unsigned int __futex;
__extension__ unsigned long long int __total_seq;
__extension__ unsigned long long int __wakeup_seq;
__extension__ unsigned long long int __woken_seq;
void *__mutex;
unsigned int __nwaiters;
unsigned int __broadcast_seq;
} __data;
char __size[48];
__extension__ long long int __align;
} pthread_cond_t;
typedef union
{
char __size[4];
int __align;
} pthread_condattr_t;
typedef unsigned int pthread_key_t;
typedef int pthread_once_t;
typedef union
{
# 170 "/usr/include/bits/pthreadtypes.h" 3 4
struct
{
int __lock;
unsigned int __nr_readers;
unsigned int __readers_wakeup;
unsigned int __writer_wakeup;
unsigned int __nr_readers_queued;
unsigned int __nr_writers_queued;
unsigned char __flags;
unsigned char __shared;
unsigned char __pad1;
unsigned char __pad2;
int __writer;
} __data;
char __size[32];
long int __align;
} pthread_rwlock_t;
typedef union
{
char __size[8];
long int __align;
} pthread_rwlockattr_t;
typedef volatile int pthread_spinlock_t;
typedef union
{
char __size[20];
long int __align;
} pthread_barrier_t;
typedef union
{
char __size[4];
int __align;
} pthread_barrierattr_t;
# 271 "/usr/include/sys/types.h" 2 3 4
# 25 "/usr/include/bits/fcntl.h" 2 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 26 "/usr/include/bits/fcntl.h" 2 3 4
# 158 "/usr/include/bits/fcntl.h" 3 4
struct flock
{
short int l_type;
short int l_whence;
__off_t l_start;
__off_t l_len;
__pid_t l_pid;
};
# 225 "/usr/include/bits/fcntl.h" 3 4
# 254 "/usr/include/bits/fcntl.h" 3 4
# 35 "/usr/include/fcntl.h" 2 3 4
# 76 "/usr/include/fcntl.h" 3 4
extern int fcntl (int __fd, int __cmd, ...);
# 85 "/usr/include/fcntl.h" 3 4
extern int open (__const char *__file, int __oflag, ...) __attribute__ ((__nonnull__ (1)));
# 130 "/usr/include/fcntl.h" 3 4
extern int creat (__const char *__file, __mode_t __mode) __attribute__ ((__nonnull__ (1)));
# 159 "/usr/include/fcntl.h" 3 4
extern int lockf (int __fd, int __cmd, __off_t __len);
# 176 "/usr/include/fcntl.h" 3 4
extern int posix_fadvise (int __fd, __off_t __offset, __off_t __len,
int __advise) __attribute__ ((__nothrow__));
# 198 "/usr/include/fcntl.h" 3 4
extern int posix_fallocate (int __fd, __off_t __offset, __off_t __len);
# 220 "/usr/include/fcntl.h" 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_FCNTL_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: float.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/float.h" 1 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_FLOAT_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: io.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Possible ERROR while running preprocessor: /tmp/petsc-5zlcDX/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory
compilation terminated.
ret = 256
error message = {/tmp/petsc-5zlcDX/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory
compilation terminated.
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <io.h>
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: limits.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 1 3 4
# 34 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/syslimits.h" 1 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 1 3 4
# 169 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 3 4
# 1 "/usr/include/limits.h" 1 3 4
# 27 "/usr/include/limits.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 28 "/usr/include/limits.h" 2 3 4
# 145 "/usr/include/limits.h" 3 4
# 1 "/usr/include/bits/posix1_lim.h" 1 3 4
# 153 "/usr/include/bits/posix1_lim.h" 3 4
# 1 "/usr/include/bits/local_lim.h" 1 3 4
# 36 "/usr/include/bits/local_lim.h" 3 4
# 1 "/usr/include/linux/limits.h" 1 3 4
# 37 "/usr/include/bits/local_lim.h" 2 3 4
# 154 "/usr/include/bits/posix1_lim.h" 2 3 4
# 146 "/usr/include/limits.h" 2 3 4
# 1 "/usr/include/bits/posix2_lim.h" 1 3 4
# 150 "/usr/include/limits.h" 2 3 4
# 170 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 2 3 4
# 8 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/syslimits.h" 2 3 4
# 35 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 2 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_LIMITS_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: malloc.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/malloc.h" 1 3 4
# 24 "/usr/include/malloc.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 25 "/usr/include/malloc.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 149 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef int ptrdiff_t;
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 323 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef long int wchar_t;
# 26 "/usr/include/malloc.h" 2 3 4
# 47 "/usr/include/malloc.h" 3 4
extern void *malloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ;
extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__))
__attribute__ ((__malloc__)) ;
extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__))
__attribute__ ((__warn_unused_result__));
extern void free (void *__ptr) __attribute__ ((__nothrow__));
extern void cfree (void *__ptr) __attribute__ ((__nothrow__));
extern void *memalign (size_t __alignment, size_t __size) __attribute__ ((__nothrow__))
__attribute__ ((__malloc__)) ;
extern void *valloc (size_t __size) __attribute__ ((__nothrow__))
__attribute__ ((__malloc__)) ;
extern void * pvalloc (size_t __size) __attribute__ ((__nothrow__))
__attribute__ ((__malloc__)) ;
extern void *(*__morecore) (ptrdiff_t __size);
extern void *__default_morecore (ptrdiff_t __size) __attribute__ ((__nothrow__))
__attribute__ ((__malloc__));
struct mallinfo {
int arena;
int ordblks;
int smblks;
int hblks;
int hblkhd;
int usmblks;
int fsmblks;
int uordblks;
int fordblks;
int keepcost;
};
extern struct mallinfo mallinfo (void) __attribute__ ((__nothrow__));
# 132 "/usr/include/malloc.h" 3 4
extern int mallopt (int __param, int __val) __attribute__ ((__nothrow__));
extern int malloc_trim (size_t __pad) __attribute__ ((__nothrow__));
extern size_t malloc_usable_size (void *__ptr) __attribute__ ((__nothrow__));
extern void malloc_stats (void) __attribute__ ((__nothrow__));
extern void *malloc_get_state (void) __attribute__ ((__nothrow__));
extern int malloc_set_state (void *__ptr) __attribute__ ((__nothrow__));
extern void (*__malloc_initialize_hook) (void);
extern void (*__free_hook) (void *__ptr, __const void *)
;
extern void *(*__malloc_hook) (size_t __size, __const void *)
;
extern void *(*__realloc_hook) (void *__ptr, size_t __size, __const void *)
;
extern void *(*__memalign_hook) (size_t __alignment, size_t __size, __const void *)
;
extern void (*__after_morecore_hook) (void);
extern void __malloc_check_init (void) __attribute__ ((__nothrow__));
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_MALLOC_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: pwd.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/pwd.h" 1 3 4
# 26 "/usr/include/pwd.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 27 "/usr/include/pwd.h" 2 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 31 "/usr/include/pwd.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 34 "/usr/include/pwd.h" 2 3 4
typedef __gid_t gid_t;
typedef __uid_t uid_t;
struct passwd
{
char *pw_name;
char *pw_passwd;
__uid_t pw_uid;
__gid_t pw_gid;
char *pw_gecos;
char *pw_dir;
char *pw_shell;
};
# 1 "/usr/include/stdio.h" 1 3 4
# 45 "/usr/include/stdio.h" 3 4
struct _IO_FILE;
typedef struct _IO_FILE FILE;
# 65 "/usr/include/pwd.h" 2 3 4
# 73 "/usr/include/pwd.h" 3 4
extern void setpwent (void);
extern void endpwent (void);
extern struct passwd *getpwent (void);
# 95 "/usr/include/pwd.h" 3 4
extern struct passwd *fgetpwent (FILE *__stream);
extern int putpwent (__const struct passwd *__restrict __p,
FILE *__restrict __f);
extern struct passwd *getpwuid (__uid_t __uid);
extern struct passwd *getpwnam (__const char *__name);
# 140 "/usr/include/pwd.h" 3 4
extern int getpwent_r (struct passwd *__restrict __resultbuf,
char *__restrict __buffer, size_t __buflen,
struct passwd **__restrict __result);
extern int getpwuid_r (__uid_t __uid,
struct passwd *__restrict __resultbuf,
char *__restrict __buffer, size_t __buflen,
struct passwd **__restrict __result);
extern int getpwnam_r (__const char *__restrict __name,
struct passwd *__restrict __resultbuf,
char *__restrict __buffer, size_t __buflen,
struct passwd **__restrict __result);
# 164 "/usr/include/pwd.h" 3 4
extern int fgetpwent_r (FILE *__restrict __stream,
struct passwd *__restrict __resultbuf,
char *__restrict __buffer, size_t __buflen,
struct passwd **__restrict __result);
# 184 "/usr/include/pwd.h" 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_PWD_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: search.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/search.h" 1 3 4
# 23 "/usr/include/search.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 24 "/usr/include/search.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 27 "/usr/include/search.h" 2 3 4
# 45 "/usr/include/search.h" 3 4
extern void insque (void *__elem, void *__prev) __attribute__ ((__nothrow__));
extern void remque (void *__elem) __attribute__ ((__nothrow__));
typedef int (*__compar_fn_t) (__const void *, __const void *);
typedef enum
{
FIND,
ENTER
}
ACTION;
typedef struct entry
{
char *key;
void *data;
}
ENTRY;
struct _ENTRY;
# 88 "/usr/include/search.h" 3 4
extern ENTRY *hsearch (ENTRY __item, ACTION __action) __attribute__ ((__nothrow__));
extern int hcreate (size_t __nel) __attribute__ ((__nothrow__));
extern void hdestroy (void) __attribute__ ((__nothrow__));
# 119 "/usr/include/search.h" 3 4
typedef enum
{
preorder,
postorder,
endorder,
leaf
}
VISIT;
extern void *tsearch (__const void *__key, void **__rootp,
__compar_fn_t __compar);
extern void *tfind (__const void *__key, void *__const *__rootp,
__compar_fn_t __compar);
extern void *tdelete (__const void *__restrict __key,
void **__restrict __rootp,
__compar_fn_t __compar);
typedef void (*__action_fn_t) (__const void *__nodep, VISIT __value,
int __level);
extern void twalk (__const void *__root, __action_fn_t __action);
# 165 "/usr/include/search.h" 3 4
extern void *lfind (__const void *__key, __const void *__base,
size_t *__nmemb, size_t __size, __compar_fn_t __compar);
extern void *lsearch (__const void *__key, void *__base,
size_t *__nmemb, size_t __size, __compar_fn_t __compar);
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_SEARCH_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: strings.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/strings.h" 1 3 4
# 27 "/usr/include/strings.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 28 "/usr/include/strings.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 30 "/usr/include/strings.h" 2 3 4
extern int bcmp (__const void *__s1, __const void *__s2, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__));
extern void bcopy (__const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__));
extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__));
extern int ffs (int __i) __attribute__ ((__nothrow__)) __attribute__ ((const));
extern char *index (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__));
extern char *rindex (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__));
extern int strcasecmp (__const char *__s1, __const char *__s2)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__));
extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__));
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_STRINGS_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: unistd.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/unistd.h" 1 3 4
# 26 "/usr/include/unistd.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 27 "/usr/include/unistd.h" 2 3 4
# 173 "/usr/include/unistd.h" 3 4
# 1 "/usr/include/bits/posix_opt.h" 1 3 4
# 174 "/usr/include/unistd.h" 2 3 4
# 188 "/usr/include/unistd.h" 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 189 "/usr/include/unistd.h" 2 3 4
typedef __ssize_t ssize_t;
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 198 "/usr/include/unistd.h" 2 3 4
typedef __gid_t gid_t;
typedef __uid_t uid_t;
typedef __off_t off_t;
# 226 "/usr/include/unistd.h" 3 4
typedef __useconds_t useconds_t;
typedef __pid_t pid_t;
typedef __intptr_t intptr_t;
typedef __socklen_t socklen_t;
# 258 "/usr/include/unistd.h" 3 4
extern int access (__const char *__name, int __type) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 301 "/usr/include/unistd.h" 3 4
extern __off_t lseek (int __fd, __off_t __offset, int __whence) __attribute__ ((__nothrow__));
# 320 "/usr/include/unistd.h" 3 4
extern int close (int __fd);
extern ssize_t read (int __fd, void *__buf, size_t __nbytes) ;
extern ssize_t write (int __fd, __const void *__buf, size_t __n) ;
# 384 "/usr/include/unistd.h" 3 4
extern int pipe (int __pipedes[2]) __attribute__ ((__nothrow__)) ;
# 393 "/usr/include/unistd.h" 3 4
extern unsigned int alarm (unsigned int __seconds) __attribute__ ((__nothrow__));
# 405 "/usr/include/unistd.h" 3 4
extern unsigned int sleep (unsigned int __seconds);
extern __useconds_t ualarm (__useconds_t __value, __useconds_t __interval)
__attribute__ ((__nothrow__));
extern int usleep (__useconds_t __useconds);
# 429 "/usr/include/unistd.h" 3 4
extern int pause (void);
extern int chown (__const char *__file, __uid_t __owner, __gid_t __group)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern int fchown (int __fd, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__)) ;
extern int lchown (__const char *__file, __uid_t __owner, __gid_t __group)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
# 457 "/usr/include/unistd.h" 3 4
extern int chdir (__const char *__path) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern int fchdir (int __fd) __attribute__ ((__nothrow__)) ;
# 471 "/usr/include/unistd.h" 3 4
extern char *getcwd (char *__buf, size_t __size) __attribute__ ((__nothrow__)) ;
# 484 "/usr/include/unistd.h" 3 4
extern char *getwd (char *__buf)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)) ;
extern int dup (int __fd) __attribute__ ((__nothrow__)) ;
extern int dup2 (int __fd, int __fd2) __attribute__ ((__nothrow__));
extern char **__environ;
extern int execve (__const char *__path, char *__const __argv[],
char *__const __envp[]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 516 "/usr/include/unistd.h" 3 4
extern int execv (__const char *__path, char *__const __argv[])
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int execle (__const char *__path, __const char *__arg, ...)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int execl (__const char *__path, __const char *__arg, ...)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int execvp (__const char *__file, char *__const __argv[])
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int execlp (__const char *__file, __const char *__arg, ...)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int nice (int __inc) __attribute__ ((__nothrow__)) ;
extern void _exit (int __status) __attribute__ ((__noreturn__));
# 1 "/usr/include/bits/confname.h" 1 3 4
# 26 "/usr/include/bits/confname.h" 3 4
enum
{
_PC_LINK_MAX,
_PC_MAX_CANON,
_PC_MAX_INPUT,
_PC_NAME_MAX,
_PC_PATH_MAX,
_PC_PIPE_BUF,
_PC_CHOWN_RESTRICTED,
_PC_NO_TRUNC,
_PC_VDISABLE,
_PC_SYNC_IO,
_PC_ASYNC_IO,
_PC_PRIO_IO,
_PC_SOCK_MAXBUF,
_PC_FILESIZEBITS,
_PC_REC_INCR_XFER_SIZE,
_PC_REC_MAX_XFER_SIZE,
_PC_REC_MIN_XFER_SIZE,
_PC_REC_XFER_ALIGN,
_PC_ALLOC_SIZE_MIN,
_PC_SYMLINK_MAX,
_PC_2_SYMLINKS
};
enum
{
_SC_ARG_MAX,
_SC_CHILD_MAX,
_SC_CLK_TCK,
_SC_NGROUPS_MAX,
_SC_OPEN_MAX,
_SC_STREAM_MAX,
_SC_TZNAME_MAX,
_SC_JOB_CONTROL,
_SC_SAVED_IDS,
_SC_REALTIME_SIGNALS,
_SC_PRIORITY_SCHEDULING,
_SC_TIMERS,
_SC_ASYNCHRONOUS_IO,
_SC_PRIORITIZED_IO,
_SC_SYNCHRONIZED_IO,
_SC_FSYNC,
_SC_MAPPED_FILES,
_SC_MEMLOCK,
_SC_MEMLOCK_RANGE,
_SC_MEMORY_PROTECTION,
_SC_MESSAGE_PASSING,
_SC_SEMAPHORES,
_SC_SHARED_MEMORY_OBJECTS,
_SC_AIO_LISTIO_MAX,
_SC_AIO_MAX,
_SC_AIO_PRIO_DELTA_MAX,
_SC_DELAYTIMER_MAX,
_SC_MQ_OPEN_MAX,
_SC_MQ_PRIO_MAX,
_SC_VERSION,
_SC_PAGESIZE,
_SC_RTSIG_MAX,
_SC_SEM_NSEMS_MAX,
_SC_SEM_VALUE_MAX,
_SC_SIGQUEUE_MAX,
_SC_TIMER_MAX,
_SC_BC_BASE_MAX,
_SC_BC_DIM_MAX,
_SC_BC_SCALE_MAX,
_SC_BC_STRING_MAX,
_SC_COLL_WEIGHTS_MAX,
_SC_EQUIV_CLASS_MAX,
_SC_EXPR_NEST_MAX,
_SC_LINE_MAX,
_SC_RE_DUP_MAX,
_SC_CHARCLASS_NAME_MAX,
_SC_2_VERSION,
_SC_2_C_BIND,
_SC_2_C_DEV,
_SC_2_FORT_DEV,
_SC_2_FORT_RUN,
_SC_2_SW_DEV,
_SC_2_LOCALEDEF,
_SC_PII,
_SC_PII_XTI,
_SC_PII_SOCKET,
_SC_PII_INTERNET,
_SC_PII_OSI,
_SC_POLL,
_SC_SELECT,
_SC_UIO_MAXIOV,
_SC_IOV_MAX = _SC_UIO_MAXIOV,
_SC_PII_INTERNET_STREAM,
_SC_PII_INTERNET_DGRAM,
_SC_PII_OSI_COTS,
_SC_PII_OSI_CLTS,
_SC_PII_OSI_M,
_SC_T_IOV_MAX,
_SC_THREADS,
_SC_THREAD_SAFE_FUNCTIONS,
_SC_GETGR_R_SIZE_MAX,
_SC_GETPW_R_SIZE_MAX,
_SC_LOGIN_NAME_MAX,
_SC_TTY_NAME_MAX,
_SC_THREAD_DESTRUCTOR_ITERATIONS,
_SC_THREAD_KEYS_MAX,
_SC_THREAD_STACK_MIN,
_SC_THREAD_THREADS_MAX,
_SC_THREAD_ATTR_STACKADDR,
_SC_THREAD_ATTR_STACKSIZE,
_SC_THREAD_PRIORITY_SCHEDULING,
_SC_THREAD_PRIO_INHERIT,
_SC_THREAD_PRIO_PROTECT,
_SC_THREAD_PROCESS_SHARED,
_SC_NPROCESSORS_CONF,
_SC_NPROCESSORS_ONLN,
_SC_PHYS_PAGES,
_SC_AVPHYS_PAGES,
_SC_ATEXIT_MAX,
_SC_PASS_MAX,
_SC_XOPEN_VERSION,
_SC_XOPEN_XCU_VERSION,
_SC_XOPEN_UNIX,
_SC_XOPEN_CRYPT,
_SC_XOPEN_ENH_I18N,
_SC_XOPEN_SHM,
_SC_2_CHAR_TERM,
_SC_2_C_VERSION,
_SC_2_UPE,
_SC_XOPEN_XPG2,
_SC_XOPEN_XPG3,
_SC_XOPEN_XPG4,
_SC_CHAR_BIT,
_SC_CHAR_MAX,
_SC_CHAR_MIN,
_SC_INT_MAX,
_SC_INT_MIN,
_SC_LONG_BIT,
_SC_WORD_BIT,
_SC_MB_LEN_MAX,
_SC_NZERO,
_SC_SSIZE_MAX,
_SC_SCHAR_MAX,
_SC_SCHAR_MIN,
_SC_SHRT_MAX,
_SC_SHRT_MIN,
_SC_UCHAR_MAX,
_SC_UINT_MAX,
_SC_ULONG_MAX,
_SC_USHRT_MAX,
_SC_NL_ARGMAX,
_SC_NL_LANGMAX,
_SC_NL_MSGMAX,
_SC_NL_NMAX,
_SC_NL_SETMAX,
_SC_NL_TEXTMAX,
_SC_XBS5_ILP32_OFF32,
_SC_XBS5_ILP32_OFFBIG,
_SC_XBS5_LP64_OFF64,
_SC_XBS5_LPBIG_OFFBIG,
_SC_XOPEN_LEGACY,
_SC_XOPEN_REALTIME,
_SC_XOPEN_REALTIME_THREADS,
_SC_ADVISORY_INFO,
_SC_BARRIERS,
_SC_BASE,
_SC_C_LANG_SUPPORT,
_SC_C_LANG_SUPPORT_R,
_SC_CLOCK_SELECTION,
_SC_CPUTIME,
_SC_THREAD_CPUTIME,
_SC_DEVICE_IO,
_SC_DEVICE_SPECIFIC,
_SC_DEVICE_SPECIFIC_R,
_SC_FD_MGMT,
_SC_FIFO,
_SC_PIPE,
_SC_FILE_ATTRIBUTES,
_SC_FILE_LOCKING,
_SC_FILE_SYSTEM,
_SC_MONOTONIC_CLOCK,
_SC_MULTI_PROCESS,
_SC_SINGLE_PROCESS,
_SC_NETWORKING,
_SC_READER_WRITER_LOCKS,
_SC_SPIN_LOCKS,
_SC_REGEXP,
_SC_REGEX_VERSION,
_SC_SHELL,
_SC_SIGNALS,
_SC_SPAWN,
_SC_SPORADIC_SERVER,
_SC_THREAD_SPORADIC_SERVER,
_SC_SYSTEM_DATABASE,
_SC_SYSTEM_DATABASE_R,
_SC_TIMEOUTS,
_SC_TYPED_MEMORY_OBJECTS,
_SC_USER_GROUPS,
_SC_USER_GROUPS_R,
_SC_2_PBS,
_SC_2_PBS_ACCOUNTING,
_SC_2_PBS_LOCATE,
_SC_2_PBS_MESSAGE,
_SC_2_PBS_TRACK,
_SC_SYMLOOP_MAX,
_SC_STREAMS,
_SC_2_PBS_CHECKPOINT,
_SC_V6_ILP32_OFF32,
_SC_V6_ILP32_OFFBIG,
_SC_V6_LP64_OFF64,
_SC_V6_LPBIG_OFFBIG,
_SC_HOST_NAME_MAX,
_SC_TRACE,
_SC_TRACE_EVENT_FILTER,
_SC_TRACE_INHERIT,
_SC_TRACE_LOG,
_SC_LEVEL1_ICACHE_SIZE,
_SC_LEVEL1_ICACHE_ASSOC,
_SC_LEVEL1_ICACHE_LINESIZE,
_SC_LEVEL1_DCACHE_SIZE,
_SC_LEVEL1_DCACHE_ASSOC,
_SC_LEVEL1_DCACHE_LINESIZE,
_SC_LEVEL2_CACHE_SIZE,
_SC_LEVEL2_CACHE_ASSOC,
_SC_LEVEL2_CACHE_LINESIZE,
_SC_LEVEL3_CACHE_SIZE,
_SC_LEVEL3_CACHE_ASSOC,
_SC_LEVEL3_CACHE_LINESIZE,
_SC_LEVEL4_CACHE_SIZE,
_SC_LEVEL4_CACHE_ASSOC,
_SC_LEVEL4_CACHE_LINESIZE,
_SC_IPV6 = _SC_LEVEL1_ICACHE_SIZE + 50,
_SC_RAW_SOCKETS
};
enum
{
_CS_PATH,
_CS_V6_WIDTH_RESTRICTED_ENVS,
_CS_GNU_LIBC_VERSION,
_CS_GNU_LIBPTHREAD_VERSION,
_CS_LFS_CFLAGS = 1000,
_CS_LFS_LDFLAGS,
_CS_LFS_LIBS,
_CS_LFS_LINTFLAGS,
_CS_LFS64_CFLAGS,
_CS_LFS64_LDFLAGS,
_CS_LFS64_LIBS,
_CS_LFS64_LINTFLAGS,
_CS_XBS5_ILP32_OFF32_CFLAGS = 1100,
_CS_XBS5_ILP32_OFF32_LDFLAGS,
_CS_XBS5_ILP32_OFF32_LIBS,
_CS_XBS5_ILP32_OFF32_LINTFLAGS,
_CS_XBS5_ILP32_OFFBIG_CFLAGS,
_CS_XBS5_ILP32_OFFBIG_LDFLAGS,
_CS_XBS5_ILP32_OFFBIG_LIBS,
_CS_XBS5_ILP32_OFFBIG_LINTFLAGS,
_CS_XBS5_LP64_OFF64_CFLAGS,
_CS_XBS5_LP64_OFF64_LDFLAGS,
_CS_XBS5_LP64_OFF64_LIBS,
_CS_XBS5_LP64_OFF64_LINTFLAGS,
_CS_XBS5_LPBIG_OFFBIG_CFLAGS,
_CS_XBS5_LPBIG_OFFBIG_LDFLAGS,
_CS_XBS5_LPBIG_OFFBIG_LIBS,
_CS_XBS5_LPBIG_OFFBIG_LINTFLAGS,
_CS_POSIX_V6_ILP32_OFF32_CFLAGS,
_CS_POSIX_V6_ILP32_OFF32_LDFLAGS,
_CS_POSIX_V6_ILP32_OFF32_LIBS,
_CS_POSIX_V6_ILP32_OFF32_LINTFLAGS,
_CS_POSIX_V6_ILP32_OFFBIG_CFLAGS,
_CS_POSIX_V6_ILP32_OFFBIG_LDFLAGS,
_CS_POSIX_V6_ILP32_OFFBIG_LIBS,
_CS_POSIX_V6_ILP32_OFFBIG_LINTFLAGS,
_CS_POSIX_V6_LP64_OFF64_CFLAGS,
_CS_POSIX_V6_LP64_OFF64_LDFLAGS,
_CS_POSIX_V6_LP64_OFF64_LIBS,
_CS_POSIX_V6_LP64_OFF64_LINTFLAGS,
_CS_POSIX_V6_LPBIG_OFFBIG_CFLAGS,
_CS_POSIX_V6_LPBIG_OFFBIG_LDFLAGS,
_CS_POSIX_V6_LPBIG_OFFBIG_LIBS,
_CS_POSIX_V6_LPBIG_OFFBIG_LINTFLAGS
};
# 555 "/usr/include/unistd.h" 2 3 4
extern long int pathconf (__const char *__path, int __name)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern long int fpathconf (int __fd, int __name) __attribute__ ((__nothrow__));
extern long int sysconf (int __name) __attribute__ ((__nothrow__));
extern size_t confstr (int __name, char *__buf, size_t __len) __attribute__ ((__nothrow__));
extern __pid_t getpid (void) __attribute__ ((__nothrow__));
extern __pid_t getppid (void) __attribute__ ((__nothrow__));
extern __pid_t getpgrp (void) __attribute__ ((__nothrow__));
# 591 "/usr/include/unistd.h" 3 4
extern __pid_t __getpgid (__pid_t __pid) __attribute__ ((__nothrow__));
# 600 "/usr/include/unistd.h" 3 4
extern int setpgid (__pid_t __pid, __pid_t __pgid) __attribute__ ((__nothrow__));
# 617 "/usr/include/unistd.h" 3 4
extern int setpgrp (void) __attribute__ ((__nothrow__));
# 634 "/usr/include/unistd.h" 3 4
extern __pid_t setsid (void) __attribute__ ((__nothrow__));
extern __uid_t getuid (void) __attribute__ ((__nothrow__));
extern __uid_t geteuid (void) __attribute__ ((__nothrow__));
extern __gid_t getgid (void) __attribute__ ((__nothrow__));
extern __gid_t getegid (void) __attribute__ ((__nothrow__));
extern int getgroups (int __size, __gid_t __list[]) __attribute__ ((__nothrow__)) ;
# 667 "/usr/include/unistd.h" 3 4
extern int setuid (__uid_t __uid) __attribute__ ((__nothrow__));
extern int setreuid (__uid_t __ruid, __uid_t __euid) __attribute__ ((__nothrow__));
extern int seteuid (__uid_t __uid) __attribute__ ((__nothrow__));
extern int setgid (__gid_t __gid) __attribute__ ((__nothrow__));
extern int setregid (__gid_t __rgid, __gid_t __egid) __attribute__ ((__nothrow__));
extern int setegid (__gid_t __gid) __attribute__ ((__nothrow__));
# 723 "/usr/include/unistd.h" 3 4
extern __pid_t fork (void) __attribute__ ((__nothrow__));
extern __pid_t vfork (void) __attribute__ ((__nothrow__));
extern char *ttyname (int __fd) __attribute__ ((__nothrow__));
extern int ttyname_r (int __fd, char *__buf, size_t __buflen)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))) ;
extern int isatty (int __fd) __attribute__ ((__nothrow__));
extern int ttyslot (void) __attribute__ ((__nothrow__));
extern int link (__const char *__from, __const char *__to)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))) ;
# 769 "/usr/include/unistd.h" 3 4
extern int symlink (__const char *__from, __const char *__to)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))) ;
extern ssize_t readlink (__const char *__restrict __path,
char *__restrict __buf, size_t __len)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))) ;
# 792 "/usr/include/unistd.h" 3 4
extern int unlink (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 801 "/usr/include/unistd.h" 3 4
extern int rmdir (__const char *__path) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern __pid_t tcgetpgrp (int __fd) __attribute__ ((__nothrow__));
extern int tcsetpgrp (int __fd, __pid_t __pgrp_id) __attribute__ ((__nothrow__));
extern char *getlogin (void);
extern int getlogin_r (char *__name, size_t __name_len) __attribute__ ((__nonnull__ (1)));
extern int setlogin (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 837 "/usr/include/unistd.h" 3 4
# 1 "/usr/include/getopt.h" 1 3 4
# 59 "/usr/include/getopt.h" 3 4
extern char *optarg;
# 73 "/usr/include/getopt.h" 3 4
extern int optind;
extern int opterr;
extern int optopt;
# 152 "/usr/include/getopt.h" 3 4
extern int getopt (int ___argc, char *const *___argv, const char *__shortopts)
__attribute__ ((__nothrow__));
# 838 "/usr/include/unistd.h" 2 3 4
extern int gethostname (char *__name, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int sethostname (__const char *__name, size_t __len)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern int sethostid (long int __id) __attribute__ ((__nothrow__)) ;
extern int getdomainname (char *__name, size_t __len)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern int setdomainname (__const char *__name, size_t __len)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern int vhangup (void) __attribute__ ((__nothrow__));
extern int revoke (__const char *__file) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern int profil (unsigned short int *__sample_buffer, size_t __size,
size_t __offset, unsigned int __scale)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int acct (__const char *__name) __attribute__ ((__nothrow__));
extern char *getusershell (void) __attribute__ ((__nothrow__));
extern void endusershell (void) __attribute__ ((__nothrow__));
extern void setusershell (void) __attribute__ ((__nothrow__));
extern int daemon (int __nochdir, int __noclose) __attribute__ ((__nothrow__)) ;
extern int chroot (__const char *__path) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern char *getpass (__const char *__prompt) __attribute__ ((__nonnull__ (1)));
# 923 "/usr/include/unistd.h" 3 4
extern int fsync (int __fd);
extern long int gethostid (void);
extern void sync (void) __attribute__ ((__nothrow__));
extern int getpagesize (void) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern int getdtablesize (void) __attribute__ ((__nothrow__));
extern int truncate (__const char *__file, __off_t __length)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
# 970 "/usr/include/unistd.h" 3 4
extern int ftruncate (int __fd, __off_t __length) __attribute__ ((__nothrow__)) ;
# 990 "/usr/include/unistd.h" 3 4
extern int brk (void *__addr) __attribute__ ((__nothrow__)) ;
extern void *sbrk (intptr_t __delta) __attribute__ ((__nothrow__));
# 1011 "/usr/include/unistd.h" 3 4
extern long int syscall (long int __sysno, ...) __attribute__ ((__nothrow__));
# 1034 "/usr/include/unistd.h" 3 4
extern int lockf (int __fd, int __cmd, __off_t __len) ;
# 1065 "/usr/include/unistd.h" 3 4
extern int fdatasync (int __fildes);
# 1103 "/usr/include/unistd.h" 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_UNISTD_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/sysinfo.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/sys/sysinfo.h" 1 3 4
# 22 "/usr/include/sys/sysinfo.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 23 "/usr/include/sys/sysinfo.h" 2 3 4
# 1 "/usr/include/linux/kernel.h" 1 3 4
# 10 "/usr/include/linux/kernel.h" 3 4
struct sysinfo {
long uptime;
unsigned long loads[3];
unsigned long totalram;
unsigned long freeram;
unsigned long sharedram;
unsigned long bufferram;
unsigned long totalswap;
unsigned long freeswap;
unsigned short procs;
unsigned short pad;
unsigned long totalhigh;
unsigned long freehigh;
unsigned int mem_unit;
char _f[20-2*sizeof(long)-sizeof(int)];
};
# 26 "/usr/include/sys/sysinfo.h" 2 3 4
extern int sysinfo (struct sysinfo *__info) __attribute__ ((__nothrow__));
extern int get_nprocs_conf (void) __attribute__ ((__nothrow__));
extern int get_nprocs (void) __attribute__ ((__nothrow__));
extern long int get_phys_pages (void) __attribute__ ((__nothrow__));
extern long int get_avphys_pages (void) __attribute__ ((__nothrow__));
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_SYS_SYSINFO_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: machine/endian.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Possible ERROR while running preprocessor: /tmp/petsc-5zlcDX/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory
compilation terminated.
ret = 256
error message = {/tmp/petsc-5zlcDX/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory
compilation terminated.
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <machine/endian.h>
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/param.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/sys/param.h" 1 3 4
# 22 "/usr/include/sys/param.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 1 3 4
# 34 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/syslimits.h" 1 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 1 3 4
# 169 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 3 4
# 1 "/usr/include/limits.h" 1 3 4
# 27 "/usr/include/limits.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 28 "/usr/include/limits.h" 2 3 4
# 145 "/usr/include/limits.h" 3 4
# 1 "/usr/include/bits/posix1_lim.h" 1 3 4
# 153 "/usr/include/bits/posix1_lim.h" 3 4
# 1 "/usr/include/bits/local_lim.h" 1 3 4
# 36 "/usr/include/bits/local_lim.h" 3 4
# 1 "/usr/include/linux/limits.h" 1 3 4
# 37 "/usr/include/bits/local_lim.h" 2 3 4
# 154 "/usr/include/bits/posix1_lim.h" 2 3 4
# 146 "/usr/include/limits.h" 2 3 4
# 1 "/usr/include/bits/posix2_lim.h" 1 3 4
# 150 "/usr/include/limits.h" 2 3 4
# 170 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 2 3 4
# 8 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/syslimits.h" 2 3 4
# 35 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 2 3 4
# 23 "/usr/include/sys/param.h" 2 3 4
# 1 "/usr/include/linux/param.h" 1 3 4
# 1 "/usr/include/asm/param.h" 1 3 4
# 5 "/usr/include/linux/param.h" 2 3 4
# 25 "/usr/include/sys/param.h" 2 3 4
# 42 "/usr/include/sys/param.h" 3 4
# 1 "/usr/include/sys/types.h" 1 3 4
# 29 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 32 "/usr/include/sys/types.h" 2 3 4
typedef __u_char u_char;
typedef __u_short u_short;
typedef __u_int u_int;
typedef __u_long u_long;
typedef __quad_t quad_t;
typedef __u_quad_t u_quad_t;
typedef __fsid_t fsid_t;
typedef __loff_t loff_t;
typedef __ino_t ino_t;
# 62 "/usr/include/sys/types.h" 3 4
typedef __dev_t dev_t;
typedef __gid_t gid_t;
typedef __mode_t mode_t;
typedef __nlink_t nlink_t;
typedef __uid_t uid_t;
typedef __off_t off_t;
# 100 "/usr/include/sys/types.h" 3 4
typedef __pid_t pid_t;
typedef __id_t id_t;
typedef __ssize_t ssize_t;
typedef __daddr_t daddr_t;
typedef __caddr_t caddr_t;
typedef __key_t key_t;
# 133 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/time.h" 1 3 4
# 75 "/usr/include/time.h" 3 4
typedef __time_t time_t;
# 93 "/usr/include/time.h" 3 4
typedef __clockid_t clockid_t;
# 105 "/usr/include/time.h" 3 4
typedef __timer_t timer_t;
# 134 "/usr/include/sys/types.h" 2 3 4
# 147 "/usr/include/sys/types.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 148 "/usr/include/sys/types.h" 2 3 4
typedef unsigned long int ulong;
typedef unsigned short int ushort;
typedef unsigned int uint;
# 195 "/usr/include/sys/types.h" 3 4
typedef int int8_t __attribute__ ((__mode__ (__QI__)));
typedef int int16_t __attribute__ ((__mode__ (__HI__)));
typedef int int32_t __attribute__ ((__mode__ (__SI__)));
typedef int int64_t __attribute__ ((__mode__ (__DI__)));
typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__)));
typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__)));
typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__)));
typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__)));
typedef int register_t __attribute__ ((__mode__ (__word__)));
# 217 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/endian.h" 1 3 4
# 37 "/usr/include/endian.h" 3 4
# 1 "/usr/include/bits/endian.h" 1 3 4
# 38 "/usr/include/endian.h" 2 3 4
# 218 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/select.h" 1 3 4
# 31 "/usr/include/sys/select.h" 3 4
# 1 "/usr/include/bits/select.h" 1 3 4
# 32 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/sigset.h" 1 3 4
# 24 "/usr/include/bits/sigset.h" 3 4
typedef int __sig_atomic_t;
typedef struct
{
unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))];
} __sigset_t;
# 35 "/usr/include/sys/select.h" 2 3 4
typedef __sigset_t sigset_t;
# 1 "/usr/include/time.h" 1 3 4
# 121 "/usr/include/time.h" 3 4
struct timespec
{
__time_t tv_sec;
long int tv_nsec;
};
# 45 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/time.h" 1 3 4
# 69 "/usr/include/bits/time.h" 3 4
struct timeval
{
__time_t tv_sec;
__suseconds_t tv_usec;
};
# 47 "/usr/include/sys/select.h" 2 3 4
typedef __suseconds_t suseconds_t;
typedef long int __fd_mask;
# 67 "/usr/include/sys/select.h" 3 4
typedef struct
{
__fd_mask __fds_bits[1024 / (8 * sizeof (__fd_mask))];
} fd_set;
typedef __fd_mask fd_mask;
# 99 "/usr/include/sys/select.h" 3 4
# 109 "/usr/include/sys/select.h" 3 4
extern int select (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
struct timeval *__restrict __timeout);
# 121 "/usr/include/sys/select.h" 3 4
extern int pselect (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
const struct timespec *__restrict __timeout,
const __sigset_t *__restrict __sigmask);
# 221 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/sysmacros.h" 1 3 4
# 30 "/usr/include/sys/sysmacros.h" 3 4
__extension__
extern unsigned int gnu_dev_major (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned int gnu_dev_minor (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned long long int gnu_dev_makedev (unsigned int __major,
unsigned int __minor)
__attribute__ ((__nothrow__));
# 224 "/usr/include/sys/types.h" 2 3 4
# 235 "/usr/include/sys/types.h" 3 4
typedef __blkcnt_t blkcnt_t;
typedef __fsblkcnt_t fsblkcnt_t;
typedef __fsfilcnt_t fsfilcnt_t;
# 270 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/pthreadtypes.h" 1 3 4
# 23 "/usr/include/bits/pthreadtypes.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 24 "/usr/include/bits/pthreadtypes.h" 2 3 4
# 50 "/usr/include/bits/pthreadtypes.h" 3 4
typedef unsigned long int pthread_t;
typedef union
{
char __size[36];
long int __align;
} pthread_attr_t;
# 67 "/usr/include/bits/pthreadtypes.h" 3 4
typedef struct __pthread_internal_slist
{
struct __pthread_internal_slist *__next;
} __pthread_slist_t;
typedef union
{
struct __pthread_mutex_s
{
int __lock;
unsigned int __count;
int __owner;
int __kind;
unsigned int __nusers;
__extension__ union
{
int __spins;
__pthread_slist_t __list;
};
} __data;
char __size[24];
long int __align;
} pthread_mutex_t;
typedef union
{
char __size[4];
int __align;
} pthread_mutexattr_t;
typedef union
{
struct
{
int __lock;
unsigned int __futex;
__extension__ unsigned long long int __total_seq;
__extension__ unsigned long long int __wakeup_seq;
__extension__ unsigned long long int __woken_seq;
void *__mutex;
unsigned int __nwaiters;
unsigned int __broadcast_seq;
} __data;
char __size[48];
__extension__ long long int __align;
} pthread_cond_t;
typedef union
{
char __size[4];
int __align;
} pthread_condattr_t;
typedef unsigned int pthread_key_t;
typedef int pthread_once_t;
typedef union
{
# 170 "/usr/include/bits/pthreadtypes.h" 3 4
struct
{
int __lock;
unsigned int __nr_readers;
unsigned int __readers_wakeup;
unsigned int __writer_wakeup;
unsigned int __nr_readers_queued;
unsigned int __nr_writers_queued;
unsigned char __flags;
unsigned char __shared;
unsigned char __pad1;
unsigned char __pad2;
int __writer;
} __data;
char __size[32];
long int __align;
} pthread_rwlock_t;
typedef union
{
char __size[8];
long int __align;
} pthread_rwlockattr_t;
typedef volatile int pthread_spinlock_t;
typedef union
{
char __size[20];
long int __align;
} pthread_barrier_t;
typedef union
{
char __size[4];
int __align;
} pthread_barrierattr_t;
# 271 "/usr/include/sys/types.h" 2 3 4
# 43 "/usr/include/sys/param.h" 2 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_SYS_PARAM_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/procfs.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/sys/procfs.h" 1 3 4
# 31 "/usr/include/sys/procfs.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 32 "/usr/include/sys/procfs.h" 2 3 4
# 1 "/usr/include/sys/time.h" 1 3 4
# 25 "/usr/include/sys/time.h" 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 26 "/usr/include/sys/time.h" 2 3 4
# 1 "/usr/include/time.h" 1 3 4
# 75 "/usr/include/time.h" 3 4
typedef __time_t time_t;
# 28 "/usr/include/sys/time.h" 2 3 4
# 1 "/usr/include/bits/time.h" 1 3 4
# 69 "/usr/include/bits/time.h" 3 4
struct timeval
{
__time_t tv_sec;
__suseconds_t tv_usec;
};
# 30 "/usr/include/sys/time.h" 2 3 4
# 1 "/usr/include/sys/select.h" 1 3 4
# 31 "/usr/include/sys/select.h" 3 4
# 1 "/usr/include/bits/select.h" 1 3 4
# 32 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/sigset.h" 1 3 4
# 24 "/usr/include/bits/sigset.h" 3 4
typedef int __sig_atomic_t;
typedef struct
{
unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))];
} __sigset_t;
# 35 "/usr/include/sys/select.h" 2 3 4
typedef __sigset_t sigset_t;
# 1 "/usr/include/time.h" 1 3 4
# 121 "/usr/include/time.h" 3 4
struct timespec
{
__time_t tv_sec;
long int tv_nsec;
};
# 45 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/time.h" 1 3 4
# 47 "/usr/include/sys/select.h" 2 3 4
typedef __suseconds_t suseconds_t;
typedef long int __fd_mask;
# 67 "/usr/include/sys/select.h" 3 4
typedef struct
{
__fd_mask __fds_bits[1024 / (8 * sizeof (__fd_mask))];
} fd_set;
typedef __fd_mask fd_mask;
# 99 "/usr/include/sys/select.h" 3 4
# 109 "/usr/include/sys/select.h" 3 4
extern int select (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
struct timeval *__restrict __timeout);
# 121 "/usr/include/sys/select.h" 3 4
extern int pselect (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
const struct timespec *__restrict __timeout,
const __sigset_t *__restrict __sigmask);
# 32 "/usr/include/sys/time.h" 2 3 4
# 57 "/usr/include/sys/time.h" 3 4
struct timezone
{
int tz_minuteswest;
int tz_dsttime;
};
typedef struct timezone *__restrict __timezone_ptr_t;
# 73 "/usr/include/sys/time.h" 3 4
extern int gettimeofday (struct timeval *__restrict __tv,
__timezone_ptr_t __tz) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int settimeofday (__const struct timeval *__tv,
__const struct timezone *__tz)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int adjtime (__const struct timeval *__delta,
struct timeval *__olddelta) __attribute__ ((__nothrow__));
enum __itimer_which
{
ITIMER_REAL = 0,
ITIMER_VIRTUAL = 1,
ITIMER_PROF = 2
};
struct itimerval
{
struct timeval it_interval;
struct timeval it_value;
};
typedef int __itimer_which_t;
extern int getitimer (__itimer_which_t __which,
struct itimerval *__value) __attribute__ ((__nothrow__));
extern int setitimer (__itimer_which_t __which,
__const struct itimerval *__restrict __new,
struct itimerval *__restrict __old) __attribute__ ((__nothrow__));
extern int utimes (__const char *__file, __const struct timeval __tvp[2])
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int lutimes (__const char *__file, __const struct timeval __tvp[2])
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int futimes (int __fd, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__));
# 191 "/usr/include/sys/time.h" 3 4
# 33 "/usr/include/sys/procfs.h" 2 3 4
# 1 "/usr/include/sys/types.h" 1 3 4
# 29 "/usr/include/sys/types.h" 3 4
typedef __u_char u_char;
typedef __u_short u_short;
typedef __u_int u_int;
typedef __u_long u_long;
typedef __quad_t quad_t;
typedef __u_quad_t u_quad_t;
typedef __fsid_t fsid_t;
typedef __loff_t loff_t;
typedef __ino_t ino_t;
# 62 "/usr/include/sys/types.h" 3 4
typedef __dev_t dev_t;
typedef __gid_t gid_t;
typedef __mode_t mode_t;
typedef __nlink_t nlink_t;
typedef __uid_t uid_t;
typedef __off_t off_t;
# 100 "/usr/include/sys/types.h" 3 4
typedef __pid_t pid_t;
typedef __id_t id_t;
typedef __ssize_t ssize_t;
typedef __daddr_t daddr_t;
typedef __caddr_t caddr_t;
typedef __key_t key_t;
# 133 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/time.h" 1 3 4
# 93 "/usr/include/time.h" 3 4
typedef __clockid_t clockid_t;
# 105 "/usr/include/time.h" 3 4
typedef __timer_t timer_t;
# 134 "/usr/include/sys/types.h" 2 3 4
# 147 "/usr/include/sys/types.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 148 "/usr/include/sys/types.h" 2 3 4
typedef unsigned long int ulong;
typedef unsigned short int ushort;
typedef unsigned int uint;
# 195 "/usr/include/sys/types.h" 3 4
typedef int int8_t __attribute__ ((__mode__ (__QI__)));
typedef int int16_t __attribute__ ((__mode__ (__HI__)));
typedef int int32_t __attribute__ ((__mode__ (__SI__)));
typedef int int64_t __attribute__ ((__mode__ (__DI__)));
typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__)));
typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__)));
typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__)));
typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__)));
typedef int register_t __attribute__ ((__mode__ (__word__)));
# 217 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/endian.h" 1 3 4
# 37 "/usr/include/endian.h" 3 4
# 1 "/usr/include/bits/endian.h" 1 3 4
# 38 "/usr/include/endian.h" 2 3 4
# 218 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/sysmacros.h" 1 3 4
# 30 "/usr/include/sys/sysmacros.h" 3 4
__extension__
extern unsigned int gnu_dev_major (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned int gnu_dev_minor (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned long long int gnu_dev_makedev (unsigned int __major,
unsigned int __minor)
__attribute__ ((__nothrow__));
# 224 "/usr/include/sys/types.h" 2 3 4
# 235 "/usr/include/sys/types.h" 3 4
typedef __blkcnt_t blkcnt_t;
typedef __fsblkcnt_t fsblkcnt_t;
typedef __fsfilcnt_t fsfilcnt_t;
# 270 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/pthreadtypes.h" 1 3 4
# 23 "/usr/include/bits/pthreadtypes.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 24 "/usr/include/bits/pthreadtypes.h" 2 3 4
# 50 "/usr/include/bits/pthreadtypes.h" 3 4
typedef unsigned long int pthread_t;
typedef union
{
char __size[36];
long int __align;
} pthread_attr_t;
# 67 "/usr/include/bits/pthreadtypes.h" 3 4
typedef struct __pthread_internal_slist
{
struct __pthread_internal_slist *__next;
} __pthread_slist_t;
typedef union
{
struct __pthread_mutex_s
{
int __lock;
unsigned int __count;
int __owner;
int __kind;
unsigned int __nusers;
__extension__ union
{
int __spins;
__pthread_slist_t __list;
};
} __data;
char __size[24];
long int __align;
} pthread_mutex_t;
typedef union
{
char __size[4];
int __align;
} pthread_mutexattr_t;
typedef union
{
struct
{
int __lock;
unsigned int __futex;
__extension__ unsigned long long int __total_seq;
__extension__ unsigned long long int __wakeup_seq;
__extension__ unsigned long long int __woken_seq;
void *__mutex;
unsigned int __nwaiters;
unsigned int __broadcast_seq;
} __data;
char __size[48];
__extension__ long long int __align;
} pthread_cond_t;
typedef union
{
char __size[4];
int __align;
} pthread_condattr_t;
typedef unsigned int pthread_key_t;
typedef int pthread_once_t;
typedef union
{
# 170 "/usr/include/bits/pthreadtypes.h" 3 4
struct
{
int __lock;
unsigned int __nr_readers;
unsigned int __readers_wakeup;
unsigned int __writer_wakeup;
unsigned int __nr_readers_queued;
unsigned int __nr_writers_queued;
unsigned char __flags;
unsigned char __shared;
unsigned char __pad1;
unsigned char __pad2;
int __writer;
} __data;
char __size[32];
long int __align;
} pthread_rwlock_t;
typedef union
{
char __size[8];
long int __align;
} pthread_rwlockattr_t;
typedef volatile int pthread_spinlock_t;
typedef union
{
char __size[20];
long int __align;
} pthread_barrier_t;
typedef union
{
char __size[4];
int __align;
} pthread_barrierattr_t;
# 271 "/usr/include/sys/types.h" 2 3 4
# 34 "/usr/include/sys/procfs.h" 2 3 4
# 1 "/usr/include/sys/user.h" 1 3 4
# 26 "/usr/include/sys/user.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 27 "/usr/include/sys/user.h" 2 3 4
# 1 "/usr/include/unistd.h" 1 3 4
# 28 "/usr/include/unistd.h" 3 4
# 173 "/usr/include/unistd.h" 3 4
# 1 "/usr/include/bits/posix_opt.h" 1 3 4
# 174 "/usr/include/unistd.h" 2 3 4
# 197 "/usr/include/unistd.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 198 "/usr/include/unistd.h" 2 3 4
# 226 "/usr/include/unistd.h" 3 4
typedef __useconds_t useconds_t;
# 238 "/usr/include/unistd.h" 3 4
typedef __intptr_t intptr_t;
typedef __socklen_t socklen_t;
# 258 "/usr/include/unistd.h" 3 4
extern int access (__const char *__name, int __type) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 301 "/usr/include/unistd.h" 3 4
extern __off_t lseek (int __fd, __off_t __offset, int __whence) __attribute__ ((__nothrow__));
# 320 "/usr/include/unistd.h" 3 4
extern int close (int __fd);
extern ssize_t read (int __fd, void *__buf, size_t __nbytes) ;
extern ssize_t write (int __fd, __const void *__buf, size_t __n) ;
# 384 "/usr/include/unistd.h" 3 4
extern int pipe (int __pipedes[2]) __attribute__ ((__nothrow__)) ;
# 393 "/usr/include/unistd.h" 3 4
extern unsigned int alarm (unsigned int __seconds) __attribute__ ((__nothrow__));
# 405 "/usr/include/unistd.h" 3 4
extern unsigned int sleep (unsigned int __seconds);
extern __useconds_t ualarm (__useconds_t __value, __useconds_t __interval)
__attribute__ ((__nothrow__));
extern int usleep (__useconds_t __useconds);
# 429 "/usr/include/unistd.h" 3 4
extern int pause (void);
extern int chown (__const char *__file, __uid_t __owner, __gid_t __group)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern int fchown (int __fd, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__)) ;
extern int lchown (__const char *__file, __uid_t __owner, __gid_t __group)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
# 457 "/usr/include/unistd.h" 3 4
extern int chdir (__const char *__path) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern int fchdir (int __fd) __attribute__ ((__nothrow__)) ;
# 471 "/usr/include/unistd.h" 3 4
extern char *getcwd (char *__buf, size_t __size) __attribute__ ((__nothrow__)) ;
# 484 "/usr/include/unistd.h" 3 4
extern char *getwd (char *__buf)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)) ;
extern int dup (int __fd) __attribute__ ((__nothrow__)) ;
extern int dup2 (int __fd, int __fd2) __attribute__ ((__nothrow__));
extern char **__environ;
extern int execve (__const char *__path, char *__const __argv[],
char *__const __envp[]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 516 "/usr/include/unistd.h" 3 4
extern int execv (__const char *__path, char *__const __argv[])
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int execle (__const char *__path, __const char *__arg, ...)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int execl (__const char *__path, __const char *__arg, ...)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int execvp (__const char *__file, char *__const __argv[])
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int execlp (__const char *__file, __const char *__arg, ...)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int nice (int __inc) __attribute__ ((__nothrow__)) ;
extern void _exit (int __status) __attribute__ ((__noreturn__));
# 1 "/usr/include/bits/confname.h" 1 3 4
# 26 "/usr/include/bits/confname.h" 3 4
enum
{
_PC_LINK_MAX,
_PC_MAX_CANON,
_PC_MAX_INPUT,
_PC_NAME_MAX,
_PC_PATH_MAX,
_PC_PIPE_BUF,
_PC_CHOWN_RESTRICTED,
_PC_NO_TRUNC,
_PC_VDISABLE,
_PC_SYNC_IO,
_PC_ASYNC_IO,
_PC_PRIO_IO,
_PC_SOCK_MAXBUF,
_PC_FILESIZEBITS,
_PC_REC_INCR_XFER_SIZE,
_PC_REC_MAX_XFER_SIZE,
_PC_REC_MIN_XFER_SIZE,
_PC_REC_XFER_ALIGN,
_PC_ALLOC_SIZE_MIN,
_PC_SYMLINK_MAX,
_PC_2_SYMLINKS
};
enum
{
_SC_ARG_MAX,
_SC_CHILD_MAX,
_SC_CLK_TCK,
_SC_NGROUPS_MAX,
_SC_OPEN_MAX,
_SC_STREAM_MAX,
_SC_TZNAME_MAX,
_SC_JOB_CONTROL,
_SC_SAVED_IDS,
_SC_REALTIME_SIGNALS,
_SC_PRIORITY_SCHEDULING,
_SC_TIMERS,
_SC_ASYNCHRONOUS_IO,
_SC_PRIORITIZED_IO,
_SC_SYNCHRONIZED_IO,
_SC_FSYNC,
_SC_MAPPED_FILES,
_SC_MEMLOCK,
_SC_MEMLOCK_RANGE,
_SC_MEMORY_PROTECTION,
_SC_MESSAGE_PASSING,
_SC_SEMAPHORES,
_SC_SHARED_MEMORY_OBJECTS,
_SC_AIO_LISTIO_MAX,
_SC_AIO_MAX,
_SC_AIO_PRIO_DELTA_MAX,
_SC_DELAYTIMER_MAX,
_SC_MQ_OPEN_MAX,
_SC_MQ_PRIO_MAX,
_SC_VERSION,
_SC_PAGESIZE,
_SC_RTSIG_MAX,
_SC_SEM_NSEMS_MAX,
_SC_SEM_VALUE_MAX,
_SC_SIGQUEUE_MAX,
_SC_TIMER_MAX,
_SC_BC_BASE_MAX,
_SC_BC_DIM_MAX,
_SC_BC_SCALE_MAX,
_SC_BC_STRING_MAX,
_SC_COLL_WEIGHTS_MAX,
_SC_EQUIV_CLASS_MAX,
_SC_EXPR_NEST_MAX,
_SC_LINE_MAX,
_SC_RE_DUP_MAX,
_SC_CHARCLASS_NAME_MAX,
_SC_2_VERSION,
_SC_2_C_BIND,
_SC_2_C_DEV,
_SC_2_FORT_DEV,
_SC_2_FORT_RUN,
_SC_2_SW_DEV,
_SC_2_LOCALEDEF,
_SC_PII,
_SC_PII_XTI,
_SC_PII_SOCKET,
_SC_PII_INTERNET,
_SC_PII_OSI,
_SC_POLL,
_SC_SELECT,
_SC_UIO_MAXIOV,
_SC_IOV_MAX = _SC_UIO_MAXIOV,
_SC_PII_INTERNET_STREAM,
_SC_PII_INTERNET_DGRAM,
_SC_PII_OSI_COTS,
_SC_PII_OSI_CLTS,
_SC_PII_OSI_M,
_SC_T_IOV_MAX,
_SC_THREADS,
_SC_THREAD_SAFE_FUNCTIONS,
_SC_GETGR_R_SIZE_MAX,
_SC_GETPW_R_SIZE_MAX,
_SC_LOGIN_NAME_MAX,
_SC_TTY_NAME_MAX,
_SC_THREAD_DESTRUCTOR_ITERATIONS,
_SC_THREAD_KEYS_MAX,
_SC_THREAD_STACK_MIN,
_SC_THREAD_THREADS_MAX,
_SC_THREAD_ATTR_STACKADDR,
_SC_THREAD_ATTR_STACKSIZE,
_SC_THREAD_PRIORITY_SCHEDULING,
_SC_THREAD_PRIO_INHERIT,
_SC_THREAD_PRIO_PROTECT,
_SC_THREAD_PROCESS_SHARED,
_SC_NPROCESSORS_CONF,
_SC_NPROCESSORS_ONLN,
_SC_PHYS_PAGES,
_SC_AVPHYS_PAGES,
_SC_ATEXIT_MAX,
_SC_PASS_MAX,
_SC_XOPEN_VERSION,
_SC_XOPEN_XCU_VERSION,
_SC_XOPEN_UNIX,
_SC_XOPEN_CRYPT,
_SC_XOPEN_ENH_I18N,
_SC_XOPEN_SHM,
_SC_2_CHAR_TERM,
_SC_2_C_VERSION,
_SC_2_UPE,
_SC_XOPEN_XPG2,
_SC_XOPEN_XPG3,
_SC_XOPEN_XPG4,
_SC_CHAR_BIT,
_SC_CHAR_MAX,
_SC_CHAR_MIN,
_SC_INT_MAX,
_SC_INT_MIN,
_SC_LONG_BIT,
_SC_WORD_BIT,
_SC_MB_LEN_MAX,
_SC_NZERO,
_SC_SSIZE_MAX,
_SC_SCHAR_MAX,
_SC_SCHAR_MIN,
_SC_SHRT_MAX,
_SC_SHRT_MIN,
_SC_UCHAR_MAX,
_SC_UINT_MAX,
_SC_ULONG_MAX,
_SC_USHRT_MAX,
_SC_NL_ARGMAX,
_SC_NL_LANGMAX,
_SC_NL_MSGMAX,
_SC_NL_NMAX,
_SC_NL_SETMAX,
_SC_NL_TEXTMAX,
_SC_XBS5_ILP32_OFF32,
_SC_XBS5_ILP32_OFFBIG,
_SC_XBS5_LP64_OFF64,
_SC_XBS5_LPBIG_OFFBIG,
_SC_XOPEN_LEGACY,
_SC_XOPEN_REALTIME,
_SC_XOPEN_REALTIME_THREADS,
_SC_ADVISORY_INFO,
_SC_BARRIERS,
_SC_BASE,
_SC_C_LANG_SUPPORT,
_SC_C_LANG_SUPPORT_R,
_SC_CLOCK_SELECTION,
_SC_CPUTIME,
_SC_THREAD_CPUTIME,
_SC_DEVICE_IO,
_SC_DEVICE_SPECIFIC,
_SC_DEVICE_SPECIFIC_R,
_SC_FD_MGMT,
_SC_FIFO,
_SC_PIPE,
_SC_FILE_ATTRIBUTES,
_SC_FILE_LOCKING,
_SC_FILE_SYSTEM,
_SC_MONOTONIC_CLOCK,
_SC_MULTI_PROCESS,
_SC_SINGLE_PROCESS,
_SC_NETWORKING,
_SC_READER_WRITER_LOCKS,
_SC_SPIN_LOCKS,
_SC_REGEXP,
_SC_REGEX_VERSION,
_SC_SHELL,
_SC_SIGNALS,
_SC_SPAWN,
_SC_SPORADIC_SERVER,
_SC_THREAD_SPORADIC_SERVER,
_SC_SYSTEM_DATABASE,
_SC_SYSTEM_DATABASE_R,
_SC_TIMEOUTS,
_SC_TYPED_MEMORY_OBJECTS,
_SC_USER_GROUPS,
_SC_USER_GROUPS_R,
_SC_2_PBS,
_SC_2_PBS_ACCOUNTING,
_SC_2_PBS_LOCATE,
_SC_2_PBS_MESSAGE,
_SC_2_PBS_TRACK,
_SC_SYMLOOP_MAX,
_SC_STREAMS,
_SC_2_PBS_CHECKPOINT,
_SC_V6_ILP32_OFF32,
_SC_V6_ILP32_OFFBIG,
_SC_V6_LP64_OFF64,
_SC_V6_LPBIG_OFFBIG,
_SC_HOST_NAME_MAX,
_SC_TRACE,
_SC_TRACE_EVENT_FILTER,
_SC_TRACE_INHERIT,
_SC_TRACE_LOG,
_SC_LEVEL1_ICACHE_SIZE,
_SC_LEVEL1_ICACHE_ASSOC,
_SC_LEVEL1_ICACHE_LINESIZE,
_SC_LEVEL1_DCACHE_SIZE,
_SC_LEVEL1_DCACHE_ASSOC,
_SC_LEVEL1_DCACHE_LINESIZE,
_SC_LEVEL2_CACHE_SIZE,
_SC_LEVEL2_CACHE_ASSOC,
_SC_LEVEL2_CACHE_LINESIZE,
_SC_LEVEL3_CACHE_SIZE,
_SC_LEVEL3_CACHE_ASSOC,
_SC_LEVEL3_CACHE_LINESIZE,
_SC_LEVEL4_CACHE_SIZE,
_SC_LEVEL4_CACHE_ASSOC,
_SC_LEVEL4_CACHE_LINESIZE,
_SC_IPV6 = _SC_LEVEL1_ICACHE_SIZE + 50,
_SC_RAW_SOCKETS
};
enum
{
_CS_PATH,
_CS_V6_WIDTH_RESTRICTED_ENVS,
_CS_GNU_LIBC_VERSION,
_CS_GNU_LIBPTHREAD_VERSION,
_CS_LFS_CFLAGS = 1000,
_CS_LFS_LDFLAGS,
_CS_LFS_LIBS,
_CS_LFS_LINTFLAGS,
_CS_LFS64_CFLAGS,
_CS_LFS64_LDFLAGS,
_CS_LFS64_LIBS,
_CS_LFS64_LINTFLAGS,
_CS_XBS5_ILP32_OFF32_CFLAGS = 1100,
_CS_XBS5_ILP32_OFF32_LDFLAGS,
_CS_XBS5_ILP32_OFF32_LIBS,
_CS_XBS5_ILP32_OFF32_LINTFLAGS,
_CS_XBS5_ILP32_OFFBIG_CFLAGS,
_CS_XBS5_ILP32_OFFBIG_LDFLAGS,
_CS_XBS5_ILP32_OFFBIG_LIBS,
_CS_XBS5_ILP32_OFFBIG_LINTFLAGS,
_CS_XBS5_LP64_OFF64_CFLAGS,
_CS_XBS5_LP64_OFF64_LDFLAGS,
_CS_XBS5_LP64_OFF64_LIBS,
_CS_XBS5_LP64_OFF64_LINTFLAGS,
_CS_XBS5_LPBIG_OFFBIG_CFLAGS,
_CS_XBS5_LPBIG_OFFBIG_LDFLAGS,
_CS_XBS5_LPBIG_OFFBIG_LIBS,
_CS_XBS5_LPBIG_OFFBIG_LINTFLAGS,
_CS_POSIX_V6_ILP32_OFF32_CFLAGS,
_CS_POSIX_V6_ILP32_OFF32_LDFLAGS,
_CS_POSIX_V6_ILP32_OFF32_LIBS,
_CS_POSIX_V6_ILP32_OFF32_LINTFLAGS,
_CS_POSIX_V6_ILP32_OFFBIG_CFLAGS,
_CS_POSIX_V6_ILP32_OFFBIG_LDFLAGS,
_CS_POSIX_V6_ILP32_OFFBIG_LIBS,
_CS_POSIX_V6_ILP32_OFFBIG_LINTFLAGS,
_CS_POSIX_V6_LP64_OFF64_CFLAGS,
_CS_POSIX_V6_LP64_OFF64_LDFLAGS,
_CS_POSIX_V6_LP64_OFF64_LIBS,
_CS_POSIX_V6_LP64_OFF64_LINTFLAGS,
_CS_POSIX_V6_LPBIG_OFFBIG_CFLAGS,
_CS_POSIX_V6_LPBIG_OFFBIG_LDFLAGS,
_CS_POSIX_V6_LPBIG_OFFBIG_LIBS,
_CS_POSIX_V6_LPBIG_OFFBIG_LINTFLAGS
};
# 555 "/usr/include/unistd.h" 2 3 4
extern long int pathconf (__const char *__path, int __name)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern long int fpathconf (int __fd, int __name) __attribute__ ((__nothrow__));
extern long int sysconf (int __name) __attribute__ ((__nothrow__));
extern size_t confstr (int __name, char *__buf, size_t __len) __attribute__ ((__nothrow__));
extern __pid_t getpid (void) __attribute__ ((__nothrow__));
extern __pid_t getppid (void) __attribute__ ((__nothrow__));
extern __pid_t getpgrp (void) __attribute__ ((__nothrow__));
# 591 "/usr/include/unistd.h" 3 4
extern __pid_t __getpgid (__pid_t __pid) __attribute__ ((__nothrow__));
# 600 "/usr/include/unistd.h" 3 4
extern int setpgid (__pid_t __pid, __pid_t __pgid) __attribute__ ((__nothrow__));
# 617 "/usr/include/unistd.h" 3 4
extern int setpgrp (void) __attribute__ ((__nothrow__));
# 634 "/usr/include/unistd.h" 3 4
extern __pid_t setsid (void) __attribute__ ((__nothrow__));
extern __uid_t getuid (void) __attribute__ ((__nothrow__));
extern __uid_t geteuid (void) __attribute__ ((__nothrow__));
extern __gid_t getgid (void) __attribute__ ((__nothrow__));
extern __gid_t getegid (void) __attribute__ ((__nothrow__));
extern int getgroups (int __size, __gid_t __list[]) __attribute__ ((__nothrow__)) ;
# 667 "/usr/include/unistd.h" 3 4
extern int setuid (__uid_t __uid) __attribute__ ((__nothrow__));
extern int setreuid (__uid_t __ruid, __uid_t __euid) __attribute__ ((__nothrow__));
extern int seteuid (__uid_t __uid) __attribute__ ((__nothrow__));
extern int setgid (__gid_t __gid) __attribute__ ((__nothrow__));
extern int setregid (__gid_t __rgid, __gid_t __egid) __attribute__ ((__nothrow__));
extern int setegid (__gid_t __gid) __attribute__ ((__nothrow__));
# 723 "/usr/include/unistd.h" 3 4
extern __pid_t fork (void) __attribute__ ((__nothrow__));
extern __pid_t vfork (void) __attribute__ ((__nothrow__));
extern char *ttyname (int __fd) __attribute__ ((__nothrow__));
extern int ttyname_r (int __fd, char *__buf, size_t __buflen)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))) ;
extern int isatty (int __fd) __attribute__ ((__nothrow__));
extern int ttyslot (void) __attribute__ ((__nothrow__));
extern int link (__const char *__from, __const char *__to)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))) ;
# 769 "/usr/include/unistd.h" 3 4
extern int symlink (__const char *__from, __const char *__to)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))) ;
extern ssize_t readlink (__const char *__restrict __path,
char *__restrict __buf, size_t __len)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))) ;
# 792 "/usr/include/unistd.h" 3 4
extern int unlink (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 801 "/usr/include/unistd.h" 3 4
extern int rmdir (__const char *__path) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern __pid_t tcgetpgrp (int __fd) __attribute__ ((__nothrow__));
extern int tcsetpgrp (int __fd, __pid_t __pgrp_id) __attribute__ ((__nothrow__));
extern char *getlogin (void);
extern int getlogin_r (char *__name, size_t __name_len) __attribute__ ((__nonnull__ (1)));
extern int setlogin (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 837 "/usr/include/unistd.h" 3 4
# 1 "/usr/include/getopt.h" 1 3 4
# 59 "/usr/include/getopt.h" 3 4
extern char *optarg;
# 73 "/usr/include/getopt.h" 3 4
extern int optind;
extern int opterr;
extern int optopt;
# 152 "/usr/include/getopt.h" 3 4
extern int getopt (int ___argc, char *const *___argv, const char *__shortopts)
__attribute__ ((__nothrow__));
# 838 "/usr/include/unistd.h" 2 3 4
extern int gethostname (char *__name, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int sethostname (__const char *__name, size_t __len)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern int sethostid (long int __id) __attribute__ ((__nothrow__)) ;
extern int getdomainname (char *__name, size_t __len)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern int setdomainname (__const char *__name, size_t __len)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern int vhangup (void) __attribute__ ((__nothrow__));
extern int revoke (__const char *__file) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern int profil (unsigned short int *__sample_buffer, size_t __size,
size_t __offset, unsigned int __scale)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int acct (__const char *__name) __attribute__ ((__nothrow__));
extern char *getusershell (void) __attribute__ ((__nothrow__));
extern void endusershell (void) __attribute__ ((__nothrow__));
extern void setusershell (void) __attribute__ ((__nothrow__));
extern int daemon (int __nochdir, int __noclose) __attribute__ ((__nothrow__)) ;
extern int chroot (__const char *__path) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern char *getpass (__const char *__prompt) __attribute__ ((__nonnull__ (1)));
# 923 "/usr/include/unistd.h" 3 4
extern int fsync (int __fd);
extern long int gethostid (void);
extern void sync (void) __attribute__ ((__nothrow__));
extern int getpagesize (void) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern int getdtablesize (void) __attribute__ ((__nothrow__));
extern int truncate (__const char *__file, __off_t __length)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
# 970 "/usr/include/unistd.h" 3 4
extern int ftruncate (int __fd, __off_t __length) __attribute__ ((__nothrow__)) ;
# 990 "/usr/include/unistd.h" 3 4
extern int brk (void *__addr) __attribute__ ((__nothrow__)) ;
extern void *sbrk (intptr_t __delta) __attribute__ ((__nothrow__));
# 1011 "/usr/include/unistd.h" 3 4
extern long int syscall (long int __sysno, ...) __attribute__ ((__nothrow__));
# 1034 "/usr/include/unistd.h" 3 4
extern int lockf (int __fd, int __cmd, __off_t __len) ;
# 1065 "/usr/include/unistd.h" 3 4
extern int fdatasync (int __fildes);
# 1103 "/usr/include/unistd.h" 3 4
# 28 "/usr/include/sys/user.h" 2 3 4
# 98 "/usr/include/sys/user.h" 3 4
struct user_fpregs_struct
{
long int cwd;
long int swd;
long int twd;
long int fip;
long int fcs;
long int foo;
long int fos;
long int st_space [20];
};
struct user_fpxregs_struct
{
unsigned short int cwd;
unsigned short int swd;
unsigned short int twd;
unsigned short int fop;
long int fip;
long int fcs;
long int foo;
long int fos;
long int mxcsr;
long int reserved;
long int st_space[32];
long int xmm_space[32];
long int padding[56];
};
struct user_regs_struct
{
long int ebx;
long int ecx;
long int edx;
long int esi;
long int edi;
long int ebp;
long int eax;
long int xds;
long int xes;
long int xfs;
long int xgs;
long int orig_eax;
long int eip;
long int xcs;
long int eflags;
long int esp;
long int xss;
};
struct user
{
struct user_regs_struct regs;
int u_fpvalid;
struct user_fpregs_struct i387;
unsigned long int u_tsize;
unsigned long int u_dsize;
unsigned long int u_ssize;
unsigned long start_code;
unsigned long start_stack;
long int signal;
int reserved;
struct user_regs_struct* u_ar0;
struct user_fpregs_struct* u_fpstate;
unsigned long int magic;
char u_comm [32];
int u_debugreg [8];
};
# 35 "/usr/include/sys/procfs.h" 2 3 4
typedef unsigned long elf_greg_t;
typedef elf_greg_t elf_gregset_t[(sizeof (struct user_regs_struct) / sizeof(elf_greg_t))];
typedef struct user_fpregs_struct elf_fpregset_t;
typedef struct user_fpxregs_struct elf_fpxregset_t;
# 64 "/usr/include/sys/procfs.h" 3 4
struct elf_siginfo
{
int si_signo;
int si_code;
int si_errno;
};
# 79 "/usr/include/sys/procfs.h" 3 4
struct elf_prstatus
{
struct elf_siginfo pr_info;
short int pr_cursig;
unsigned long int pr_sigpend;
unsigned long int pr_sighold;
__pid_t pr_pid;
__pid_t pr_ppid;
__pid_t pr_pgrp;
__pid_t pr_sid;
struct timeval pr_utime;
struct timeval pr_stime;
struct timeval pr_cutime;
struct timeval pr_cstime;
elf_gregset_t pr_reg;
int pr_fpvalid;
};
struct elf_prpsinfo
{
char pr_state;
char pr_sname;
char pr_zomb;
char pr_nice;
unsigned long int pr_flag;
unsigned short int pr_uid;
unsigned short int pr_gid;
int pr_pid, pr_ppid, pr_pgrp, pr_sid;
char pr_fname[16];
char pr_psargs[(80)];
};
typedef void *psaddr_t;
typedef elf_gregset_t prgregset_t;
typedef elf_fpregset_t prfpregset_t;
typedef __pid_t lwpid_t;
typedef struct elf_prstatus prstatus_t;
typedef struct elf_prpsinfo prpsinfo_t;
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_SYS_PROCFS_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/resource.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/sys/resource.h" 1 3 4
# 22 "/usr/include/sys/resource.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 23 "/usr/include/sys/resource.h" 2 3 4
# 1 "/usr/include/bits/resource.h" 1 3 4
# 25 "/usr/include/bits/resource.h" 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 26 "/usr/include/bits/resource.h" 2 3 4
enum __rlimit_resource
{
RLIMIT_CPU = 0,
RLIMIT_FSIZE = 1,
RLIMIT_DATA = 2,
RLIMIT_STACK = 3,
RLIMIT_CORE = 4,
__RLIMIT_RSS = 5,
RLIMIT_NOFILE = 7,
__RLIMIT_OFILE = RLIMIT_NOFILE,
RLIMIT_AS = 9,
__RLIMIT_NPROC = 6,
__RLIMIT_MEMLOCK = 8,
__RLIMIT_LOCKS = 10,
__RLIMIT_SIGPENDING = 11,
__RLIMIT_MSGQUEUE = 12,
__RLIMIT_NICE = 13,
__RLIMIT_RTPRIO = 14,
__RLIMIT_NLIMITS = 15,
__RLIM_NLIMITS = __RLIMIT_NLIMITS
};
# 127 "/usr/include/bits/resource.h" 3 4
typedef __rlim_t rlim_t;
struct rlimit
{
rlim_t rlim_cur;
rlim_t rlim_max;
};
# 154 "/usr/include/bits/resource.h" 3 4
enum __rusage_who
{
RUSAGE_SELF = 0,
RUSAGE_CHILDREN = -1
};
# 1 "/usr/include/bits/time.h" 1 3 4
# 69 "/usr/include/bits/time.h" 3 4
struct timeval
{
__time_t tv_sec;
__suseconds_t tv_usec;
};
# 167 "/usr/include/bits/resource.h" 2 3 4
struct rusage
{
struct timeval ru_utime;
struct timeval ru_stime;
long int ru_maxrss;
long int ru_ixrss;
long int ru_idrss;
long int ru_isrss;
long int ru_minflt;
long int ru_majflt;
long int ru_nswap;
long int ru_inblock;
long int ru_oublock;
long int ru_msgsnd;
long int ru_msgrcv;
long int ru_nsignals;
long int ru_nvcsw;
long int ru_nivcsw;
};
enum __priority_which
{
PRIO_PROCESS = 0,
PRIO_PGRP = 1,
PRIO_USER = 2
};
# 26 "/usr/include/sys/resource.h" 2 3 4
typedef __id_t id_t;
# 43 "/usr/include/sys/resource.h" 3 4
typedef int __rlimit_resource_t;
typedef int __rusage_who_t;
typedef int __priority_which_t;
extern int getrlimit (__rlimit_resource_t __resource,
struct rlimit *__rlimits) __attribute__ ((__nothrow__));
# 70 "/usr/include/sys/resource.h" 3 4
extern int setrlimit (__rlimit_resource_t __resource,
__const struct rlimit *__rlimits) __attribute__ ((__nothrow__));
# 88 "/usr/include/sys/resource.h" 3 4
extern int getrusage (__rusage_who_t __who, struct rusage *__usage) __attribute__ ((__nothrow__));
extern int getpriority (__priority_which_t __which, id_t __who) __attribute__ ((__nothrow__));
extern int setpriority (__priority_which_t __which, id_t __who, int __prio)
__attribute__ ((__nothrow__));
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_SYS_RESOURCE_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/systeminfo.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Possible ERROR while running preprocessor: /tmp/petsc-5zlcDX/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory
compilation terminated.
ret = 256
error message = {/tmp/petsc-5zlcDX/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory
compilation terminated.
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/systeminfo.h>
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/times.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/sys/times.h" 1 3 4
# 26 "/usr/include/sys/times.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 27 "/usr/include/sys/times.h" 2 3 4
# 1 "/usr/include/time.h" 1 3 4
# 57 "/usr/include/time.h" 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 58 "/usr/include/time.h" 2 3 4
typedef __clock_t clock_t;
# 30 "/usr/include/sys/times.h" 2 3 4
struct tms
{
clock_t tms_utime;
clock_t tms_stime;
clock_t tms_cutime;
clock_t tms_cstime;
};
extern clock_t times (struct tms *__buffer) __attribute__ ((__nothrow__));
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_SYS_TIMES_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/utsname.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/sys/utsname.h" 1 3 4
# 26 "/usr/include/sys/utsname.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 27 "/usr/include/sys/utsname.h" 2 3 4
# 1 "/usr/include/bits/utsname.h" 1 3 4
# 31 "/usr/include/sys/utsname.h" 2 3 4
# 49 "/usr/include/sys/utsname.h" 3 4
struct utsname
{
char sysname[65];
char nodename[65];
char release[65];
char version[65];
char machine[65];
char __domainname[65];
};
# 82 "/usr/include/sys/utsname.h" 3 4
extern int uname (struct utsname *__name) __attribute__ ((__nothrow__));
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_SYS_UTSNAME_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: string.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/string.h" 1 3 4
# 26 "/usr/include/string.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 27 "/usr/include/string.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 34 "/usr/include/string.h" 2 3 4
extern void *memcpy (void *__restrict __dest,
__const void *__restrict __src, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern void *memmove (void *__dest, __const void *__src, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern void *memccpy (void *__restrict __dest, __const void *__restrict __src,
int __c, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern void *memset (void *__s, int __c, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int memcmp (__const void *__s1, __const void *__s2, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern void *memchr (__const void *__s, int __c, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1)));
# 82 "/usr/include/string.h" 3 4
extern char *strcpy (char *__restrict __dest, __const char *__restrict __src)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *strncpy (char *__restrict __dest,
__const char *__restrict __src, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *strcat (char *__restrict __dest, __const char *__restrict __src)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *strncat (char *__restrict __dest, __const char *__restrict __src,
size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int strcmp (__const char *__s1, __const char *__s2)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern int strncmp (__const char *__s1, __const char *__s2, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern int strcoll (__const char *__s1, __const char *__s2)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern size_t strxfrm (char *__restrict __dest,
__const char *__restrict __src, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2)));
# 130 "/usr/include/string.h" 3 4
extern char *strdup (__const char *__s)
__attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1)));
# 165 "/usr/include/string.h" 3 4
extern char *strchr (__const char *__s, int __c)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1)));
extern char *strrchr (__const char *__s, int __c)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1)));
# 181 "/usr/include/string.h" 3 4
extern size_t strcspn (__const char *__s, __const char *__reject)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern size_t strspn (__const char *__s, __const char *__accept)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *strpbrk (__const char *__s, __const char *__accept)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *strstr (__const char *__haystack, __const char *__needle)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *strtok (char *__restrict __s, __const char *__restrict __delim)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2)));
extern char *__strtok_r (char *__restrict __s,
__const char *__restrict __delim,
char **__restrict __save_ptr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3)));
extern char *strtok_r (char *__restrict __s, __const char *__restrict __delim,
char **__restrict __save_ptr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3)));
# 240 "/usr/include/string.h" 3 4
extern size_t strlen (__const char *__s)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1)));
# 254 "/usr/include/string.h" 3 4
extern char *strerror (int __errnum) __attribute__ ((__nothrow__));
# 270 "/usr/include/string.h" 3 4
extern int strerror_r (int __errnum, char *__buf, size_t __buflen) __asm__ ("" "__xpg_strerror_r") __attribute__ ((__nothrow__))
__attribute__ ((__nonnull__ (2)));
# 294 "/usr/include/string.h" 3 4
extern void __bzero (void *__s, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern void bcopy (__const void *__src, void *__dest, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int bcmp (__const void *__s1, __const void *__s2, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *index (__const char *__s, int __c)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1)));
extern char *rindex (__const char *__s, int __c)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1)));
extern int ffs (int __i) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
# 331 "/usr/include/string.h" 3 4
extern int strcasecmp (__const char *__s1, __const char *__s2)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
# 354 "/usr/include/string.h" 3 4
extern char *strsep (char **__restrict __stringp,
__const char *__restrict __delim)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
# 432 "/usr/include/string.h" 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_STRING_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: stdlib.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/stdlib.h" 1 3 4
# 25 "/usr/include/stdlib.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 26 "/usr/include/stdlib.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 323 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef long int wchar_t;
# 34 "/usr/include/stdlib.h" 2 3 4
# 96 "/usr/include/stdlib.h" 3 4
typedef struct
{
int quot;
int rem;
} div_t;
typedef struct
{
long int quot;
long int rem;
} ldiv_t;
# 140 "/usr/include/stdlib.h" 3 4
extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__)) ;
extern double atof (__const char *__nptr)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ;
extern int atoi (__const char *__nptr)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ;
extern long int atol (__const char *__nptr)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ;
__extension__ extern long long int atoll (__const char *__nptr)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ;
extern double strtod (__const char *__restrict __nptr,
char **__restrict __endptr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
# 182 "/usr/include/stdlib.h" 3 4
extern long int strtol (__const char *__restrict __nptr,
char **__restrict __endptr, int __base)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern unsigned long int strtoul (__const char *__restrict __nptr,
char **__restrict __endptr, int __base)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
__extension__
extern long long int strtoq (__const char *__restrict __nptr,
char **__restrict __endptr, int __base)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
__extension__
extern unsigned long long int strtouq (__const char *__restrict __nptr,
char **__restrict __endptr, int __base)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
__extension__
extern long long int strtoll (__const char *__restrict __nptr,
char **__restrict __endptr, int __base)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
__extension__
extern unsigned long long int strtoull (__const char *__restrict __nptr,
char **__restrict __endptr, int __base)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
# 311 "/usr/include/stdlib.h" 3 4
extern char *l64a (long int __n) __attribute__ ((__nothrow__)) ;
extern long int a64l (__const char *__s)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ;
# 1 "/usr/include/sys/types.h" 1 3 4
# 29 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 32 "/usr/include/sys/types.h" 2 3 4
typedef __u_char u_char;
typedef __u_short u_short;
typedef __u_int u_int;
typedef __u_long u_long;
typedef __quad_t quad_t;
typedef __u_quad_t u_quad_t;
typedef __fsid_t fsid_t;
typedef __loff_t loff_t;
typedef __ino_t ino_t;
# 62 "/usr/include/sys/types.h" 3 4
typedef __dev_t dev_t;
typedef __gid_t gid_t;
typedef __mode_t mode_t;
typedef __nlink_t nlink_t;
typedef __uid_t uid_t;
typedef __off_t off_t;
# 100 "/usr/include/sys/types.h" 3 4
typedef __pid_t pid_t;
typedef __id_t id_t;
typedef __ssize_t ssize_t;
typedef __daddr_t daddr_t;
typedef __caddr_t caddr_t;
typedef __key_t key_t;
# 133 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/time.h" 1 3 4
# 75 "/usr/include/time.h" 3 4
typedef __time_t time_t;
# 93 "/usr/include/time.h" 3 4
typedef __clockid_t clockid_t;
# 105 "/usr/include/time.h" 3 4
typedef __timer_t timer_t;
# 134 "/usr/include/sys/types.h" 2 3 4
# 147 "/usr/include/sys/types.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 148 "/usr/include/sys/types.h" 2 3 4
typedef unsigned long int ulong;
typedef unsigned short int ushort;
typedef unsigned int uint;
# 195 "/usr/include/sys/types.h" 3 4
typedef int int8_t __attribute__ ((__mode__ (__QI__)));
typedef int int16_t __attribute__ ((__mode__ (__HI__)));
typedef int int32_t __attribute__ ((__mode__ (__SI__)));
typedef int int64_t __attribute__ ((__mode__ (__DI__)));
typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__)));
typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__)));
typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__)));
typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__)));
typedef int register_t __attribute__ ((__mode__ (__word__)));
# 217 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/endian.h" 1 3 4
# 37 "/usr/include/endian.h" 3 4
# 1 "/usr/include/bits/endian.h" 1 3 4
# 38 "/usr/include/endian.h" 2 3 4
# 218 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/select.h" 1 3 4
# 31 "/usr/include/sys/select.h" 3 4
# 1 "/usr/include/bits/select.h" 1 3 4
# 32 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/sigset.h" 1 3 4
# 24 "/usr/include/bits/sigset.h" 3 4
typedef int __sig_atomic_t;
typedef struct
{
unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))];
} __sigset_t;
# 35 "/usr/include/sys/select.h" 2 3 4
typedef __sigset_t sigset_t;
# 1 "/usr/include/time.h" 1 3 4
# 121 "/usr/include/time.h" 3 4
struct timespec
{
__time_t tv_sec;
long int tv_nsec;
};
# 45 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/time.h" 1 3 4
# 69 "/usr/include/bits/time.h" 3 4
struct timeval
{
__time_t tv_sec;
__suseconds_t tv_usec;
};
# 47 "/usr/include/sys/select.h" 2 3 4
typedef __suseconds_t suseconds_t;
typedef long int __fd_mask;
# 67 "/usr/include/sys/select.h" 3 4
typedef struct
{
__fd_mask __fds_bits[1024 / (8 * sizeof (__fd_mask))];
} fd_set;
typedef __fd_mask fd_mask;
# 99 "/usr/include/sys/select.h" 3 4
# 109 "/usr/include/sys/select.h" 3 4
extern int select (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
struct timeval *__restrict __timeout);
# 121 "/usr/include/sys/select.h" 3 4
extern int pselect (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
const struct timespec *__restrict __timeout,
const __sigset_t *__restrict __sigmask);
# 221 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/sysmacros.h" 1 3 4
# 30 "/usr/include/sys/sysmacros.h" 3 4
__extension__
extern unsigned int gnu_dev_major (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned int gnu_dev_minor (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned long long int gnu_dev_makedev (unsigned int __major,
unsigned int __minor)
__attribute__ ((__nothrow__));
# 224 "/usr/include/sys/types.h" 2 3 4
# 235 "/usr/include/sys/types.h" 3 4
typedef __blkcnt_t blkcnt_t;
typedef __fsblkcnt_t fsblkcnt_t;
typedef __fsfilcnt_t fsfilcnt_t;
# 270 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/pthreadtypes.h" 1 3 4
# 23 "/usr/include/bits/pthreadtypes.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 24 "/usr/include/bits/pthreadtypes.h" 2 3 4
# 50 "/usr/include/bits/pthreadtypes.h" 3 4
typedef unsigned long int pthread_t;
typedef union
{
char __size[36];
long int __align;
} pthread_attr_t;
# 67 "/usr/include/bits/pthreadtypes.h" 3 4
typedef struct __pthread_internal_slist
{
struct __pthread_internal_slist *__next;
} __pthread_slist_t;
typedef union
{
struct __pthread_mutex_s
{
int __lock;
unsigned int __count;
int __owner;
int __kind;
unsigned int __nusers;
__extension__ union
{
int __spins;
__pthread_slist_t __list;
};
} __data;
char __size[24];
long int __align;
} pthread_mutex_t;
typedef union
{
char __size[4];
int __align;
} pthread_mutexattr_t;
typedef union
{
struct
{
int __lock;
unsigned int __futex;
__extension__ unsigned long long int __total_seq;
__extension__ unsigned long long int __wakeup_seq;
__extension__ unsigned long long int __woken_seq;
void *__mutex;
unsigned int __nwaiters;
unsigned int __broadcast_seq;
} __data;
char __size[48];
__extension__ long long int __align;
} pthread_cond_t;
typedef union
{
char __size[4];
int __align;
} pthread_condattr_t;
typedef unsigned int pthread_key_t;
typedef int pthread_once_t;
typedef union
{
# 170 "/usr/include/bits/pthreadtypes.h" 3 4
struct
{
int __lock;
unsigned int __nr_readers;
unsigned int __readers_wakeup;
unsigned int __writer_wakeup;
unsigned int __nr_readers_queued;
unsigned int __nr_writers_queued;
unsigned char __flags;
unsigned char __shared;
unsigned char __pad1;
unsigned char __pad2;
int __writer;
} __data;
char __size[32];
long int __align;
} pthread_rwlock_t;
typedef union
{
char __size[8];
long int __align;
} pthread_rwlockattr_t;
typedef volatile int pthread_spinlock_t;
typedef union
{
char __size[20];
long int __align;
} pthread_barrier_t;
typedef union
{
char __size[4];
int __align;
} pthread_barrierattr_t;
# 271 "/usr/include/sys/types.h" 2 3 4
# 321 "/usr/include/stdlib.h" 2 3 4
extern long int random (void) __attribute__ ((__nothrow__));
extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__));
extern char *initstate (unsigned int __seed, char *__statebuf,
size_t __statelen) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2)));
extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
struct random_data
{
int32_t *fptr;
int32_t *rptr;
int32_t *state;
int rand_type;
int rand_deg;
int rand_sep;
int32_t *end_ptr;
};
extern int random_r (struct random_data *__restrict __buf,
int32_t *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int srandom_r (unsigned int __seed, struct random_data *__buf)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2)));
extern int initstate_r (unsigned int __seed, char *__restrict __statebuf,
size_t __statelen,
struct random_data *__restrict __buf)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 4)));
extern int setstate_r (char *__restrict __statebuf,
struct random_data *__restrict __buf)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int rand (void) __attribute__ ((__nothrow__));
extern void srand (unsigned int __seed) __attribute__ ((__nothrow__));
extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__));
extern double drand48 (void) __attribute__ ((__nothrow__));
extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern long int lrand48 (void) __attribute__ ((__nothrow__));
extern long int nrand48 (unsigned short int __xsubi[3])
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern long int mrand48 (void) __attribute__ ((__nothrow__));
extern long int jrand48 (unsigned short int __xsubi[3])
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern void srand48 (long int __seedval) __attribute__ ((__nothrow__));
extern unsigned short int *seed48 (unsigned short int __seed16v[3])
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
struct drand48_data
{
unsigned short int __x[3];
unsigned short int __old_x[3];
unsigned short int __c;
unsigned short int __init;
unsigned long long int __a;
};
extern int drand48_r (struct drand48_data *__restrict __buffer,
double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int erand48_r (unsigned short int __xsubi[3],
struct drand48_data *__restrict __buffer,
double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int lrand48_r (struct drand48_data *__restrict __buffer,
long int *__restrict __result)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int nrand48_r (unsigned short int __xsubi[3],
struct drand48_data *__restrict __buffer,
long int *__restrict __result)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int mrand48_r (struct drand48_data *__restrict __buffer,
long int *__restrict __result)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int jrand48_r (unsigned short int __xsubi[3],
struct drand48_data *__restrict __buffer,
long int *__restrict __result)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int srand48_r (long int __seedval, struct drand48_data *__buffer)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2)));
extern int seed48_r (unsigned short int __seed16v[3],
struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int lcong48_r (unsigned short int __param[7],
struct drand48_data *__buffer)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern void *malloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ;
extern void *calloc (size_t __nmemb, size_t __size)
__attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ;
extern void *realloc (void *__ptr, size_t __size)
__attribute__ ((__nothrow__)) __attribute__ ((__warn_unused_result__));
extern void free (void *__ptr) __attribute__ ((__nothrow__));
extern void cfree (void *__ptr) __attribute__ ((__nothrow__));
# 1 "/usr/include/alloca.h" 1 3 4
# 25 "/usr/include/alloca.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 26 "/usr/include/alloca.h" 2 3 4
extern void *alloca (size_t __size) __attribute__ ((__nothrow__));
# 498 "/usr/include/stdlib.h" 2 3 4
extern void *valloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ;
extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern void abort (void) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__));
extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern void exit (int __status) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__));
# 543 "/usr/include/stdlib.h" 3 4
extern char *getenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern char *__secure_getenv (__const char *__name)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
extern int putenv (char *__string) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int setenv (__const char *__name, __const char *__value, int __replace)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2)));
extern int unsetenv (__const char *__name) __attribute__ ((__nothrow__));
extern int clearenv (void) __attribute__ ((__nothrow__));
# 583 "/usr/include/stdlib.h" 3 4
extern char *mktemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
# 594 "/usr/include/stdlib.h" 3 4
extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ;
# 614 "/usr/include/stdlib.h" 3 4
extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
# 640 "/usr/include/stdlib.h" 3 4
extern int system (__const char *__command) ;
# 662 "/usr/include/stdlib.h" 3 4
extern char *realpath (__const char *__restrict __name,
char *__restrict __resolved) __attribute__ ((__nothrow__)) ;
typedef int (*__compar_fn_t) (__const void *, __const void *);
extern void *bsearch (__const void *__key, __const void *__base,
size_t __nmemb, size_t __size, __compar_fn_t __compar)
__attribute__ ((__nonnull__ (1, 2, 5))) ;
extern void qsort (void *__base, size_t __nmemb, size_t __size,
__compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4)));
extern int abs (int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ;
extern long int labs (long int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ;
extern div_t div (int __numer, int __denom)
__attribute__ ((__nothrow__)) __attribute__ ((__const__)) ;
extern ldiv_t ldiv (long int __numer, long int __denom)
__attribute__ ((__nothrow__)) __attribute__ ((__const__)) ;
# 727 "/usr/include/stdlib.h" 3 4
extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt,
int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ;
extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt,
int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ;
extern char *gcvt (double __value, int __ndigit, char *__buf)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ;
extern char *qecvt (long double __value, int __ndigit,
int *__restrict __decpt, int *__restrict __sign)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ;
extern char *qfcvt (long double __value, int __ndigit,
int *__restrict __decpt, int *__restrict __sign)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ;
extern char *qgcvt (long double __value, int __ndigit, char *__buf)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ;
extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt,
int *__restrict __sign, char *__restrict __buf,
size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5)));
extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt,
int *__restrict __sign, char *__restrict __buf,
size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5)));
extern int qecvt_r (long double __value, int __ndigit,
int *__restrict __decpt, int *__restrict __sign,
char *__restrict __buf, size_t __len)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5)));
extern int qfcvt_r (long double __value, int __ndigit,
int *__restrict __decpt, int *__restrict __sign,
char *__restrict __buf, size_t __len)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5)));
extern int mblen (__const char *__s, size_t __n) __attribute__ ((__nothrow__)) ;
extern int mbtowc (wchar_t *__restrict __pwc,
__const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)) ;
extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__)) ;
extern size_t mbstowcs (wchar_t *__restrict __pwcs,
__const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__));
extern size_t wcstombs (char *__restrict __s,
__const wchar_t *__restrict __pwcs, size_t __n)
__attribute__ ((__nothrow__));
extern int rpmatch (__const char *__response) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ;
# 832 "/usr/include/stdlib.h" 3 4
extern int posix_openpt (int __oflag) ;
# 867 "/usr/include/stdlib.h" 3 4
extern int getloadavg (double __loadavg[], int __nelem)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 883 "/usr/include/stdlib.h" 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_STDLIB_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: memory.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/memory.h" 1 3 4
# 26 "/usr/include/memory.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 27 "/usr/include/memory.h" 2 3 4
# 1 "/usr/include/string.h" 1 3 4
# 28 "/usr/include/string.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 34 "/usr/include/string.h" 2 3 4
extern void *memcpy (void *__restrict __dest,
__const void *__restrict __src, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern void *memmove (void *__dest, __const void *__src, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern void *memccpy (void *__restrict __dest, __const void *__restrict __src,
int __c, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern void *memset (void *__s, int __c, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int memcmp (__const void *__s1, __const void *__s2, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern void *memchr (__const void *__s, int __c, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1)));
# 82 "/usr/include/string.h" 3 4
extern char *strcpy (char *__restrict __dest, __const char *__restrict __src)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *strncpy (char *__restrict __dest,
__const char *__restrict __src, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *strcat (char *__restrict __dest, __const char *__restrict __src)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *strncat (char *__restrict __dest, __const char *__restrict __src,
size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int strcmp (__const char *__s1, __const char *__s2)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern int strncmp (__const char *__s1, __const char *__s2, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern int strcoll (__const char *__s1, __const char *__s2)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern size_t strxfrm (char *__restrict __dest,
__const char *__restrict __src, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2)));
# 130 "/usr/include/string.h" 3 4
extern char *strdup (__const char *__s)
__attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1)));
# 165 "/usr/include/string.h" 3 4
extern char *strchr (__const char *__s, int __c)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1)));
extern char *strrchr (__const char *__s, int __c)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1)));
# 181 "/usr/include/string.h" 3 4
extern size_t strcspn (__const char *__s, __const char *__reject)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern size_t strspn (__const char *__s, __const char *__accept)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *strpbrk (__const char *__s, __const char *__accept)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *strstr (__const char *__haystack, __const char *__needle)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *strtok (char *__restrict __s, __const char *__restrict __delim)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2)));
extern char *__strtok_r (char *__restrict __s,
__const char *__restrict __delim,
char **__restrict __save_ptr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3)));
extern char *strtok_r (char *__restrict __s, __const char *__restrict __delim,
char **__restrict __save_ptr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3)));
# 240 "/usr/include/string.h" 3 4
extern size_t strlen (__const char *__s)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1)));
# 254 "/usr/include/string.h" 3 4
extern char *strerror (int __errnum) __attribute__ ((__nothrow__));
# 270 "/usr/include/string.h" 3 4
extern int strerror_r (int __errnum, char *__buf, size_t __buflen) __asm__ ("" "__xpg_strerror_r") __attribute__ ((__nothrow__))
__attribute__ ((__nonnull__ (2)));
# 294 "/usr/include/string.h" 3 4
extern void __bzero (void *__s, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern void bcopy (__const void *__src, void *__dest, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int bcmp (__const void *__s1, __const void *__s2, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern char *index (__const char *__s, int __c)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1)));
extern char *rindex (__const char *__s, int __c)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1)));
extern int ffs (int __i) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
# 331 "/usr/include/string.h" 3 4
extern int strcasecmp (__const char *__s1, __const char *__s2)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n)
__attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2)));
# 354 "/usr/include/string.h" 3 4
extern char *strsep (char **__restrict __stringp,
__const char *__restrict __delim)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
# 432 "/usr/include/string.h" 3 4
# 31 "/usr/include/memory.h" 2 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_MEMORY_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/socket.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/sys/socket.h" 1 3 4
# 24 "/usr/include/sys/socket.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 25 "/usr/include/sys/socket.h" 2 3 4
# 1 "/usr/include/sys/uio.h" 1 3 4
# 24 "/usr/include/sys/uio.h" 3 4
# 1 "/usr/include/sys/types.h" 1 3 4
# 29 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 32 "/usr/include/sys/types.h" 2 3 4
typedef __u_char u_char;
typedef __u_short u_short;
typedef __u_int u_int;
typedef __u_long u_long;
typedef __quad_t quad_t;
typedef __u_quad_t u_quad_t;
typedef __fsid_t fsid_t;
typedef __loff_t loff_t;
typedef __ino_t ino_t;
# 62 "/usr/include/sys/types.h" 3 4
typedef __dev_t dev_t;
typedef __gid_t gid_t;
typedef __mode_t mode_t;
typedef __nlink_t nlink_t;
typedef __uid_t uid_t;
typedef __off_t off_t;
# 100 "/usr/include/sys/types.h" 3 4
typedef __pid_t pid_t;
typedef __id_t id_t;
typedef __ssize_t ssize_t;
typedef __daddr_t daddr_t;
typedef __caddr_t caddr_t;
typedef __key_t key_t;
# 133 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/time.h" 1 3 4
# 75 "/usr/include/time.h" 3 4
typedef __time_t time_t;
# 93 "/usr/include/time.h" 3 4
typedef __clockid_t clockid_t;
# 105 "/usr/include/time.h" 3 4
typedef __timer_t timer_t;
# 134 "/usr/include/sys/types.h" 2 3 4
# 147 "/usr/include/sys/types.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 148 "/usr/include/sys/types.h" 2 3 4
typedef unsigned long int ulong;
typedef unsigned short int ushort;
typedef unsigned int uint;
# 195 "/usr/include/sys/types.h" 3 4
typedef int int8_t __attribute__ ((__mode__ (__QI__)));
typedef int int16_t __attribute__ ((__mode__ (__HI__)));
typedef int int32_t __attribute__ ((__mode__ (__SI__)));
typedef int int64_t __attribute__ ((__mode__ (__DI__)));
typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__)));
typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__)));
typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__)));
typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__)));
typedef int register_t __attribute__ ((__mode__ (__word__)));
# 217 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/endian.h" 1 3 4
# 37 "/usr/include/endian.h" 3 4
# 1 "/usr/include/bits/endian.h" 1 3 4
# 38 "/usr/include/endian.h" 2 3 4
# 218 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/select.h" 1 3 4
# 31 "/usr/include/sys/select.h" 3 4
# 1 "/usr/include/bits/select.h" 1 3 4
# 32 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/sigset.h" 1 3 4
# 24 "/usr/include/bits/sigset.h" 3 4
typedef int __sig_atomic_t;
typedef struct
{
unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))];
} __sigset_t;
# 35 "/usr/include/sys/select.h" 2 3 4
typedef __sigset_t sigset_t;
# 1 "/usr/include/time.h" 1 3 4
# 121 "/usr/include/time.h" 3 4
struct timespec
{
__time_t tv_sec;
long int tv_nsec;
};
# 45 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/time.h" 1 3 4
# 69 "/usr/include/bits/time.h" 3 4
struct timeval
{
__time_t tv_sec;
__suseconds_t tv_usec;
};
# 47 "/usr/include/sys/select.h" 2 3 4
typedef __suseconds_t suseconds_t;
typedef long int __fd_mask;
# 67 "/usr/include/sys/select.h" 3 4
typedef struct
{
__fd_mask __fds_bits[1024 / (8 * sizeof (__fd_mask))];
} fd_set;
typedef __fd_mask fd_mask;
# 99 "/usr/include/sys/select.h" 3 4
# 109 "/usr/include/sys/select.h" 3 4
extern int select (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
struct timeval *__restrict __timeout);
# 121 "/usr/include/sys/select.h" 3 4
extern int pselect (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
const struct timespec *__restrict __timeout,
const __sigset_t *__restrict __sigmask);
# 221 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/sysmacros.h" 1 3 4
# 30 "/usr/include/sys/sysmacros.h" 3 4
__extension__
extern unsigned int gnu_dev_major (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned int gnu_dev_minor (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned long long int gnu_dev_makedev (unsigned int __major,
unsigned int __minor)
__attribute__ ((__nothrow__));
# 224 "/usr/include/sys/types.h" 2 3 4
# 235 "/usr/include/sys/types.h" 3 4
typedef __blkcnt_t blkcnt_t;
typedef __fsblkcnt_t fsblkcnt_t;
typedef __fsfilcnt_t fsfilcnt_t;
# 270 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/pthreadtypes.h" 1 3 4
# 23 "/usr/include/bits/pthreadtypes.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 24 "/usr/include/bits/pthreadtypes.h" 2 3 4
# 50 "/usr/include/bits/pthreadtypes.h" 3 4
typedef unsigned long int pthread_t;
typedef union
{
char __size[36];
long int __align;
} pthread_attr_t;
# 67 "/usr/include/bits/pthreadtypes.h" 3 4
typedef struct __pthread_internal_slist
{
struct __pthread_internal_slist *__next;
} __pthread_slist_t;
typedef union
{
struct __pthread_mutex_s
{
int __lock;
unsigned int __count;
int __owner;
int __kind;
unsigned int __nusers;
__extension__ union
{
int __spins;
__pthread_slist_t __list;
};
} __data;
char __size[24];
long int __align;
} pthread_mutex_t;
typedef union
{
char __size[4];
int __align;
} pthread_mutexattr_t;
typedef union
{
struct
{
int __lock;
unsigned int __futex;
__extension__ unsigned long long int __total_seq;
__extension__ unsigned long long int __wakeup_seq;
__extension__ unsigned long long int __woken_seq;
void *__mutex;
unsigned int __nwaiters;
unsigned int __broadcast_seq;
} __data;
char __size[48];
__extension__ long long int __align;
} pthread_cond_t;
typedef union
{
char __size[4];
int __align;
} pthread_condattr_t;
typedef unsigned int pthread_key_t;
typedef int pthread_once_t;
typedef union
{
# 170 "/usr/include/bits/pthreadtypes.h" 3 4
struct
{
int __lock;
unsigned int __nr_readers;
unsigned int __readers_wakeup;
unsigned int __writer_wakeup;
unsigned int __nr_readers_queued;
unsigned int __nr_writers_queued;
unsigned char __flags;
unsigned char __shared;
unsigned char __pad1;
unsigned char __pad2;
int __writer;
} __data;
char __size[32];
long int __align;
} pthread_rwlock_t;
typedef union
{
char __size[8];
long int __align;
} pthread_rwlockattr_t;
typedef volatile int pthread_spinlock_t;
typedef union
{
char __size[20];
long int __align;
} pthread_barrier_t;
typedef union
{
char __size[4];
int __align;
} pthread_barrierattr_t;
# 271 "/usr/include/sys/types.h" 2 3 4
# 25 "/usr/include/sys/uio.h" 2 3 4
# 1 "/usr/include/bits/uio.h" 1 3 4
# 44 "/usr/include/bits/uio.h" 3 4
struct iovec
{
void *iov_base;
size_t iov_len;
};
# 30 "/usr/include/sys/uio.h" 2 3 4
# 40 "/usr/include/sys/uio.h" 3 4
extern ssize_t readv (int __fd, __const struct iovec *__iovec, int __count);
# 50 "/usr/include/sys/uio.h" 3 4
extern ssize_t writev (int __fd, __const struct iovec *__iovec, int __count);
# 29 "/usr/include/sys/socket.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 31 "/usr/include/sys/socket.h" 2 3 4
# 1 "/usr/include/bits/socket.h" 1 3 4
# 30 "/usr/include/bits/socket.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 31 "/usr/include/bits/socket.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 1 3 4
# 34 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/syslimits.h" 1 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 1 3 4
# 169 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 3 4
# 1 "/usr/include/limits.h" 1 3 4
# 145 "/usr/include/limits.h" 3 4
# 1 "/usr/include/bits/posix1_lim.h" 1 3 4
# 153 "/usr/include/bits/posix1_lim.h" 3 4
# 1 "/usr/include/bits/local_lim.h" 1 3 4
# 36 "/usr/include/bits/local_lim.h" 3 4
# 1 "/usr/include/linux/limits.h" 1 3 4
# 37 "/usr/include/bits/local_lim.h" 2 3 4
# 154 "/usr/include/bits/posix1_lim.h" 2 3 4
# 146 "/usr/include/limits.h" 2 3 4
# 1 "/usr/include/bits/posix2_lim.h" 1 3 4
# 150 "/usr/include/limits.h" 2 3 4
# 170 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 2 3 4
# 8 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/syslimits.h" 2 3 4
# 35 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 2 3 4
# 33 "/usr/include/bits/socket.h" 2 3 4
typedef __socklen_t socklen_t;
enum __socket_type
{
SOCK_STREAM = 1,
SOCK_DGRAM = 2,
SOCK_RAW = 3,
SOCK_RDM = 4,
SOCK_SEQPACKET = 5,
SOCK_PACKET = 10
};
# 147 "/usr/include/bits/socket.h" 3 4
# 1 "/usr/include/bits/sockaddr.h" 1 3 4
# 29 "/usr/include/bits/sockaddr.h" 3 4
typedef unsigned short int sa_family_t;
# 148 "/usr/include/bits/socket.h" 2 3 4
struct sockaddr
{
sa_family_t sa_family;
char sa_data[14];
};
# 167 "/usr/include/bits/socket.h" 3 4
struct sockaddr_storage
{
sa_family_t ss_family;
__uint32_t __ss_align;
char __ss_padding[(128 - (2 * sizeof (__uint32_t)))];
};
enum
{
MSG_OOB = 0x01,
MSG_PEEK = 0x02,
MSG_DONTROUTE = 0x04,
MSG_CTRUNC = 0x08,
MSG_PROXY = 0x10,
MSG_TRUNC = 0x20,
MSG_DONTWAIT = 0x40,
MSG_EOR = 0x80,
MSG_WAITALL = 0x100,
MSG_FIN = 0x200,
MSG_SYN = 0x400,
MSG_CONFIRM = 0x800,
MSG_RST = 0x1000,
MSG_ERRQUEUE = 0x2000,
MSG_NOSIGNAL = 0x4000,
MSG_MORE = 0x8000,
MSG_CMSG_CLOEXEC = 0x40000000
};
struct msghdr
{
void *msg_name;
socklen_t msg_namelen;
struct iovec *msg_iov;
size_t msg_iovlen;
void *msg_control;
size_t msg_controllen;
int msg_flags;
};
struct cmsghdr
{
size_t cmsg_len;
int cmsg_level;
int cmsg_type;
__extension__ unsigned char __cmsg_data [];
};
# 273 "/usr/include/bits/socket.h" 3 4
extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr,
struct cmsghdr *__cmsg) __attribute__ ((__nothrow__));
# 300 "/usr/include/bits/socket.h" 3 4
enum
{
SCM_RIGHTS = 0x01
, SCM_CREDENTIALS = 0x02
};
struct ucred
{
pid_t pid;
uid_t uid;
gid_t gid;
};
# 1 "/usr/include/asm/socket.h" 1 3 4
# 1 "/usr/include/asm/sockios.h" 1 3 4
# 5 "/usr/include/asm/socket.h" 2 3 4
# 321 "/usr/include/bits/socket.h" 2 3 4
struct linger
{
int l_onoff;
int l_linger;
};
# 37 "/usr/include/sys/socket.h" 2 3 4
struct osockaddr
{
unsigned short int sa_family;
unsigned char sa_data[14];
};
enum
{
SHUT_RD = 0,
SHUT_WR,
SHUT_RDWR
};
# 101 "/usr/include/sys/socket.h" 3 4
extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__));
extern int socketpair (int __domain, int __type, int __protocol,
int __fds[2]) __attribute__ ((__nothrow__));
extern int bind (int __fd, __const struct sockaddr * __addr, socklen_t __len)
__attribute__ ((__nothrow__));
extern int getsockname (int __fd, struct sockaddr *__restrict __addr,
socklen_t *__restrict __len) __attribute__ ((__nothrow__));
# 125 "/usr/include/sys/socket.h" 3 4
extern int connect (int __fd, __const struct sockaddr * __addr, socklen_t __len);
extern int getpeername (int __fd, struct sockaddr *__restrict __addr,
socklen_t *__restrict __len) __attribute__ ((__nothrow__));
extern ssize_t send (int __fd, __const void *__buf, size_t __n, int __flags);
extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags);
extern ssize_t sendto (int __fd, __const void *__buf, size_t __n,
int __flags, __const struct sockaddr * __addr,
socklen_t __addr_len);
# 162 "/usr/include/sys/socket.h" 3 4
extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n,
int __flags, struct sockaddr *__restrict __addr,
socklen_t *__restrict __addr_len);
extern ssize_t sendmsg (int __fd, __const struct msghdr *__message,
int __flags);
extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags);
extern int getsockopt (int __fd, int __level, int __optname,
void *__restrict __optval,
socklen_t *__restrict __optlen) __attribute__ ((__nothrow__));
extern int setsockopt (int __fd, int __level, int __optname,
__const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__));
extern int listen (int __fd, int __n) __attribute__ ((__nothrow__));
# 210 "/usr/include/sys/socket.h" 3 4
extern int accept (int __fd, struct sockaddr *__restrict __addr,
socklen_t *__restrict __addr_len);
extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__));
extern int sockatmark (int __fd) __attribute__ ((__nothrow__));
extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__));
# 241 "/usr/include/sys/socket.h" 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_SYS_SOCKET_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/wait.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/sys/wait.h" 1 3 4
# 27 "/usr/include/sys/wait.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 28 "/usr/include/sys/wait.h" 2 3 4
# 1 "/usr/include/signal.h" 1 3 4
# 31 "/usr/include/signal.h" 3 4
# 1 "/usr/include/bits/sigset.h" 1 3 4
# 24 "/usr/include/bits/sigset.h" 3 4
typedef int __sig_atomic_t;
typedef struct
{
unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))];
} __sigset_t;
# 104 "/usr/include/bits/sigset.h" 3 4
extern int __sigismember (__const __sigset_t *, int);
extern int __sigaddset (__sigset_t *, int);
extern int __sigdelset (__sigset_t *, int);
# 34 "/usr/include/signal.h" 2 3 4
typedef __sig_atomic_t sig_atomic_t;
typedef __sigset_t sigset_t;
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 58 "/usr/include/signal.h" 2 3 4
# 1 "/usr/include/bits/signum.h" 1 3 4
# 59 "/usr/include/signal.h" 2 3 4
typedef __pid_t pid_t;
typedef __uid_t uid_t;
typedef void (*__sighandler_t) (int);
extern __sighandler_t __sysv_signal (int __sig, __sighandler_t __handler)
__attribute__ ((__nothrow__));
# 90 "/usr/include/signal.h" 3 4
extern __sighandler_t signal (int __sig, __sighandler_t __handler)
__attribute__ ((__nothrow__));
# 104 "/usr/include/signal.h" 3 4
# 117 "/usr/include/signal.h" 3 4
extern int kill (__pid_t __pid, int __sig) __attribute__ ((__nothrow__));
extern int killpg (__pid_t __pgrp, int __sig) __attribute__ ((__nothrow__));
extern int raise (int __sig) __attribute__ ((__nothrow__));
extern __sighandler_t ssignal (int __sig, __sighandler_t __handler)
__attribute__ ((__nothrow__));
extern int gsignal (int __sig) __attribute__ ((__nothrow__));
extern void psignal (int __sig, __const char *__s);
# 153 "/usr/include/signal.h" 3 4
extern int __sigpause (int __sig_or_mask, int __is_sig);
# 181 "/usr/include/signal.h" 3 4
extern int sigblock (int __mask) __attribute__ ((__nothrow__)) __attribute__ ((__deprecated__));
extern int sigsetmask (int __mask) __attribute__ ((__nothrow__)) __attribute__ ((__deprecated__));
extern int siggetmask (void) __attribute__ ((__nothrow__)) __attribute__ ((__deprecated__));
# 201 "/usr/include/signal.h" 3 4
typedef __sighandler_t sig_t;
# 1 "/usr/include/time.h" 1 3 4
# 121 "/usr/include/time.h" 3 4
struct timespec
{
__time_t tv_sec;
long int tv_nsec;
};
# 210 "/usr/include/signal.h" 2 3 4
# 1 "/usr/include/bits/siginfo.h" 1 3 4
# 25 "/usr/include/bits/siginfo.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 26 "/usr/include/bits/siginfo.h" 2 3 4
typedef union sigval
{
int sival_int;
void *sival_ptr;
} sigval_t;
# 51 "/usr/include/bits/siginfo.h" 3 4
typedef struct siginfo
{
int si_signo;
int si_errno;
int si_code;
union
{
int _pad[((128 / sizeof (int)) - 3)];
struct
{
__pid_t si_pid;
__uid_t si_uid;
} _kill;
struct
{
int si_tid;
int si_overrun;
sigval_t si_sigval;
} _timer;
struct
{
__pid_t si_pid;
__uid_t si_uid;
sigval_t si_sigval;
} _rt;
struct
{
__pid_t si_pid;
__uid_t si_uid;
int si_status;
__clock_t si_utime;
__clock_t si_stime;
} _sigchld;
struct
{
void *si_addr;
} _sigfault;
struct
{
long int si_band;
int si_fd;
} _sigpoll;
} _sifields;
} siginfo_t;
# 129 "/usr/include/bits/siginfo.h" 3 4
enum
{
SI_ASYNCNL = -60,
SI_TKILL = -6,
SI_SIGIO,
SI_ASYNCIO,
SI_MESGQ,
SI_TIMER,
SI_QUEUE,
SI_USER,
SI_KERNEL = 0x80
};
enum
{
ILL_ILLOPC = 1,
ILL_ILLOPN,
ILL_ILLADR,
ILL_ILLTRP,
ILL_PRVOPC,
ILL_PRVREG,
ILL_COPROC,
ILL_BADSTK
};
enum
{
FPE_INTDIV = 1,
FPE_INTOVF,
FPE_FLTDIV,
FPE_FLTOVF,
FPE_FLTUND,
FPE_FLTRES,
FPE_FLTINV,
FPE_FLTSUB
};
enum
{
SEGV_MAPERR = 1,
SEGV_ACCERR
};
enum
{
BUS_ADRALN = 1,
BUS_ADRERR,
BUS_OBJERR
};
enum
{
TRAP_BRKPT = 1,
TRAP_TRACE
};
enum
{
CLD_EXITED = 1,
CLD_KILLED,
CLD_DUMPED,
CLD_TRAPPED,
CLD_STOPPED,
CLD_CONTINUED
};
enum
{
POLL_IN = 1,
POLL_OUT,
POLL_MSG,
POLL_ERR,
POLL_PRI,
POLL_HUP
};
# 273 "/usr/include/bits/siginfo.h" 3 4
typedef struct sigevent
{
sigval_t sigev_value;
int sigev_signo;
int sigev_notify;
union
{
int _pad[((64 / sizeof (int)) - 3)];
__pid_t _tid;
struct
{
void (*_function) (sigval_t);
void *_attribute;
} _sigev_thread;
} _sigev_un;
} sigevent_t;
enum
{
SIGEV_SIGNAL = 0,
SIGEV_NONE,
SIGEV_THREAD,
SIGEV_THREAD_ID = 4
};
# 213 "/usr/include/signal.h" 2 3 4
extern int sigemptyset (sigset_t *__set) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int sigfillset (sigset_t *__set) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int sigaddset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int sigdelset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int sigismember (__const sigset_t *__set, int __signo)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 246 "/usr/include/signal.h" 3 4
# 1 "/usr/include/bits/sigaction.h" 1 3 4
# 25 "/usr/include/bits/sigaction.h" 3 4
struct sigaction
{
union
{
__sighandler_t sa_handler;
void (*sa_sigaction) (int, siginfo_t *, void *);
}
__sigaction_handler;
__sigset_t sa_mask;
int sa_flags;
void (*sa_restorer) (void);
};
# 247 "/usr/include/signal.h" 2 3 4
extern int sigprocmask (int __how, __const sigset_t *__restrict __set,
sigset_t *__restrict __oset) __attribute__ ((__nothrow__));
extern int sigsuspend (__const sigset_t *__set) __attribute__ ((__nonnull__ (1)));
extern int sigaction (int __sig, __const struct sigaction *__restrict __act,
struct sigaction *__restrict __oact) __attribute__ ((__nothrow__));
extern int sigpending (sigset_t *__set) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int sigwait (__const sigset_t *__restrict __set, int *__restrict __sig)
__attribute__ ((__nonnull__ (1, 2)));
extern int sigwaitinfo (__const sigset_t *__restrict __set,
siginfo_t *__restrict __info) __attribute__ ((__nonnull__ (1)));
extern int sigtimedwait (__const sigset_t *__restrict __set,
siginfo_t *__restrict __info,
__const struct timespec *__restrict __timeout)
__attribute__ ((__nonnull__ (1)));
extern int sigqueue (__pid_t __pid, int __sig, __const union sigval __val)
__attribute__ ((__nothrow__));
# 304 "/usr/include/signal.h" 3 4
extern __const char *__const _sys_siglist[65];
extern __const char *__const sys_siglist[65];
struct sigvec
{
__sighandler_t sv_handler;
int sv_mask;
int sv_flags;
};
# 328 "/usr/include/signal.h" 3 4
extern int sigvec (int __sig, __const struct sigvec *__vec,
struct sigvec *__ovec) __attribute__ ((__nothrow__));
# 1 "/usr/include/bits/sigcontext.h" 1 3 4
# 26 "/usr/include/bits/sigcontext.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 27 "/usr/include/bits/sigcontext.h" 2 3 4
struct _fpreg
{
unsigned short significand[4];
unsigned short exponent;
};
struct _fpxreg
{
unsigned short significand[4];
unsigned short exponent;
unsigned short padding[3];
};
struct _xmmreg
{
__uint32_t element[4];
};
struct _fpstate
{
__uint32_t cw;
__uint32_t sw;
__uint32_t tag;
__uint32_t ipoff;
__uint32_t cssel;
__uint32_t dataoff;
__uint32_t datasel;
struct _fpreg _st[8];
unsigned short status;
unsigned short magic;
__uint32_t _fxsr_env[6];
__uint32_t mxcsr;
__uint32_t reserved;
struct _fpxreg _fxsr_st[8];
struct _xmmreg _xmm[8];
__uint32_t padding[56];
};
# 81 "/usr/include/bits/sigcontext.h" 3 4
struct sigcontext
{
unsigned short gs, __gsh;
unsigned short fs, __fsh;
unsigned short es, __esh;
unsigned short ds, __dsh;
unsigned long edi;
unsigned long esi;
unsigned long ebp;
unsigned long esp;
unsigned long ebx;
unsigned long edx;
unsigned long ecx;
unsigned long eax;
unsigned long trapno;
unsigned long err;
unsigned long eip;
unsigned short cs, __csh;
unsigned long eflags;
unsigned long esp_at_signal;
unsigned short ss, __ssh;
struct _fpstate * fpstate;
unsigned long oldmask;
unsigned long cr2;
};
# 334 "/usr/include/signal.h" 2 3 4
extern int sigreturn (struct sigcontext *__scp) __attribute__ ((__nothrow__));
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 344 "/usr/include/signal.h" 2 3 4
extern int siginterrupt (int __sig, int __interrupt) __attribute__ ((__nothrow__));
# 1 "/usr/include/bits/sigstack.h" 1 3 4
# 26 "/usr/include/bits/sigstack.h" 3 4
struct sigstack
{
void *ss_sp;
int ss_onstack;
};
enum
{
SS_ONSTACK = 1,
SS_DISABLE
};
# 50 "/usr/include/bits/sigstack.h" 3 4
typedef struct sigaltstack
{
void *ss_sp;
int ss_flags;
size_t ss_size;
} stack_t;
# 351 "/usr/include/signal.h" 2 3 4
# 359 "/usr/include/signal.h" 3 4
extern int sigstack (struct sigstack *__ss, struct sigstack *__oss)
__attribute__ ((__nothrow__)) __attribute__ ((__deprecated__));
extern int sigaltstack (__const struct sigaltstack *__restrict __ss,
struct sigaltstack *__restrict __oss) __attribute__ ((__nothrow__));
# 388 "/usr/include/signal.h" 3 4
# 1 "/usr/include/bits/pthreadtypes.h" 1 3 4
# 23 "/usr/include/bits/pthreadtypes.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 24 "/usr/include/bits/pthreadtypes.h" 2 3 4
# 50 "/usr/include/bits/pthreadtypes.h" 3 4
typedef unsigned long int pthread_t;
typedef union
{
char __size[36];
long int __align;
} pthread_attr_t;
# 67 "/usr/include/bits/pthreadtypes.h" 3 4
typedef struct __pthread_internal_slist
{
struct __pthread_internal_slist *__next;
} __pthread_slist_t;
typedef union
{
struct __pthread_mutex_s
{
int __lock;
unsigned int __count;
int __owner;
int __kind;
unsigned int __nusers;
__extension__ union
{
int __spins;
__pthread_slist_t __list;
};
} __data;
char __size[24];
long int __align;
} pthread_mutex_t;
typedef union
{
char __size[4];
int __align;
} pthread_mutexattr_t;
typedef union
{
struct
{
int __lock;
unsigned int __futex;
__extension__ unsigned long long int __total_seq;
__extension__ unsigned long long int __wakeup_seq;
__extension__ unsigned long long int __woken_seq;
void *__mutex;
unsigned int __nwaiters;
unsigned int __broadcast_seq;
} __data;
char __size[48];
__extension__ long long int __align;
} pthread_cond_t;
typedef union
{
char __size[4];
int __align;
} pthread_condattr_t;
typedef unsigned int pthread_key_t;
typedef int pthread_once_t;
typedef union
{
# 170 "/usr/include/bits/pthreadtypes.h" 3 4
struct
{
int __lock;
unsigned int __nr_readers;
unsigned int __readers_wakeup;
unsigned int __writer_wakeup;
unsigned int __nr_readers_queued;
unsigned int __nr_writers_queued;
unsigned char __flags;
unsigned char __shared;
unsigned char __pad1;
unsigned char __pad2;
int __writer;
} __data;
char __size[32];
long int __align;
} pthread_rwlock_t;
typedef union
{
char __size[8];
long int __align;
} pthread_rwlockattr_t;
typedef volatile int pthread_spinlock_t;
typedef union
{
char __size[20];
long int __align;
} pthread_barrier_t;
typedef union
{
char __size[4];
int __align;
} pthread_barrierattr_t;
# 389 "/usr/include/signal.h" 2 3 4
# 1 "/usr/include/bits/sigthread.h" 1 3 4
# 31 "/usr/include/bits/sigthread.h" 3 4
extern int pthread_sigmask (int __how,
__const __sigset_t *__restrict __newmask,
__sigset_t *__restrict __oldmask)__attribute__ ((__nothrow__));
extern int pthread_kill (pthread_t __threadid, int __signo) __attribute__ ((__nothrow__));
# 390 "/usr/include/signal.h" 2 3 4
extern int __libc_current_sigrtmin (void) __attribute__ ((__nothrow__));
extern int __libc_current_sigrtmax (void) __attribute__ ((__nothrow__));
# 32 "/usr/include/sys/wait.h" 2 3 4
# 1 "/usr/include/sys/resource.h" 1 3 4
# 25 "/usr/include/sys/resource.h" 3 4
# 1 "/usr/include/bits/resource.h" 1 3 4
# 33 "/usr/include/bits/resource.h" 3 4
enum __rlimit_resource
{
RLIMIT_CPU = 0,
RLIMIT_FSIZE = 1,
RLIMIT_DATA = 2,
RLIMIT_STACK = 3,
RLIMIT_CORE = 4,
__RLIMIT_RSS = 5,
RLIMIT_NOFILE = 7,
__RLIMIT_OFILE = RLIMIT_NOFILE,
RLIMIT_AS = 9,
__RLIMIT_NPROC = 6,
__RLIMIT_MEMLOCK = 8,
__RLIMIT_LOCKS = 10,
__RLIMIT_SIGPENDING = 11,
__RLIMIT_MSGQUEUE = 12,
__RLIMIT_NICE = 13,
__RLIMIT_RTPRIO = 14,
__RLIMIT_NLIMITS = 15,
__RLIM_NLIMITS = __RLIMIT_NLIMITS
};
# 127 "/usr/include/bits/resource.h" 3 4
typedef __rlim_t rlim_t;
struct rlimit
{
rlim_t rlim_cur;
rlim_t rlim_max;
};
# 154 "/usr/include/bits/resource.h" 3 4
enum __rusage_who
{
RUSAGE_SELF = 0,
RUSAGE_CHILDREN = -1
};
# 1 "/usr/include/bits/time.h" 1 3 4
# 69 "/usr/include/bits/time.h" 3 4
struct timeval
{
__time_t tv_sec;
__suseconds_t tv_usec;
};
# 167 "/usr/include/bits/resource.h" 2 3 4
struct rusage
{
struct timeval ru_utime;
struct timeval ru_stime;
long int ru_maxrss;
long int ru_ixrss;
long int ru_idrss;
long int ru_isrss;
long int ru_minflt;
long int ru_majflt;
long int ru_nswap;
long int ru_inblock;
long int ru_oublock;
long int ru_msgsnd;
long int ru_msgrcv;
long int ru_nsignals;
long int ru_nvcsw;
long int ru_nivcsw;
};
enum __priority_which
{
PRIO_PROCESS = 0,
PRIO_PGRP = 1,
PRIO_USER = 2
};
# 26 "/usr/include/sys/resource.h" 2 3 4
typedef __id_t id_t;
# 43 "/usr/include/sys/resource.h" 3 4
typedef int __rlimit_resource_t;
typedef int __rusage_who_t;
typedef int __priority_which_t;
extern int getrlimit (__rlimit_resource_t __resource,
struct rlimit *__rlimits) __attribute__ ((__nothrow__));
# 70 "/usr/include/sys/resource.h" 3 4
extern int setrlimit (__rlimit_resource_t __resource,
__const struct rlimit *__rlimits) __attribute__ ((__nothrow__));
# 88 "/usr/include/sys/resource.h" 3 4
extern int getrusage (__rusage_who_t __who, struct rusage *__usage) __attribute__ ((__nothrow__));
extern int getpriority (__priority_which_t __which, id_t __who) __attribute__ ((__nothrow__));
extern int setpriority (__priority_which_t __which, id_t __who, int __prio)
__attribute__ ((__nothrow__));
# 33 "/usr/include/sys/wait.h" 2 3 4
# 1 "/usr/include/bits/waitflags.h" 1 3 4
# 39 "/usr/include/sys/wait.h" 2 3 4
# 63 "/usr/include/sys/wait.h" 3 4
typedef union
{
union wait *__uptr;
int *__iptr;
} __WAIT_STATUS __attribute__ ((__transparent_union__));
# 80 "/usr/include/sys/wait.h" 3 4
# 1 "/usr/include/bits/waitstatus.h" 1 3 4
# 65 "/usr/include/bits/waitstatus.h" 3 4
# 1 "/usr/include/endian.h" 1 3 4
# 37 "/usr/include/endian.h" 3 4
# 1 "/usr/include/bits/endian.h" 1 3 4
# 38 "/usr/include/endian.h" 2 3 4
# 66 "/usr/include/bits/waitstatus.h" 2 3 4
union wait
{
int w_status;
struct
{
unsigned int __w_termsig:7;
unsigned int __w_coredump:1;
unsigned int __w_retcode:8;
unsigned int:16;
} __wait_terminated;
struct
{
unsigned int __w_stopval:8;
unsigned int __w_stopsig:8;
unsigned int:16;
} __wait_stopped;
};
# 81 "/usr/include/sys/wait.h" 2 3 4
# 102 "/usr/include/sys/wait.h" 3 4
typedef enum
{
P_ALL,
P_PID,
P_PGID
} idtype_t;
# 116 "/usr/include/sys/wait.h" 3 4
extern __pid_t wait (__WAIT_STATUS __stat_loc);
# 139 "/usr/include/sys/wait.h" 3 4
extern __pid_t waitpid (__pid_t __pid, int *__stat_loc, int __options);
# 1 "/usr/include/bits/siginfo.h" 1 3 4
# 25 "/usr/include/bits/siginfo.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 26 "/usr/include/bits/siginfo.h" 2 3 4
# 144 "/usr/include/sys/wait.h" 2 3 4
# 155 "/usr/include/sys/wait.h" 3 4
extern int waitid (idtype_t __idtype, __id_t __id, siginfo_t *__infop,
int __options);
struct rusage;
extern __pid_t wait3 (__WAIT_STATUS __stat_loc, int __options,
struct rusage * __usage) __attribute__ ((__nothrow__));
extern __pid_t wait4 (__pid_t __pid, __WAIT_STATUS __stat_loc, int __options,
struct rusage *__usage) __attribute__ ((__nothrow__));
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_SYS_WAIT_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: netinet/in.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/netinet/in.h" 1 3 4
# 23 "/usr/include/netinet/in.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 24 "/usr/include/netinet/in.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stdint.h" 1 3 4
# 1 "/usr/include/stdint.h" 1 3 4
# 27 "/usr/include/stdint.h" 3 4
# 1 "/usr/include/bits/wchar.h" 1 3 4
# 28 "/usr/include/stdint.h" 2 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/stdint.h" 2 3 4
# 37 "/usr/include/stdint.h" 3 4
typedef signed char int8_t;
typedef short int int16_t;
typedef int int32_t;
__extension__
typedef long long int int64_t;
typedef unsigned char uint8_t;
typedef unsigned short int uint16_t;
typedef unsigned int uint32_t;
__extension__
typedef unsigned long long int uint64_t;
typedef signed char int_least8_t;
typedef short int int_least16_t;
typedef int int_least32_t;
__extension__
typedef long long int int_least64_t;
typedef unsigned char uint_least8_t;
typedef unsigned short int uint_least16_t;
typedef unsigned int uint_least32_t;
__extension__
typedef unsigned long long int uint_least64_t;
typedef signed char int_fast8_t;
typedef int int_fast16_t;
typedef int int_fast32_t;
__extension__
typedef long long int int_fast64_t;
typedef unsigned char uint_fast8_t;
typedef unsigned int uint_fast16_t;
typedef unsigned int uint_fast32_t;
__extension__
typedef unsigned long long int uint_fast64_t;
# 126 "/usr/include/stdint.h" 3 4
typedef int intptr_t;
typedef unsigned int uintptr_t;
# 138 "/usr/include/stdint.h" 3 4
__extension__
typedef long long int intmax_t;
__extension__
typedef unsigned long long int uintmax_t;
# 4 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stdint.h" 2 3 4
# 25 "/usr/include/netinet/in.h" 2 3 4
# 1 "/usr/include/sys/socket.h" 1 3 4
# 26 "/usr/include/sys/socket.h" 3 4
# 1 "/usr/include/sys/uio.h" 1 3 4
# 24 "/usr/include/sys/uio.h" 3 4
# 1 "/usr/include/sys/types.h" 1 3 4
# 29 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 32 "/usr/include/sys/types.h" 2 3 4
typedef __u_char u_char;
typedef __u_short u_short;
typedef __u_int u_int;
typedef __u_long u_long;
typedef __quad_t quad_t;
typedef __u_quad_t u_quad_t;
typedef __fsid_t fsid_t;
typedef __loff_t loff_t;
typedef __ino_t ino_t;
# 62 "/usr/include/sys/types.h" 3 4
typedef __dev_t dev_t;
typedef __gid_t gid_t;
typedef __mode_t mode_t;
typedef __nlink_t nlink_t;
typedef __uid_t uid_t;
typedef __off_t off_t;
# 100 "/usr/include/sys/types.h" 3 4
typedef __pid_t pid_t;
typedef __id_t id_t;
typedef __ssize_t ssize_t;
typedef __daddr_t daddr_t;
typedef __caddr_t caddr_t;
typedef __key_t key_t;
# 133 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/time.h" 1 3 4
# 75 "/usr/include/time.h" 3 4
typedef __time_t time_t;
# 93 "/usr/include/time.h" 3 4
typedef __clockid_t clockid_t;
# 105 "/usr/include/time.h" 3 4
typedef __timer_t timer_t;
# 134 "/usr/include/sys/types.h" 2 3 4
# 147 "/usr/include/sys/types.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 148 "/usr/include/sys/types.h" 2 3 4
typedef unsigned long int ulong;
typedef unsigned short int ushort;
typedef unsigned int uint;
# 201 "/usr/include/sys/types.h" 3 4
typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__)));
typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__)));
typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__)));
typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__)));
typedef int register_t __attribute__ ((__mode__ (__word__)));
# 217 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/endian.h" 1 3 4
# 37 "/usr/include/endian.h" 3 4
# 1 "/usr/include/bits/endian.h" 1 3 4
# 38 "/usr/include/endian.h" 2 3 4
# 218 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/select.h" 1 3 4
# 31 "/usr/include/sys/select.h" 3 4
# 1 "/usr/include/bits/select.h" 1 3 4
# 32 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/sigset.h" 1 3 4
# 24 "/usr/include/bits/sigset.h" 3 4
typedef int __sig_atomic_t;
typedef struct
{
unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))];
} __sigset_t;
# 35 "/usr/include/sys/select.h" 2 3 4
typedef __sigset_t sigset_t;
# 1 "/usr/include/time.h" 1 3 4
# 121 "/usr/include/time.h" 3 4
struct timespec
{
__time_t tv_sec;
long int tv_nsec;
};
# 45 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/time.h" 1 3 4
# 69 "/usr/include/bits/time.h" 3 4
struct timeval
{
__time_t tv_sec;
__suseconds_t tv_usec;
};
# 47 "/usr/include/sys/select.h" 2 3 4
typedef __suseconds_t suseconds_t;
typedef long int __fd_mask;
# 67 "/usr/include/sys/select.h" 3 4
typedef struct
{
__fd_mask __fds_bits[1024 / (8 * sizeof (__fd_mask))];
} fd_set;
typedef __fd_mask fd_mask;
# 99 "/usr/include/sys/select.h" 3 4
# 109 "/usr/include/sys/select.h" 3 4
extern int select (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
struct timeval *__restrict __timeout);
# 121 "/usr/include/sys/select.h" 3 4
extern int pselect (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
const struct timespec *__restrict __timeout,
const __sigset_t *__restrict __sigmask);
# 221 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/sysmacros.h" 1 3 4
# 30 "/usr/include/sys/sysmacros.h" 3 4
__extension__
extern unsigned int gnu_dev_major (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned int gnu_dev_minor (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned long long int gnu_dev_makedev (unsigned int __major,
unsigned int __minor)
__attribute__ ((__nothrow__));
# 224 "/usr/include/sys/types.h" 2 3 4
# 235 "/usr/include/sys/types.h" 3 4
typedef __blkcnt_t blkcnt_t;
typedef __fsblkcnt_t fsblkcnt_t;
typedef __fsfilcnt_t fsfilcnt_t;
# 270 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/pthreadtypes.h" 1 3 4
# 23 "/usr/include/bits/pthreadtypes.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 24 "/usr/include/bits/pthreadtypes.h" 2 3 4
# 50 "/usr/include/bits/pthreadtypes.h" 3 4
typedef unsigned long int pthread_t;
typedef union
{
char __size[36];
long int __align;
} pthread_attr_t;
# 67 "/usr/include/bits/pthreadtypes.h" 3 4
typedef struct __pthread_internal_slist
{
struct __pthread_internal_slist *__next;
} __pthread_slist_t;
typedef union
{
struct __pthread_mutex_s
{
int __lock;
unsigned int __count;
int __owner;
int __kind;
unsigned int __nusers;
__extension__ union
{
int __spins;
__pthread_slist_t __list;
};
} __data;
char __size[24];
long int __align;
} pthread_mutex_t;
typedef union
{
char __size[4];
int __align;
} pthread_mutexattr_t;
typedef union
{
struct
{
int __lock;
unsigned int __futex;
__extension__ unsigned long long int __total_seq;
__extension__ unsigned long long int __wakeup_seq;
__extension__ unsigned long long int __woken_seq;
void *__mutex;
unsigned int __nwaiters;
unsigned int __broadcast_seq;
} __data;
char __size[48];
__extension__ long long int __align;
} pthread_cond_t;
typedef union
{
char __size[4];
int __align;
} pthread_condattr_t;
typedef unsigned int pthread_key_t;
typedef int pthread_once_t;
typedef union
{
# 170 "/usr/include/bits/pthreadtypes.h" 3 4
struct
{
int __lock;
unsigned int __nr_readers;
unsigned int __readers_wakeup;
unsigned int __writer_wakeup;
unsigned int __nr_readers_queued;
unsigned int __nr_writers_queued;
unsigned char __flags;
unsigned char __shared;
unsigned char __pad1;
unsigned char __pad2;
int __writer;
} __data;
char __size[32];
long int __align;
} pthread_rwlock_t;
typedef union
{
char __size[8];
long int __align;
} pthread_rwlockattr_t;
typedef volatile int pthread_spinlock_t;
typedef union
{
char __size[20];
long int __align;
} pthread_barrier_t;
typedef union
{
char __size[4];
int __align;
} pthread_barrierattr_t;
# 271 "/usr/include/sys/types.h" 2 3 4
# 25 "/usr/include/sys/uio.h" 2 3 4
# 1 "/usr/include/bits/uio.h" 1 3 4
# 44 "/usr/include/bits/uio.h" 3 4
struct iovec
{
void *iov_base;
size_t iov_len;
};
# 30 "/usr/include/sys/uio.h" 2 3 4
# 40 "/usr/include/sys/uio.h" 3 4
extern ssize_t readv (int __fd, __const struct iovec *__iovec, int __count);
# 50 "/usr/include/sys/uio.h" 3 4
extern ssize_t writev (int __fd, __const struct iovec *__iovec, int __count);
# 29 "/usr/include/sys/socket.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 31 "/usr/include/sys/socket.h" 2 3 4
# 1 "/usr/include/bits/socket.h" 1 3 4
# 30 "/usr/include/bits/socket.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 31 "/usr/include/bits/socket.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 1 3 4
# 34 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/syslimits.h" 1 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 1 3 4
# 169 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 3 4
# 1 "/usr/include/limits.h" 1 3 4
# 145 "/usr/include/limits.h" 3 4
# 1 "/usr/include/bits/posix1_lim.h" 1 3 4
# 153 "/usr/include/bits/posix1_lim.h" 3 4
# 1 "/usr/include/bits/local_lim.h" 1 3 4
# 36 "/usr/include/bits/local_lim.h" 3 4
# 1 "/usr/include/linux/limits.h" 1 3 4
# 37 "/usr/include/bits/local_lim.h" 2 3 4
# 154 "/usr/include/bits/posix1_lim.h" 2 3 4
# 146 "/usr/include/limits.h" 2 3 4
# 1 "/usr/include/bits/posix2_lim.h" 1 3 4
# 150 "/usr/include/limits.h" 2 3 4
# 170 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 2 3 4
# 8 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/syslimits.h" 2 3 4
# 35 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 2 3 4
# 33 "/usr/include/bits/socket.h" 2 3 4
typedef __socklen_t socklen_t;
enum __socket_type
{
SOCK_STREAM = 1,
SOCK_DGRAM = 2,
SOCK_RAW = 3,
SOCK_RDM = 4,
SOCK_SEQPACKET = 5,
SOCK_PACKET = 10
};
# 147 "/usr/include/bits/socket.h" 3 4
# 1 "/usr/include/bits/sockaddr.h" 1 3 4
# 29 "/usr/include/bits/sockaddr.h" 3 4
typedef unsigned short int sa_family_t;
# 148 "/usr/include/bits/socket.h" 2 3 4
struct sockaddr
{
sa_family_t sa_family;
char sa_data[14];
};
# 167 "/usr/include/bits/socket.h" 3 4
struct sockaddr_storage
{
sa_family_t ss_family;
__uint32_t __ss_align;
char __ss_padding[(128 - (2 * sizeof (__uint32_t)))];
};
enum
{
MSG_OOB = 0x01,
MSG_PEEK = 0x02,
MSG_DONTROUTE = 0x04,
MSG_CTRUNC = 0x08,
MSG_PROXY = 0x10,
MSG_TRUNC = 0x20,
MSG_DONTWAIT = 0x40,
MSG_EOR = 0x80,
MSG_WAITALL = 0x100,
MSG_FIN = 0x200,
MSG_SYN = 0x400,
MSG_CONFIRM = 0x800,
MSG_RST = 0x1000,
MSG_ERRQUEUE = 0x2000,
MSG_NOSIGNAL = 0x4000,
MSG_MORE = 0x8000,
MSG_CMSG_CLOEXEC = 0x40000000
};
struct msghdr
{
void *msg_name;
socklen_t msg_namelen;
struct iovec *msg_iov;
size_t msg_iovlen;
void *msg_control;
size_t msg_controllen;
int msg_flags;
};
struct cmsghdr
{
size_t cmsg_len;
int cmsg_level;
int cmsg_type;
__extension__ unsigned char __cmsg_data [];
};
# 273 "/usr/include/bits/socket.h" 3 4
extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr,
struct cmsghdr *__cmsg) __attribute__ ((__nothrow__));
# 300 "/usr/include/bits/socket.h" 3 4
enum
{
SCM_RIGHTS = 0x01
, SCM_CREDENTIALS = 0x02
};
struct ucred
{
pid_t pid;
uid_t uid;
gid_t gid;
};
# 1 "/usr/include/asm/socket.h" 1 3 4
# 1 "/usr/include/asm/sockios.h" 1 3 4
# 5 "/usr/include/asm/socket.h" 2 3 4
# 321 "/usr/include/bits/socket.h" 2 3 4
struct linger
{
int l_onoff;
int l_linger;
};
# 37 "/usr/include/sys/socket.h" 2 3 4
struct osockaddr
{
unsigned short int sa_family;
unsigned char sa_data[14];
};
enum
{
SHUT_RD = 0,
SHUT_WR,
SHUT_RDWR
};
# 101 "/usr/include/sys/socket.h" 3 4
extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__));
extern int socketpair (int __domain, int __type, int __protocol,
int __fds[2]) __attribute__ ((__nothrow__));
extern int bind (int __fd, __const struct sockaddr * __addr, socklen_t __len)
__attribute__ ((__nothrow__));
extern int getsockname (int __fd, struct sockaddr *__restrict __addr,
socklen_t *__restrict __len) __attribute__ ((__nothrow__));
# 125 "/usr/include/sys/socket.h" 3 4
extern int connect (int __fd, __const struct sockaddr * __addr, socklen_t __len);
extern int getpeername (int __fd, struct sockaddr *__restrict __addr,
socklen_t *__restrict __len) __attribute__ ((__nothrow__));
extern ssize_t send (int __fd, __const void *__buf, size_t __n, int __flags);
extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags);
extern ssize_t sendto (int __fd, __const void *__buf, size_t __n,
int __flags, __const struct sockaddr * __addr,
socklen_t __addr_len);
# 162 "/usr/include/sys/socket.h" 3 4
extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n,
int __flags, struct sockaddr *__restrict __addr,
socklen_t *__restrict __addr_len);
extern ssize_t sendmsg (int __fd, __const struct msghdr *__message,
int __flags);
extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags);
extern int getsockopt (int __fd, int __level, int __optname,
void *__restrict __optval,
socklen_t *__restrict __optlen) __attribute__ ((__nothrow__));
extern int setsockopt (int __fd, int __level, int __optname,
__const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__));
extern int listen (int __fd, int __n) __attribute__ ((__nothrow__));
# 210 "/usr/include/sys/socket.h" 3 4
extern int accept (int __fd, struct sockaddr *__restrict __addr,
socklen_t *__restrict __addr_len);
extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__));
extern int sockatmark (int __fd) __attribute__ ((__nothrow__));
extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__));
# 241 "/usr/include/sys/socket.h" 3 4
# 26 "/usr/include/netinet/in.h" 2 3 4
enum
{
IPPROTO_IP = 0,
IPPROTO_HOPOPTS = 0,
IPPROTO_ICMP = 1,
IPPROTO_IGMP = 2,
IPPROTO_IPIP = 4,
IPPROTO_TCP = 6,
IPPROTO_EGP = 8,
IPPROTO_PUP = 12,
IPPROTO_UDP = 17,
IPPROTO_IDP = 22,
IPPROTO_TP = 29,
IPPROTO_IPV6 = 41,
IPPROTO_ROUTING = 43,
IPPROTO_FRAGMENT = 44,
IPPROTO_RSVP = 46,
IPPROTO_GRE = 47,
IPPROTO_ESP = 50,
IPPROTO_AH = 51,
IPPROTO_ICMPV6 = 58,
IPPROTO_NONE = 59,
IPPROTO_DSTOPTS = 60,
IPPROTO_MTP = 92,
IPPROTO_ENCAP = 98,
IPPROTO_PIM = 103,
IPPROTO_COMP = 108,
IPPROTO_SCTP = 132,
IPPROTO_RAW = 255,
IPPROTO_MAX
};
typedef uint16_t in_port_t;
enum
{
IPPORT_ECHO = 7,
IPPORT_DISCARD = 9,
IPPORT_SYSTAT = 11,
IPPORT_DAYTIME = 13,
IPPORT_NETSTAT = 15,
IPPORT_FTP = 21,
IPPORT_TELNET = 23,
IPPORT_SMTP = 25,
IPPORT_TIMESERVER = 37,
IPPORT_NAMESERVER = 42,
IPPORT_WHOIS = 43,
IPPORT_MTP = 57,
IPPORT_TFTP = 69,
IPPORT_RJE = 77,
IPPORT_FINGER = 79,
IPPORT_TTYLINK = 87,
IPPORT_SUPDUP = 95,
IPPORT_EXECSERVER = 512,
IPPORT_LOGINSERVER = 513,
IPPORT_CMDSERVER = 514,
IPPORT_EFSSERVER = 520,
IPPORT_BIFFUDP = 512,
IPPORT_WHOSERVER = 513,
IPPORT_ROUTESERVER = 520,
IPPORT_RESERVED = 1024,
IPPORT_USERRESERVED = 5000
};
typedef uint32_t in_addr_t;
struct in_addr
{
in_addr_t s_addr;
};
# 194 "/usr/include/netinet/in.h" 3 4
struct in6_addr
{
union
{
uint8_t u6_addr8[16];
uint16_t u6_addr16[8];
uint32_t u6_addr32[4];
} in6_u;
};
extern const struct in6_addr in6addr_any;
extern const struct in6_addr in6addr_loopback;
# 217 "/usr/include/netinet/in.h" 3 4
struct sockaddr_in
{
sa_family_t sin_family;
in_port_t sin_port;
struct in_addr sin_addr;
unsigned char sin_zero[sizeof (struct sockaddr) -
(sizeof (unsigned short int)) -
sizeof (in_port_t) -
sizeof (struct in_addr)];
};
struct sockaddr_in6
{
sa_family_t sin6_family;
in_port_t sin6_port;
uint32_t sin6_flowinfo;
struct in6_addr sin6_addr;
uint32_t sin6_scope_id;
};
struct ip_mreq
{
struct in_addr imr_multiaddr;
struct in_addr imr_interface;
};
struct ip_mreq_source
{
struct in_addr imr_multiaddr;
struct in_addr imr_interface;
struct in_addr imr_sourceaddr;
};
struct ipv6_mreq
{
struct in6_addr ipv6mr_multiaddr;
unsigned int ipv6mr_interface;
};
struct group_req
{
uint32_t gr_interface;
struct sockaddr_storage gr_group;
};
struct group_source_req
{
uint32_t gsr_interface;
struct sockaddr_storage gsr_group;
struct sockaddr_storage gsr_source;
};
struct ip_msfilter
{
struct in_addr imsf_multiaddr;
struct in_addr imsf_interface;
uint32_t imsf_fmode;
uint32_t imsf_numsrc;
struct in_addr imsf_slist[1];
};
struct group_filter
{
uint32_t gf_interface;
struct sockaddr_storage gf_group;
uint32_t gf_fmode;
uint32_t gf_numsrc;
struct sockaddr_storage gf_slist[1];
};
# 343 "/usr/include/netinet/in.h" 3 4
# 1 "/usr/include/bits/in.h" 1 3 4
# 82 "/usr/include/bits/in.h" 3 4
struct ip_opts
{
struct in_addr ip_dst;
char ip_opts[40];
};
struct ip_mreqn
{
struct in_addr imr_multiaddr;
struct in_addr imr_address;
int imr_ifindex;
};
struct in_pktinfo
{
int ipi_ifindex;
struct in_addr ipi_spec_dst;
struct in_addr ipi_addr;
};
# 344 "/usr/include/netinet/in.h" 2 3 4
# 352 "/usr/include/netinet/in.h" 3 4
extern uint32_t ntohl (uint32_t __netlong) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern uint16_t ntohs (uint16_t __netshort)
__attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern uint32_t htonl (uint32_t __hostlong)
__attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern uint16_t htons (uint16_t __hostshort)
__attribute__ ((__nothrow__)) __attribute__ ((__const__));
# 1 "/usr/include/bits/byteswap.h" 1 3 4
# 28 "/usr/include/bits/byteswap.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/byteswap.h" 2 3 4
# 364 "/usr/include/netinet/in.h" 2 3 4
# 426 "/usr/include/netinet/in.h" 3 4
extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) __attribute__ ((__nothrow__));
extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in)
__attribute__ ((__nothrow__));
# 454 "/usr/include/netinet/in.h" 3 4
struct in6_pktinfo
{
struct in6_addr ipi6_addr;
unsigned int ipi6_ifindex;
};
struct ip6_mtuinfo
{
struct sockaddr_in6 ip6m_addr;
uint32_t ip6m_mtu;
};
# 549 "/usr/include/netinet/in.h" 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_NETINET_IN_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: netdb.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/netdb.h" 1 3 4
# 26 "/usr/include/netdb.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 27 "/usr/include/netdb.h" 2 3 4
# 1 "/usr/include/netinet/in.h" 1 3 4
# 24 "/usr/include/netinet/in.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stdint.h" 1 3 4
# 1 "/usr/include/stdint.h" 1 3 4
# 27 "/usr/include/stdint.h" 3 4
# 1 "/usr/include/bits/wchar.h" 1 3 4
# 28 "/usr/include/stdint.h" 2 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/stdint.h" 2 3 4
# 37 "/usr/include/stdint.h" 3 4
typedef signed char int8_t;
typedef short int int16_t;
typedef int int32_t;
__extension__
typedef long long int int64_t;
typedef unsigned char uint8_t;
typedef unsigned short int uint16_t;
typedef unsigned int uint32_t;
__extension__
typedef unsigned long long int uint64_t;
typedef signed char int_least8_t;
typedef short int int_least16_t;
typedef int int_least32_t;
__extension__
typedef long long int int_least64_t;
typedef unsigned char uint_least8_t;
typedef unsigned short int uint_least16_t;
typedef unsigned int uint_least32_t;
__extension__
typedef unsigned long long int uint_least64_t;
typedef signed char int_fast8_t;
typedef int int_fast16_t;
typedef int int_fast32_t;
__extension__
typedef long long int int_fast64_t;
typedef unsigned char uint_fast8_t;
typedef unsigned int uint_fast16_t;
typedef unsigned int uint_fast32_t;
__extension__
typedef unsigned long long int uint_fast64_t;
# 126 "/usr/include/stdint.h" 3 4
typedef int intptr_t;
typedef unsigned int uintptr_t;
# 138 "/usr/include/stdint.h" 3 4
__extension__
typedef long long int intmax_t;
__extension__
typedef unsigned long long int uintmax_t;
# 4 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stdint.h" 2 3 4
# 25 "/usr/include/netinet/in.h" 2 3 4
# 1 "/usr/include/sys/socket.h" 1 3 4
# 26 "/usr/include/sys/socket.h" 3 4
# 1 "/usr/include/sys/uio.h" 1 3 4
# 24 "/usr/include/sys/uio.h" 3 4
# 1 "/usr/include/sys/types.h" 1 3 4
# 29 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 32 "/usr/include/sys/types.h" 2 3 4
typedef __u_char u_char;
typedef __u_short u_short;
typedef __u_int u_int;
typedef __u_long u_long;
typedef __quad_t quad_t;
typedef __u_quad_t u_quad_t;
typedef __fsid_t fsid_t;
typedef __loff_t loff_t;
typedef __ino_t ino_t;
# 62 "/usr/include/sys/types.h" 3 4
typedef __dev_t dev_t;
typedef __gid_t gid_t;
typedef __mode_t mode_t;
typedef __nlink_t nlink_t;
typedef __uid_t uid_t;
typedef __off_t off_t;
# 100 "/usr/include/sys/types.h" 3 4
typedef __pid_t pid_t;
typedef __id_t id_t;
typedef __ssize_t ssize_t;
typedef __daddr_t daddr_t;
typedef __caddr_t caddr_t;
typedef __key_t key_t;
# 133 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/time.h" 1 3 4
# 75 "/usr/include/time.h" 3 4
typedef __time_t time_t;
# 93 "/usr/include/time.h" 3 4
typedef __clockid_t clockid_t;
# 105 "/usr/include/time.h" 3 4
typedef __timer_t timer_t;
# 134 "/usr/include/sys/types.h" 2 3 4
# 147 "/usr/include/sys/types.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 148 "/usr/include/sys/types.h" 2 3 4
typedef unsigned long int ulong;
typedef unsigned short int ushort;
typedef unsigned int uint;
# 201 "/usr/include/sys/types.h" 3 4
typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__)));
typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__)));
typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__)));
typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__)));
typedef int register_t __attribute__ ((__mode__ (__word__)));
# 217 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/endian.h" 1 3 4
# 37 "/usr/include/endian.h" 3 4
# 1 "/usr/include/bits/endian.h" 1 3 4
# 38 "/usr/include/endian.h" 2 3 4
# 218 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/select.h" 1 3 4
# 31 "/usr/include/sys/select.h" 3 4
# 1 "/usr/include/bits/select.h" 1 3 4
# 32 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/sigset.h" 1 3 4
# 24 "/usr/include/bits/sigset.h" 3 4
typedef int __sig_atomic_t;
typedef struct
{
unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))];
} __sigset_t;
# 35 "/usr/include/sys/select.h" 2 3 4
typedef __sigset_t sigset_t;
# 1 "/usr/include/time.h" 1 3 4
# 121 "/usr/include/time.h" 3 4
struct timespec
{
__time_t tv_sec;
long int tv_nsec;
};
# 45 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/time.h" 1 3 4
# 69 "/usr/include/bits/time.h" 3 4
struct timeval
{
__time_t tv_sec;
__suseconds_t tv_usec;
};
# 47 "/usr/include/sys/select.h" 2 3 4
typedef __suseconds_t suseconds_t;
typedef long int __fd_mask;
# 67 "/usr/include/sys/select.h" 3 4
typedef struct
{
__fd_mask __fds_bits[1024 / (8 * sizeof (__fd_mask))];
} fd_set;
typedef __fd_mask fd_mask;
# 99 "/usr/include/sys/select.h" 3 4
# 109 "/usr/include/sys/select.h" 3 4
extern int select (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
struct timeval *__restrict __timeout);
# 121 "/usr/include/sys/select.h" 3 4
extern int pselect (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
const struct timespec *__restrict __timeout,
const __sigset_t *__restrict __sigmask);
# 221 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/sysmacros.h" 1 3 4
# 30 "/usr/include/sys/sysmacros.h" 3 4
__extension__
extern unsigned int gnu_dev_major (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned int gnu_dev_minor (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned long long int gnu_dev_makedev (unsigned int __major,
unsigned int __minor)
__attribute__ ((__nothrow__));
# 224 "/usr/include/sys/types.h" 2 3 4
# 235 "/usr/include/sys/types.h" 3 4
typedef __blkcnt_t blkcnt_t;
typedef __fsblkcnt_t fsblkcnt_t;
typedef __fsfilcnt_t fsfilcnt_t;
# 270 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/pthreadtypes.h" 1 3 4
# 23 "/usr/include/bits/pthreadtypes.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 24 "/usr/include/bits/pthreadtypes.h" 2 3 4
# 50 "/usr/include/bits/pthreadtypes.h" 3 4
typedef unsigned long int pthread_t;
typedef union
{
char __size[36];
long int __align;
} pthread_attr_t;
# 67 "/usr/include/bits/pthreadtypes.h" 3 4
typedef struct __pthread_internal_slist
{
struct __pthread_internal_slist *__next;
} __pthread_slist_t;
typedef union
{
struct __pthread_mutex_s
{
int __lock;
unsigned int __count;
int __owner;
int __kind;
unsigned int __nusers;
__extension__ union
{
int __spins;
__pthread_slist_t __list;
};
} __data;
char __size[24];
long int __align;
} pthread_mutex_t;
typedef union
{
char __size[4];
int __align;
} pthread_mutexattr_t;
typedef union
{
struct
{
int __lock;
unsigned int __futex;
__extension__ unsigned long long int __total_seq;
__extension__ unsigned long long int __wakeup_seq;
__extension__ unsigned long long int __woken_seq;
void *__mutex;
unsigned int __nwaiters;
unsigned int __broadcast_seq;
} __data;
char __size[48];
__extension__ long long int __align;
} pthread_cond_t;
typedef union
{
char __size[4];
int __align;
} pthread_condattr_t;
typedef unsigned int pthread_key_t;
typedef int pthread_once_t;
typedef union
{
# 170 "/usr/include/bits/pthreadtypes.h" 3 4
struct
{
int __lock;
unsigned int __nr_readers;
unsigned int __readers_wakeup;
unsigned int __writer_wakeup;
unsigned int __nr_readers_queued;
unsigned int __nr_writers_queued;
unsigned char __flags;
unsigned char __shared;
unsigned char __pad1;
unsigned char __pad2;
int __writer;
} __data;
char __size[32];
long int __align;
} pthread_rwlock_t;
typedef union
{
char __size[8];
long int __align;
} pthread_rwlockattr_t;
typedef volatile int pthread_spinlock_t;
typedef union
{
char __size[20];
long int __align;
} pthread_barrier_t;
typedef union
{
char __size[4];
int __align;
} pthread_barrierattr_t;
# 271 "/usr/include/sys/types.h" 2 3 4
# 25 "/usr/include/sys/uio.h" 2 3 4
# 1 "/usr/include/bits/uio.h" 1 3 4
# 44 "/usr/include/bits/uio.h" 3 4
struct iovec
{
void *iov_base;
size_t iov_len;
};
# 30 "/usr/include/sys/uio.h" 2 3 4
# 40 "/usr/include/sys/uio.h" 3 4
extern ssize_t readv (int __fd, __const struct iovec *__iovec, int __count);
# 50 "/usr/include/sys/uio.h" 3 4
extern ssize_t writev (int __fd, __const struct iovec *__iovec, int __count);
# 29 "/usr/include/sys/socket.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 31 "/usr/include/sys/socket.h" 2 3 4
# 1 "/usr/include/bits/socket.h" 1 3 4
# 30 "/usr/include/bits/socket.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 31 "/usr/include/bits/socket.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 1 3 4
# 34 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/syslimits.h" 1 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 1 3 4
# 169 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 3 4
# 1 "/usr/include/limits.h" 1 3 4
# 145 "/usr/include/limits.h" 3 4
# 1 "/usr/include/bits/posix1_lim.h" 1 3 4
# 153 "/usr/include/bits/posix1_lim.h" 3 4
# 1 "/usr/include/bits/local_lim.h" 1 3 4
# 36 "/usr/include/bits/local_lim.h" 3 4
# 1 "/usr/include/linux/limits.h" 1 3 4
# 37 "/usr/include/bits/local_lim.h" 2 3 4
# 154 "/usr/include/bits/posix1_lim.h" 2 3 4
# 146 "/usr/include/limits.h" 2 3 4
# 1 "/usr/include/bits/posix2_lim.h" 1 3 4
# 150 "/usr/include/limits.h" 2 3 4
# 170 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 2 3 4
# 8 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/syslimits.h" 2 3 4
# 35 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 2 3 4
# 33 "/usr/include/bits/socket.h" 2 3 4
typedef __socklen_t socklen_t;
enum __socket_type
{
SOCK_STREAM = 1,
SOCK_DGRAM = 2,
SOCK_RAW = 3,
SOCK_RDM = 4,
SOCK_SEQPACKET = 5,
SOCK_PACKET = 10
};
# 147 "/usr/include/bits/socket.h" 3 4
# 1 "/usr/include/bits/sockaddr.h" 1 3 4
# 29 "/usr/include/bits/sockaddr.h" 3 4
typedef unsigned short int sa_family_t;
# 148 "/usr/include/bits/socket.h" 2 3 4
struct sockaddr
{
sa_family_t sa_family;
char sa_data[14];
};
# 167 "/usr/include/bits/socket.h" 3 4
struct sockaddr_storage
{
sa_family_t ss_family;
__uint32_t __ss_align;
char __ss_padding[(128 - (2 * sizeof (__uint32_t)))];
};
enum
{
MSG_OOB = 0x01,
MSG_PEEK = 0x02,
MSG_DONTROUTE = 0x04,
MSG_CTRUNC = 0x08,
MSG_PROXY = 0x10,
MSG_TRUNC = 0x20,
MSG_DONTWAIT = 0x40,
MSG_EOR = 0x80,
MSG_WAITALL = 0x100,
MSG_FIN = 0x200,
MSG_SYN = 0x400,
MSG_CONFIRM = 0x800,
MSG_RST = 0x1000,
MSG_ERRQUEUE = 0x2000,
MSG_NOSIGNAL = 0x4000,
MSG_MORE = 0x8000,
MSG_CMSG_CLOEXEC = 0x40000000
};
struct msghdr
{
void *msg_name;
socklen_t msg_namelen;
struct iovec *msg_iov;
size_t msg_iovlen;
void *msg_control;
size_t msg_controllen;
int msg_flags;
};
struct cmsghdr
{
size_t cmsg_len;
int cmsg_level;
int cmsg_type;
__extension__ unsigned char __cmsg_data [];
};
# 273 "/usr/include/bits/socket.h" 3 4
extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr,
struct cmsghdr *__cmsg) __attribute__ ((__nothrow__));
# 300 "/usr/include/bits/socket.h" 3 4
enum
{
SCM_RIGHTS = 0x01
, SCM_CREDENTIALS = 0x02
};
struct ucred
{
pid_t pid;
uid_t uid;
gid_t gid;
};
# 1 "/usr/include/asm/socket.h" 1 3 4
# 1 "/usr/include/asm/sockios.h" 1 3 4
# 5 "/usr/include/asm/socket.h" 2 3 4
# 321 "/usr/include/bits/socket.h" 2 3 4
struct linger
{
int l_onoff;
int l_linger;
};
# 37 "/usr/include/sys/socket.h" 2 3 4
struct osockaddr
{
unsigned short int sa_family;
unsigned char sa_data[14];
};
enum
{
SHUT_RD = 0,
SHUT_WR,
SHUT_RDWR
};
# 101 "/usr/include/sys/socket.h" 3 4
extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__));
extern int socketpair (int __domain, int __type, int __protocol,
int __fds[2]) __attribute__ ((__nothrow__));
extern int bind (int __fd, __const struct sockaddr * __addr, socklen_t __len)
__attribute__ ((__nothrow__));
extern int getsockname (int __fd, struct sockaddr *__restrict __addr,
socklen_t *__restrict __len) __attribute__ ((__nothrow__));
# 125 "/usr/include/sys/socket.h" 3 4
extern int connect (int __fd, __const struct sockaddr * __addr, socklen_t __len);
extern int getpeername (int __fd, struct sockaddr *__restrict __addr,
socklen_t *__restrict __len) __attribute__ ((__nothrow__));
extern ssize_t send (int __fd, __const void *__buf, size_t __n, int __flags);
extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags);
extern ssize_t sendto (int __fd, __const void *__buf, size_t __n,
int __flags, __const struct sockaddr * __addr,
socklen_t __addr_len);
# 162 "/usr/include/sys/socket.h" 3 4
extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n,
int __flags, struct sockaddr *__restrict __addr,
socklen_t *__restrict __addr_len);
extern ssize_t sendmsg (int __fd, __const struct msghdr *__message,
int __flags);
extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags);
extern int getsockopt (int __fd, int __level, int __optname,
void *__restrict __optval,
socklen_t *__restrict __optlen) __attribute__ ((__nothrow__));
extern int setsockopt (int __fd, int __level, int __optname,
__const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__));
extern int listen (int __fd, int __n) __attribute__ ((__nothrow__));
# 210 "/usr/include/sys/socket.h" 3 4
extern int accept (int __fd, struct sockaddr *__restrict __addr,
socklen_t *__restrict __addr_len);
extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__));
extern int sockatmark (int __fd) __attribute__ ((__nothrow__));
extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__));
# 241 "/usr/include/sys/socket.h" 3 4
# 26 "/usr/include/netinet/in.h" 2 3 4
enum
{
IPPROTO_IP = 0,
IPPROTO_HOPOPTS = 0,
IPPROTO_ICMP = 1,
IPPROTO_IGMP = 2,
IPPROTO_IPIP = 4,
IPPROTO_TCP = 6,
IPPROTO_EGP = 8,
IPPROTO_PUP = 12,
IPPROTO_UDP = 17,
IPPROTO_IDP = 22,
IPPROTO_TP = 29,
IPPROTO_IPV6 = 41,
IPPROTO_ROUTING = 43,
IPPROTO_FRAGMENT = 44,
IPPROTO_RSVP = 46,
IPPROTO_GRE = 47,
IPPROTO_ESP = 50,
IPPROTO_AH = 51,
IPPROTO_ICMPV6 = 58,
IPPROTO_NONE = 59,
IPPROTO_DSTOPTS = 60,
IPPROTO_MTP = 92,
IPPROTO_ENCAP = 98,
IPPROTO_PIM = 103,
IPPROTO_COMP = 108,
IPPROTO_SCTP = 132,
IPPROTO_RAW = 255,
IPPROTO_MAX
};
typedef uint16_t in_port_t;
enum
{
IPPORT_ECHO = 7,
IPPORT_DISCARD = 9,
IPPORT_SYSTAT = 11,
IPPORT_DAYTIME = 13,
IPPORT_NETSTAT = 15,
IPPORT_FTP = 21,
IPPORT_TELNET = 23,
IPPORT_SMTP = 25,
IPPORT_TIMESERVER = 37,
IPPORT_NAMESERVER = 42,
IPPORT_WHOIS = 43,
IPPORT_MTP = 57,
IPPORT_TFTP = 69,
IPPORT_RJE = 77,
IPPORT_FINGER = 79,
IPPORT_TTYLINK = 87,
IPPORT_SUPDUP = 95,
IPPORT_EXECSERVER = 512,
IPPORT_LOGINSERVER = 513,
IPPORT_CMDSERVER = 514,
IPPORT_EFSSERVER = 520,
IPPORT_BIFFUDP = 512,
IPPORT_WHOSERVER = 513,
IPPORT_ROUTESERVER = 520,
IPPORT_RESERVED = 1024,
IPPORT_USERRESERVED = 5000
};
typedef uint32_t in_addr_t;
struct in_addr
{
in_addr_t s_addr;
};
# 194 "/usr/include/netinet/in.h" 3 4
struct in6_addr
{
union
{
uint8_t u6_addr8[16];
uint16_t u6_addr16[8];
uint32_t u6_addr32[4];
} in6_u;
};
extern const struct in6_addr in6addr_any;
extern const struct in6_addr in6addr_loopback;
# 217 "/usr/include/netinet/in.h" 3 4
struct sockaddr_in
{
sa_family_t sin_family;
in_port_t sin_port;
struct in_addr sin_addr;
unsigned char sin_zero[sizeof (struct sockaddr) -
(sizeof (unsigned short int)) -
sizeof (in_port_t) -
sizeof (struct in_addr)];
};
struct sockaddr_in6
{
sa_family_t sin6_family;
in_port_t sin6_port;
uint32_t sin6_flowinfo;
struct in6_addr sin6_addr;
uint32_t sin6_scope_id;
};
struct ip_mreq
{
struct in_addr imr_multiaddr;
struct in_addr imr_interface;
};
struct ip_mreq_source
{
struct in_addr imr_multiaddr;
struct in_addr imr_interface;
struct in_addr imr_sourceaddr;
};
struct ipv6_mreq
{
struct in6_addr ipv6mr_multiaddr;
unsigned int ipv6mr_interface;
};
struct group_req
{
uint32_t gr_interface;
struct sockaddr_storage gr_group;
};
struct group_source_req
{
uint32_t gsr_interface;
struct sockaddr_storage gsr_group;
struct sockaddr_storage gsr_source;
};
struct ip_msfilter
{
struct in_addr imsf_multiaddr;
struct in_addr imsf_interface;
uint32_t imsf_fmode;
uint32_t imsf_numsrc;
struct in_addr imsf_slist[1];
};
struct group_filter
{
uint32_t gf_interface;
struct sockaddr_storage gf_group;
uint32_t gf_fmode;
uint32_t gf_numsrc;
struct sockaddr_storage gf_slist[1];
};
# 343 "/usr/include/netinet/in.h" 3 4
# 1 "/usr/include/bits/in.h" 1 3 4
# 82 "/usr/include/bits/in.h" 3 4
struct ip_opts
{
struct in_addr ip_dst;
char ip_opts[40];
};
struct ip_mreqn
{
struct in_addr imr_multiaddr;
struct in_addr imr_address;
int imr_ifindex;
};
struct in_pktinfo
{
int ipi_ifindex;
struct in_addr ipi_spec_dst;
struct in_addr ipi_addr;
};
# 344 "/usr/include/netinet/in.h" 2 3 4
# 352 "/usr/include/netinet/in.h" 3 4
extern uint32_t ntohl (uint32_t __netlong) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern uint16_t ntohs (uint16_t __netshort)
__attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern uint32_t htonl (uint32_t __hostlong)
__attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern uint16_t htons (uint16_t __hostshort)
__attribute__ ((__nothrow__)) __attribute__ ((__const__));
# 1 "/usr/include/bits/byteswap.h" 1 3 4
# 28 "/usr/include/bits/byteswap.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/byteswap.h" 2 3 4
# 364 "/usr/include/netinet/in.h" 2 3 4
# 426 "/usr/include/netinet/in.h" 3 4
extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) __attribute__ ((__nothrow__));
extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in)
__attribute__ ((__nothrow__));
# 454 "/usr/include/netinet/in.h" 3 4
struct in6_pktinfo
{
struct in6_addr ipi6_addr;
unsigned int ipi6_ifindex;
};
struct ip6_mtuinfo
{
struct sockaddr_in6 ip6m_addr;
uint32_t ip6m_mtu;
};
# 549 "/usr/include/netinet/in.h" 3 4
# 29 "/usr/include/netdb.h" 2 3 4
# 1 "/usr/include/rpc/netdb.h" 1 3 4
# 42 "/usr/include/rpc/netdb.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 43 "/usr/include/rpc/netdb.h" 2 3 4
struct rpcent
{
char *r_name;
char **r_aliases;
int r_number;
};
extern void setrpcent (int __stayopen) __attribute__ ((__nothrow__));
extern void endrpcent (void) __attribute__ ((__nothrow__));
extern struct rpcent *getrpcbyname (__const char *__name) __attribute__ ((__nothrow__));
extern struct rpcent *getrpcbynumber (int __number) __attribute__ ((__nothrow__));
extern struct rpcent *getrpcent (void) __attribute__ ((__nothrow__));
extern int getrpcbyname_r (__const char *__name, struct rpcent *__result_buf,
char *__buffer, size_t __buflen,
struct rpcent **__result) __attribute__ ((__nothrow__));
extern int getrpcbynumber_r (int __number, struct rpcent *__result_buf,
char *__buffer, size_t __buflen,
struct rpcent **__result) __attribute__ ((__nothrow__));
extern int getrpcent_r (struct rpcent *__result_buf, char *__buffer,
size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__));
# 34 "/usr/include/netdb.h" 2 3 4
# 43 "/usr/include/netdb.h" 3 4
# 1 "/usr/include/bits/netdb.h" 1 3 4
# 27 "/usr/include/bits/netdb.h" 3 4
struct netent
{
char *n_name;
char **n_aliases;
int n_addrtype;
uint32_t n_net;
};
# 44 "/usr/include/netdb.h" 2 3 4
# 54 "/usr/include/netdb.h" 3 4
extern int *__h_errno_location (void) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
# 88 "/usr/include/netdb.h" 3 4
extern void herror (__const char *__str) __attribute__ ((__nothrow__));
extern __const char *hstrerror (int __err_num) __attribute__ ((__nothrow__));
struct hostent
{
char *h_name;
char **h_aliases;
int h_addrtype;
int h_length;
char **h_addr_list;
};
extern void sethostent (int __stay_open);
extern void endhostent (void);
extern struct hostent *gethostent (void);
extern struct hostent *gethostbyaddr (__const void *__addr, __socklen_t __len,
int __type);
extern struct hostent *gethostbyname (__const char *__name);
# 149 "/usr/include/netdb.h" 3 4
extern struct hostent *gethostbyname2 (__const char *__name, int __af);
# 161 "/usr/include/netdb.h" 3 4
extern int gethostent_r (struct hostent *__restrict __result_buf,
char *__restrict __buf, size_t __buflen,
struct hostent **__restrict __result,
int *__restrict __h_errnop);
extern int gethostbyaddr_r (__const void *__restrict __addr, __socklen_t __len,
int __type,
struct hostent *__restrict __result_buf,
char *__restrict __buf, size_t __buflen,
struct hostent **__restrict __result,
int *__restrict __h_errnop);
extern int gethostbyname_r (__const char *__restrict __name,
struct hostent *__restrict __result_buf,
char *__restrict __buf, size_t __buflen,
struct hostent **__restrict __result,
int *__restrict __h_errnop);
extern int gethostbyname2_r (__const char *__restrict __name, int __af,
struct hostent *__restrict __result_buf,
char *__restrict __buf, size_t __buflen,
struct hostent **__restrict __result,
int *__restrict __h_errnop);
# 192 "/usr/include/netdb.h" 3 4
extern void setnetent (int __stay_open);
extern void endnetent (void);
extern struct netent *getnetent (void);
extern struct netent *getnetbyaddr (uint32_t __net, int __type);
extern struct netent *getnetbyname (__const char *__name);
# 231 "/usr/include/netdb.h" 3 4
extern int getnetent_r (struct netent *__restrict __result_buf,
char *__restrict __buf, size_t __buflen,
struct netent **__restrict __result,
int *__restrict __h_errnop);
extern int getnetbyaddr_r (uint32_t __net, int __type,
struct netent *__restrict __result_buf,
char *__restrict __buf, size_t __buflen,
struct netent **__restrict __result,
int *__restrict __h_errnop);
extern int getnetbyname_r (__const char *__restrict __name,
struct netent *__restrict __result_buf,
char *__restrict __buf, size_t __buflen,
struct netent **__restrict __result,
int *__restrict __h_errnop);
struct servent
{
char *s_name;
char **s_aliases;
int s_port;
char *s_proto;
};
extern void setservent (int __stay_open);
extern void endservent (void);
extern struct servent *getservent (void);
extern struct servent *getservbyname (__const char *__name,
__const char *__proto);
extern struct servent *getservbyport (int __port, __const char *__proto);
# 303 "/usr/include/netdb.h" 3 4
extern int getservent_r (struct servent *__restrict __result_buf,
char *__restrict __buf, size_t __buflen,
struct servent **__restrict __result);
extern int getservbyname_r (__const char *__restrict __name,
__const char *__restrict __proto,
struct servent *__restrict __result_buf,
char *__restrict __buf, size_t __buflen,
struct servent **__restrict __result);
extern int getservbyport_r (int __port, __const char *__restrict __proto,
struct servent *__restrict __result_buf,
char *__restrict __buf, size_t __buflen,
struct servent **__restrict __result);
struct protoent
{
char *p_name;
char **p_aliases;
int p_proto;
};
extern void setprotoent (int __stay_open);
extern void endprotoent (void);
extern struct protoent *getprotoent (void);
extern struct protoent *getprotobyname (__const char *__name);
extern struct protoent *getprotobynumber (int __proto);
# 369 "/usr/include/netdb.h" 3 4
extern int getprotoent_r (struct protoent *__restrict __result_buf,
char *__restrict __buf, size_t __buflen,
struct protoent **__restrict __result);
extern int getprotobyname_r (__const char *__restrict __name,
struct protoent *__restrict __result_buf,
char *__restrict __buf, size_t __buflen,
struct protoent **__restrict __result);
extern int getprotobynumber_r (int __proto,
struct protoent *__restrict __result_buf,
char *__restrict __buf, size_t __buflen,
struct protoent **__restrict __result);
# 390 "/usr/include/netdb.h" 3 4
extern int setnetgrent (__const char *__netgroup);
extern void endnetgrent (void);
# 407 "/usr/include/netdb.h" 3 4
extern int getnetgrent (char **__restrict __hostp,
char **__restrict __userp,
char **__restrict __domainp);
# 418 "/usr/include/netdb.h" 3 4
extern int innetgr (__const char *__netgroup, __const char *__host,
__const char *__user, __const char *domain);
extern int getnetgrent_r (char **__restrict __hostp,
char **__restrict __userp,
char **__restrict __domainp,
char *__restrict __buffer, size_t __buflen);
# 446 "/usr/include/netdb.h" 3 4
extern int rcmd (char **__restrict __ahost, unsigned short int __rport,
__const char *__restrict __locuser,
__const char *__restrict __remuser,
__const char *__restrict __cmd, int *__restrict __fd2p);
# 458 "/usr/include/netdb.h" 3 4
extern int rcmd_af (char **__restrict __ahost, unsigned short int __rport,
__const char *__restrict __locuser,
__const char *__restrict __remuser,
__const char *__restrict __cmd, int *__restrict __fd2p,
sa_family_t __af);
# 474 "/usr/include/netdb.h" 3 4
extern int rexec (char **__restrict __ahost, int __rport,
__const char *__restrict __name,
__const char *__restrict __pass,
__const char *__restrict __cmd, int *__restrict __fd2p);
# 486 "/usr/include/netdb.h" 3 4
extern int rexec_af (char **__restrict __ahost, int __rport,
__const char *__restrict __name,
__const char *__restrict __pass,
__const char *__restrict __cmd, int *__restrict __fd2p,
sa_family_t __af);
# 500 "/usr/include/netdb.h" 3 4
extern int ruserok (__const char *__rhost, int __suser,
__const char *__remuser, __const char *__locuser);
# 510 "/usr/include/netdb.h" 3 4
extern int ruserok_af (__const char *__rhost, int __suser,
__const char *__remuser, __const char *__locuser,
sa_family_t __af);
# 522 "/usr/include/netdb.h" 3 4
extern int rresvport (int *__alport);
# 531 "/usr/include/netdb.h" 3 4
extern int rresvport_af (int *__alport, sa_family_t __af);
struct addrinfo
{
int ai_flags;
int ai_family;
int ai_socktype;
int ai_protocol;
socklen_t ai_addrlen;
struct sockaddr *ai_addr;
char *ai_canonname;
struct addrinfo *ai_next;
};
# 631 "/usr/include/netdb.h" 3 4
extern int getaddrinfo (__const char *__restrict __name,
__const char *__restrict __service,
__const struct addrinfo *__restrict __req,
struct addrinfo **__restrict __pai);
extern void freeaddrinfo (struct addrinfo *__ai) __attribute__ ((__nothrow__));
extern __const char *gai_strerror (int __ecode) __attribute__ ((__nothrow__));
extern int getnameinfo (__const struct sockaddr *__restrict __sa,
socklen_t __salen, char *__restrict __host,
socklen_t __hostlen, char *__restrict __serv,
socklen_t __servlen, unsigned int __flags);
# 682 "/usr/include/netdb.h" 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_NETDB_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: Direct.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Possible ERROR while running preprocessor: /tmp/petsc-5zlcDX/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directory
compilation terminated.
ret = 256
error message = {/tmp/petsc-5zlcDX/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directory
compilation terminated.
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <Direct.h>
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: time.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/time.h" 1 3 4
# 29 "/usr/include/time.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 30 "/usr/include/time.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 40 "/usr/include/time.h" 2 3 4
# 1 "/usr/include/bits/time.h" 1 3 4
# 44 "/usr/include/time.h" 2 3 4
# 57 "/usr/include/time.h" 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 58 "/usr/include/time.h" 2 3 4
typedef __clock_t clock_t;
# 75 "/usr/include/time.h" 3 4
typedef __time_t time_t;
# 93 "/usr/include/time.h" 3 4
typedef __clockid_t clockid_t;
# 105 "/usr/include/time.h" 3 4
typedef __timer_t timer_t;
# 121 "/usr/include/time.h" 3 4
struct timespec
{
__time_t tv_sec;
long int tv_nsec;
};
struct tm
{
int tm_sec;
int tm_min;
int tm_hour;
int tm_mday;
int tm_mon;
int tm_year;
int tm_wday;
int tm_yday;
int tm_isdst;
long int tm_gmtoff;
__const char *tm_zone;
};
struct itimerspec
{
struct timespec it_interval;
struct timespec it_value;
};
struct sigevent;
typedef __pid_t pid_t;
extern clock_t clock (void) __attribute__ ((__nothrow__));
extern time_t time (time_t *__timer) __attribute__ ((__nothrow__));
extern double difftime (time_t __time1, time_t __time0)
__attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__));
extern size_t strftime (char *__restrict __s, size_t __maxsize,
__const char *__restrict __format,
__const struct tm *__restrict __tp) __attribute__ ((__nothrow__));
# 229 "/usr/include/time.h" 3 4
extern struct tm *gmtime (__const time_t *__timer) __attribute__ ((__nothrow__));
extern struct tm *localtime (__const time_t *__timer) __attribute__ ((__nothrow__));
extern struct tm *gmtime_r (__const time_t *__restrict __timer,
struct tm *__restrict __tp) __attribute__ ((__nothrow__));
extern struct tm *localtime_r (__const time_t *__restrict __timer,
struct tm *__restrict __tp) __attribute__ ((__nothrow__));
extern char *asctime (__const struct tm *__tp) __attribute__ ((__nothrow__));
extern char *ctime (__const time_t *__timer) __attribute__ ((__nothrow__));
extern char *asctime_r (__const struct tm *__restrict __tp,
char *__restrict __buf) __attribute__ ((__nothrow__));
extern char *ctime_r (__const time_t *__restrict __timer,
char *__restrict __buf) __attribute__ ((__nothrow__));
extern char *__tzname[2];
extern int __daylight;
extern long int __timezone;
extern char *tzname[2];
extern void tzset (void) __attribute__ ((__nothrow__));
extern int daylight;
extern long int timezone;
extern int stime (__const time_t *__when) __attribute__ ((__nothrow__));
# 312 "/usr/include/time.h" 3 4
extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__));
extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__));
extern int dysize (int __year) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
# 327 "/usr/include/time.h" 3 4
extern int nanosleep (__const struct timespec *__requested_time,
struct timespec *__remaining);
extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__));
extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__));
extern int clock_settime (clockid_t __clock_id, __const struct timespec *__tp)
__attribute__ ((__nothrow__));
extern int clock_nanosleep (clockid_t __clock_id, int __flags,
__const struct timespec *__req,
struct timespec *__rem);
extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__));
extern int timer_create (clockid_t __clock_id,
struct sigevent *__restrict __evp,
timer_t *__restrict __timerid) __attribute__ ((__nothrow__));
extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__));
extern int timer_settime (timer_t __timerid, int __flags,
__const struct itimerspec *__restrict __value,
struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__));
extern int timer_gettime (timer_t __timerid, struct itimerspec *__value)
__attribute__ ((__nothrow__));
extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__));
# 416 "/usr/include/time.h" 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_TIME_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: Ws2tcpip.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Possible ERROR while running preprocessor: /tmp/petsc-5zlcDX/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory
compilation terminated.
ret = 256
error message = {/tmp/petsc-5zlcDX/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory
compilation terminated.
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <Ws2tcpip.h>
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/types.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/sys/types.h" 1 3 4
# 27 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 28 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 32 "/usr/include/sys/types.h" 2 3 4
typedef __u_char u_char;
typedef __u_short u_short;
typedef __u_int u_int;
typedef __u_long u_long;
typedef __quad_t quad_t;
typedef __u_quad_t u_quad_t;
typedef __fsid_t fsid_t;
typedef __loff_t loff_t;
typedef __ino_t ino_t;
# 62 "/usr/include/sys/types.h" 3 4
typedef __dev_t dev_t;
typedef __gid_t gid_t;
typedef __mode_t mode_t;
typedef __nlink_t nlink_t;
typedef __uid_t uid_t;
typedef __off_t off_t;
# 100 "/usr/include/sys/types.h" 3 4
typedef __pid_t pid_t;
typedef __id_t id_t;
typedef __ssize_t ssize_t;
typedef __daddr_t daddr_t;
typedef __caddr_t caddr_t;
typedef __key_t key_t;
# 133 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/time.h" 1 3 4
# 75 "/usr/include/time.h" 3 4
typedef __time_t time_t;
# 93 "/usr/include/time.h" 3 4
typedef __clockid_t clockid_t;
# 105 "/usr/include/time.h" 3 4
typedef __timer_t timer_t;
# 134 "/usr/include/sys/types.h" 2 3 4
# 147 "/usr/include/sys/types.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 148 "/usr/include/sys/types.h" 2 3 4
typedef unsigned long int ulong;
typedef unsigned short int ushort;
typedef unsigned int uint;
# 195 "/usr/include/sys/types.h" 3 4
typedef int int8_t __attribute__ ((__mode__ (__QI__)));
typedef int int16_t __attribute__ ((__mode__ (__HI__)));
typedef int int32_t __attribute__ ((__mode__ (__SI__)));
typedef int int64_t __attribute__ ((__mode__ (__DI__)));
typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__)));
typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__)));
typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__)));
typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__)));
typedef int register_t __attribute__ ((__mode__ (__word__)));
# 217 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/endian.h" 1 3 4
# 37 "/usr/include/endian.h" 3 4
# 1 "/usr/include/bits/endian.h" 1 3 4
# 38 "/usr/include/endian.h" 2 3 4
# 218 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/select.h" 1 3 4
# 31 "/usr/include/sys/select.h" 3 4
# 1 "/usr/include/bits/select.h" 1 3 4
# 32 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/sigset.h" 1 3 4
# 24 "/usr/include/bits/sigset.h" 3 4
typedef int __sig_atomic_t;
typedef struct
{
unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))];
} __sigset_t;
# 35 "/usr/include/sys/select.h" 2 3 4
typedef __sigset_t sigset_t;
# 1 "/usr/include/time.h" 1 3 4
# 121 "/usr/include/time.h" 3 4
struct timespec
{
__time_t tv_sec;
long int tv_nsec;
};
# 45 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/time.h" 1 3 4
# 69 "/usr/include/bits/time.h" 3 4
struct timeval
{
__time_t tv_sec;
__suseconds_t tv_usec;
};
# 47 "/usr/include/sys/select.h" 2 3 4
typedef __suseconds_t suseconds_t;
typedef long int __fd_mask;
# 67 "/usr/include/sys/select.h" 3 4
typedef struct
{
__fd_mask __fds_bits[1024 / (8 * sizeof (__fd_mask))];
} fd_set;
typedef __fd_mask fd_mask;
# 99 "/usr/include/sys/select.h" 3 4
# 109 "/usr/include/sys/select.h" 3 4
extern int select (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
struct timeval *__restrict __timeout);
# 121 "/usr/include/sys/select.h" 3 4
extern int pselect (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
const struct timespec *__restrict __timeout,
const __sigset_t *__restrict __sigmask);
# 221 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/sysmacros.h" 1 3 4
# 30 "/usr/include/sys/sysmacros.h" 3 4
__extension__
extern unsigned int gnu_dev_major (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned int gnu_dev_minor (unsigned long long int __dev)
__attribute__ ((__nothrow__));
__extension__
extern unsigned long long int gnu_dev_makedev (unsigned int __major,
unsigned int __minor)
__attribute__ ((__nothrow__));
# 224 "/usr/include/sys/types.h" 2 3 4
# 235 "/usr/include/sys/types.h" 3 4
typedef __blkcnt_t blkcnt_t;
typedef __fsblkcnt_t fsblkcnt_t;
typedef __fsfilcnt_t fsfilcnt_t;
# 270 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/bits/pthreadtypes.h" 1 3 4
# 23 "/usr/include/bits/pthreadtypes.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 24 "/usr/include/bits/pthreadtypes.h" 2 3 4
# 50 "/usr/include/bits/pthreadtypes.h" 3 4
typedef unsigned long int pthread_t;
typedef union
{
char __size[36];
long int __align;
} pthread_attr_t;
# 67 "/usr/include/bits/pthreadtypes.h" 3 4
typedef struct __pthread_internal_slist
{
struct __pthread_internal_slist *__next;
} __pthread_slist_t;
typedef union
{
struct __pthread_mutex_s
{
int __lock;
unsigned int __count;
int __owner;
int __kind;
unsigned int __nusers;
__extension__ union
{
int __spins;
__pthread_slist_t __list;
};
} __data;
char __size[24];
long int __align;
} pthread_mutex_t;
typedef union
{
char __size[4];
int __align;
} pthread_mutexattr_t;
typedef union
{
struct
{
int __lock;
unsigned int __futex;
__extension__ unsigned long long int __total_seq;
__extension__ unsigned long long int __wakeup_seq;
__extension__ unsigned long long int __woken_seq;
void *__mutex;
unsigned int __nwaiters;
unsigned int __broadcast_seq;
} __data;
char __size[48];
__extension__ long long int __align;
} pthread_cond_t;
typedef union
{
char __size[4];
int __align;
} pthread_condattr_t;
typedef unsigned int pthread_key_t;
typedef int pthread_once_t;
typedef union
{
# 170 "/usr/include/bits/pthreadtypes.h" 3 4
struct
{
int __lock;
unsigned int __nr_readers;
unsigned int __readers_wakeup;
unsigned int __writer_wakeup;
unsigned int __nr_readers_queued;
unsigned int __nr_writers_queued;
unsigned char __flags;
unsigned char __shared;
unsigned char __pad1;
unsigned char __pad2;
int __writer;
} __data;
char __size[32];
long int __align;
} pthread_rwlock_t;
typedef union
{
char __size[8];
long int __align;
} pthread_rwlockattr_t;
typedef volatile int pthread_spinlock_t;
typedef union
{
char __size[20];
long int __align;
} pthread_barrier_t;
typedef union
{
char __size[4];
int __align;
} pthread_barrierattr_t;
# 271 "/usr/include/sys/types.h" 2 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_SYS_TYPES_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: WindowsX.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Possible ERROR while running preprocessor: /tmp/petsc-5zlcDX/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory
compilation terminated.
ret = 256
error message = {/tmp/petsc-5zlcDX/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory
compilation terminated.
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <WindowsX.h>
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: cxxabi.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Possible ERROR while running preprocessor: /tmp/petsc-5zlcDX/config.headers/conftest.c:3:20: fatal error: cxxabi.h: No such file or directory
compilation terminated.
ret = 256
error message = {/tmp/petsc-5zlcDX/config.headers/conftest.c:3:20: fatal error: cxxabi.h: No such file or directory
compilation terminated.
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <cxxabi.h>
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: float.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/float.h" 1 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_FLOAT_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: ieeefp.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Possible ERROR while running preprocessor: /tmp/petsc-5zlcDX/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory
compilation terminated.
ret = 256
error message = {/tmp/petsc-5zlcDX/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory
compilation terminated.
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <ieeefp.h>
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: stdint.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stdint.h" 1 3 4
# 1 "/usr/include/stdint.h" 1 3 4
# 26 "/usr/include/stdint.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 27 "/usr/include/stdint.h" 2 3 4
# 1 "/usr/include/bits/wchar.h" 1 3 4
# 28 "/usr/include/stdint.h" 2 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/stdint.h" 2 3 4
# 37 "/usr/include/stdint.h" 3 4
typedef signed char int8_t;
typedef short int int16_t;
typedef int int32_t;
__extension__
typedef long long int int64_t;
typedef unsigned char uint8_t;
typedef unsigned short int uint16_t;
typedef unsigned int uint32_t;
__extension__
typedef unsigned long long int uint64_t;
typedef signed char int_least8_t;
typedef short int int_least16_t;
typedef int int_least32_t;
__extension__
typedef long long int int_least64_t;
typedef unsigned char uint_least8_t;
typedef unsigned short int uint_least16_t;
typedef unsigned int uint_least32_t;
__extension__
typedef unsigned long long int uint_least64_t;
typedef signed char int_fast8_t;
typedef int int_fast16_t;
typedef int int_fast32_t;
__extension__
typedef long long int int_fast64_t;
typedef unsigned char uint_fast8_t;
typedef unsigned int uint_fast16_t;
typedef unsigned int uint_fast32_t;
__extension__
typedef unsigned long long int uint_fast64_t;
# 126 "/usr/include/stdint.h" 3 4
typedef int intptr_t;
typedef unsigned int uintptr_t;
# 138 "/usr/include/stdint.h" 3 4
__extension__
typedef long long int intmax_t;
__extension__
typedef unsigned long long int uintmax_t;
# 4 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stdint.h" 2 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_STDINT_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: fenv.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/fenv.h" 1 3 4
# 26 "/usr/include/fenv.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 27 "/usr/include/fenv.h" 2 3 4
# 58 "/usr/include/fenv.h" 3 4
# 1 "/usr/include/bits/fenv.h" 1 3 4
# 23 "/usr/include/bits/fenv.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 24 "/usr/include/bits/fenv.h" 2 3 4
enum
{
FE_INVALID = 0x01,
__FE_DENORM = 0x02,
FE_DIVBYZERO = 0x04,
FE_OVERFLOW = 0x08,
FE_UNDERFLOW = 0x10,
FE_INEXACT = 0x20
};
enum
{
FE_TONEAREST = 0,
FE_DOWNWARD = 0x400,
FE_UPWARD = 0x800,
FE_TOWARDZERO = 0xc00
};
typedef unsigned short int fexcept_t;
typedef struct
{
unsigned short int __control_word;
unsigned short int __unused1;
unsigned short int __status_word;
unsigned short int __unused2;
unsigned short int __tags;
unsigned short int __unused3;
unsigned int __eip;
unsigned short int __cs_selector;
unsigned int __opcode:11;
unsigned int __unused4:5;
unsigned int __data_offset;
unsigned short int __data_selector;
unsigned short int __unused5;
}
fenv_t;
# 59 "/usr/include/fenv.h" 2 3 4
extern int feclearexcept (int __excepts) __attribute__ ((__nothrow__));
extern int fegetexceptflag (fexcept_t *__flagp, int __excepts) __attribute__ ((__nothrow__));
extern int feraiseexcept (int __excepts) __attribute__ ((__nothrow__));
extern int fesetexceptflag (__const fexcept_t *__flagp, int __excepts) __attribute__ ((__nothrow__));
extern int fetestexcept (int __excepts) __attribute__ ((__nothrow__));
extern int fegetround (void) __attribute__ ((__nothrow__));
extern int fesetround (int __rounding_direction) __attribute__ ((__nothrow__));
extern int fegetenv (fenv_t *__envp) __attribute__ ((__nothrow__));
extern int feholdexcept (fenv_t *__envp) __attribute__ ((__nothrow__));
extern int fesetenv (__const fenv_t *__envp) __attribute__ ((__nothrow__));
extern int feupdateenv (__const fenv_t *__envp) __attribute__ ((__nothrow__));
# 134 "/usr/include/fenv.h" 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_FENV_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: sched.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/sched.h" 1 3 4
# 23 "/usr/include/sched.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 24 "/usr/include/sched.h" 2 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 27 "/usr/include/sched.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 30 "/usr/include/sched.h" 2 3 4
# 1 "/usr/include/time.h" 1 3 4
# 121 "/usr/include/time.h" 3 4
struct timespec
{
__time_t tv_sec;
long int tv_nsec;
};
# 33 "/usr/include/sched.h" 2 3 4
# 1 "/usr/include/bits/sched.h" 1 3 4
# 66 "/usr/include/bits/sched.h" 3 4
struct sched_param
{
int __sched_priority;
};
extern int clone (int (*__fn) (void *__arg), void *__child_stack,
int __flags, void *__arg, ...) __attribute__ ((__nothrow__));
extern int unshare (int __flags) __attribute__ ((__nothrow__));
extern int sched_getcpu (void) __attribute__ ((__nothrow__));
struct __sched_param
{
int __sched_priority;
};
# 108 "/usr/include/bits/sched.h" 3 4
typedef unsigned long int __cpu_mask;
typedef struct
{
__cpu_mask __bits[1024 / (8 * sizeof (__cpu_mask))];
} cpu_set_t;
# 186 "/usr/include/bits/sched.h" 3 4
extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp)
__attribute__ ((__nothrow__));
extern cpu_set_t *__sched_cpualloc (size_t __count) __attribute__ ((__nothrow__)) ;
extern void __sched_cpufree (cpu_set_t *__set) __attribute__ ((__nothrow__));
# 36 "/usr/include/sched.h" 2 3 4
extern int sched_setparam (__pid_t __pid, __const struct sched_param *__param)
__attribute__ ((__nothrow__));
extern int sched_getparam (__pid_t __pid, struct sched_param *__param) __attribute__ ((__nothrow__));
extern int sched_setscheduler (__pid_t __pid, int __policy,
__const struct sched_param *__param) __attribute__ ((__nothrow__));
extern int sched_getscheduler (__pid_t __pid) __attribute__ ((__nothrow__));
extern int sched_yield (void) __attribute__ ((__nothrow__));
extern int sched_get_priority_max (int __algorithm) __attribute__ ((__nothrow__));
extern int sched_get_priority_min (int __algorithm) __attribute__ ((__nothrow__));
extern int sched_rr_get_interval (__pid_t __pid, struct timespec *__t) __attribute__ ((__nothrow__));
# 118 "/usr/include/sched.h" 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_SCHED_H" to "1"
================================================================================
TEST check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:77)
Checks for "header", and defines HAVE_"header" if found
Checking for header: pthread.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/pthread.h" 1 3 4
# 23 "/usr/include/pthread.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 24 "/usr/include/pthread.h" 2 3 4
# 1 "/usr/include/endian.h" 1 3 4
# 37 "/usr/include/endian.h" 3 4
# 1 "/usr/include/bits/endian.h" 1 3 4
# 38 "/usr/include/endian.h" 2 3 4
# 25 "/usr/include/pthread.h" 2 3 4
# 1 "/usr/include/sched.h" 1 3 4
# 26 "/usr/include/sched.h" 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 27 "/usr/include/sched.h" 2 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 30 "/usr/include/sched.h" 2 3 4
# 1 "/usr/include/time.h" 1 3 4
# 121 "/usr/include/time.h" 3 4
struct timespec
{
__time_t tv_sec;
long int tv_nsec;
};
# 33 "/usr/include/sched.h" 2 3 4
# 1 "/usr/include/bits/sched.h" 1 3 4
# 66 "/usr/include/bits/sched.h" 3 4
struct sched_param
{
int __sched_priority;
};
extern int clone (int (*__fn) (void *__arg), void *__child_stack,
int __flags, void *__arg, ...) __attribute__ ((__nothrow__));
extern int unshare (int __flags) __attribute__ ((__nothrow__));
extern int sched_getcpu (void) __attribute__ ((__nothrow__));
struct __sched_param
{
int __sched_priority;
};
# 108 "/usr/include/bits/sched.h" 3 4
typedef unsigned long int __cpu_mask;
typedef struct
{
__cpu_mask __bits[1024 / (8 * sizeof (__cpu_mask))];
} cpu_set_t;
# 186 "/usr/include/bits/sched.h" 3 4
extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp)
__attribute__ ((__nothrow__));
extern cpu_set_t *__sched_cpualloc (size_t __count) __attribute__ ((__nothrow__)) ;
extern void __sched_cpufree (cpu_set_t *__set) __attribute__ ((__nothrow__));
# 36 "/usr/include/sched.h" 2 3 4
extern int sched_setparam (__pid_t __pid, __const struct sched_param *__param)
__attribute__ ((__nothrow__));
extern int sched_getparam (__pid_t __pid, struct sched_param *__param) __attribute__ ((__nothrow__));
extern int sched_setscheduler (__pid_t __pid, int __policy,
__const struct sched_param *__param) __attribute__ ((__nothrow__));
extern int sched_getscheduler (__pid_t __pid) __attribute__ ((__nothrow__));
extern int sched_yield (void) __attribute__ ((__nothrow__));
extern int sched_get_priority_max (int __algorithm) __attribute__ ((__nothrow__));
extern int sched_get_priority_min (int __algorithm) __attribute__ ((__nothrow__));
extern int sched_rr_get_interval (__pid_t __pid, struct timespec *__t) __attribute__ ((__nothrow__));
# 118 "/usr/include/sched.h" 3 4
# 26 "/usr/include/pthread.h" 2 3 4
# 1 "/usr/include/time.h" 1 3 4
# 31 "/usr/include/time.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 40 "/usr/include/time.h" 2 3 4
# 1 "/usr/include/bits/time.h" 1 3 4
# 44 "/usr/include/time.h" 2 3 4
# 59 "/usr/include/time.h" 3 4
typedef __clock_t clock_t;
# 75 "/usr/include/time.h" 3 4
typedef __time_t time_t;
# 93 "/usr/include/time.h" 3 4
typedef __clockid_t clockid_t;
# 105 "/usr/include/time.h" 3 4
typedef __timer_t timer_t;
# 132 "/usr/include/time.h" 3 4
struct tm
{
int tm_sec;
int tm_min;
int tm_hour;
int tm_mday;
int tm_mon;
int tm_year;
int tm_wday;
int tm_yday;
int tm_isdst;
long int tm_gmtoff;
__const char *tm_zone;
};
struct itimerspec
{
struct timespec it_interval;
struct timespec it_value;
};
struct sigevent;
typedef __pid_t pid_t;
extern clock_t clock (void) __attribute__ ((__nothrow__));
extern time_t time (time_t *__timer) __attribute__ ((__nothrow__));
extern double difftime (time_t __time1, time_t __time0)
__attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__));
extern size_t strftime (char *__restrict __s, size_t __maxsize,
__const char *__restrict __format,
__const struct tm *__restrict __tp) __attribute__ ((__nothrow__));
# 229 "/usr/include/time.h" 3 4
extern struct tm *gmtime (__const time_t *__timer) __attribute__ ((__nothrow__));
extern struct tm *localtime (__const time_t *__timer) __attribute__ ((__nothrow__));
extern struct tm *gmtime_r (__const time_t *__restrict __timer,
struct tm *__restrict __tp) __attribute__ ((__nothrow__));
extern struct tm *localtime_r (__const time_t *__restrict __timer,
struct tm *__restrict __tp) __attribute__ ((__nothrow__));
extern char *asctime (__const struct tm *__tp) __attribute__ ((__nothrow__));
extern char *ctime (__const time_t *__timer) __attribute__ ((__nothrow__));
extern char *asctime_r (__const struct tm *__restrict __tp,
char *__restrict __buf) __attribute__ ((__nothrow__));
extern char *ctime_r (__const time_t *__restrict __timer,
char *__restrict __buf) __attribute__ ((__nothrow__));
extern char *__tzname[2];
extern int __daylight;
extern long int __timezone;
extern char *tzname[2];
extern void tzset (void) __attribute__ ((__nothrow__));
extern int daylight;
extern long int timezone;
extern int stime (__const time_t *__when) __attribute__ ((__nothrow__));
# 312 "/usr/include/time.h" 3 4
extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__));
extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__));
extern int dysize (int __year) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
# 327 "/usr/include/time.h" 3 4
extern int nanosleep (__const struct timespec *__requested_time,
struct timespec *__remaining);
extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__));
extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__));
extern int clock_settime (clockid_t __clock_id, __const struct timespec *__tp)
__attribute__ ((__nothrow__));
extern int clock_nanosleep (clockid_t __clock_id, int __flags,
__const struct timespec *__req,
struct timespec *__rem);
extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__));
extern int timer_create (clockid_t __clock_id,
struct sigevent *__restrict __evp,
timer_t *__restrict __timerid) __attribute__ ((__nothrow__));
extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__));
extern int timer_settime (timer_t __timerid, int __flags,
__const struct itimerspec *__restrict __value,
struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__));
extern int timer_gettime (timer_t __timerid, struct itimerspec *__value)
__attribute__ ((__nothrow__));
extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__));
# 416 "/usr/include/time.h" 3 4
# 27 "/usr/include/pthread.h" 2 3 4
# 1 "/usr/include/signal.h" 1 3 4
# 31 "/usr/include/signal.h" 3 4
# 1 "/usr/include/bits/sigset.h" 1 3 4
# 24 "/usr/include/bits/sigset.h" 3 4
typedef int __sig_atomic_t;
typedef struct
{
unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))];
} __sigset_t;
# 34 "/usr/include/signal.h" 2 3 4
# 50 "/usr/include/signal.h" 3 4
typedef __sigset_t sigset_t;
# 402 "/usr/include/signal.h" 3 4
# 30 "/usr/include/pthread.h" 2 3 4
# 1 "/usr/include/bits/pthreadtypes.h" 1 3 4
# 23 "/usr/include/bits/pthreadtypes.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 24 "/usr/include/bits/pthreadtypes.h" 2 3 4
# 50 "/usr/include/bits/pthreadtypes.h" 3 4
typedef unsigned long int pthread_t;
typedef union
{
char __size[36];
long int __align;
} pthread_attr_t;
# 67 "/usr/include/bits/pthreadtypes.h" 3 4
typedef struct __pthread_internal_slist
{
struct __pthread_internal_slist *__next;
} __pthread_slist_t;
typedef union
{
struct __pthread_mutex_s
{
int __lock;
unsigned int __count;
int __owner;
int __kind;
unsigned int __nusers;
__extension__ union
{
int __spins;
__pthread_slist_t __list;
};
} __data;
char __size[24];
long int __align;
} pthread_mutex_t;
typedef union
{
char __size[4];
int __align;
} pthread_mutexattr_t;
typedef union
{
struct
{
int __lock;
unsigned int __futex;
__extension__ unsigned long long int __total_seq;
__extension__ unsigned long long int __wakeup_seq;
__extension__ unsigned long long int __woken_seq;
void *__mutex;
unsigned int __nwaiters;
unsigned int __broadcast_seq;
} __data;
char __size[48];
__extension__ long long int __align;
} pthread_cond_t;
typedef union
{
char __size[4];
int __align;
} pthread_condattr_t;
typedef unsigned int pthread_key_t;
typedef int pthread_once_t;
typedef union
{
# 170 "/usr/include/bits/pthreadtypes.h" 3 4
struct
{
int __lock;
unsigned int __nr_readers;
unsigned int __readers_wakeup;
unsigned int __writer_wakeup;
unsigned int __nr_readers_queued;
unsigned int __nr_writers_queued;
unsigned char __flags;
unsigned char __shared;
unsigned char __pad1;
unsigned char __pad2;
int __writer;
} __data;
char __size[32];
long int __align;
} pthread_rwlock_t;
typedef union
{
char __size[8];
long int __align;
} pthread_rwlockattr_t;
typedef volatile int pthread_spinlock_t;
typedef union
{
char __size[20];
long int __align;
} pthread_barrier_t;
typedef union
{
char __size[4];
int __align;
} pthread_barrierattr_t;
# 31 "/usr/include/pthread.h" 2 3 4
# 1 "/usr/include/bits/setjmp.h" 1 3 4
# 27 "/usr/include/bits/setjmp.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 28 "/usr/include/bits/setjmp.h" 2 3 4
typedef int __jmp_buf[6];
# 32 "/usr/include/pthread.h" 2 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 33 "/usr/include/pthread.h" 2 3 4
enum
{
PTHREAD_CREATE_JOINABLE,
PTHREAD_CREATE_DETACHED
};
enum
{
PTHREAD_MUTEX_TIMED_NP,
PTHREAD_MUTEX_RECURSIVE_NP,
PTHREAD_MUTEX_ERRORCHECK_NP,
PTHREAD_MUTEX_ADAPTIVE_NP
# 63 "/usr/include/pthread.h" 3 4
};
# 115 "/usr/include/pthread.h" 3 4
enum
{
PTHREAD_RWLOCK_PREFER_READER_NP,
PTHREAD_RWLOCK_PREFER_WRITER_NP,
PTHREAD_RWLOCK_PREFER_WRITER_NONRECURSIVE_NP,
PTHREAD_RWLOCK_DEFAULT_NP = PTHREAD_RWLOCK_PREFER_READER_NP
};
# 147 "/usr/include/pthread.h" 3 4
enum
{
PTHREAD_INHERIT_SCHED,
PTHREAD_EXPLICIT_SCHED
};
enum
{
PTHREAD_SCOPE_SYSTEM,
PTHREAD_SCOPE_PROCESS
};
enum
{
PTHREAD_PROCESS_PRIVATE,
PTHREAD_PROCESS_SHARED
};
# 182 "/usr/include/pthread.h" 3 4
struct _pthread_cleanup_buffer
{
void (*__routine) (void *);
void *__arg;
int __canceltype;
struct _pthread_cleanup_buffer *__prev;
};
enum
{
PTHREAD_CANCEL_ENABLE,
PTHREAD_CANCEL_DISABLE
};
enum
{
PTHREAD_CANCEL_DEFERRED,
PTHREAD_CANCEL_ASYNCHRONOUS
};
# 220 "/usr/include/pthread.h" 3 4
extern int pthread_create (pthread_t *__restrict __newthread,
__const pthread_attr_t *__restrict __attr,
void *(*__start_routine) (void *),
void *__restrict __arg) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 3)));
extern void pthread_exit (void *__retval) __attribute__ ((__noreturn__));
extern int pthread_join (pthread_t __th, void **__thread_return);
# 263 "/usr/include/pthread.h" 3 4
extern int pthread_detach (pthread_t __th) __attribute__ ((__nothrow__));
extern pthread_t pthread_self (void) __attribute__ ((__nothrow__)) __attribute__ ((__const__));
extern int pthread_equal (pthread_t __thread1, pthread_t __thread2) __attribute__ ((__nothrow__));
extern int pthread_attr_init (pthread_attr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_attr_destroy (pthread_attr_t *__attr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_attr_getdetachstate (__const pthread_attr_t *__attr,
int *__detachstate)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_attr_setdetachstate (pthread_attr_t *__attr,
int __detachstate)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_attr_getguardsize (__const pthread_attr_t *__attr,
size_t *__guardsize)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_attr_setguardsize (pthread_attr_t *__attr,
size_t __guardsize)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_attr_getschedparam (__const pthread_attr_t *__restrict
__attr,
struct sched_param *__restrict __param)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_attr_setschedparam (pthread_attr_t *__restrict __attr,
__const struct sched_param *__restrict
__param) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_attr_getschedpolicy (__const pthread_attr_t *__restrict
__attr, int *__restrict __policy)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_attr_setschedpolicy (pthread_attr_t *__attr, int __policy)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_attr_getinheritsched (__const pthread_attr_t *__restrict
__attr, int *__restrict __inherit)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_attr_setinheritsched (pthread_attr_t *__attr,
int __inherit)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_attr_getscope (__const pthread_attr_t *__restrict __attr,
int *__restrict __scope)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_attr_setscope (pthread_attr_t *__attr, int __scope)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_attr_getstackaddr (__const pthread_attr_t *__restrict
__attr, void **__restrict __stackaddr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))) __attribute__ ((__deprecated__));
extern int pthread_attr_setstackaddr (pthread_attr_t *__attr,
void *__stackaddr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__));
extern int pthread_attr_getstacksize (__const pthread_attr_t *__restrict
__attr, size_t *__restrict __stacksize)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_attr_setstacksize (pthread_attr_t *__attr,
size_t __stacksize)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_attr_getstack (__const pthread_attr_t *__restrict __attr,
void **__restrict __stackaddr,
size_t *__restrict __stacksize)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2, 3)));
extern int pthread_attr_setstack (pthread_attr_t *__attr, void *__stackaddr,
size_t __stacksize) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 413 "/usr/include/pthread.h" 3 4
extern int pthread_setschedparam (pthread_t __target_thread, int __policy,
__const struct sched_param *__param)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3)));
extern int pthread_getschedparam (pthread_t __target_thread,
int *__restrict __policy,
struct sched_param *__restrict __param)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3)));
extern int pthread_setschedprio (pthread_t __target_thread, int __prio)
__attribute__ ((__nothrow__));
# 466 "/usr/include/pthread.h" 3 4
extern int pthread_once (pthread_once_t *__once_control,
void (*__init_routine) (void)) __attribute__ ((__nonnull__ (1, 2)));
# 478 "/usr/include/pthread.h" 3 4
extern int pthread_setcancelstate (int __state, int *__oldstate);
extern int pthread_setcanceltype (int __type, int *__oldtype);
extern int pthread_cancel (pthread_t __th);
extern void pthread_testcancel (void);
typedef struct
{
struct
{
__jmp_buf __cancel_jmp_buf;
int __mask_was_saved;
} __cancel_jmp_buf[1];
void *__pad[4];
} __pthread_unwind_buf_t __attribute__ ((__aligned__));
# 512 "/usr/include/pthread.h" 3 4
struct __pthread_cleanup_frame
{
void (*__cancel_routine) (void *);
void *__cancel_arg;
int __do_it;
int __cancel_type;
};
# 652 "/usr/include/pthread.h" 3 4
extern void __pthread_register_cancel (__pthread_unwind_buf_t *__buf)
__attribute__ ((__regparm__ (1)));
# 663 "/usr/include/pthread.h" 3 4
extern void __pthread_unregister_cancel (__pthread_unwind_buf_t *__buf)
__attribute__ ((__regparm__ (1)));
# 703 "/usr/include/pthread.h" 3 4
extern void __pthread_unwind_next (__pthread_unwind_buf_t *__buf)
__attribute__ ((__regparm__ (1))) __attribute__ ((__noreturn__))
__attribute__ ((__weak__))
;
struct __jmp_buf_tag;
extern int __sigsetjmp (struct __jmp_buf_tag *__env, int __savemask) __attribute__ ((__nothrow__));
extern int pthread_mutex_init (pthread_mutex_t *__mutex,
__const pthread_mutexattr_t *__mutexattr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_mutex_destroy (pthread_mutex_t *__mutex)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_mutex_trylock (pthread_mutex_t *__mutex)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_mutex_lock (pthread_mutex_t *__mutex)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_mutex_timedlock (pthread_mutex_t *__restrict __mutex,
__const struct timespec *__restrict
__abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_mutex_unlock (pthread_mutex_t *__mutex)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 774 "/usr/include/pthread.h" 3 4
extern int pthread_mutexattr_init (pthread_mutexattr_t *__attr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_mutexattr_destroy (pthread_mutexattr_t *__attr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_mutexattr_getpshared (__const pthread_mutexattr_t *
__restrict __attr,
int *__restrict __pshared)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_mutexattr_setpshared (pthread_mutexattr_t *__attr,
int __pshared)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 846 "/usr/include/pthread.h" 3 4
extern int pthread_rwlock_init (pthread_rwlock_t *__restrict __rwlock,
__const pthread_rwlockattr_t *__restrict
__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_rwlock_destroy (pthread_rwlock_t *__rwlock)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_rwlock_rdlock (pthread_rwlock_t *__rwlock)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_rwlock_tryrdlock (pthread_rwlock_t *__rwlock)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_rwlock_timedrdlock (pthread_rwlock_t *__restrict __rwlock,
__const struct timespec *__restrict
__abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_rwlock_wrlock (pthread_rwlock_t *__rwlock)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_rwlock_trywrlock (pthread_rwlock_t *__rwlock)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_rwlock_timedwrlock (pthread_rwlock_t *__restrict __rwlock,
__const struct timespec *__restrict
__abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_rwlock_unlock (pthread_rwlock_t *__rwlock)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_rwlockattr_init (pthread_rwlockattr_t *__attr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_rwlockattr_destroy (pthread_rwlockattr_t *__attr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_rwlockattr_getpshared (__const pthread_rwlockattr_t *
__restrict __attr,
int *__restrict __pshared)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_rwlockattr_setpshared (pthread_rwlockattr_t *__attr,
int __pshared)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_rwlockattr_getkind_np (__const pthread_rwlockattr_t *
__restrict __attr,
int *__restrict __pref)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_rwlockattr_setkind_np (pthread_rwlockattr_t *__attr,
int __pref) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_cond_init (pthread_cond_t *__restrict __cond,
__const pthread_condattr_t *__restrict
__cond_attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_cond_destroy (pthread_cond_t *__cond)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_cond_signal (pthread_cond_t *__cond)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_cond_broadcast (pthread_cond_t *__cond)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_cond_wait (pthread_cond_t *__restrict __cond,
pthread_mutex_t *__restrict __mutex)
__attribute__ ((__nonnull__ (1, 2)));
# 958 "/usr/include/pthread.h" 3 4
extern int pthread_cond_timedwait (pthread_cond_t *__restrict __cond,
pthread_mutex_t *__restrict __mutex,
__const struct timespec *__restrict
__abstime) __attribute__ ((__nonnull__ (1, 2, 3)));
extern int pthread_condattr_init (pthread_condattr_t *__attr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_condattr_destroy (pthread_condattr_t *__attr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_condattr_getpshared (__const pthread_condattr_t *
__restrict __attr,
int *__restrict __pshared)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_condattr_setpshared (pthread_condattr_t *__attr,
int __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_condattr_getclock (__const pthread_condattr_t *
__restrict __attr,
__clockid_t *__restrict __clock_id)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_condattr_setclock (pthread_condattr_t *__attr,
__clockid_t __clock_id)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 1002 "/usr/include/pthread.h" 3 4
extern int pthread_spin_init (pthread_spinlock_t *__lock, int __pshared)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_spin_destroy (pthread_spinlock_t *__lock)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_spin_lock (pthread_spinlock_t *__lock)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_spin_trylock (pthread_spinlock_t *__lock)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_spin_unlock (pthread_spinlock_t *__lock)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_barrier_init (pthread_barrier_t *__restrict __barrier,
__const pthread_barrierattr_t *__restrict
__attr, unsigned int __count)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_barrier_destroy (pthread_barrier_t *__barrier)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_barrier_wait (pthread_barrier_t *__barrier)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_barrierattr_init (pthread_barrierattr_t *__attr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_barrierattr_destroy (pthread_barrierattr_t *__attr)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_barrierattr_getpshared (__const pthread_barrierattr_t *
__restrict __attr,
int *__restrict __pshared)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2)));
extern int pthread_barrierattr_setpshared (pthread_barrierattr_t *__attr,
int __pshared)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
# 1069 "/usr/include/pthread.h" 3 4
extern int pthread_key_create (pthread_key_t *__key,
void (*__destr_function) (void *))
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1)));
extern int pthread_key_delete (pthread_key_t __key) __attribute__ ((__nothrow__));
extern void *pthread_getspecific (pthread_key_t __key) __attribute__ ((__nothrow__));
extern int pthread_setspecific (pthread_key_t __key,
__const void *__pointer) __attribute__ ((__nothrow__)) ;
extern int pthread_getcpuclockid (pthread_t __thread_id,
__clockid_t *__clock_id)
__attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2)));
# 1103 "/usr/include/pthread.h" 3 4
extern int pthread_atfork (void (*__prepare) (void),
void (*__parent) (void),
void (*__child) (void)) __attribute__ ((__nothrow__));
# 1117 "/usr/include/pthread.h" 3 4
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_PTHREAD_H" to "1"
================================================================================
TEST checkRecursiveMacros from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:218)
TESTING: checkRecursiveMacros from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:218)
Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.headers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.headers/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.headers/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
void a(int i, int j) {}
#define a(b) a(b,__LINE__)
int main() {
a(0);
;
return 0;
}
================================================================================
TEST configureCacheDetails from PETSc.utilities.cacheDetails(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/cacheDetails.py:78)
TESTING: configureCacheDetails from PETSc.utilities.cacheDetails(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/cacheDetails.py:78)
Try to determine the size and associativity of the cache.
Pushing language C
All intermediate test results are stored in /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails
sh: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <unistd.h>
long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; }
int main() {
;
return 0;
}
Popping language C
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdio.h>
#include <unistd.h>
long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; }
int main() {
FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_SIZE()); fclose(output);;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Executing: /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest
sh: /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest
Executing: /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest
sh:
Popping language C
Defined "LEVEL1_DCACHE_SIZE" to "32768"
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdio.h>
#include <unistd.h>
long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; }
int main() {
FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Executing: /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest
sh: /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest
Executing: /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest
sh:
Popping language C
Defined "LEVEL1_DCACHE_LINESIZE" to "32"
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdio.h>
#include <unistd.h>
long getconf_LEVEL1_DCACHE_ASSOC() { long val = sysconf(_SC_LEVEL1_DCACHE_ASSOC); return (0 <= val && val <= 2147483647) ? val : 2; }
int main() {
FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_ASSOC()); fclose(output);;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Executing: /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest
sh: /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest
Executing: /tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails/conftest
sh:
Popping language C
Defined "LEVEL1_DCACHE_ASSOC" to "0"
================================================================================
TEST checkMemcmp from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:78)
TESTING: checkMemcmp from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:78)
Check for 8-bit clean memcmp
All intermediate test results are stored in /tmp/petsc-5zlcDX/config.functions
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <string.h>
void exit(int);
int main() {
char c0 = 0x40;
char c1 = (char) 0x80;
char c2 = (char) 0x81;
exit(memcmp(&c0, &c2, 1) < 0 && memcmp(&c1, &c2, 1) < 0 ? 0 : 1);
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Executing: /tmp/petsc-5zlcDX/config.functions/conftest
sh: /tmp/petsc-5zlcDX/config.functions/conftest
Executing: /tmp/petsc-5zlcDX/config.functions/conftest
sh:
================================================================================
TEST checkSysinfo from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:102)
TESTING: checkSysinfo from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:102)
Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG
Checking for function sysinfo
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char sysinfo(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char sysinfo();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_sysinfo) || defined (__stub___sysinfo)
choke me
#else
sysinfo();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_SYSINFO" to "1"
Checking for header: linux/kernel.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/linux/kernel.h" 1 3 4
# 10 "/usr/include/linux/kernel.h" 3 4
struct sysinfo {
long uptime;
unsigned long loads[3];
unsigned long totalram;
unsigned long freeram;
unsigned long sharedram;
unsigned long bufferram;
unsigned long totalswap;
unsigned long freeswap;
unsigned short procs;
unsigned short pad;
unsigned long totalhigh;
unsigned long freehigh;
unsigned int mem_unit;
char _f[20-2*sizeof(long)-sizeof(int)];
};
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_LINUX_KERNEL_H" to "1"
Checking for header: sys/sysinfo.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/usr/include/sys/sysinfo.h" 1 3 4
# 22 "/usr/include/sys/sysinfo.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 23 "/usr/include/sys/sysinfo.h" 2 3 4
# 1 "/usr/include/linux/kernel.h" 1 3 4
# 10 "/usr/include/linux/kernel.h" 3 4
struct sysinfo {
long uptime;
unsigned long loads[3];
unsigned long totalram;
unsigned long freeram;
unsigned long sharedram;
unsigned long bufferram;
unsigned long totalswap;
unsigned long freeswap;
unsigned short procs;
unsigned short pad;
unsigned long totalhigh;
unsigned long freehigh;
unsigned int mem_unit;
char _f[20-2*sizeof(long)-sizeof(int)];
};
# 26 "/usr/include/sys/sysinfo.h" 2 3 4
extern int sysinfo (struct sysinfo *__info) __attribute__ ((__nothrow__));
extern int get_nprocs_conf (void) __attribute__ ((__nothrow__));
extern int get_nprocs (void) __attribute__ ((__nothrow__));
extern long int get_phys_pages (void) __attribute__ ((__nothrow__));
extern long int get_avphys_pages (void) __attribute__ ((__nothrow__));
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Defined "HAVE_SYS_SYSINFO_H" to "1"
Checking for header: sys/systeminfo.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Possible ERROR while running preprocessor: /tmp/petsc-5zlcDX/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory
compilation terminated.
ret = 256
error message = {/tmp/petsc-5zlcDX/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory
compilation terminated.
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/systeminfo.h>
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Possible ERROR while running compiler: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.c:13:4: error: #error "Cannot check sysinfo without special headers"
/tmp/petsc-5zlcDX/config.functions/conftest.c: In function ‘main’:
/tmp/petsc-5zlcDX/config.functions/conftest.c:17:1: warning: implicit declaration of function ‘sysinfo’
}
Source:
#include "confdefs.h"
#include "conffix.h"
#ifdef HAVE_LINUX_KERNEL_H
# include <linux/kernel.h>
# include <linux/sys.h>
# ifdef HAVE_SYS_SYSINFO_H
# include <sys/sysinfo.h>
# endif
#elif defined(HAVE_SYS_SYSTEMINFO_H)
# include <sys/systeminfo.h>
#else
# error "Cannot check sysinfo without special headers"
#endif
int main() {
char buf[10]; long count=10; sysinfo(1, buf, count);
;
return 0;
}
Compile failed inside link
================================================================================
TEST checkVPrintf from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:125)
TESTING: checkVPrintf from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:125)
Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR
Checking for function vprintf
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.functions/conftest.c:10:6: warning: conflicting types for built-in function ‘vprintf’
}
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char vprintf(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char vprintf();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_vprintf) || defined (__stub___vprintf)
choke me
#else
vprintf();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_VPRINTF" to "1"
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.functions/conftest.c: In function ‘main’:
/tmp/petsc-5zlcDX/config.functions/conftest.c:8:8: warning: ‘Argp’ is used uninitialized in this function
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdio.h>
#include <stdarg.h>
int main() {
va_list Argp;
vprintf( "%d", Argp );
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
================================================================================
TEST checkVFPrintf from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:132)
TESTING: checkVFPrintf from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:132)
Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR
Checking for function vfprintf
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.functions/conftest.c:10:6: warning: conflicting types for built-in function ‘vfprintf’
}
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char vfprintf(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char vfprintf();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_vfprintf) || defined (__stub___vfprintf)
choke me
#else
vfprintf();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_VFPRINTF" to "1"
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.functions/conftest.c: In function ‘main’:
/tmp/petsc-5zlcDX/config.functions/conftest.c:8:9: warning: ‘Argp’ is used uninitialized in this function
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdio.h>
#include <stdarg.h>
int main() {
va_list Argp;
vfprintf(stdout, "%d", Argp );
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
================================================================================
TEST checkVSNPrintf from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:139)
TESTING: checkVSNPrintf from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:139)
Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR
Checking for function _vsnprintf
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _vsnprintf(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _vsnprintf();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__vsnprintf) || defined (__stub____vsnprintf)
choke me
#else
_vsnprintf();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_vsnprintf'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_vsnprintf'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _vsnprintf(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _vsnprintf();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__vsnprintf) || defined (__stub____vsnprintf)
choke me
#else
_vsnprintf();
#endif
;
return 0;
}
Checking for function vsnprintf
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.functions/conftest.c:10:6: warning: conflicting types for built-in function ‘vsnprintf’
}
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char vsnprintf(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char vsnprintf();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_vsnprintf) || defined (__stub___vsnprintf)
choke me
#else
vsnprintf();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_VSNPRINTF" to "1"
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.functions/conftest.c: In function ‘main’:
/tmp/petsc-5zlcDX/config.functions/conftest.c:8:10: warning: ‘Argp’ is used uninitialized in this function
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdio.h>
#include <stdarg.h>
int main() {
va_list Argp;char str[6];
vsnprintf(str,5, "%d", Argp );
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
================================================================================
TEST checkNanosleep from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:183)
TESTING: checkNanosleep from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:183)
Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <time.h>
int main() {
struct timespec tp;
tp.tv_sec = 0;
tp.tv_nsec = (long)(1e9);
nanosleep(&tp,0);
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_NANOSLEEP" to "1"
================================================================================
TEST checkSignalHandlerType from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:159)
TESTING: checkSignalHandlerType from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:159)
Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value
Pushing language Cxx
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.functions/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.functions/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
static void myhandler(int sig) {}
int main() {
signal(SIGFPE,myhandler);
;
return 0;
}
Pushing language CXX
Popping language CXX
sh: mpicxx -o /tmp/petsc-5zlcDX/config.functions/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicxx -o /tmp/petsc-5zlcDX/config.functions/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "SIGNAL_CAST" to " "
Popping language Cxx
================================================================================
TEST checkFreeReturnType from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:169)
TESTING: checkFreeReturnType from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:169)
Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Possible ERROR while running compiler: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.c: In function ‘main’:
/tmp/petsc-5zlcDX/config.functions/conftest.c:6:25: error: void value not ignored as it ought to be
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdlib.h>
int main() {
int ierr; void *p; ierr = free(p); return 0;
;
return 0;
}
Compile failed inside link
================================================================================
TEST checkVariableArgumentLists from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:175)
TESTING: checkVariableArgumentLists from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:175)
Checks whether the variable argument list functionality is working
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.functions/conftest.c: In function ‘main’:
/tmp/petsc-5zlcDX/config.functions/conftest.c:7:3: warning: ‘l2’ is used uninitialized in this function
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdarg.h>
int main() {
va_list l1, l2;
va_copy(l1, l2);
return 0;
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_VA_COPY" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function getrusage
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char getrusage(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char getrusage();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_getrusage) || defined (__stub___getrusage)
choke me
#else
getrusage();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_GETRUSAGE" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function sbreak
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char sbreak(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char sbreak();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_sbreak) || defined (__stub___sbreak)
choke me
#else
sbreak();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `sbreak'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `sbreak'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char sbreak(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char sbreak();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_sbreak) || defined (__stub___sbreak)
choke me
#else
sbreak();
#endif
;
return 0;
}
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function getpagesize
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char getpagesize(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char getpagesize();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_getpagesize) || defined (__stub___getpagesize)
choke me
#else
getpagesize();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_GETPAGESIZE" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function task_info
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char task_info(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char task_info();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_task_info) || defined (__stub___task_info)
choke me
#else
task_info();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `task_info'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `task_info'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char task_info(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char task_info();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_task_info) || defined (__stub___task_info)
choke me
#else
task_info();
#endif
;
return 0;
}
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function access
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char access(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char access();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_access) || defined (__stub___access)
choke me
#else
access();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_ACCESS" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function _access
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _access(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _access();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__access) || defined (__stub____access)
choke me
#else
_access();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_access'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_access'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _access(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _access();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__access) || defined (__stub____access)
choke me
#else
_access();
#endif
;
return 0;
}
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function clock
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char clock(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char clock();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_clock) || defined (__stub___clock)
choke me
#else
clock();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_CLOCK" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function drand48
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char drand48(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char drand48();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_drand48) || defined (__stub___drand48)
choke me
#else
drand48();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_DRAND48" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function getcwd
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char getcwd(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char getcwd();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_getcwd) || defined (__stub___getcwd)
choke me
#else
getcwd();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_GETCWD" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function _getcwd
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _getcwd(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _getcwd();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__getcwd) || defined (__stub____getcwd)
choke me
#else
_getcwd();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_getcwd'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_getcwd'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _getcwd(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _getcwd();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__getcwd) || defined (__stub____getcwd)
choke me
#else
_getcwd();
#endif
;
return 0;
}
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function getdomainname
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char getdomainname(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char getdomainname();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_getdomainname) || defined (__stub___getdomainname)
choke me
#else
getdomainname();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_GETDOMAINNAME" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function gethostname
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char gethostname(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char gethostname();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_gethostname) || defined (__stub___gethostname)
choke me
#else
gethostname();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_GETHOSTNAME" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function getpwuid
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char getpwuid(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char getpwuid();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_getpwuid) || defined (__stub___getpwuid)
choke me
#else
getpwuid();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_GETPWUID" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function gettimeofday
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char gettimeofday(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char gettimeofday();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_gettimeofday) || defined (__stub___gettimeofday)
choke me
#else
gettimeofday();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_GETTIMEOFDAY" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function getwd
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char getwd(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char getwd();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_getwd) || defined (__stub___getwd)
choke me
#else
getwd();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): warning: the `getwd' function is dangerous and should not be used.
output: error message = {/tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): warning: the `getwd' function is dangerous and should not be used.
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char getwd(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char getwd();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_getwd) || defined (__stub___getwd)
choke me
#else
getwd();
#endif
;
return 0;
}
Defined "HAVE_GETWD" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function memalign
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char memalign(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char memalign();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_memalign) || defined (__stub___memalign)
choke me
#else
memalign();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_MEMALIGN" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function memmove
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.functions/conftest.c:10:6: warning: conflicting types for built-in function ‘memmove’
}
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char memmove(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char memmove();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_memmove) || defined (__stub___memmove)
choke me
#else
memmove();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_MEMMOVE" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function mkstemp
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char mkstemp(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char mkstemp();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_mkstemp) || defined (__stub___mkstemp)
choke me
#else
mkstemp();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_MKSTEMP" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function popen
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char popen(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char popen();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_popen) || defined (__stub___popen)
choke me
#else
popen();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_POPEN" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function PXFGETARG
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char PXFGETARG();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG)
choke me
#else
PXFGETARG();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `PXFGETARG'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `PXFGETARG'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char PXFGETARG();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG)
choke me
#else
PXFGETARG();
#endif
;
return 0;
}
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function rand
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char rand(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char rand();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_rand) || defined (__stub___rand)
choke me
#else
rand();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_RAND" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function getpagesize
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char getpagesize(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char getpagesize();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_getpagesize) || defined (__stub___getpagesize)
choke me
#else
getpagesize();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_GETPAGESIZE" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function readlink
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char readlink(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char readlink();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_readlink) || defined (__stub___readlink)
choke me
#else
readlink();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_READLINK" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function realpath
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char realpath(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char realpath();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_realpath) || defined (__stub___realpath)
choke me
#else
realpath();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_REALPATH" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function sigaction
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char sigaction(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char sigaction();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_sigaction) || defined (__stub___sigaction)
choke me
#else
sigaction();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_SIGACTION" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function signal
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char signal(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char signal();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_signal) || defined (__stub___signal)
choke me
#else
signal();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_SIGNAL" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function sigset
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char sigset(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char sigset();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_sigset) || defined (__stub___sigset)
choke me
#else
sigset();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_SIGSET" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function usleep
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char usleep(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char usleep();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_usleep) || defined (__stub___usleep)
choke me
#else
usleep();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_USLEEP" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function sleep
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char sleep(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char sleep();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_sleep) || defined (__stub___sleep)
choke me
#else
sleep();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_SLEEP" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function _sleep
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _sleep(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _sleep();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__sleep) || defined (__stub____sleep)
choke me
#else
_sleep();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_sleep'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_sleep'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _sleep(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _sleep();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__sleep) || defined (__stub____sleep)
choke me
#else
_sleep();
#endif
;
return 0;
}
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function socket
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char socket(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char socket();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_socket) || defined (__stub___socket)
choke me
#else
socket();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_SOCKET" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function times
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char times(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char times();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_times) || defined (__stub___times)
choke me
#else
times();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_TIMES" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function gethostbyname
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char gethostbyname(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char gethostbyname();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_gethostbyname) || defined (__stub___gethostbyname)
choke me
#else
gethostbyname();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_GETHOSTBYNAME" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function uname
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char uname(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char uname();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_uname) || defined (__stub___uname)
choke me
#else
uname();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_UNAME" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function snprintf
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.functions/conftest.c:10:6: warning: conflicting types for built-in function ‘snprintf’
}
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char snprintf(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char snprintf();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_snprintf) || defined (__stub___snprintf)
choke me
#else
snprintf();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_SNPRINTF" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function _snprintf
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _snprintf(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _snprintf();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__snprintf) || defined (__stub____snprintf)
choke me
#else
_snprintf();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_snprintf'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_snprintf'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _snprintf(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _snprintf();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__snprintf) || defined (__stub____snprintf)
choke me
#else
_snprintf();
#endif
;
return 0;
}
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function _fullpath
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _fullpath(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _fullpath();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__fullpath) || defined (__stub____fullpath)
choke me
#else
_fullpath();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_fullpath'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_fullpath'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _fullpath(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _fullpath();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__fullpath) || defined (__stub____fullpath)
choke me
#else
_fullpath();
#endif
;
return 0;
}
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function lseek
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char lseek(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char lseek();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_lseek) || defined (__stub___lseek)
choke me
#else
lseek();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_LSEEK" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function _lseek
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _lseek(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _lseek();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__lseek) || defined (__stub____lseek)
choke me
#else
_lseek();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_lseek'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_lseek'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _lseek(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _lseek();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__lseek) || defined (__stub____lseek)
choke me
#else
_lseek();
#endif
;
return 0;
}
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function time
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char time(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char time();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_time) || defined (__stub___time)
choke me
#else
time();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_TIME" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function fork
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.functions/conftest.c:10:6: warning: conflicting types for built-in function ‘fork’
}
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char fork(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char fork();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_fork) || defined (__stub___fork)
choke me
#else
fork();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_FORK" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function stricmp
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char stricmp(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char stricmp();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_stricmp) || defined (__stub___stricmp)
choke me
#else
stricmp();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `stricmp'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `stricmp'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char stricmp(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char stricmp();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_stricmp) || defined (__stub___stricmp)
choke me
#else
stricmp();
#endif
;
return 0;
}
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function strcasecmp
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.functions/conftest.c:10:6: warning: conflicting types for built-in function ‘strcasecmp’
}
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char strcasecmp(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char strcasecmp();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_strcasecmp) || defined (__stub___strcasecmp)
choke me
#else
strcasecmp();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_STRCASECMP" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function bzero
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.functions/conftest.c:10:6: warning: conflicting types for built-in function ‘bzero’
}
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char bzero(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char bzero();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_bzero) || defined (__stub___bzero)
choke me
#else
bzero();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_BZERO" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function dlopen
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char dlopen(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char dlopen();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_dlopen) || defined (__stub___dlopen)
choke me
#else
dlopen();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_DLOPEN" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function dlsym
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char dlsym(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char dlsym();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_dlsym) || defined (__stub___dlsym)
choke me
#else
dlsym();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_DLSYM" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function dlclose
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char dlclose(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char dlclose();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_dlclose) || defined (__stub___dlclose)
choke me
#else
dlclose();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_DLCLOSE" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function dlerror
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char dlerror(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char dlerror();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_dlerror) || defined (__stub___dlerror)
choke me
#else
dlerror();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_DLERROR" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function _intel_fast_memcpy
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memcpy(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _intel_fast_memcpy();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy)
choke me
#else
_intel_fast_memcpy();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_intel_fast_memcpy'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_intel_fast_memcpy'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memcpy(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _intel_fast_memcpy();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy)
choke me
#else
_intel_fast_memcpy();
#endif
;
return 0;
}
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function _intel_fast_memset
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memset(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _intel_fast_memset();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset)
choke me
#else
_intel_fast_memset();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_intel_fast_memset'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_intel_fast_memset'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memset(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _intel_fast_memset();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset)
choke me
#else
_intel_fast_memset();
#endif
;
return 0;
}
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function access
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char access(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char access();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_access) || defined (__stub___access)
choke me
#else
access();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_ACCESS" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function _access
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _access(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _access();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__access) || defined (__stub____access)
choke me
#else
_access();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_access'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_access'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _access(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _access();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__access) || defined (__stub____access)
choke me
#else
_access();
#endif
;
return 0;
}
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function clock
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char clock(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char clock();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_clock) || defined (__stub___clock)
choke me
#else
clock();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_CLOCK" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function drand48
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char drand48(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char drand48();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_drand48) || defined (__stub___drand48)
choke me
#else
drand48();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_DRAND48" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function getcwd
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char getcwd(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char getcwd();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_getcwd) || defined (__stub___getcwd)
choke me
#else
getcwd();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_GETCWD" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function _getcwd
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _getcwd(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _getcwd();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__getcwd) || defined (__stub____getcwd)
choke me
#else
_getcwd();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_getcwd'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_getcwd'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _getcwd(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _getcwd();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__getcwd) || defined (__stub____getcwd)
choke me
#else
_getcwd();
#endif
;
return 0;
}
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function getdomainname
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char getdomainname(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char getdomainname();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_getdomainname) || defined (__stub___getdomainname)
choke me
#else
getdomainname();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_GETDOMAINNAME" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function gethostname
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char gethostname(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char gethostname();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_gethostname) || defined (__stub___gethostname)
choke me
#else
gethostname();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_GETHOSTNAME" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function getpwuid
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char getpwuid(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char getpwuid();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_getpwuid) || defined (__stub___getpwuid)
choke me
#else
getpwuid();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_GETPWUID" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function gettimeofday
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char gettimeofday(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char gettimeofday();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_gettimeofday) || defined (__stub___gettimeofday)
choke me
#else
gettimeofday();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_GETTIMEOFDAY" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function getwd
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char getwd(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char getwd();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_getwd) || defined (__stub___getwd)
choke me
#else
getwd();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): warning: the `getwd' function is dangerous and should not be used.
output: error message = {/tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): warning: the `getwd' function is dangerous and should not be used.
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char getwd(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char getwd();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_getwd) || defined (__stub___getwd)
choke me
#else
getwd();
#endif
;
return 0;
}
Defined "HAVE_GETWD" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function memalign
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char memalign(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char memalign();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_memalign) || defined (__stub___memalign)
choke me
#else
memalign();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_MEMALIGN" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function memmove
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.functions/conftest.c:10:6: warning: conflicting types for built-in function ‘memmove’
}
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char memmove(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char memmove();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_memmove) || defined (__stub___memmove)
choke me
#else
memmove();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_MEMMOVE" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function mkstemp
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char mkstemp(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char mkstemp();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_mkstemp) || defined (__stub___mkstemp)
choke me
#else
mkstemp();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_MKSTEMP" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function popen
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char popen(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char popen();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_popen) || defined (__stub___popen)
choke me
#else
popen();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_POPEN" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function PXFGETARG
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char PXFGETARG();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG)
choke me
#else
PXFGETARG();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `PXFGETARG'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `PXFGETARG'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char PXFGETARG();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG)
choke me
#else
PXFGETARG();
#endif
;
return 0;
}
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function rand
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char rand(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char rand();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_rand) || defined (__stub___rand)
choke me
#else
rand();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_RAND" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function getpagesize
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char getpagesize(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char getpagesize();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_getpagesize) || defined (__stub___getpagesize)
choke me
#else
getpagesize();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_GETPAGESIZE" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function readlink
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char readlink(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char readlink();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_readlink) || defined (__stub___readlink)
choke me
#else
readlink();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_READLINK" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function realpath
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char realpath(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char realpath();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_realpath) || defined (__stub___realpath)
choke me
#else
realpath();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_REALPATH" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function sigaction
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char sigaction(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char sigaction();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_sigaction) || defined (__stub___sigaction)
choke me
#else
sigaction();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_SIGACTION" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function signal
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char signal(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char signal();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_signal) || defined (__stub___signal)
choke me
#else
signal();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_SIGNAL" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function sigset
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char sigset(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char sigset();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_sigset) || defined (__stub___sigset)
choke me
#else
sigset();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_SIGSET" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function usleep
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char usleep(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char usleep();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_usleep) || defined (__stub___usleep)
choke me
#else
usleep();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_USLEEP" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function sleep
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char sleep(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char sleep();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_sleep) || defined (__stub___sleep)
choke me
#else
sleep();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_SLEEP" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function _sleep
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _sleep(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _sleep();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__sleep) || defined (__stub____sleep)
choke me
#else
_sleep();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_sleep'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_sleep'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _sleep(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _sleep();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__sleep) || defined (__stub____sleep)
choke me
#else
_sleep();
#endif
;
return 0;
}
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function socket
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char socket(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char socket();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_socket) || defined (__stub___socket)
choke me
#else
socket();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_SOCKET" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function times
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char times(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char times();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_times) || defined (__stub___times)
choke me
#else
times();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_TIMES" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function gethostbyname
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char gethostbyname(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char gethostbyname();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_gethostbyname) || defined (__stub___gethostbyname)
choke me
#else
gethostbyname();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_GETHOSTBYNAME" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function uname
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char uname(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char uname();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_uname) || defined (__stub___uname)
choke me
#else
uname();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_UNAME" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function snprintf
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.functions/conftest.c:10:6: warning: conflicting types for built-in function ‘snprintf’
}
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char snprintf(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char snprintf();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_snprintf) || defined (__stub___snprintf)
choke me
#else
snprintf();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_SNPRINTF" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function _snprintf
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _snprintf(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _snprintf();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__snprintf) || defined (__stub____snprintf)
choke me
#else
_snprintf();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_snprintf'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_snprintf'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _snprintf(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _snprintf();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__snprintf) || defined (__stub____snprintf)
choke me
#else
_snprintf();
#endif
;
return 0;
}
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function _fullpath
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _fullpath(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _fullpath();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__fullpath) || defined (__stub____fullpath)
choke me
#else
_fullpath();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_fullpath'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_fullpath'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _fullpath(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _fullpath();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__fullpath) || defined (__stub____fullpath)
choke me
#else
_fullpath();
#endif
;
return 0;
}
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function lseek
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char lseek(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char lseek();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_lseek) || defined (__stub___lseek)
choke me
#else
lseek();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_LSEEK" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function _lseek
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _lseek(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _lseek();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__lseek) || defined (__stub____lseek)
choke me
#else
_lseek();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_lseek'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_lseek'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _lseek(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _lseek();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__lseek) || defined (__stub____lseek)
choke me
#else
_lseek();
#endif
;
return 0;
}
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function time
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char time(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char time();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_time) || defined (__stub___time)
choke me
#else
time();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_TIME" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function fork
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.functions/conftest.c:10:6: warning: conflicting types for built-in function ‘fork’
}
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char fork(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char fork();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_fork) || defined (__stub___fork)
choke me
#else
fork();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_FORK" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function stricmp
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char stricmp(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char stricmp();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_stricmp) || defined (__stub___stricmp)
choke me
#else
stricmp();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `stricmp'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `stricmp'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char stricmp(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char stricmp();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_stricmp) || defined (__stub___stricmp)
choke me
#else
stricmp();
#endif
;
return 0;
}
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function strcasecmp
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.functions/conftest.c:10:6: warning: conflicting types for built-in function ‘strcasecmp’
}
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char strcasecmp(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char strcasecmp();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_strcasecmp) || defined (__stub___strcasecmp)
choke me
#else
strcasecmp();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_STRCASECMP" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function bzero
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.functions/conftest.c:10:6: warning: conflicting types for built-in function ‘bzero’
}
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char bzero(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char bzero();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_bzero) || defined (__stub___bzero)
choke me
#else
bzero();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_BZERO" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function dlopen
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char dlopen(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char dlopen();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_dlopen) || defined (__stub___dlopen)
choke me
#else
dlopen();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_DLOPEN" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function dlsym
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char dlsym(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char dlsym();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_dlsym) || defined (__stub___dlsym)
choke me
#else
dlsym();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_DLSYM" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function dlclose
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char dlclose(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char dlclose();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_dlclose) || defined (__stub___dlclose)
choke me
#else
dlclose();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_DLCLOSE" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function dlerror
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char dlerror(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char dlerror();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_dlerror) || defined (__stub___dlerror)
choke me
#else
dlerror();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_DLERROR" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function _intel_fast_memcpy
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memcpy(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _intel_fast_memcpy();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy)
choke me
#else
_intel_fast_memcpy();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_intel_fast_memcpy'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_intel_fast_memcpy'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memcpy(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _intel_fast_memcpy();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy)
choke me
#else
_intel_fast_memcpy();
#endif
;
return 0;
}
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function _intel_fast_memset
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memset(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _intel_fast_memset();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset)
choke me
#else
_intel_fast_memset();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_intel_fast_memset'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `_intel_fast_memset'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memset(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _intel_fast_memset();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset)
choke me
#else
_intel_fast_memset();
#endif
;
return 0;
}
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function getrusage
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char getrusage(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char getrusage();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_getrusage) || defined (__stub___getrusage)
choke me
#else
getrusage();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_GETRUSAGE" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function sbreak
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char sbreak(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char sbreak();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_sbreak) || defined (__stub___sbreak)
choke me
#else
sbreak();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `sbreak'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `sbreak'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char sbreak(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char sbreak();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_sbreak) || defined (__stub___sbreak)
choke me
#else
sbreak();
#endif
;
return 0;
}
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function getpagesize
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char getpagesize(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char getpagesize();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_getpagesize) || defined (__stub___getpagesize)
choke me
#else
getpagesize();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_GETPAGESIZE" to "1"
================================================================================
TEST check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
TESTING: check from config.functions(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/functions.py:29)
Checks for the function "funcName", and if found defines HAVE_"funcName"
Checking for function task_info
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char task_info(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char task_info();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_task_info) || defined (__stub___task_info)
choke me
#else
task_info();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `task_info'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `task_info'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char task_info(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char task_info();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_task_info) || defined (__stub___task_info)
choke me
#else
task_info();
#endif
;
return 0;
}
================================================================================
TEST configureMemorySize from PETSc.utilities.getResidentSetSize(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/getResidentSetSize.py:32)
TESTING: configureMemorySize from PETSc.utilities.getResidentSetSize(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/getResidentSetSize.py:32)
Try to determine how to measure the memory usage
Defined "USE_PROC_FOR_SIZE" to "1"
Using /proc for PetscMemoryGetCurrentUsage()
================================================================================
TEST configureFPTrap from PETSc.utilities.FPTrap(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/FPTrap.py:27)
TESTING: configureFPTrap from PETSc.utilities.FPTrap(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/FPTrap.py:27)
Checking the handling of floating point traps
Checking for header: sigfpe.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Possible ERROR while running preprocessor: /tmp/petsc-5zlcDX/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory
compilation terminated.
ret = 256
error message = {/tmp/petsc-5zlcDX/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory
compilation terminated.
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sigfpe.h>
Checking for header: fpxcp.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Possible ERROR while running preprocessor: /tmp/petsc-5zlcDX/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory
compilation terminated.
ret = 256
error message = {/tmp/petsc-5zlcDX/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory
compilation terminated.
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <fpxcp.h>
Checking for header: floatingpoint.h
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.headers/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.c" 2
Possible ERROR while running preprocessor: /tmp/petsc-5zlcDX/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory
compilation terminated.
ret = 256
error message = {/tmp/petsc-5zlcDX/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory
compilation terminated.
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <floatingpoint.h>
================================================================================
TEST check__int64 from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:44)
TESTING: check__int64 from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:44)
Checks if __int64 exists. This is primarily for windows.
Checking for type: __int64
All intermediate test results are stored in /tmp/petsc-5zlcDX/config.types
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
sh:
Possible ERROR while running compiler: ret = 256
error message = {/tmp/petsc-5zlcDX/config.types/conftest.c: In function ‘main’:
/tmp/petsc-5zlcDX/config.types/conftest.c:12:1: error: ‘__int64’ undeclared (first use in this function)
/tmp/petsc-5zlcDX/config.types/conftest.c:12:1: note: each undeclared identifier is reported only once for each function it appears in
/tmp/petsc-5zlcDX/config.types/conftest.c:12:9: error: expected ‘;’ before ‘a’
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#if STDC_HEADERS
#include <stdlib.h>
#include <stddef.h>
#endif
int main() {
__int64 a;;
return 0;
}
__int64 found
================================================================================
TEST checkSizeTypes from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:50)
TESTING: checkSizeTypes from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:50)
Checks for types associated with sizes, such as size_t.
Checking for type: size_t
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.types/conftest.c: In function ‘main’:
/tmp/petsc-5zlcDX/config.types/conftest.c:12:8: warning: unused variable ‘a’
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#if STDC_HEADERS
#include <stdlib.h>
#include <stddef.h>
#endif
int main() {
size_t a;;
return 0;
}
size_t found
================================================================================
TEST checkFileTypes from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:60)
TESTING: checkFileTypes from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:60)
Checks for types associated with files, such as mode_t, off_t, etc.
Checking for type: mode_t
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.types/conftest.c: In function ‘main’:
/tmp/petsc-5zlcDX/config.types/conftest.c:12:8: warning: unused variable ‘a’
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#if STDC_HEADERS
#include <stdlib.h>
#include <stddef.h>
#endif
int main() {
mode_t a;;
return 0;
}
mode_t found
Checking for type: off_t
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.types/conftest.c: In function ‘main’:
/tmp/petsc-5zlcDX/config.types/conftest.c:12:7: warning: unused variable ‘a’
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#if STDC_HEADERS
#include <stdlib.h>
#include <stddef.h>
#endif
int main() {
off_t a;;
return 0;
}
off_t found
================================================================================
TEST checkIntegerTypes from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:55)
TESTING: checkIntegerTypes from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:55)
Checks for types associated with integers, such as int32_t.
Checking for type: int32_t
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.types/conftest.c: In function ‘main’:
/tmp/petsc-5zlcDX/config.types/conftest.c:12:9: warning: unused variable ‘a’
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#if STDC_HEADERS
#include <stdlib.h>
#include <stddef.h>
#endif
int main() {
int32_t a;;
return 0;
}
int32_t found
================================================================================
TEST checkPID from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:66)
TESTING: checkPID from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:66)
Checks for pid_t, and defines it if necessary
Checking for type: pid_t
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.types/conftest.c: In function ‘main’:
/tmp/petsc-5zlcDX/config.types/conftest.c:12:7: warning: unused variable ‘a’
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#if STDC_HEADERS
#include <stdlib.h>
#include <stddef.h>
#endif
int main() {
pid_t a;;
return 0;
}
pid_t found
================================================================================
TEST checkUID from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:70)
TESTING: checkUID from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:70)
Checks for uid_t and gid_t, and defines them if necessary
sh: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.types/conftest.c
Executing: mpicc -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.headers /tmp/petsc-5zlcDX/config.types/conftest.c
sh: # 1 "/tmp/petsc-5zlcDX/config.types/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.types/conftest.c"
# 1 "/tmp/petsc-5zlcDX/config.types/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.types/conftest.c" 2
# 1 "/tmp/petsc-5zlcDX/config.types/conffix.h" 1
# 3 "/tmp/petsc-5zlcDX/config.types/conftest.c" 2
sys/types.h
================================================================================
TEST checkSignal from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:77)
TESTING: checkSignal from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:77)
Checks the return type of signal() and defines RETSIGTYPE to that type name
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#include <signal.h>
#ifdef signal
#undef signal
#endif
#ifdef __cplusplus
extern "C" void (*signal (int, void(*)(int)))(int);
#else
void (*signal())();
#endif
int main() {
;
return 0;
}
Defined "RETSIGTYPE" to "void"
================================================================================
TEST checkC99Complex from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:98)
TESTING: checkC99Complex from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:98)
Check for complex numbers in in C99 std
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <complex.h>
int main() {
double complex x;
x = I;
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_C99_COMPLEX" to "1"
================================================================================
TEST checkCxxComplex from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:107)
TESTING: checkCxxComplex from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:107)
Check for complex numbers in namespace std
Pushing language Cxx
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.types/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.types/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <complex>
int main() {
std::complex<double> x;
;
return 0;
}
Pushing language CXX
Popping language CXX
sh: mpicxx -o /tmp/petsc-5zlcDX/config.types/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.types/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicxx -o /tmp/petsc-5zlcDX/config.types/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.types/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_CXX_COMPLEX" to "1"
Popping language Cxx
================================================================================
TEST checkFortranKind from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:128)
TESTING: checkFortranKind from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:128)
Checks whether selected_int_kind etc work USE_FORTRANKIND
Pushing language FC
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.types/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.types/conftest.F
sh:
Successful compile:
Source:
program main
integer(kind=selected_int_kind(10)) i
real(kind=selected_real_kind(10)) d
end
Defined "USE_FORTRANKIND" to "1"
Popping language FC
================================================================================
TEST checkFortranDReal from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:140)
TESTING: checkFortranDReal from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:140)
Checks whether dreal is provided in Fortran, and if not defines MISSING_DREAL
Pushing language FC
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.types/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.types/conftest.F
sh:
Possible ERROR while running compiler: ret = 256
error message = {/tmp/petsc-5zlcDX/config.types/conftest.F:3.16:
d = dreal(3.0)
1
Error: Type of argument 'a' in call to 'dreal' at (1) should be COMPLEX(8), not REAL(4)
}
Source:
program main
double precision d
d = dreal(3.0)
end
Compile failed inside link
Defined "MISSING_DREAL" to "1"
Popping language FC
================================================================================
TEST checkConst from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:148)
TESTING: checkConst from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:148)
Checks for working const, and if not found defines it to empty string
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.types/conftest.c: In function ‘main’:
/tmp/petsc-5zlcDX/config.types/conftest.c:30:12: warning: ‘t’ is used uninitialized in this function
/tmp/petsc-5zlcDX/config.types/conftest.c:46:25: warning: ‘b’ is used uninitialized in this function
}
Source:
#include "confdefs.h"
#include "conffix.h"
int main() {
/* Ultrix mips cc rejects this. */
typedef int charset[2]; const charset x;
/* SunOS 4.1.1 cc rejects this. */
char const *const *ccp;
char **p;
/* NEC SVR4.0.2 mips cc rejects this. */
struct point {int x, y;};
static struct point const zero = {0,0};
/* AIX XL C 1.02.0.0 rejects this.
It does not let you subtract one const X* pointer from another in an arm
of an if-expression whose if-part is not a constant expression */
const char *g = "string";
ccp = &g + (g ? g-g : 0);
/* HPUX 7.0 cc rejects these. */
++ccp;
p = (char**) ccp;
ccp = (char const *const *) p;
/* This section avoids unused variable warnings */
if (zero.x);
if (x[0]);
{ /* SCO 3.2v4 cc rejects this. */
char *t;
char const *s = 0 ? (char *) 0 : (char const *) 0;
*t++ = 0;
if (*s);
}
{ /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */
int x[] = {25, 17};
const int *foo = &x[0];
++foo;
}
{ /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */
typedef const int *iptr;
iptr p = 0;
++p;
}
{ /* AIX XL C 1.02.0.0 rejects this saying
"k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */
struct s { int j; const int *ap[3]; };
struct s *b; b->j = 5;
}
{ /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */
const int foo = 10;
/* Get rid of unused variable warning */
if (foo);
}
;
return 0;
}
================================================================================
TEST checkEndian from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:204)
TESTING: checkEndian from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:204)
If the machine is big endian, defines WORDS_BIGENDIAN
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#ifdef HAVE_SYS_PARAM_H
#include <sys/param.h>
#endif
int main() {
#if !BYTE_ORDER || !BIG_ENDIAN || !LITTLE_ENDIAN
bogus endian macros
#endif
;
return 0;
}
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
sh:
Possible ERROR while running compiler: ret = 256
error message = {/tmp/petsc-5zlcDX/config.types/conftest.c: In function ‘main’:
/tmp/petsc-5zlcDX/config.types/conftest.c:11:3: error: ‘not’ undeclared (first use in this function)
/tmp/petsc-5zlcDX/config.types/conftest.c:11:3: note: each undeclared identifier is reported only once for each function it appears in
/tmp/petsc-5zlcDX/config.types/conftest.c:11:7: error: expected ‘;’ before ‘big’
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#ifdef HAVE_SYS_PARAM_H
#include <sys/param.h>
#endif
int main() {
#if BYTE_ORDER != BIG_ENDIAN
not big endian
#endif
;
return 0;
}
================================================================================
TEST checkSizeof from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:257)
TESTING: checkSizeof from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:257)
Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size
Checking for size of type: char
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#if STDC_HEADERS
#include <stdlib.h>
#include <stdio.h>
#include <stddef.h>
#endif
int main() {
FILE *f = fopen("conftestval", "w");
if (!f) exit(1);
fprintf(f, "%lu\n", (unsigned long)sizeof(char));
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Executing: /tmp/petsc-5zlcDX/config.types/conftest
sh: /tmp/petsc-5zlcDX/config.types/conftest
Executing: /tmp/petsc-5zlcDX/config.types/conftest
sh:
Popping language C
Defined "SIZEOF_CHAR" to "1"
================================================================================
TEST checkSizeof from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:257)
TESTING: checkSizeof from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:257)
Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size
Checking for size of type: void *
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#if STDC_HEADERS
#include <stdlib.h>
#include <stdio.h>
#include <stddef.h>
#endif
int main() {
FILE *f = fopen("conftestval", "w");
if (!f) exit(1);
fprintf(f, "%lu\n", (unsigned long)sizeof(void *));
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Executing: /tmp/petsc-5zlcDX/config.types/conftest
sh: /tmp/petsc-5zlcDX/config.types/conftest
Executing: /tmp/petsc-5zlcDX/config.types/conftest
sh:
Popping language C
Defined "SIZEOF_VOID_P" to "4"
================================================================================
TEST checkSizeof from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:257)
TESTING: checkSizeof from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:257)
Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size
Checking for size of type: short
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#if STDC_HEADERS
#include <stdlib.h>
#include <stdio.h>
#include <stddef.h>
#endif
int main() {
FILE *f = fopen("conftestval", "w");
if (!f) exit(1);
fprintf(f, "%lu\n", (unsigned long)sizeof(short));
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Executing: /tmp/petsc-5zlcDX/config.types/conftest
sh: /tmp/petsc-5zlcDX/config.types/conftest
Executing: /tmp/petsc-5zlcDX/config.types/conftest
sh:
Popping language C
Defined "SIZEOF_SHORT" to "2"
================================================================================
TEST checkSizeof from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:257)
TESTING: checkSizeof from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:257)
Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size
Checking for size of type: int
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#if STDC_HEADERS
#include <stdlib.h>
#include <stdio.h>
#include <stddef.h>
#endif
int main() {
FILE *f = fopen("conftestval", "w");
if (!f) exit(1);
fprintf(f, "%lu\n", (unsigned long)sizeof(int));
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Executing: /tmp/petsc-5zlcDX/config.types/conftest
sh: /tmp/petsc-5zlcDX/config.types/conftest
Executing: /tmp/petsc-5zlcDX/config.types/conftest
sh:
Popping language C
Defined "SIZEOF_INT" to "4"
================================================================================
TEST checkSizeof from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:257)
TESTING: checkSizeof from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:257)
Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size
Checking for size of type: long
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#if STDC_HEADERS
#include <stdlib.h>
#include <stdio.h>
#include <stddef.h>
#endif
int main() {
FILE *f = fopen("conftestval", "w");
if (!f) exit(1);
fprintf(f, "%lu\n", (unsigned long)sizeof(long));
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Executing: /tmp/petsc-5zlcDX/config.types/conftest
sh: /tmp/petsc-5zlcDX/config.types/conftest
Executing: /tmp/petsc-5zlcDX/config.types/conftest
sh:
Popping language C
Defined "SIZEOF_LONG" to "4"
================================================================================
TEST checkSizeof from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:257)
TESTING: checkSizeof from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:257)
Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size
Checking for size of type: long long
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#if STDC_HEADERS
#include <stdlib.h>
#include <stdio.h>
#include <stddef.h>
#endif
int main() {
FILE *f = fopen("conftestval", "w");
if (!f) exit(1);
fprintf(f, "%lu\n", (unsigned long)sizeof(long long));
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Executing: /tmp/petsc-5zlcDX/config.types/conftest
sh: /tmp/petsc-5zlcDX/config.types/conftest
Executing: /tmp/petsc-5zlcDX/config.types/conftest
sh:
Popping language C
Defined "SIZEOF_LONG_LONG" to "8"
================================================================================
TEST checkSizeof from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:257)
TESTING: checkSizeof from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:257)
Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size
Checking for size of type: float
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#if STDC_HEADERS
#include <stdlib.h>
#include <stdio.h>
#include <stddef.h>
#endif
int main() {
FILE *f = fopen("conftestval", "w");
if (!f) exit(1);
fprintf(f, "%lu\n", (unsigned long)sizeof(float));
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Executing: /tmp/petsc-5zlcDX/config.types/conftest
sh: /tmp/petsc-5zlcDX/config.types/conftest
Executing: /tmp/petsc-5zlcDX/config.types/conftest
sh:
Popping language C
Defined "SIZEOF_FLOAT" to "4"
================================================================================
TEST checkSizeof from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:257)
TESTING: checkSizeof from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:257)
Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size
Checking for size of type: double
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#if STDC_HEADERS
#include <stdlib.h>
#include <stdio.h>
#include <stddef.h>
#endif
int main() {
FILE *f = fopen("conftestval", "w");
if (!f) exit(1);
fprintf(f, "%lu\n", (unsigned long)sizeof(double));
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Executing: /tmp/petsc-5zlcDX/config.types/conftest
sh: /tmp/petsc-5zlcDX/config.types/conftest
Executing: /tmp/petsc-5zlcDX/config.types/conftest
sh:
Popping language C
Defined "SIZEOF_DOUBLE" to "8"
================================================================================
TEST checkSizeof from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:257)
TESTING: checkSizeof from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:257)
Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size
Checking for size of type: size_t
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#if STDC_HEADERS
#include <stdlib.h>
#include <stdio.h>
#include <stddef.h>
#endif
int main() {
FILE *f = fopen("conftestval", "w");
if (!f) exit(1);
fprintf(f, "%lu\n", (unsigned long)sizeof(size_t));
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Executing: /tmp/petsc-5zlcDX/config.types/conftest
sh: /tmp/petsc-5zlcDX/config.types/conftest
Executing: /tmp/petsc-5zlcDX/config.types/conftest
sh:
Popping language C
Defined "SIZEOF_SIZE_T" to "4"
================================================================================
TEST checkBitsPerByte from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:308)
TESTING: checkBitsPerByte from config.types(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/types.py:308)
Determine the nubmer of bits per byte and define BITS_PER_BYTE
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#if STDC_HEADERS
#include <stdlib.h>
#include <stdio.h>
#endif
int main() {
FILE *f = fopen("conftestval", "w");
char val[2];
int i = 0;
if (!f) exit(1);
val[0]='\1';
val[1]='\0';
while(val[0]) {val[0] <<= 1; i++;}
fprintf(f, "%d\n", i);
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Executing: /tmp/petsc-5zlcDX/config.types/conftest
sh: /tmp/petsc-5zlcDX/config.types/conftest
Executing: /tmp/petsc-5zlcDX/config.types/conftest
sh:
Defined "BITS_PER_BYTE" to "8"
================================================================================
TEST configureMemAlign from PETSc.utilities.memAlign(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/memAlign.py:30)
TESTING: configureMemAlign from PETSc.utilities.memAlign(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/memAlign.py:30)
Choose alignment
Defined "MEMALIGN" to "16"
Memory alignment is 16
================================================================================
TEST configureCHUD from PETSc.utilities.CHUD(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/CHUD.py:25)
TESTING: configureCHUD from PETSc.utilities.CHUD(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/CHUD.py:25)
Determines if the Apple CHUD hardware monitoring utilities are available
sh: uname -s
Executing: uname -s
sh: Linux
================================================================================
TEST check from config.libraries(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/libraries.py:133)
TESTING: check from config.libraries(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/libraries.py:133)
Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName"
- libDir may be a list of directories
- libName may be a list of library names
Checking for function socket in library ['socket', 'nsl'] []
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char socket();
int main() {
socket()
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -lsocket -lnsl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -lsocket -lnsl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /usr/bin/ld: cannot find -lsocket
collect2: ld returned 1 exit status
output: ret = 256
error message = {/usr/bin/ld: cannot find -lsocket
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -lsocket -lnsl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char socket();
int main() {
socket()
;
return 0;
}
Popping language C
================================================================================
TEST check from config.libraries(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/libraries.py:133)
TESTING: check from config.libraries(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/libraries.py:133)
Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName"
- libDir may be a list of directories
- libName may be a list of library names
Checking for function handle_sigfpes in library ['fpe'] []
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char handle_sigfpes();
int main() {
handle_sigfpes()
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -lfpe -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -lfpe -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /usr/bin/ld: cannot find -lfpe
collect2: ld returned 1 exit status
output: ret = 256
error message = {/usr/bin/ld: cannot find -lfpe
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -lfpe -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char handle_sigfpes();
int main() {
handle_sigfpes()
;
return 0;
}
Popping language C
================================================================================
TEST check from config.libraries(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/libraries.py:133)
TESTING: check from config.libraries(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/libraries.py:133)
Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName"
- libDir may be a list of directories
- libName may be a list of library names
Checking for function socket in library ['socket', 'nsl'] []
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char socket();
int main() {
socket()
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -lsocket -lnsl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -lsocket -lnsl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /usr/bin/ld: cannot find -lsocket
collect2: ld returned 1 exit status
output: ret = 256
error message = {/usr/bin/ld: cannot find -lsocket
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -lsocket -lnsl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char socket();
int main() {
socket()
;
return 0;
}
Popping language C
================================================================================
TEST check from config.libraries(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/libraries.py:133)
TESTING: check from config.libraries(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/libraries.py:133)
Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName"
- libDir may be a list of directories
- libName may be a list of library names
Checking for function handle_sigfpes in library ['fpe'] []
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char handle_sigfpes();
int main() {
handle_sigfpes()
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -lfpe -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -lfpe -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /usr/bin/ld: cannot find -lfpe
collect2: ld returned 1 exit status
output: ret = 256
error message = {/usr/bin/ld: cannot find -lfpe
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -lfpe -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char handle_sigfpes();
int main() {
handle_sigfpes()
;
return 0;
}
Popping language C
================================================================================
TEST checkMath from config.libraries(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/libraries.py:208)
TESTING: checkMath from config.libraries(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/libraries.py:208)
Check for sin() in libm, the math library
Checking for function sin in library [''] []
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
double sin(double);
int main() {
double x = 0,y; y = sin(x);
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Popping language C
Checking for function floor in library [''] []
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
double floor(double);
int main() {
double x = 0,y; y = floor(x);
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Popping language C
Checking for function log10 in library [''] []
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
double log10(double);
int main() {
double x = 0,y; y = log10(x);
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.libraries/conftest.o: In function `main':
conftest.c:(.text+0x1b): undefined reference to `log10'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.libraries/conftest.o: In function `main':
conftest.c:(.text+0x1b): undefined reference to `log10'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
double log10(double);
int main() {
double x = 0,y; y = log10(x);
;
return 0;
}
Popping language C
Checking for function sin in library ['m'] []
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
double sin(double);
int main() {
double x = 0,y; y = sin(x);
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_LIBM" to "1"
Popping language C
Checking for function floor in library ['m'] []
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
double floor(double);
int main() {
double x = 0,y; y = floor(x);
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_LIBM" to "1"
Popping language C
Checking for function log10 in library ['m'] []
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
double log10(double);
int main() {
double x = 0,y; y = log10(x);
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_LIBM" to "1"
Popping language C
Checking for function pow in library ['m'] []
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
double pow(double, double);
int main() {
double x = 0,y ; y = pow(x, x);
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_LIBM" to "1"
Popping language C
Using libm for the math library
================================================================================
TEST checkMathErf from config.libraries(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/libraries.py:224)
TESTING: checkMathErf from config.libraries(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/libraries.py:224)
Check for erf() in libm, the math library
Checking for function erf in library ['libm.a'] []
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
double erf(double);
int main() {
double x = 0,y; y = erf(x);
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_LIBM" to "1"
Popping language C
erf() found
Defined "HAVE_ERF" to "1"
================================================================================
TEST checkRealtime from config.libraries(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/libraries.py:233)
TESTING: checkRealtime from config.libraries(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/libraries.py:233)
Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions)
Checking for function clock_gettime in library [''] []
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <time.h>
int main() {
struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Popping language C
realtime functions are linked in by default
================================================================================
TEST checkDynamic from config.libraries(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/libraries.py:249)
TESTING: checkDynamic from config.libraries(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/libraries.py:249)
Check for the header and libraries necessary for dynamic library manipulation
================================================================================
TEST configureMissingDefines from PETSc.utilities.missing(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/missing.py:35)
TESTING: configureMissingDefines from PETSc.utilities.missing(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/missing.py:35)
Checks for limits
All intermediate test results are stored in /tmp/petsc-5zlcDX/PETSc.utilities.missing
sh: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#ifdef PETSC_HAVE_LIMITS_H
#include <limits.h>
#endif
int main() {
int i=INT_MAX;
if (i);
;
return 0;
}
sh: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#ifdef PETSC_HAVE_FLOAT_H
#include <float.h>
#endif
int main() {
double d=DBL_MAX;
if (d);
;
return 0;
}
================================================================================
TEST configureMissingUtypeTypedefs from PETSc.utilities.missing(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/missing.py:45)
TESTING: configureMissingUtypeTypedefs from PETSc.utilities.missing(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/missing.py:45)
Checks if u_short is undefined
sh: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c: In function ‘main’:
/tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c:6:9: warning: unused variable ‘foo’
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
int main() {
u_short foo;
;
return 0;
}
================================================================================
TEST configureMissingFunctions from PETSc.utilities.missing(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/missing.py:51)
TESTING: configureMissingFunctions from PETSc.utilities.missing(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/missing.py:51)
Checks for SOCKETS
================================================================================
TEST configureMissingSignals from PETSc.utilities.missing(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/missing.py:71)
TESTING: configureMissingSignals from PETSc.utilities.missing(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/missing.py:71)
Check for missing signals, and define MISSING_<signal name> if necessary
sh: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGABRT;
if (i);
;
return 0;
}
sh: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGALRM;
if (i);
;
return 0;
}
sh: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGBUS;
if (i);
;
return 0;
}
sh: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGCHLD;
if (i);
;
return 0;
}
sh: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGCONT;
if (i);
;
return 0;
}
sh: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGFPE;
if (i);
;
return 0;
}
sh: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGHUP;
if (i);
;
return 0;
}
sh: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGILL;
if (i);
;
return 0;
}
sh: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGINT;
if (i);
;
return 0;
}
sh: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGKILL;
if (i);
;
return 0;
}
sh: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGPIPE;
if (i);
;
return 0;
}
sh: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGQUIT;
if (i);
;
return 0;
}
sh: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGSEGV;
if (i);
;
return 0;
}
sh: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGSTOP;
if (i);
;
return 0;
}
sh: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGSYS;
if (i);
;
return 0;
}
sh: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGTERM;
if (i);
;
return 0;
}
sh: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGTRAP;
if (i);
;
return 0;
}
sh: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGTSTP;
if (i);
;
return 0;
}
sh: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGURG;
if (i);
;
return 0;
}
sh: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGUSR1;
if (i);
;
return 0;
}
sh: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
int main() {
int i=SIGUSR2;
if (i);
;
return 0;
}
================================================================================
TEST configureMissingGetdomainnamePrototype from PETSc.utilities.missing(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/missing.py:88)
TESTING: configureMissingGetdomainnamePrototype from PETSc.utilities.missing(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/missing.py:88)
sh: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c: In function ‘main’:
/tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c:14:5: warning: unused variable ‘err’
}
Source:
#include "confdefs.h"
#include "conffix.h"
#ifdef PETSC_HAVE_UNISTD_H
#include <unistd.h>
#endif
#ifdef PETSC_HAVE_NETDB_H
#include <netdb.h>
#endif
int main() {
char test[10];
int err = getdomainname(test,10);
;
return 0;
}
Pushing language Cxx
sh: mpicxx -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#ifdef PETSC_HAVE_UNISTD_H
#include <unistd.h>
#endif
#ifdef PETSC_HAVE_NETDB_H
#include <netdb.h>
#endif
int main() {
char test[10];
int err = getdomainname(test,10);
;
return 0;
}
Pushing language CXX
Popping language CXX
sh: mpicxx -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicxx -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Popping language Cxx
================================================================================
TEST configureMissingSrandPrototype from PETSc.utilities.missing(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/missing.py:110)
TESTING: configureMissingSrandPrototype from PETSc.utilities.missing(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/missing.py:110)
sh: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#ifdef PETSC_HAVE_STDLIB_H
#include <stdlib.h>
#endif
int main() {
double a;
long b=10;
srand(b);
a=drand48();
;
return 0;
}
Pushing language Cxx
sh: mpicxx -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#ifdef PETSC_HAVE_STDLIB_H
#include <stdlib.h>
#endif
int main() {
double a;
long b=10;
srand(b);
a=drand48();
;
return 0;
}
Pushing language CXX
Popping language CXX
sh: mpicxx -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicxx -o /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/PETSc.utilities.missing/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Popping language Cxx
================================================================================
TEST configureMissingIntelFastPrototypes from PETSc.utilities.missing(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/missing.py:134)
TESTING: configureMissingIntelFastPrototypes from PETSc.utilities.missing(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/missing.py:134)
================================================================================
TEST configureTimers from PETSc.utilities.timer(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/timer.py:35)
TESTING: configureTimers from PETSc.utilities.timer(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/timer.py:35)
Sets PETSC_HAVE_FAST_MPI_WTIME PETSC_USE_READ_REAL_TIME PETSC_USE_GETCLOCK PETSC_USE_DCLOCK PETSC_USE_NT_TIME.
Checking for function MPI_CRAY_barrier in library [''] []
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char MPI_CRAY_barrier();
int main() {
MPI_CRAY_barrier()
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.libraries/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `MPI_CRAY_barrier'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.libraries/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `MPI_CRAY_barrier'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char MPI_CRAY_barrier();
int main() {
MPI_CRAY_barrier()
;
return 0;
}
Popping language C
Cray-MPI test failure
================================================================================
TEST configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/fortranCommandLine.py:27)
TESTING: configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/PETSc/utilities/fortranCommandLine.py:27)
Check for the mechanism to retrieve command line arguments in Fortran
Pushing language FC
Checking for function in library [''] []
Pushing language FC
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.libraries/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.types -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.libraries/conftest.F
sh:
Successful compile:
Source:
program main
integer i
character*(80) arg
call get_command_argument(i,arg)
end
Pushing language FC
Popping language FC
sh: mpif90 -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpif90 -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Popping language FC
Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1"
Popping language FC
Pushing language C
Checking for function get_command_argument_ in library [''] ['-Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib', '-L/home/buildbot/install/pylith_linux_i686_binbot/lib', '-Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2', '-L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2', '-ldl', '-lmpich', '-lopa', '-lmpl', '-lrt', '-lpthread', '-lgcc_s', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib', '-Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2', '-lm']
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char get_command_argument_();
int main() {
get_command_argument_()
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.libraries/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `get_command_argument_'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.libraries/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `get_command_argument_'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char get_command_argument_();
int main() {
get_command_argument_()
;
return 0;
}
Popping language C
Checking for function getarg_ in library [''] ['-Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib', '-L/home/buildbot/install/pylith_linux_i686_binbot/lib', '-Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2', '-L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2', '-ldl', '-lmpich', '-lopa', '-lmpl', '-lrt', '-lpthread', '-lgcc_s', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib', '-Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2', '-lm']
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char getarg_();
int main() {
getarg_()
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.libraries/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `getarg_'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.libraries/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `getarg_'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char getarg_();
int main() {
getarg_()
;
return 0;
}
Popping language C
Checking for function ipxfargc_
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char ipxfargc_(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char ipxfargc_();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_)
choke me
#else
ipxfargc_();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lm
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lm
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `ipxfargc_'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `ipxfargc_'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lm
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char ipxfargc_(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char ipxfargc_();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_)
choke me
#else
ipxfargc_();
#endif
;
return 0;
}
Checking for function f90_unix_MP_iargc
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char f90_unix_MP_iargc(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char f90_unix_MP_iargc();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_f90_unix_MP_iargc) || defined (__stub___f90_unix_MP_iargc)
choke me
#else
f90_unix_MP_iargc();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lm
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lm
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `f90_unix_MP_iargc'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `f90_unix_MP_iargc'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lm
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char f90_unix_MP_iargc(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char f90_unix_MP_iargc();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_f90_unix_MP_iargc) || defined (__stub___f90_unix_MP_iargc)
choke me
#else
f90_unix_MP_iargc();
#endif
;
return 0;
}
Checking for function PXFGETARG
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char PXFGETARG();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG)
choke me
#else
PXFGETARG();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lm
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lm
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `PXFGETARG'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `PXFGETARG'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lm
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char PXFGETARG();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG)
choke me
#else
PXFGETARG();
#endif
;
return 0;
}
Checking for function iargc_
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char iargc_(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char iargc_();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_iargc_) || defined (__stub___iargc_)
choke me
#else
iargc_();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lm
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lm
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `iargc_'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.o: In function `main':
conftest.c:(.text+0x16): undefined reference to `iargc_'
collect2: ld returned 1 exit status
}
Pushing language C
Popping language C
in mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lm
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char iargc_(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char iargc_();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_iargc_) || defined (__stub___iargc_)
choke me
#else
iargc_();
#endif
;
return 0;
}
Checking for function GETARG@16
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Possible ERROR while running compiler: ret = 256
error message = {/tmp/petsc-5zlcDX/config.functions/conftest.c:10:1: error: stray ‘@’ in program
/tmp/petsc-5zlcDX/config.functions/conftest.c:10:13: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before numeric constant
/tmp/petsc-5zlcDX/config.functions/conftest.c: In function ‘main’:
/tmp/petsc-5zlcDX/config.functions/conftest.c:17:27: error: missing ')' after "defined"
/tmp/petsc-5zlcDX/config.functions/conftest.c:17:28: error: missing binary operator before token "16"
/tmp/petsc-5zlcDX/config.functions/conftest.c:20:1: error: stray ‘@’ in program
/tmp/petsc-5zlcDX/config.functions/conftest.c:20:1: error: ‘GETARG’ undeclared (first use in this function)
/tmp/petsc-5zlcDX/config.functions/conftest.c:20:1: note: each undeclared identifier is reported only once for each function it appears in
/tmp/petsc-5zlcDX/config.functions/conftest.c:20:8: error: expected ‘;’ before numeric constant
}
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char GETARG@16(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char GETARG@16();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub_GETARG@16) || defined (__stub___GETARG@16)
choke me
#else
GETARG@16();
#endif
;
return 0;
}
Compile failed inside link
Checking for function _gfortran_iargc
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.functions/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* System header to define __stub macros and hopefully few prototypes, which can conflict with char _gfortran_iargc(); below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _gfortran_iargc();
int main() {
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
#if defined (__stub__gfortran_iargc) || defined (__stub____gfortran_iargc)
choke me
#else
_gfortran_iargc();
#endif
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lm
Executing: mpicc -o /tmp/petsc-5zlcDX/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.functions/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -lm
sh:
Defined "HAVE__GFORTRAN_IARGC" to "1"
Defined "HAVE_GFORTRAN_IARGC" to "1"
Popping language C
Pushing language Cxx
================================================================================
TEST configureLibrary from config.packages.MPI(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/packages/MPI.py:728)
TESTING: configureLibrary from config.packages.MPI(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/packages/MPI.py:728)
Calls the regular package configureLibrary and then does an additional test needed by MPI
==================================================================================
Checking for a functional MPI
Checking for library in Package specific search directory MPI: []
================================================================================
TEST check from config.libraries(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/libraries.py:133)
TESTING: check from config.libraries(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/libraries.py:133)
Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName"
- libDir may be a list of directories
- libName may be a list of library names
Checking for function MPI_Init in library [] []
Pushing language Cxx
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
char MPI_Init();
#ifdef __cplusplus
}
#endif
int main() {
MPI_Init()
;
return 0;
}
Pushing language CXX
Popping language CXX
sh: mpicxx -o /tmp/petsc-5zlcDX/config.libraries/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicxx -o /tmp/petsc-5zlcDX/config.libraries/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Popping language Cxx
Checking for function MPI_Comm_create in library [] []
Pushing language Cxx
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
char MPI_Comm_create();
#ifdef __cplusplus
}
#endif
int main() {
MPI_Comm_create()
;
return 0;
}
Pushing language CXX
Popping language CXX
sh: mpicxx -o /tmp/petsc-5zlcDX/config.libraries/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicxx -o /tmp/petsc-5zlcDX/config.libraries/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Popping language Cxx
Checking for headers Package specific search directory MPI: ['/home/buildbot/install/pylith_linux_i686_binbot/include']
Pushing language Cxx
================================================================================
TEST checkInclude from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:86)
TESTING: checkInclude from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:86)
Checks if a particular include file can be found along particular include paths
Checking for header files ['mpi.h'] in ['/home/buildbot/install/pylith_linux_i686_binbot/include']
Checking include with compiler flags var CPPFLAGS
sh: mpicxx -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers -I/home/buildbot/install/pylith_linux_i686_binbot/include /tmp/petsc-5zlcDX/config.headers/conftest.cc
Executing: mpicxx -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers -I/home/buildbot/install/pylith_linux_i686_binbot/include /tmp/petsc-5zlcDX/config.headers/conftest.cc
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.cc"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.cc"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.cc" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
extern "C" {
}
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.cc" 2
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 1 3
# 14 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
extern "C" {
# 23 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
typedef int MPI_Datatype;
# 124 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
typedef int MPI_Comm;
typedef int MPI_Group;
typedef int MPI_Win;
typedef struct ADIOI_FileD *MPI_File;
typedef int MPI_Op;
# 210 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
typedef enum MPIR_Topo_type { MPI_GRAPH=1, MPI_CART=2, MPI_DIST_GRAPH=3 } MPIR_Topo_type;
# 224 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
typedef void (MPI_Handler_function) ( MPI_Comm *, int *, ... );
typedef int (MPI_Comm_copy_attr_function)(MPI_Comm, int, void *, void *,
void *, int *);
typedef int (MPI_Comm_delete_attr_function)(MPI_Comm, int, void *, void *);
typedef int (MPI_Type_copy_attr_function)(MPI_Datatype, int, void *, void *,
void *, int *);
typedef int (MPI_Type_delete_attr_function)(MPI_Datatype, int, void *, void *);
typedef int (MPI_Win_copy_attr_function)(MPI_Win, int, void *, void *, void *,
int *);
typedef int (MPI_Win_delete_attr_function)(MPI_Win, int, void *, void *);
typedef void (MPI_Comm_errhandler_function)(MPI_Comm *, int *, ...);
typedef void (MPI_File_errhandler_function)(MPI_File *, int *, ...);
typedef void (MPI_Win_errhandler_function)(MPI_Win *, int *, ...);
typedef MPI_Comm_errhandler_function MPI_Comm_errhandler_fn;
typedef MPI_File_errhandler_function MPI_File_errhandler_fn;
typedef MPI_Win_errhandler_function MPI_Win_errhandler_fn;
# 252 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
typedef int MPI_Errhandler;
# 273 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
typedef int MPI_Request;
typedef void (MPI_User_function) ( void *, void *, int *, MPI_Datatype * );
typedef int (MPI_Copy_function) ( MPI_Comm, int, void *, void *, void *, int * );
typedef int (MPI_Delete_function) ( MPI_Comm, int, void *, void * );
# 324 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
enum MPIR_Combiner_enum {
MPI_COMBINER_NAMED = 1,
MPI_COMBINER_DUP = 2,
MPI_COMBINER_CONTIGUOUS = 3,
MPI_COMBINER_VECTOR = 4,
MPI_COMBINER_HVECTOR_INTEGER = 5,
MPI_COMBINER_HVECTOR = 6,
MPI_COMBINER_INDEXED = 7,
MPI_COMBINER_HINDEXED_INTEGER = 8,
MPI_COMBINER_HINDEXED = 9,
MPI_COMBINER_INDEXED_BLOCK = 10,
MPI_COMBINER_STRUCT_INTEGER = 11,
MPI_COMBINER_STRUCT = 12,
MPI_COMBINER_SUBARRAY = 13,
MPI_COMBINER_DARRAY = 14,
MPI_COMBINER_F90_REAL = 15,
MPI_COMBINER_F90_COMPLEX = 16,
MPI_COMBINER_F90_INTEGER = 17,
MPI_COMBINER_RESIZED = 18
};
typedef int MPI_Info;
# 369 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
typedef int MPI_Aint;
typedef int MPI_Fint;
# 382 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
typedef long long MPI_Offset;
typedef struct MPI_Status {
int count;
int cancelled;
int MPI_SOURCE;
int MPI_TAG;
int MPI_ERROR;
} MPI_Status;
# 438 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
extern MPI_Fint * MPI_F_STATUS_IGNORE;
extern MPI_Fint * MPI_F_STATUSES_IGNORE;
# 457 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
typedef int (MPI_Grequest_cancel_function)(void *, int);
typedef int (MPI_Grequest_free_function)(void *);
typedef int (MPI_Grequest_query_function)(void *, MPI_Status *);
# 543 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
typedef int (MPI_Datarep_conversion_function)(void *, MPI_Datatype, int,
void *, MPI_Offset, void *);
typedef int (MPI_Datarep_extent_function)(MPI_Datatype datatype, MPI_Aint *,
void *);
# 566 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
int MPI_Send(void*, int, MPI_Datatype, int, int, MPI_Comm);
int MPI_Recv(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Status *);
int MPI_Get_count(MPI_Status *, MPI_Datatype, int *);
int MPI_Bsend(void*, int, MPI_Datatype, int, int, MPI_Comm);
int MPI_Ssend(void*, int, MPI_Datatype, int, int, MPI_Comm);
int MPI_Rsend(void*, int, MPI_Datatype, int, int, MPI_Comm);
int MPI_Buffer_attach( void*, int);
int MPI_Buffer_detach( void*, int *);
int MPI_Isend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int MPI_Ibsend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int MPI_Issend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int MPI_Irsend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int MPI_Irecv(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int MPI_Wait(MPI_Request *, MPI_Status *);
int MPI_Test(MPI_Request *, int *, MPI_Status *);
int MPI_Request_free(MPI_Request *);
int MPI_Waitany(int, MPI_Request *, int *, MPI_Status *);
int MPI_Testany(int, MPI_Request *, int *, int *, MPI_Status *);
int MPI_Waitall(int, MPI_Request *, MPI_Status *);
int MPI_Testall(int, MPI_Request *, int *, MPI_Status *);
int MPI_Waitsome(int, MPI_Request *, int *, int *, MPI_Status *);
int MPI_Testsome(int, MPI_Request *, int *, int *, MPI_Status *);
int MPI_Iprobe(int, int, MPI_Comm, int *, MPI_Status *);
int MPI_Probe(int, int, MPI_Comm, MPI_Status *);
int MPI_Cancel(MPI_Request *);
int MPI_Test_cancelled(MPI_Status *, int *);
int MPI_Send_init(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int MPI_Bsend_init(void*, int, MPI_Datatype, int,int, MPI_Comm, MPI_Request *);
int MPI_Ssend_init(void*, int, MPI_Datatype, int,int, MPI_Comm, MPI_Request *);
int MPI_Rsend_init(void*, int, MPI_Datatype, int,int, MPI_Comm, MPI_Request *);
int MPI_Recv_init(void*, int, MPI_Datatype, int,int, MPI_Comm, MPI_Request *);
int MPI_Start(MPI_Request *);
int MPI_Startall(int, MPI_Request *);
int MPI_Sendrecv(void *, int, MPI_Datatype,int, int, void *, int, MPI_Datatype, int, int, MPI_Comm, MPI_Status *);
int MPI_Sendrecv_replace(void*, int, MPI_Datatype, int, int, int, int, MPI_Comm, MPI_Status *);
int MPI_Type_contiguous(int, MPI_Datatype, MPI_Datatype *);
int MPI_Type_vector(int, int, int, MPI_Datatype, MPI_Datatype *);
int MPI_Type_hvector(int, int, MPI_Aint, MPI_Datatype, MPI_Datatype *);
int MPI_Type_indexed(int, int *, int *, MPI_Datatype, MPI_Datatype *);
int MPI_Type_hindexed(int, int *, MPI_Aint *, MPI_Datatype, MPI_Datatype *);
int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, MPI_Datatype *);
int MPI_Address(void*, MPI_Aint *);
int MPI_Type_extent(MPI_Datatype, MPI_Aint *);
int MPI_Type_size(MPI_Datatype, int *);
int MPI_Type_lb(MPI_Datatype, MPI_Aint *);
int MPI_Type_ub(MPI_Datatype, MPI_Aint *);
int MPI_Type_commit(MPI_Datatype *);
int MPI_Type_free(MPI_Datatype *);
int MPI_Get_elements(MPI_Status *, MPI_Datatype, int *);
int MPI_Pack(void*, int, MPI_Datatype, void *, int, int *, MPI_Comm);
int MPI_Unpack(void*, int, int *, void *, int, MPI_Datatype, MPI_Comm);
int MPI_Pack_size(int, MPI_Datatype, MPI_Comm, int *);
int MPI_Barrier(MPI_Comm );
int MPI_Bcast(void*, int, MPI_Datatype, int, MPI_Comm );
int MPI_Gather(void* , int, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm);
int MPI_Gatherv(void* , int, MPI_Datatype, void*, int *, int *, MPI_Datatype, int, MPI_Comm);
int MPI_Scatter(void* , int, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm);
int MPI_Scatterv(void* , int *, int *, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm);
int MPI_Allgather(void* , int, MPI_Datatype, void*, int, MPI_Datatype, MPI_Comm);
int MPI_Allgatherv(void* , int, MPI_Datatype, void*, int *, int *, MPI_Datatype, MPI_Comm);
int MPI_Alltoall(void* , int, MPI_Datatype, void*, int, MPI_Datatype, MPI_Comm);
int MPI_Alltoallv(void* , int *, int *, MPI_Datatype, void*, int *, int *, MPI_Datatype, MPI_Comm);
int MPI_Reduce(void* , void*, int, MPI_Datatype, MPI_Op, int, MPI_Comm);
int MPI_Op_create(MPI_User_function *, int, MPI_Op *);
int MPI_Op_free( MPI_Op *);
int MPI_Allreduce(void* , void*, int, MPI_Datatype, MPI_Op, MPI_Comm);
int MPI_Reduce_scatter(void* , void*, int *, MPI_Datatype, MPI_Op, MPI_Comm);
int MPI_Scan(void* , void*, int, MPI_Datatype, MPI_Op, MPI_Comm );
int MPI_Group_size(MPI_Group, int *);
int MPI_Group_rank(MPI_Group, int *);
int MPI_Group_translate_ranks (MPI_Group, int, int *, MPI_Group, int *);
int MPI_Group_compare(MPI_Group, MPI_Group, int *);
int MPI_Comm_group(MPI_Comm, MPI_Group *);
int MPI_Group_union(MPI_Group, MPI_Group, MPI_Group *);
int MPI_Group_intersection(MPI_Group, MPI_Group, MPI_Group *);
int MPI_Group_difference(MPI_Group, MPI_Group, MPI_Group *);
int MPI_Group_incl(MPI_Group, int, int *, MPI_Group *);
int MPI_Group_excl(MPI_Group, int, int *, MPI_Group *);
int MPI_Group_range_incl(MPI_Group, int, int [][3], MPI_Group *);
int MPI_Group_range_excl(MPI_Group, int, int [][3], MPI_Group *);
int MPI_Group_free(MPI_Group *);
int MPI_Comm_size(MPI_Comm, int *);
int MPI_Comm_rank(MPI_Comm, int *);
int MPI_Comm_compare(MPI_Comm, MPI_Comm, int *);
int MPI_Comm_dup(MPI_Comm, MPI_Comm *);
int MPI_Comm_create(MPI_Comm, MPI_Group, MPI_Comm *);
int MPI_Comm_split(MPI_Comm, int, int, MPI_Comm *);
int MPI_Comm_free(MPI_Comm *);
int MPI_Comm_test_inter(MPI_Comm, int *);
int MPI_Comm_remote_size(MPI_Comm, int *);
int MPI_Comm_remote_group(MPI_Comm, MPI_Group *);
int MPI_Intercomm_create(MPI_Comm, int, MPI_Comm, int, int, MPI_Comm * );
int MPI_Intercomm_merge(MPI_Comm, int, MPI_Comm *);
int MPI_Keyval_create(MPI_Copy_function *, MPI_Delete_function *, int *, void*);
int MPI_Keyval_free(int *);
int MPI_Attr_put(MPI_Comm, int, void*);
int MPI_Attr_get(MPI_Comm, int, void *, int *);
int MPI_Attr_delete(MPI_Comm, int);
int MPI_Topo_test(MPI_Comm, int *);
int MPI_Cart_create(MPI_Comm, int, int *, int *, int, MPI_Comm *);
int MPI_Dims_create(int, int, int *);
int MPI_Graph_create(MPI_Comm, int, int *, int *, int, MPI_Comm *);
int MPI_Graphdims_get(MPI_Comm, int *, int *);
int MPI_Graph_get(MPI_Comm, int, int, int *, int *);
int MPI_Cartdim_get(MPI_Comm, int *);
int MPI_Cart_get(MPI_Comm, int, int *, int *, int *);
int MPI_Cart_rank(MPI_Comm, int *, int *);
int MPI_Cart_coords(MPI_Comm, int, int, int *);
int MPI_Graph_neighbors_count(MPI_Comm, int, int *);
int MPI_Graph_neighbors(MPI_Comm, int, int, int *);
int MPI_Cart_shift(MPI_Comm, int, int, int *, int *);
int MPI_Cart_sub(MPI_Comm, int *, MPI_Comm *);
int MPI_Cart_map(MPI_Comm, int, int *, int *, int *);
int MPI_Graph_map(MPI_Comm, int, int *, int *, int *);
int MPI_Get_processor_name(char *, int *);
int MPI_Get_version(int *, int *);
int MPI_Errhandler_create(MPI_Handler_function *, MPI_Errhandler *);
int MPI_Errhandler_set(MPI_Comm, MPI_Errhandler);
int MPI_Errhandler_get(MPI_Comm, MPI_Errhandler *);
int MPI_Errhandler_free(MPI_Errhandler *);
int MPI_Error_string(int, char *, int *);
int MPI_Error_class(int, int *);
double MPI_Wtime(void);
double MPI_Wtick(void);
double PMPI_Wtime(void);
double PMPI_Wtick(void);
int MPI_Init(int *, char ***);
int MPI_Finalize(void);
int MPI_Initialized(int *);
int MPI_Abort(MPI_Comm, int);
int MPI_Pcontrol(const int, ...);
int MPIR_Dup_fn ( MPI_Comm, int, void *, void *, void *, int * );
int MPI_Close_port(char *);
int MPI_Comm_accept(char *, MPI_Info, int, MPI_Comm, MPI_Comm *);
int MPI_Comm_connect(char *, MPI_Info, int, MPI_Comm, MPI_Comm *);
int MPI_Comm_disconnect(MPI_Comm *);
int MPI_Comm_get_parent(MPI_Comm *);
int MPI_Comm_join(int, MPI_Comm *);
int MPI_Comm_spawn(char *, char *[], int, MPI_Info, int, MPI_Comm, MPI_Comm *,
int []);
int MPI_Comm_spawn_multiple(int, char *[], char **[], int [], MPI_Info [], int,
MPI_Comm, MPI_Comm *, int []);
int MPI_Lookup_name(char *, MPI_Info, char *);
int MPI_Open_port(MPI_Info, char *);
int MPI_Publish_name(char *, MPI_Info, char *);
int MPI_Unpublish_name(char *, MPI_Info, char *);
int MPI_Accumulate(void *, int, MPI_Datatype, int, MPI_Aint, int,
MPI_Datatype, MPI_Op, MPI_Win);
int MPI_Get(void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype,
MPI_Win);
int MPI_Put(void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype,
MPI_Win);
int MPI_Win_complete(MPI_Win);
int MPI_Win_create(void *, MPI_Aint, int, MPI_Info, MPI_Comm, MPI_Win *);
int MPI_Win_fence(int, MPI_Win);
int MPI_Win_free(MPI_Win *);
int MPI_Win_get_group(MPI_Win, MPI_Group *);
int MPI_Win_lock(int, int, int, MPI_Win);
int MPI_Win_post(MPI_Group, int, MPI_Win);
int MPI_Win_start(MPI_Group, int, MPI_Win);
int MPI_Win_test(MPI_Win, int *);
int MPI_Win_unlock(int, MPI_Win);
int MPI_Win_wait(MPI_Win);
int MPI_Alltoallw(void *, int [], int [], MPI_Datatype [], void *, int [],
int [], MPI_Datatype [], MPI_Comm);
int MPI_Exscan(void *, void *, int, MPI_Datatype, MPI_Op, MPI_Comm) ;
int MPI_Add_error_class(int *);
int MPI_Add_error_code(int, int *);
int MPI_Add_error_string(int, char *);
int MPI_Comm_call_errhandler(MPI_Comm, int);
int MPI_Comm_create_keyval(MPI_Comm_copy_attr_function *,
MPI_Comm_delete_attr_function *, int *, void *);
int MPI_Comm_delete_attr(MPI_Comm, int);
int MPI_Comm_free_keyval(int *);
int MPI_Comm_get_attr(MPI_Comm, int, void *, int *);
int MPI_Comm_get_name(MPI_Comm, char *, int *);
int MPI_Comm_set_attr(MPI_Comm, int, void *);
int MPI_Comm_set_name(MPI_Comm, char *);
int MPI_File_call_errhandler(MPI_File, int);
int MPI_Grequest_complete(MPI_Request);
int MPI_Grequest_start(MPI_Grequest_query_function *,
MPI_Grequest_free_function *,
MPI_Grequest_cancel_function *, void *, MPI_Request *);
int MPI_Init_thread(int *, char ***, int, int *);
int MPI_Is_thread_main(int *);
int MPI_Query_thread(int *);
int MPI_Status_set_cancelled(MPI_Status *, int);
int MPI_Status_set_elements(MPI_Status *, MPI_Datatype, int);
int MPI_Type_create_keyval(MPI_Type_copy_attr_function *,
MPI_Type_delete_attr_function *, int *, void *);
int MPI_Type_delete_attr(MPI_Datatype, int);
int MPI_Type_dup(MPI_Datatype, MPI_Datatype *);
int MPI_Type_free_keyval(int *);
int MPI_Type_get_attr(MPI_Datatype, int, void *, int *);
int MPI_Type_get_contents(MPI_Datatype, int, int, int, int [], MPI_Aint [],
MPI_Datatype []);
int MPI_Type_get_envelope(MPI_Datatype, int *, int *, int *, int *);
int MPI_Type_get_name(MPI_Datatype, char *, int *);
int MPI_Type_set_attr(MPI_Datatype, int, void *);
int MPI_Type_set_name(MPI_Datatype, char *);
int MPI_Type_match_size( int, int, MPI_Datatype *);
int MPI_Win_call_errhandler(MPI_Win, int);
int MPI_Win_create_keyval(MPI_Win_copy_attr_function *,
MPI_Win_delete_attr_function *, int *, void *);
int MPI_Win_delete_attr(MPI_Win, int);
int MPI_Win_free_keyval(int *);
int MPI_Win_get_attr(MPI_Win, int, void *, int *);
int MPI_Win_get_name(MPI_Win, char *, int *);
int MPI_Win_set_attr(MPI_Win, int, void *);
int MPI_Win_set_name(MPI_Win, char *);
# 820 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
int MPI_Alloc_mem(MPI_Aint, MPI_Info info, void *baseptr);
int MPI_Comm_create_errhandler(MPI_Comm_errhandler_function *, MPI_Errhandler *);
int MPI_Comm_get_errhandler(MPI_Comm, MPI_Errhandler *);
int MPI_Comm_set_errhandler(MPI_Comm, MPI_Errhandler);
int MPI_File_create_errhandler(MPI_File_errhandler_function *, MPI_Errhandler *);
int MPI_File_get_errhandler(MPI_File, MPI_Errhandler *);
int MPI_File_set_errhandler(MPI_File, MPI_Errhandler);
int MPI_Finalized(int *);
int MPI_Free_mem(void *);
int MPI_Get_address(void *, MPI_Aint *);
int MPI_Info_create(MPI_Info *);
int MPI_Info_delete(MPI_Info, char *);
int MPI_Info_dup(MPI_Info, MPI_Info *);
int MPI_Info_free(MPI_Info *info);
int MPI_Info_get(MPI_Info, char *, int, char *, int *);
int MPI_Info_get_nkeys(MPI_Info, int *);
int MPI_Info_get_nthkey(MPI_Info, int, char *);
int MPI_Info_get_valuelen(MPI_Info, char *, int *, int *);
int MPI_Info_set(MPI_Info, char *, char *);
int MPI_Pack_external(char *, void *, int, MPI_Datatype, void *, MPI_Aint,
MPI_Aint *);
int MPI_Pack_external_size(char *, int, MPI_Datatype, MPI_Aint *);
int MPI_Request_get_status(MPI_Request, int *, MPI_Status *);
int MPI_Status_c2f(MPI_Status *, MPI_Fint *);
int MPI_Status_f2c(MPI_Fint *, MPI_Status *);
int MPI_Type_create_darray(int, int, int, int [], int [], int [], int [], int,
MPI_Datatype, MPI_Datatype *);
int MPI_Type_create_hindexed(int, int [], MPI_Aint [], MPI_Datatype,
MPI_Datatype *);
int MPI_Type_create_hvector(int, int, MPI_Aint, MPI_Datatype, MPI_Datatype *);
int MPI_Type_create_indexed_block(int, int, int [], MPI_Datatype,
MPI_Datatype *);
int MPI_Type_create_resized(MPI_Datatype, MPI_Aint, MPI_Aint, MPI_Datatype *);
int MPI_Type_create_struct(int, int [], MPI_Aint [], MPI_Datatype [],
MPI_Datatype *);
int MPI_Type_create_subarray(int, int [], int [], int [], int, MPI_Datatype,
MPI_Datatype *);
int MPI_Type_get_extent(MPI_Datatype, MPI_Aint *, MPI_Aint *);
int MPI_Type_get_true_extent(MPI_Datatype, MPI_Aint *, MPI_Aint *);
int MPI_Unpack_external(char *, void *, MPI_Aint, MPI_Aint *, void *, int,
MPI_Datatype);
int MPI_Win_create_errhandler(MPI_Win_errhandler_function *, MPI_Errhandler *);
int MPI_Win_get_errhandler(MPI_Win, MPI_Errhandler *);
int MPI_Win_set_errhandler(MPI_Win, MPI_Errhandler);
int MPI_Type_create_f90_integer( int, MPI_Datatype * );
int MPI_Type_create_f90_real( int, int, MPI_Datatype * );
int MPI_Type_create_f90_complex( int, int, MPI_Datatype * );
int MPI_Reduce_local(void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op);
int MPI_Op_commutative(MPI_Op op, int *commute);
int MPI_Reduce_scatter_block(void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm);
int MPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, int [], int [], int outdegree, int [], int [], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph);
int MPI_Dist_graph_create(MPI_Comm comm_old, int n, int [], int [], int [], int [], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph);
int MPI_Dist_graph_neighbors_count(MPI_Comm comm, int *indegree, int *outdegree, int *weighted);
int MPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int [], int [], int maxoutdegree, int [], int []);
# 888 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
int PMPI_Send(void*, int, MPI_Datatype, int, int, MPI_Comm);
int PMPI_Recv(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Status *);
int PMPI_Get_count(MPI_Status *, MPI_Datatype, int *);
int PMPI_Bsend(void*, int, MPI_Datatype, int, int, MPI_Comm);
int PMPI_Ssend(void*, int, MPI_Datatype, int, int, MPI_Comm);
int PMPI_Rsend(void*, int, MPI_Datatype, int, int, MPI_Comm);
int PMPI_Buffer_attach( void* buffer, int);
int PMPI_Buffer_detach( void* buffer, int *);
int PMPI_Isend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int PMPI_Ibsend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int PMPI_Issend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int PMPI_Irsend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int PMPI_Irecv(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int PMPI_Wait(MPI_Request *, MPI_Status *);
int PMPI_Test(MPI_Request *, int *, MPI_Status *);
int PMPI_Request_free(MPI_Request *);
int PMPI_Waitany(int, MPI_Request *, int *, MPI_Status *);
int PMPI_Testany(int, MPI_Request *, int *, int *, MPI_Status *);
int PMPI_Waitall(int, MPI_Request *, MPI_Status *);
int PMPI_Testall(int, MPI_Request *, int *, MPI_Status *);
int PMPI_Waitsome(int, MPI_Request *, int *, int *, MPI_Status *);
int PMPI_Testsome(int, MPI_Request *, int *, int *, MPI_Status *);
int PMPI_Iprobe(int, int, MPI_Comm, int *, MPI_Status *);
int PMPI_Probe(int, int, MPI_Comm, MPI_Status *);
int PMPI_Cancel(MPI_Request *);
int PMPI_Test_cancelled(MPI_Status *, int *);
int PMPI_Send_init(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int PMPI_Bsend_init(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int PMPI_Ssend_init(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int PMPI_Rsend_init(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int PMPI_Recv_init(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int PMPI_Start(MPI_Request *);
int PMPI_Startall(int, MPI_Request *);
int PMPI_Sendrecv(void *, int, MPI_Datatype, int, int, void *, int, MPI_Datatype, int, int, MPI_Comm, MPI_Status *);
int PMPI_Sendrecv_replace(void*, int, MPI_Datatype, int, int, int, int, MPI_Comm, MPI_Status *);
int PMPI_Type_contiguous(int, MPI_Datatype, MPI_Datatype *);
int PMPI_Type_vector(int, int, int, MPI_Datatype, MPI_Datatype *);
int PMPI_Type_hvector(int, int, MPI_Aint, MPI_Datatype, MPI_Datatype *);
int PMPI_Type_indexed(int, int *, int *, MPI_Datatype, MPI_Datatype *);
int PMPI_Type_hindexed(int, int *, MPI_Aint *, MPI_Datatype, MPI_Datatype *);
int PMPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, MPI_Datatype *);
int PMPI_Address(void*, MPI_Aint *);
int PMPI_Type_extent(MPI_Datatype, MPI_Aint *);
int PMPI_Type_size(MPI_Datatype, int *);
int PMPI_Type_lb(MPI_Datatype, MPI_Aint *);
int PMPI_Type_ub(MPI_Datatype, MPI_Aint *);
int PMPI_Type_commit(MPI_Datatype *);
int PMPI_Type_free(MPI_Datatype *);
int PMPI_Get_elements(MPI_Status *, MPI_Datatype, int *);
int PMPI_Pack(void*, int, MPI_Datatype, void *, int, int *, MPI_Comm);
int PMPI_Unpack(void*, int, int *, void *, int, MPI_Datatype, MPI_Comm);
int PMPI_Pack_size(int, MPI_Datatype, MPI_Comm, int *);
int PMPI_Barrier(MPI_Comm );
int PMPI_Bcast(void* buffer, int, MPI_Datatype, int, MPI_Comm );
int PMPI_Gather(void* , int, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm);
int PMPI_Gatherv(void* , int, MPI_Datatype, void*, int *, int *, MPI_Datatype, int, MPI_Comm);
int PMPI_Scatter(void* , int, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm);
int PMPI_Scatterv(void* , int *, int *displs, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm);
int PMPI_Allgather(void* , int, MPI_Datatype, void*, int, MPI_Datatype, MPI_Comm);
int PMPI_Allgatherv(void* , int, MPI_Datatype, void*, int *, int *, MPI_Datatype, MPI_Comm);
int PMPI_Alltoall(void* , int, MPI_Datatype, void*, int, MPI_Datatype, MPI_Comm);
int PMPI_Alltoallv(void* , int *, int *, MPI_Datatype, void*, int *, int *, MPI_Datatype, MPI_Comm);
int PMPI_Reduce(void* , void*, int, MPI_Datatype, MPI_Op, int, MPI_Comm);
int PMPI_Op_create(MPI_User_function *, int, MPI_Op *);
int PMPI_Op_free( MPI_Op *);
int PMPI_Allreduce(void* , void*, int, MPI_Datatype, MPI_Op, MPI_Comm);
int PMPI_Reduce_scatter(void* , void*, int *, MPI_Datatype, MPI_Op, MPI_Comm);
int PMPI_Scan(void* , void*, int, MPI_Datatype, MPI_Op, MPI_Comm );
int PMPI_Group_size(MPI_Group, int *);
int PMPI_Group_rank(MPI_Group, int *);
int PMPI_Group_translate_ranks (MPI_Group, int, int *, MPI_Group, int *);
int PMPI_Group_compare(MPI_Group, MPI_Group, int *);
int PMPI_Comm_group(MPI_Comm, MPI_Group *);
int PMPI_Group_union(MPI_Group, MPI_Group, MPI_Group *);
int PMPI_Group_intersection(MPI_Group, MPI_Group, MPI_Group *);
int PMPI_Group_difference(MPI_Group, MPI_Group, MPI_Group *);
int PMPI_Group_incl(MPI_Group, int, int *, MPI_Group *);
int PMPI_Group_excl(MPI_Group, int, int *, MPI_Group *);
int PMPI_Group_range_incl(MPI_Group, int, int [][3], MPI_Group *);
int PMPI_Group_range_excl(MPI_Group, int, int [][3], MPI_Group *);
int PMPI_Group_free(MPI_Group *);
int PMPI_Comm_size(MPI_Comm, int *);
int PMPI_Comm_rank(MPI_Comm, int *);
int PMPI_Comm_compare(MPI_Comm, MPI_Comm, int *);
int PMPI_Comm_dup(MPI_Comm, MPI_Comm *);
int PMPI_Comm_create(MPI_Comm, MPI_Group, MPI_Comm *);
int PMPI_Comm_split(MPI_Comm, int, int, MPI_Comm *);
int PMPI_Comm_free(MPI_Comm *);
int PMPI_Comm_test_inter(MPI_Comm, int *);
int PMPI_Comm_remote_size(MPI_Comm, int *);
int PMPI_Comm_remote_group(MPI_Comm, MPI_Group *);
int PMPI_Intercomm_create(MPI_Comm, int, MPI_Comm, int, int, MPI_Comm *);
int PMPI_Intercomm_merge(MPI_Comm, int, MPI_Comm *);
int PMPI_Keyval_create(MPI_Copy_function *, MPI_Delete_function *, int *, void*);
int PMPI_Keyval_free(int *);
int PMPI_Attr_put(MPI_Comm, int, void*);
int PMPI_Attr_get(MPI_Comm, int, void *, int *);
int PMPI_Attr_delete(MPI_Comm, int);
int PMPI_Topo_test(MPI_Comm, int *);
int PMPI_Cart_create(MPI_Comm, int, int *, int *, int, MPI_Comm *);
int PMPI_Dims_create(int, int, int *);
int PMPI_Graph_create(MPI_Comm, int, int *, int *, int, MPI_Comm *);
int PMPI_Graphdims_get(MPI_Comm, int *, int *);
int PMPI_Graph_get(MPI_Comm, int, int, int *, int *);
int PMPI_Cartdim_get(MPI_Comm, int *);
int PMPI_Cart_get(MPI_Comm, int, int *, int *, int *);
int PMPI_Cart_rank(MPI_Comm, int *, int *);
int PMPI_Cart_coords(MPI_Comm, int, int, int *);
int PMPI_Graph_neighbors_count(MPI_Comm, int, int *);
int PMPI_Graph_neighbors(MPI_Comm, int, int, int *);
int PMPI_Cart_shift(MPI_Comm, int, int, int *, int *);
int PMPI_Cart_sub(MPI_Comm, int *, MPI_Comm *);
int PMPI_Cart_map(MPI_Comm, int, int *, int *, int *);
int PMPI_Graph_map(MPI_Comm, int, int *, int *, int *);
int PMPI_Get_processor_name(char *, int *);
int PMPI_Get_version(int *, int *);
int PMPI_Errhandler_create(MPI_Handler_function *, MPI_Errhandler *);
int PMPI_Errhandler_set(MPI_Comm, MPI_Errhandler);
int PMPI_Errhandler_get(MPI_Comm, MPI_Errhandler *);
int PMPI_Errhandler_free(MPI_Errhandler *);
int PMPI_Error_string(int, char *, int *);
int PMPI_Error_class(int, int *);
int PMPI_Init(int *, char ***);
int PMPI_Finalize(void);
int PMPI_Initialized(int *);
int PMPI_Abort(MPI_Comm, int);
int PMPI_Pcontrol(const int, ...);
int PMPI_Close_port(char *);
int PMPI_Comm_accept(char *, MPI_Info, int, MPI_Comm, MPI_Comm *);
int PMPI_Comm_connect(char *, MPI_Info, int, MPI_Comm, MPI_Comm *);
int PMPI_Comm_disconnect(MPI_Comm *);
int PMPI_Comm_get_parent(MPI_Comm *);
int PMPI_Comm_join(int, MPI_Comm *);
int PMPI_Comm_spawn(char *, char *[], int, MPI_Info, int, MPI_Comm, MPI_Comm *,
int []);
int PMPI_Comm_spawn_multiple(int, char *[], char **[], int [], MPI_Info [], int,
MPI_Comm, MPI_Comm *, int []);
int PMPI_Lookup_name(char *, MPI_Info, char *);
int PMPI_Open_port(MPI_Info, char *);
int PMPI_Publish_name(char *, MPI_Info, char *);
int PMPI_Unpublish_name(char *, MPI_Info, char *);
int PMPI_Accumulate(void *, int, MPI_Datatype, int, MPI_Aint, int,
MPI_Datatype, MPI_Op, MPI_Win);
int PMPI_Get(void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype,
MPI_Win);
int PMPI_Put(void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype,
MPI_Win);
int PMPI_Win_complete(MPI_Win);
int PMPI_Win_create(void *, MPI_Aint, int, MPI_Info, MPI_Comm, MPI_Win *);
int PMPI_Win_fence(int, MPI_Win);
int PMPI_Win_free(MPI_Win *);
int PMPI_Win_get_group(MPI_Win, MPI_Group *);
int PMPI_Win_lock(int, int, int, MPI_Win);
int PMPI_Win_post(MPI_Group, int, MPI_Win);
int PMPI_Win_start(MPI_Group, int, MPI_Win);
int PMPI_Win_test(MPI_Win, int *);
int PMPI_Win_unlock(int, MPI_Win);
int PMPI_Win_wait(MPI_Win);
int PMPI_Alltoallw(void *, int [], int [], MPI_Datatype [], void *, int [],
int [], MPI_Datatype [], MPI_Comm);
int PMPI_Exscan(void *, void *, int, MPI_Datatype, MPI_Op, MPI_Comm) ;
int PMPI_Add_error_class(int *);
int PMPI_Add_error_code(int, int *);
int PMPI_Add_error_string(int, char *);
int PMPI_Comm_call_errhandler(MPI_Comm, int);
int PMPI_Comm_create_keyval(MPI_Comm_copy_attr_function *,
MPI_Comm_delete_attr_function *, int *, void *);
int PMPI_Comm_delete_attr(MPI_Comm, int);
int PMPI_Comm_free_keyval(int *);
int PMPI_Comm_get_attr(MPI_Comm, int, void *, int *);
int PMPI_Comm_get_name(MPI_Comm, char *, int *);
int PMPI_Comm_set_attr(MPI_Comm, int, void *);
int PMPI_Comm_set_name(MPI_Comm, char *);
int PMPI_File_call_errhandler(MPI_File, int);
int PMPI_Grequest_complete(MPI_Request);
int PMPI_Grequest_start(MPI_Grequest_query_function *,
MPI_Grequest_free_function *,
MPI_Grequest_cancel_function *, void *, MPI_Request *);
int PMPI_Init_thread(int *, char ***, int, int *);
int PMPI_Is_thread_main(int *);
int PMPI_Query_thread(int *);
int PMPI_Status_set_cancelled(MPI_Status *, int);
int PMPI_Status_set_elements(MPI_Status *, MPI_Datatype, int);
int PMPI_Type_create_keyval(MPI_Type_copy_attr_function *,
MPI_Type_delete_attr_function *, int *, void *);
int PMPI_Type_delete_attr(MPI_Datatype, int);
int PMPI_Type_dup(MPI_Datatype, MPI_Datatype *);
int PMPI_Type_free_keyval(int *);
int PMPI_Type_get_attr(MPI_Datatype, int, void *, int *);
int PMPI_Type_get_contents(MPI_Datatype, int, int, int, int [], MPI_Aint [],
MPI_Datatype []);
int PMPI_Type_get_envelope(MPI_Datatype, int *, int *, int *, int *);
int PMPI_Type_get_name(MPI_Datatype, char *, int *);
int PMPI_Type_set_attr(MPI_Datatype, int, void *);
int PMPI_Type_set_name(MPI_Datatype, char *);
int PMPI_Type_match_size( int, int, MPI_Datatype *);
int PMPI_Win_call_errhandler(MPI_Win, int);
int PMPI_Win_create_keyval(MPI_Win_copy_attr_function *,
MPI_Win_delete_attr_function *, int *, void *);
int PMPI_Win_delete_attr(MPI_Win, int);
int PMPI_Win_free_keyval(int *);
int PMPI_Win_get_attr(MPI_Win, int, void *, int *);
int PMPI_Win_get_name(MPI_Win, char *, int *);
int PMPI_Win_set_attr(MPI_Win, int, void *);
int PMPI_Win_set_name(MPI_Win, char *);
int PMPI_Type_create_f90_integer( int, MPI_Datatype * );
int PMPI_Type_create_f90_real( int, int, MPI_Datatype * );
int PMPI_Type_create_f90_complex( int, int, MPI_Datatype * );
int PMPI_Alloc_mem(MPI_Aint, MPI_Info info, void *baseptr);
int PMPI_Comm_create_errhandler(MPI_Comm_errhandler_function *, MPI_Errhandler *);
int PMPI_Comm_get_errhandler(MPI_Comm, MPI_Errhandler *);
int PMPI_Comm_set_errhandler(MPI_Comm, MPI_Errhandler);
int PMPI_File_create_errhandler(MPI_File_errhandler_function *, MPI_Errhandler *);
int PMPI_File_get_errhandler(MPI_File, MPI_Errhandler *);
int PMPI_File_set_errhandler(MPI_File, MPI_Errhandler);
int PMPI_Finalized(int *);
int PMPI_Free_mem(void *);
int PMPI_Get_address(void *, MPI_Aint *);
int PMPI_Info_create(MPI_Info *);
int PMPI_Info_delete(MPI_Info, char *);
int PMPI_Info_dup(MPI_Info, MPI_Info *);
int PMPI_Info_free(MPI_Info *info);
int PMPI_Info_get(MPI_Info, char *, int, char *, int *);
int PMPI_Info_get_nkeys(MPI_Info, int *);
int PMPI_Info_get_nthkey(MPI_Info, int, char *);
int PMPI_Info_get_valuelen(MPI_Info, char *, int *, int *);
int PMPI_Info_set(MPI_Info, char *, char *);
int PMPI_Pack_external(char *, void *, int, MPI_Datatype, void *, MPI_Aint,
MPI_Aint *);
int PMPI_Pack_external_size(char *, int, MPI_Datatype, MPI_Aint *);
int PMPI_Request_get_status(MPI_Request, int *, MPI_Status *);
int PMPI_Status_c2f(MPI_Status *, MPI_Fint *);
int PMPI_Status_f2c(MPI_Fint *, MPI_Status *);
int PMPI_Type_create_darray(int, int, int, int [], int [], int [], int [], int,
MPI_Datatype, MPI_Datatype *);
int PMPI_Type_create_hindexed(int, int [], MPI_Aint [], MPI_Datatype,
MPI_Datatype *);
int PMPI_Type_create_hvector(int, int, MPI_Aint, MPI_Datatype, MPI_Datatype *);
int PMPI_Type_create_indexed_block(int, int, int [], MPI_Datatype,
MPI_Datatype *);
int PMPI_Type_create_resized(MPI_Datatype, MPI_Aint, MPI_Aint, MPI_Datatype *);
int PMPI_Type_create_struct(int, int [], MPI_Aint [], MPI_Datatype [],
MPI_Datatype *);
int PMPI_Type_create_subarray(int, int [], int [], int [], int, MPI_Datatype,
MPI_Datatype *);
int PMPI_Type_get_extent(MPI_Datatype, MPI_Aint *, MPI_Aint *);
int PMPI_Type_get_true_extent(MPI_Datatype, MPI_Aint *, MPI_Aint *);
int PMPI_Unpack_external(char *, void *, MPI_Aint, MPI_Aint *, void *, int,
MPI_Datatype);
int PMPI_Win_create_errhandler(MPI_Win_errhandler_function *, MPI_Errhandler *);
int PMPI_Win_get_errhandler(MPI_Win, MPI_Errhandler *);
int PMPI_Win_set_errhandler(MPI_Win, MPI_Errhandler);
int PMPI_Reduce_local(void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op);
int PMPI_Op_commutative(MPI_Op op, int *commute);
int PMPI_Reduce_scatter_block(void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm);
int PMPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, int [], int [], int outdegree, int [], int [], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph);
int PMPI_Dist_graph_create(MPI_Comm comm_old, int n, int [], int [], int [], int [], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph);
int PMPI_Dist_graph_neighbors_count(MPI_Comm comm, int *indegree, int *outdegree, int *weighted);
int PMPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int [], int [], int maxoutdegree, int [], int []);
# 1181 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpio.h" 1 3
# 13 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpio.h" 3
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 1 3
# 14 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpio.h" 2 3
extern "C" {
# 119 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpio.h" 3
int MPI_File_open(MPI_Comm, char *, int, MPI_Info, MPI_File *);
int MPI_File_close(MPI_File *);
int MPI_File_delete(char *, MPI_Info);
int MPI_File_set_size(MPI_File, MPI_Offset);
int MPI_File_preallocate(MPI_File, MPI_Offset);
int MPI_File_get_size(MPI_File, MPI_Offset *);
int MPI_File_get_group(MPI_File, MPI_Group *);
int MPI_File_get_amode(MPI_File, int *);
int MPI_File_set_info(MPI_File, MPI_Info);
int MPI_File_get_info(MPI_File, MPI_Info *);
int MPI_File_set_view(MPI_File, MPI_Offset, MPI_Datatype,
MPI_Datatype, char *, MPI_Info);
int MPI_File_get_view(MPI_File, MPI_Offset *,
MPI_Datatype *, MPI_Datatype *, char *);
int MPI_File_read_at(MPI_File, MPI_Offset, void *,
int, MPI_Datatype, MPI_Status *);
int MPI_File_read_at_all(MPI_File, MPI_Offset, void *,
int, MPI_Datatype, MPI_Status *);
int MPI_File_write_at(MPI_File, MPI_Offset, void *,
int, MPI_Datatype, MPI_Status *);
int MPI_File_write_at_all(MPI_File, MPI_Offset, void *,
int, MPI_Datatype, MPI_Status *);
int MPI_File_iread_at(MPI_File, MPI_Offset, void *,
int, MPI_Datatype, MPI_Request *);
int MPI_File_iwrite_at(MPI_File, MPI_Offset, void *,
int, MPI_Datatype, MPI_Request *);
int MPI_File_read(MPI_File, void *, int, MPI_Datatype, MPI_Status *);
int MPI_File_read_all(MPI_File, void *, int, MPI_Datatype, MPI_Status *);
int MPI_File_write(MPI_File, void *, int, MPI_Datatype, MPI_Status *);
int MPI_File_write_all(MPI_File, void *, int, MPI_Datatype, MPI_Status *);
int MPI_File_iread(MPI_File, void *, int, MPI_Datatype, MPI_Request *);
int MPI_File_iwrite(MPI_File, void *, int, MPI_Datatype, MPI_Request *);
int MPI_File_seek(MPI_File, MPI_Offset, int);
int MPI_File_get_position(MPI_File, MPI_Offset *);
int MPI_File_get_byte_offset(MPI_File, MPI_Offset, MPI_Offset *);
int MPI_File_read_shared(MPI_File, void *, int, MPI_Datatype, MPI_Status *);
int MPI_File_write_shared(MPI_File, void *, int, MPI_Datatype, MPI_Status *);
int MPI_File_iread_shared(MPI_File, void *, int, MPI_Datatype, MPI_Request *);
int MPI_File_iwrite_shared(MPI_File, void *, int,
MPI_Datatype, MPI_Request *);
int MPI_File_read_ordered(MPI_File, void *, int,
MPI_Datatype, MPI_Status *);
int MPI_File_write_ordered(MPI_File, void *, int,
MPI_Datatype, MPI_Status *);
int MPI_File_seek_shared(MPI_File, MPI_Offset, int);
int MPI_File_get_position_shared(MPI_File, MPI_Offset *);
int MPI_File_read_at_all_begin(MPI_File, MPI_Offset, void *,
int, MPI_Datatype);
int MPI_File_read_at_all_end(MPI_File, void *, MPI_Status *);
int MPI_File_write_at_all_begin(MPI_File, MPI_Offset, void *,
int, MPI_Datatype);
int MPI_File_write_at_all_end(MPI_File, void *, MPI_Status *);
int MPI_File_read_all_begin(MPI_File, void *, int, MPI_Datatype);
int MPI_File_read_all_end(MPI_File, void *, MPI_Status *);
int MPI_File_write_all_begin(MPI_File, void *, int, MPI_Datatype);
int MPI_File_write_all_end(MPI_File, void *, MPI_Status *);
int MPI_File_read_ordered_begin(MPI_File, void *, int, MPI_Datatype);
int MPI_File_read_ordered_end(MPI_File, void *, MPI_Status *);
int MPI_File_write_ordered_begin(MPI_File, void *, int, MPI_Datatype);
int MPI_File_write_ordered_end(MPI_File, void *, MPI_Status *);
int MPI_File_get_type_extent(MPI_File, MPI_Datatype, MPI_Aint *);
int MPI_Register_datarep(char *,
MPI_Datarep_conversion_function *,
MPI_Datarep_conversion_function *,
MPI_Datarep_extent_function *,
void *);
int MPI_File_set_atomicity(MPI_File, int);
int MPI_File_get_atomicity(MPI_File, int *);
int MPI_File_sync(MPI_File);
# 248 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpio.h" 3
MPI_File MPI_File_f2c(MPI_Fint);
MPI_Fint MPI_File_c2f(MPI_File);
# 305 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpio.h" 3
int PMPI_File_open(MPI_Comm, char *, int, MPI_Info, MPI_File *);
int PMPI_File_close(MPI_File *);
int PMPI_File_delete(char *, MPI_Info);
int PMPI_File_set_size(MPI_File, MPI_Offset);
int PMPI_File_preallocate(MPI_File, MPI_Offset);
int PMPI_File_get_size(MPI_File, MPI_Offset *);
int PMPI_File_get_group(MPI_File, MPI_Group *);
int PMPI_File_get_amode(MPI_File, int *);
int PMPI_File_set_info(MPI_File, MPI_Info);
int PMPI_File_get_info(MPI_File, MPI_Info *);
int PMPI_File_set_view(MPI_File, MPI_Offset,
MPI_Datatype, MPI_Datatype, char *, MPI_Info);
int PMPI_File_get_view(MPI_File, MPI_Offset *,
MPI_Datatype *, MPI_Datatype *, char *);
int PMPI_File_read_at(MPI_File, MPI_Offset, void *,
int, MPI_Datatype, MPI_Status *);
int PMPI_File_read_at_all(MPI_File, MPI_Offset, void *,
int, MPI_Datatype, MPI_Status *);
int PMPI_File_write_at(MPI_File, MPI_Offset, void *,
int, MPI_Datatype, MPI_Status *);
int PMPI_File_write_at_all(MPI_File, MPI_Offset, void *,
int, MPI_Datatype, MPI_Status *);
int PMPI_File_iread_at(MPI_File, MPI_Offset, void *,
int, MPI_Datatype, MPI_Request *);
int PMPI_File_iwrite_at(MPI_File, MPI_Offset, void *,
int, MPI_Datatype, MPI_Request *);
int PMPI_File_read(MPI_File, void *, int, MPI_Datatype, MPI_Status *);
int PMPI_File_read_all(MPI_File, void *, int, MPI_Datatype, MPI_Status *);
int PMPI_File_write(MPI_File, void *, int, MPI_Datatype, MPI_Status *);
int PMPI_File_write_all(MPI_File, void *, int, MPI_Datatype, MPI_Status *);
int PMPI_File_iread(MPI_File, void *, int, MPI_Datatype, MPI_Request *);
int PMPI_File_iwrite(MPI_File, void *, int, MPI_Datatype, MPI_Request *);
int PMPI_File_seek(MPI_File, MPI_Offset, int);
int PMPI_File_get_position(MPI_File, MPI_Offset *);
int PMPI_File_get_byte_offset(MPI_File, MPI_Offset, MPI_Offset *);
int PMPI_File_read_shared(MPI_File, void *, int, MPI_Datatype, MPI_Status *);
int PMPI_File_write_shared(MPI_File, void *, int, MPI_Datatype, MPI_Status *);
int PMPI_File_iread_shared(MPI_File, void *, int,
MPI_Datatype, MPI_Request *);
int PMPI_File_iwrite_shared(MPI_File, void *, int,
MPI_Datatype, MPI_Request *);
int PMPI_File_read_ordered(MPI_File, void *, int, MPI_Datatype, MPI_Status *);
int PMPI_File_write_ordered(MPI_File, void *, int, MPI_Datatype, MPI_Status *);
int PMPI_File_seek_shared(MPI_File, MPI_Offset, int);
int PMPI_File_get_position_shared(MPI_File, MPI_Offset *);
int PMPI_File_read_at_all_begin(MPI_File, MPI_Offset, void *,
int, MPI_Datatype);
int PMPI_File_read_at_all_end(MPI_File, void *, MPI_Status *);
int PMPI_File_write_at_all_begin(MPI_File, MPI_Offset, void *,
int, MPI_Datatype);
int PMPI_File_write_at_all_end(MPI_File, void *, MPI_Status *);
int PMPI_File_read_all_begin(MPI_File, void *, int, MPI_Datatype);
int PMPI_File_read_all_end(MPI_File, void *, MPI_Status *);
int PMPI_File_write_all_begin(MPI_File, void *, int, MPI_Datatype);
int PMPI_File_write_all_end(MPI_File, void *, MPI_Status *);
int PMPI_File_read_ordered_begin(MPI_File, void *, int, MPI_Datatype);
int PMPI_File_read_ordered_end(MPI_File, void *, MPI_Status *);
int PMPI_File_write_ordered_begin(MPI_File, void *, int, MPI_Datatype);
int PMPI_File_write_ordered_end(MPI_File, void *, MPI_Status *);
int PMPI_File_get_type_extent(MPI_File, MPI_Datatype, MPI_Aint *);
int PMPI_Register_datarep(char *,
MPI_Datarep_conversion_function *,
MPI_Datarep_conversion_function *,
MPI_Datarep_extent_function *,
void *);
int PMPI_File_set_atomicity(MPI_File, int);
int PMPI_File_get_atomicity(MPI_File, int *);
int PMPI_File_sync(MPI_File);
# 419 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpio.h" 3
MPI_File PMPI_File_f2c(MPI_Fint);
MPI_Fint PMPI_File_c2f(MPI_File);
# 456 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpio.h" 3
}
# 1182 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 2 3
}
# 1197 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpicxx.h" 1 3
# 39 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpicxx.h" 3
# 1 "/usr/include/stdio.h" 1 3 4
# 28 "/usr/include/stdio.h" 3 4
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 29 "/usr/include/stdio.h" 2 3 4
extern "C" {
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 35 "/usr/include/stdio.h" 2 3 4
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 37 "/usr/include/stdio.h" 2 3 4
# 45 "/usr/include/stdio.h" 3 4
struct _IO_FILE;
typedef struct _IO_FILE FILE;
# 65 "/usr/include/stdio.h" 3 4
typedef struct _IO_FILE __FILE;
# 75 "/usr/include/stdio.h" 3 4
# 1 "/usr/include/libio.h" 1 3 4
# 32 "/usr/include/libio.h" 3 4
# 1 "/usr/include/_G_config.h" 1 3 4
# 15 "/usr/include/_G_config.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 16 "/usr/include/_G_config.h" 2 3 4
# 1 "/usr/include/wchar.h" 1 3 4
# 78 "/usr/include/wchar.h" 3 4
typedef struct
{
int __count;
union
{
unsigned int __wch;
char __wchb[4];
} __value;
} __mbstate_t;
# 21 "/usr/include/_G_config.h" 2 3 4
typedef struct
{
__off_t __pos;
__mbstate_t __state;
} _G_fpos_t;
typedef struct
{
__off64_t __pos;
__mbstate_t __state;
} _G_fpos64_t;
# 53 "/usr/include/_G_config.h" 3 4
typedef int _G_int16_t __attribute__ ((__mode__ (__HI__)));
typedef int _G_int32_t __attribute__ ((__mode__ (__SI__)));
typedef unsigned int _G_uint16_t __attribute__ ((__mode__ (__HI__)));
typedef unsigned int _G_uint32_t __attribute__ ((__mode__ (__SI__)));
# 33 "/usr/include/libio.h" 2 3 4
# 53 "/usr/include/libio.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stdarg.h" 1 3 4
# 40 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stdarg.h" 3 4
typedef __builtin_va_list __gnuc_va_list;
# 54 "/usr/include/libio.h" 2 3 4
# 170 "/usr/include/libio.h" 3 4
struct _IO_jump_t; struct _IO_FILE;
# 180 "/usr/include/libio.h" 3 4
typedef void _IO_lock_t;
struct _IO_marker {
struct _IO_marker *_next;
struct _IO_FILE *_sbuf;
int _pos;
# 203 "/usr/include/libio.h" 3 4
};
enum __codecvt_result
{
__codecvt_ok,
__codecvt_partial,
__codecvt_error,
__codecvt_noconv
};
# 271 "/usr/include/libio.h" 3 4
struct _IO_FILE {
int _flags;
char* _IO_read_ptr;
char* _IO_read_end;
char* _IO_read_base;
char* _IO_write_base;
char* _IO_write_ptr;
char* _IO_write_end;
char* _IO_buf_base;
char* _IO_buf_end;
char *_IO_save_base;
char *_IO_backup_base;
char *_IO_save_end;
struct _IO_marker *_markers;
struct _IO_FILE *_chain;
int _fileno;
int _flags2;
__off_t _old_offset;
unsigned short _cur_column;
signed char _vtable_offset;
char _shortbuf[1];
_IO_lock_t *_lock;
# 319 "/usr/include/libio.h" 3 4
__off64_t _offset;
# 328 "/usr/include/libio.h" 3 4
void *__pad1;
void *__pad2;
void *__pad3;
void *__pad4;
size_t __pad5;
int _mode;
char _unused2[15 * sizeof (int) - 4 * sizeof (void *) - sizeof (size_t)];
};
struct _IO_FILE_plus;
extern struct _IO_FILE_plus _IO_2_1_stdin_;
extern struct _IO_FILE_plus _IO_2_1_stdout_;
extern struct _IO_FILE_plus _IO_2_1_stderr_;
# 364 "/usr/include/libio.h" 3 4
typedef __ssize_t __io_read_fn (void *__cookie, char *__buf, size_t __nbytes);
typedef __ssize_t __io_write_fn (void *__cookie, __const char *__buf,
size_t __n);
typedef int __io_seek_fn (void *__cookie, __off64_t *__pos, int __w);
typedef int __io_close_fn (void *__cookie);
typedef __io_read_fn cookie_read_function_t;
typedef __io_write_fn cookie_write_function_t;
typedef __io_seek_fn cookie_seek_function_t;
typedef __io_close_fn cookie_close_function_t;
typedef struct
{
__io_read_fn *read;
__io_write_fn *write;
__io_seek_fn *seek;
__io_close_fn *close;
} _IO_cookie_io_functions_t;
typedef _IO_cookie_io_functions_t cookie_io_functions_t;
struct _IO_cookie_file;
extern void _IO_cookie_init (struct _IO_cookie_file *__cfile, int __read_write,
void *__cookie, _IO_cookie_io_functions_t __fns);
extern "C" {
extern int __underflow (_IO_FILE *);
extern int __uflow (_IO_FILE *);
extern int __overflow (_IO_FILE *, int);
# 458 "/usr/include/libio.h" 3 4
extern int _IO_getc (_IO_FILE *__fp);
extern int _IO_putc (int __c, _IO_FILE *__fp);
extern int _IO_feof (_IO_FILE *__fp) throw ();
extern int _IO_ferror (_IO_FILE *__fp) throw ();
extern int _IO_peekc_locked (_IO_FILE *__fp);
extern void _IO_flockfile (_IO_FILE *) throw ();
extern void _IO_funlockfile (_IO_FILE *) throw ();
extern int _IO_ftrylockfile (_IO_FILE *) throw ();
# 488 "/usr/include/libio.h" 3 4
extern int _IO_vfscanf (_IO_FILE * __restrict, const char * __restrict,
__gnuc_va_list, int *__restrict);
extern int _IO_vfprintf (_IO_FILE *__restrict, const char *__restrict,
__gnuc_va_list);
extern __ssize_t _IO_padn (_IO_FILE *, int, __ssize_t);
extern size_t _IO_sgetn (_IO_FILE *, void *, size_t);
extern __off64_t _IO_seekoff (_IO_FILE *, __off64_t, int, int);
extern __off64_t _IO_seekpos (_IO_FILE *, __off64_t, int);
Found header files ['mpi.h'] in ['/home/buildbot/install/pylith_linux_i686_binbot/include']
Popping language Cxx
================================================================================
TEST configureConversion from config.packages.MPI(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/packages/MPI.py:198)
TESTING: configureConversion from config.packages.MPI(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/packages/MPI.py:198)
Check for the functions which convert communicators between C and Fortran
- Define HAVE_MPI_COMM_F2C and HAVE_MPI_COMM_C2F if they are present
- Some older MPI 1 implementations are missing these
All intermediate test results are stored in /tmp/petsc-5zlcDX/config.packages.MPI
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.packages.MPI -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.packages.MPI -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int main() {
if (MPI_Comm_f2c(MPI_COMM_WORLD));
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_MPI_COMM_F2C" to "1"
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int main() {
if (MPI_Comm_c2f(MPI_COMM_WORLD));
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_MPI_COMM_C2F" to "1"
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.packages.MPI/conftest.c: In function ‘main’:
/tmp/petsc-5zlcDX/config.packages.MPI/conftest.c:6:10: warning: unused variable ‘a’
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int main() {
MPI_Fint a;
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_MPI_FINT" to "1"
================================================================================
TEST configureMPI2 from config.packages.MPI(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/packages/MPI.py:182)
TESTING: configureMPI2 from config.packages.MPI(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/packages/MPI.py:182)
Check for functions added to the interface in MPI-2
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int main() {
int flag;if (MPI_Finalized(&flag));
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_MPI_FINALIZED" to "1"
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int main() {
if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF));
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_MPI_IN_PLACE" to "1"
================================================================================
TEST configureTypes from config.packages.MPI(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/packages/MPI.py:218)
TESTING: configureTypes from config.packages.MPI(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/packages/MPI.py:218)
Checking for MPI types
Checking for size of type: MPI_Comm
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#if STDC_HEADERS
#include <stdlib.h>
#include <stdio.h>
#include <stddef.h>
#endif
#define MPICH_IGNORE_CXX_SEEK
#define MPICH_SKIP_MPICXX 1
#define OMPI_SKIP_MPICXX 1
#include <mpi.h>
int main() {
FILE *f = fopen("conftestval", "w");
if (!f) exit(1);
fprintf(f, "%lu\n", (unsigned long)sizeof(MPI_Comm));
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Executing: /tmp/petsc-5zlcDX/config.types/conftest
sh: /tmp/petsc-5zlcDX/config.types/conftest
Executing: /tmp/petsc-5zlcDX/config.types/conftest
sh:
Popping language C
Defined "SIZEOF_MPI_COMM" to "4"
Checking for size of type: MPI_Fint
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.types/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#if STDC_HEADERS
#include <stdlib.h>
#include <stdio.h>
#include <stddef.h>
#endif
#define MPICH_IGNORE_CXX_SEEK
#define MPICH_SKIP_MPICXX 1
#define OMPI_SKIP_MPICXX 1
#include <mpi.h>
int main() {
FILE *f = fopen("conftestval", "w");
if (!f) exit(1);
fprintf(f, "%lu\n", (unsigned long)sizeof(MPI_Fint));
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.types/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Executing: /tmp/petsc-5zlcDX/config.types/conftest
sh: /tmp/petsc-5zlcDX/config.types/conftest
Executing: /tmp/petsc-5zlcDX/config.types/conftest
sh:
Popping language C
Defined "SIZEOF_MPI_FINT" to "4"
================================================================================
TEST configureMPITypes from config.packages.MPI(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/packages/MPI.py:230)
TESTING: configureMPITypes from config.packages.MPI(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/packages/MPI.py:230)
Checking for MPI Datatype handles
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#ifdef PETSC_HAVE_STDLIB_H
#include <stdlib.h>
#endif
#include <mpi.h>
int main() {
MPI_Aint size;
int ierr;
MPI_Init(0,0);
ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size);
if(ierr || (size == 0)) exit(1);
MPI_Finalize();
;
return 0;
}
Pushing language C
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#ifdef PETSC_HAVE_STDLIB_H
#include <stdlib.h>
#endif
#include <mpi.h>
int main() {
MPI_Aint size;
int ierr;
MPI_Init(0,0);
ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size);
if(ierr || (size == 0)) exit(1);
MPI_Finalize();
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Executing: /tmp/petsc-5zlcDX/config.packages.MPI/conftest
sh: /tmp/petsc-5zlcDX/config.packages.MPI/conftest
Executing: /tmp/petsc-5zlcDX/config.packages.MPI/conftest
sh:
Defined "HAVE_MPI_LONG_DOUBLE" to "1"
Popping language C
================================================================================
TEST configureMissingPrototypes from config.packages.MPI(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/packages/MPI.py:300)
TESTING: configureMissingPrototypes from config.packages.MPI(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/packages/MPI.py:300)
Checks for missing prototypes, which it adds to petscfix.h
================================================================================
TEST SGIMPICheck from config.packages.MPI(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/packages/MPI.py:614)
TESTING: SGIMPICheck from config.packages.MPI(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/packages/MPI.py:614)
Returns true if SGI MPI is used
Checking for function MPI_SGI_barrier in library [] []
Pushing language Cxx
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
char MPI_SGI_barrier();
#ifdef __cplusplus
}
#endif
int main() {
MPI_SGI_barrier()
;
return 0;
}
Pushing language CXX
Popping language CXX
sh: mpicxx -o /tmp/petsc-5zlcDX/config.libraries/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicxx -o /tmp/petsc-5zlcDX/config.libraries/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Possible ERROR while running linker: /tmp/petsc-5zlcDX/config.libraries/conftest.o: In function `main':
conftest.cc:(.text+0x16): undefined reference to `MPI_SGI_barrier'
collect2: ld returned 1 exit status
output: ret = 256
error message = {/tmp/petsc-5zlcDX/config.libraries/conftest.o: In function `main':
conftest.cc:(.text+0x16): undefined reference to `MPI_SGI_barrier'
collect2: ld returned 1 exit status
}
Pushing language CXX
Popping language CXX
in mpicxx -o /tmp/petsc-5zlcDX/config.libraries/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
char MPI_SGI_barrier();
#ifdef __cplusplus
}
#endif
int main() {
MPI_SGI_barrier()
;
return 0;
}
Popping language Cxx
SGI MPI test failure
================================================================================
TEST CxxMPICheck from config.packages.MPI(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/packages/MPI.py:624)
TESTING: CxxMPICheck from config.packages.MPI(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/packages/MPI.py:624)
Make sure C++ can compile and link
Pushing language Cxx
Checking for header mpi.h
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int main() {
;
return 0;
}
Checking for C++ MPI_Finalize()
Checking for function MPI_Finalize in library [] []
Pushing language Cxx
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <mpi.h>
int main() {
int ierr;
ierr = MPI_Finalize();;
return 0;
}
Pushing language CXX
Popping language CXX
sh: mpicxx -o /tmp/petsc-5zlcDX/config.libraries/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicxx -o /tmp/petsc-5zlcDX/config.libraries/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Popping language Cxx
Popping language Cxx
================================================================================
TEST FortranMPICheck from config.packages.MPI(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/packages/MPI.py:642)
TESTING: FortranMPICheck from config.packages.MPI(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/packages/MPI.py:642)
Make sure fortran include [mpif.h] and library symbols are found
Pushing language FC
Checking for header mpif.h
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.libraries/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.libraries/conftest.F
sh:
Successful compile:
Source:
program main
include 'mpif.h'
end
Checking for fortran mpi_init()
Checking for function in library [] []
Pushing language FC
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.libraries/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.libraries/conftest.F
sh:
Successful compile:
Source:
program main
include 'mpif.h'
integer ierr
call mpi_init(ierr)
end
Pushing language FC
Popping language FC
sh: mpif90 -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpif90 -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Popping language FC
Checking for mpi.mod
Checking for function in library [] []
Pushing language FC
sh: mpif90 -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.libraries/conftest.F
Executing: mpif90 -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.libraries -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.libraries/conftest.F
sh:
Successful compile:
Source:
program main
use mpi
integer ierr
call mpi_init(ierr)
end
Pushing language FC
Popping language FC
sh: mpif90 -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpif90 -o /tmp/petsc-5zlcDX/config.libraries/conftest -fPIC -Wall -Wno-unused-variable -Wno-line-truncation -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Popping language FC
Defined "HAVE_MPI_F90MODULE" to "1"
Popping language FC
================================================================================
TEST configureIO from config.packages.MPI(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/packages/MPI.py:667)
TESTING: configureIO from config.packages.MPI(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/packages/MPI.py:667)
Check for the functions in MPI/IO
- Define HAVE_MPIIO if they are present
- Some older MPI 1 implementations are missing these
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int main() {
MPI_Aint lb, extent;
if (MPI_Type_get_extent(MPI_INT, &lb, &extent));
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.packages.MPI/conftest.c: In function ‘main’:
/tmp/petsc-5zlcDX/config.packages.MPI/conftest.c:9:23: warning: ‘fh’ is used uninitialized in this function
/tmp/petsc-5zlcDX/config.packages.MPI/conftest.c:9:23: warning: ‘buf’ is used uninitialized in this function
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int main() {
MPI_File fh;
void *buf;
MPI_Status status;
if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status));
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.packages.MPI/conftest.c: In function ‘main’:
/tmp/petsc-5zlcDX/config.packages.MPI/conftest.c:9:22: warning: ‘fh’ is used uninitialized in this function
/tmp/petsc-5zlcDX/config.packages.MPI/conftest.c:9:22: warning: ‘buf’ is used uninitialized in this function
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int main() {
MPI_File fh;
void *buf;
MPI_Status status;
if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status));
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.packages.MPI/conftest.c: In function ‘main’:
/tmp/petsc-5zlcDX/config.packages.MPI/conftest.c:9:1: warning: passing argument 5 of ‘MPI_File_set_view’ discards qualifiers from pointer target type
/home/buildbot/install/pylith_linux_i686_binbot/include/mpio.h:131:5: note: expected ‘char *’ but argument is of type ‘const char *’
/tmp/petsc-5zlcDX/config.packages.MPI/conftest.c:9:22: warning: ‘fh’ is used uninitialized in this function
/tmp/petsc-5zlcDX/config.packages.MPI/conftest.c:9:22: warning: ‘disp’ is used uninitialized in this function
/tmp/petsc-5zlcDX/config.packages.MPI/conftest.c:9:22: warning: ‘info’ is used uninitialized in this function
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int main() {
MPI_File fh;
MPI_Offset disp;
MPI_Info info;
if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info));
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.packages.MPI/conftest.c: In function ‘main’:
/tmp/petsc-5zlcDX/config.packages.MPI/conftest.c:8:1: warning: passing argument 2 of ‘MPI_File_open’ discards qualifiers from pointer target type
/home/buildbot/install/pylith_linux_i686_binbot/include/mpio.h:119:5: note: expected ‘char *’ but argument is of type ‘const char *’
/tmp/petsc-5zlcDX/config.packages.MPI/conftest.c:8:18: warning: ‘info’ is used uninitialized in this function
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int main() {
MPI_File fh;
MPI_Info info;
if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh));
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.c
sh:
Possible ERROR while running compiler: error message = {/tmp/petsc-5zlcDX/config.packages.MPI/conftest.c: In function ‘main’:
/tmp/petsc-5zlcDX/config.packages.MPI/conftest.c:7:10: warning: unused variable ‘info’
}
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int main() {
MPI_File fh;
MPI_Info info;
if (MPI_File_close(&fh));
;
return 0;
}
Pushing language C
Popping language C
sh: mpicc -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicc -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_MPIIO" to "1"
================================================================================
TEST findMPIInc from config.packages.MPI(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/packages/MPI.py:704)
TESTING: findMPIInc from config.packages.MPI(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/packages/MPI.py:704)
Find MPI include paths from "mpicc -show"
sh: mpicc -show
Executing: mpicc -show
sh: gcc -I/home/buildbot/install/pylith_linux_i686_binbot/include -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread
compilers: Checking arg gcc
compilers: Checking arg -I/home/buildbot/install/pylith_linux_i686_binbot/include
compilers: Found include directory: /home/buildbot/install/pylith_linux_i686_binbot/include
compilers: Checking arg -L/home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Checking arg -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib
compilers: Checking arg -lmpich
compilers: Checking arg -lopa
compilers: Checking arg -lmpl
compilers: Checking arg -lrt
compilers: Checking arg -lpthread
Checking for function MPI_Alltoallw in library [] []
Pushing language Cxx
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
char MPI_Alltoallw();
#ifdef __cplusplus
}
#endif
int main() {
MPI_Alltoallw()
;
return 0;
}
Pushing language CXX
Popping language CXX
sh: mpicxx -o /tmp/petsc-5zlcDX/config.libraries/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicxx -o /tmp/petsc-5zlcDX/config.libraries/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Popping language Cxx
Checking for function MPI_Type_create_indexed_block in library [] []
Pushing language Cxx
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
char MPI_Type_create_indexed_block();
#ifdef __cplusplus
}
#endif
int main() {
MPI_Type_create_indexed_block()
;
return 0;
}
Pushing language CXX
Popping language CXX
sh: mpicxx -o /tmp/petsc-5zlcDX/config.libraries/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicxx -o /tmp/petsc-5zlcDX/config.libraries/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Popping language Cxx
Defined "HAVE_MPI_ALLTOALLW" to "1"
Checking for function MPI_Comm_spawn in library [] []
Pushing language Cxx
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
char MPI_Comm_spawn();
#ifdef __cplusplus
}
#endif
int main() {
MPI_Comm_spawn()
;
return 0;
}
Pushing language CXX
Popping language CXX
sh: mpicxx -o /tmp/petsc-5zlcDX/config.libraries/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicxx -o /tmp/petsc-5zlcDX/config.libraries/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Popping language Cxx
Defined "HAVE_MPI_COMM_SPAWN" to "1"
Checking for function MPI_Win_create in library [] []
Pushing language Cxx
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
char MPI_Win_create();
#ifdef __cplusplus
}
#endif
int main() {
MPI_Win_create()
;
return 0;
}
Pushing language CXX
Popping language CXX
sh: mpicxx -o /tmp/petsc-5zlcDX/config.libraries/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicxx -o /tmp/petsc-5zlcDX/config.libraries/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Popping language Cxx
Defined "HAVE_MPI_WIN_CREATE" to "1"
Checking for function MPI_Finalized in library [] []
Pushing language Cxx
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
char MPI_Finalized();
#ifdef __cplusplus
}
#endif
int main() {
MPI_Finalized()
;
return 0;
}
Pushing language CXX
Popping language CXX
sh: mpicxx -o /tmp/petsc-5zlcDX/config.libraries/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicxx -o /tmp/petsc-5zlcDX/config.libraries/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Popping language Cxx
Defined "HAVE_MPI_FINALIZED" to "1"
Checking for function MPI_Exscan in library [] []
Pushing language Cxx
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
char MPI_Exscan();
#ifdef __cplusplus
}
#endif
int main() {
MPI_Exscan()
;
return 0;
}
Pushing language CXX
Popping language CXX
sh: mpicxx -o /tmp/petsc-5zlcDX/config.libraries/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicxx -o /tmp/petsc-5zlcDX/config.libraries/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Popping language Cxx
Defined "HAVE_MPI_EXSCAN" to "1"
================================================================================
TEST checkSharedLibrary from config.packages.MPI(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/packages/MPI.py:132)
TESTING: checkSharedLibrary from config.packages.MPI(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/packages/MPI.py:132)
Sets flag indicating if MPI libraries are shared or not and
determines if MPI libraries CANNOT be used by shared libraries
================================================================================
TEST configureMPIEXEC from config.packages.MPI(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/packages/MPI.py:145)
TESTING: configureMPIEXEC from config.packages.MPI(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/packages/MPI.py:145)
Checking for mpiexec
Pushing language C
Popping language C
Checking for program /home/buildbot/install/pylith_linux_i686_binbot/bin/mpiexec...found
Defined make macro "MPIEXEC" to "/home/buildbot/install/pylith_linux_i686_binbot/bin/mpiexec"
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/buildbot/install/pylith_linux_i686_binbot/include /tmp/petsc-5zlcDX/config.packages.MPI/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/buildbot/install/pylith_linux_i686_binbot/include /tmp/petsc-5zlcDX/config.packages.MPI/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
#ifdef __cplusplus
extern "C"
#endif
int init(int argc, char *argv[]) {
int isInitialized;
MPI_Init(&argc, &argv);
MPI_Initialized(&isInitialized);
return (int) isInitialized;
}
Pushing language C
Popping language C
sh: mpicxx -o /tmp/petsc-5zlcDX/config.packages.MPI/libconftest.so -shared /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicxx -o /tmp/petsc-5zlcDX/config.packages.MPI/libconftest.so -shared /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
sh: mpicc -c -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/buildbot/install/pylith_linux_i686_binbot/include /tmp/petsc-5zlcDX/config.packages.MPI/conftest.c
Executing: mpicc -c -o /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.headers -I/tmp/petsc-5zlcDX/PETSc.utilities.cacheDetails -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.libraries -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/buildbot/install/pylith_linux_i686_binbot/include /tmp/petsc-5zlcDX/config.packages.MPI/conftest.c
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
#ifdef __cplusplus
extern "C"
#endif
int checkInit(void) {
int isInitialized;
MPI_Initialized(&isInitialized);
if (isInitialized) MPI_Finalize();
return (int) isInitialized;
}
Pushing language C
Popping language C
sh: mpicxx -o /tmp/petsc-5zlcDX/config.packages.MPI/libconftest.so -shared /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicxx -o /tmp/petsc-5zlcDX/config.packages.MPI/libconftest.so -shared /tmp/petsc-5zlcDX/config.packages.MPI/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdio.h>
#include <stdlib.h>
#ifdef PETSC_HAVE_DLFCN_H
#include <dlfcn.h>
#endif
int main() {
int argc = 1;
char *argv[2] = {(char *) "conftest", NULL};
void *lib;
int (*init)(int, char **);
int (*checkInit)(void);
lib = dlopen("/tmp/petsc-5zlcDX/config.libraries/lib1.so", RTLD_LAZY);
if (!lib) {
fprintf(stderr, "Could not open lib1.so: %s\n", dlerror());
exit(1);
}
init = (int (*)(int, char **)) dlsym(lib, "init");
if (!init) {
fprintf(stderr, "Could not find initialization function\n");
exit(1);
}
if (!(*init)(argc, argv)) {
fprintf(stderr, "Could not initialize library\n");
exit(1);
}
lib = dlopen("/tmp/petsc-5zlcDX/config.libraries/lib2.so", RTLD_LAZY);
if (!lib) {
fprintf(stderr, "Could not open lib2.so: %s\n", dlerror());
exit(1);
}
checkInit = (int (*)(void)) dlsym(lib, "checkInit");
if (!checkInit) {
fprintf(stderr, "Could not find initialization check function\n");
exit(1);
}
if (!(*checkInit)()) {
fprintf(stderr, "Did not link with shared library\n");
exit(2);
}
;
return 0;
}
Pushing language CXX
Popping language CXX
sh: mpicxx -o /tmp/petsc-5zlcDX/config.libraries/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl -ldl
Executing: mpicxx -o /tmp/petsc-5zlcDX/config.libraries/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl -ldl
sh:
Executing: /home/buildbot/install/pylith_linux_i686_binbot/bin/mpiexec /tmp/petsc-5zlcDX/config.libraries/conftest
sh: /home/buildbot/install/pylith_linux_i686_binbot/bin/mpiexec /tmp/petsc-5zlcDX/config.libraries/conftest
Executing: /home/buildbot/install/pylith_linux_i686_binbot/bin/mpiexec /tmp/petsc-5zlcDX/config.libraries/conftest
sh:
Library was shared
Popping language Cxx
Pushing language Cxx
================================================================================
TEST configureLibrary from config.packages.hdf5(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/packages/hdf5.py:113)
TESTING: configureLibrary from config.packages.hdf5(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/packages/hdf5.py:113)
==================================================================================
Checking for a functional hdf5
Checking for library in User specified root directory HDF5: ['/home/buildbot/install/pylith_linux_i686_binbot/lib/libhdf5_fortran.a', 'libhdf5.a', 'libz.a']
Contents: ['bin', 'include', 'setup.sh', 'etc', 'share', 'conf', 'src', 'libexec', 'lib']
================================================================================
TEST check from config.libraries(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/libraries.py:133)
TESTING: check from config.libraries(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/libraries.py:133)
Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName"
- libDir may be a list of directories
- libName may be a list of library names
Checking for function H5T_init in library ['/home/buildbot/install/pylith_linux_i686_binbot/lib/libhdf5_fortran.a', 'libhdf5.a', 'libz.a'] ['libm.a']
Pushing language Cxx
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
char H5T_init();
#ifdef __cplusplus
}
#endif
int main() {
H5T_init()
;
return 0;
}
Pushing language CXX
Popping language CXX
sh: mpicxx -o /tmp/petsc-5zlcDX/config.libraries/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -lhdf5_fortran -lhdf5 -lz -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicxx -o /tmp/petsc-5zlcDX/config.libraries/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -lhdf5_fortran -lhdf5 -lz -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_LIBHDF5_FORTRAN" to "1"
Defined "HAVE_LIBHDF5" to "1"
Defined "HAVE_LIBZ" to "1"
Popping language Cxx
Checking for headers User specified root directory HDF5: ['/home/buildbot/install/pylith_linux_i686_binbot/include']
Pushing language Cxx
================================================================================
TEST checkInclude from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:86)
TESTING: checkInclude from config.headers(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/headers.py:86)
Checks if a particular include file can be found along particular include paths
Checking for header files ['hdf5.h'] in ['/home/buildbot/install/pylith_linux_i686_binbot/include']
Checking include with compiler flags var CPPFLAGS
sh: mpicxx -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers -I/home/buildbot/install/pylith_linux_i686_binbot/include -I/home/buildbot/install/pylith_linux_i686_binbot/include /tmp/petsc-5zlcDX/config.headers/conftest.cc
Executing: mpicxx -E -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.headers -I/home/buildbot/install/pylith_linux_i686_binbot/include -I/home/buildbot/install/pylith_linux_i686_binbot/include /tmp/petsc-5zlcDX/config.headers/conftest.cc
sh: # 1 "/tmp/petsc-5zlcDX/config.headers/conftest.cc"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/tmp/petsc-5zlcDX/config.headers/conftest.cc"
# 1 "/tmp/petsc-5zlcDX/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-5zlcDX/config.headers/conftest.cc" 2
# 1 "/tmp/petsc-5zlcDX/config.headers/conffix.h" 1
extern "C" {
}
# 3 "/tmp/petsc-5zlcDX/config.headers/conftest.cc" 2
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/include/hdf5.h" 1 3
# 24 "/home/buildbot/install/pylith_linux_i686_binbot/include/hdf5.h" 3
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/include/H5public.h" 1 3
# 31 "/home/buildbot/install/pylith_linux_i686_binbot/include/H5public.h" 3
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/include/H5pubconf.h" 1 3
# 32 "/home/buildbot/install/pylith_linux_i686_binbot/include/H5public.h" 2 3
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/include/H5version.h" 1 3
# 35 "/home/buildbot/install/pylith_linux_i686_binbot/include/H5public.h" 2 3
# 1 "/usr/include/features.h" 1 3 4
# 330 "/usr/include/features.h" 3 4
# 1 "/usr/include/sys/cdefs.h" 1 3 4
# 348 "/usr/include/sys/cdefs.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 349 "/usr/include/sys/cdefs.h" 2 3 4
# 331 "/usr/include/features.h" 2 3 4
# 354 "/usr/include/features.h" 3 4
# 1 "/usr/include/gnu/stubs.h" 1 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 5 "/usr/include/gnu/stubs.h" 2 3 4
# 1 "/usr/include/gnu/stubs-32.h" 1 3 4
# 8 "/usr/include/gnu/stubs.h" 2 3 4
# 355 "/usr/include/features.h" 2 3 4
# 38 "/home/buildbot/install/pylith_linux_i686_binbot/include/H5public.h" 2 3
# 1 "/usr/include/sys/types.h" 1 3 4
# 29 "/usr/include/sys/types.h" 3 4
extern "C" {
# 1 "/usr/include/bits/types.h" 1 3 4
# 28 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/bits/types.h" 2 3 4
typedef unsigned char __u_char;
typedef unsigned short int __u_short;
typedef unsigned int __u_int;
typedef unsigned long int __u_long;
typedef signed char __int8_t;
typedef unsigned char __uint8_t;
typedef signed short int __int16_t;
typedef unsigned short int __uint16_t;
typedef signed int __int32_t;
typedef unsigned int __uint32_t;
__extension__ typedef signed long long int __int64_t;
__extension__ typedef unsigned long long int __uint64_t;
__extension__ typedef long long int __quad_t;
__extension__ typedef unsigned long long int __u_quad_t;
# 131 "/usr/include/bits/types.h" 3 4
# 1 "/usr/include/bits/typesizes.h" 1 3 4
# 132 "/usr/include/bits/types.h" 2 3 4
__extension__ typedef __u_quad_t __dev_t;
__extension__ typedef unsigned int __uid_t;
__extension__ typedef unsigned int __gid_t;
__extension__ typedef unsigned long int __ino_t;
__extension__ typedef __u_quad_t __ino64_t;
__extension__ typedef unsigned int __mode_t;
__extension__ typedef unsigned int __nlink_t;
__extension__ typedef long int __off_t;
__extension__ typedef __quad_t __off64_t;
__extension__ typedef int __pid_t;
__extension__ typedef struct { int __val[2]; } __fsid_t;
__extension__ typedef long int __clock_t;
__extension__ typedef unsigned long int __rlim_t;
__extension__ typedef __u_quad_t __rlim64_t;
__extension__ typedef unsigned int __id_t;
__extension__ typedef long int __time_t;
__extension__ typedef unsigned int __useconds_t;
__extension__ typedef long int __suseconds_t;
__extension__ typedef int __daddr_t;
__extension__ typedef long int __swblk_t;
__extension__ typedef int __key_t;
__extension__ typedef int __clockid_t;
__extension__ typedef void * __timer_t;
__extension__ typedef long int __blksize_t;
__extension__ typedef long int __blkcnt_t;
__extension__ typedef __quad_t __blkcnt64_t;
__extension__ typedef unsigned long int __fsblkcnt_t;
__extension__ typedef __u_quad_t __fsblkcnt64_t;
__extension__ typedef unsigned long int __fsfilcnt_t;
__extension__ typedef __u_quad_t __fsfilcnt64_t;
__extension__ typedef int __ssize_t;
typedef __off64_t __loff_t;
typedef __quad_t *__qaddr_t;
typedef char *__caddr_t;
__extension__ typedef int __intptr_t;
__extension__ typedef unsigned int __socklen_t;
# 32 "/usr/include/sys/types.h" 2 3 4
typedef __u_char u_char;
typedef __u_short u_short;
typedef __u_int u_int;
typedef __u_long u_long;
typedef __quad_t quad_t;
typedef __u_quad_t u_quad_t;
typedef __fsid_t fsid_t;
typedef __loff_t loff_t;
typedef __ino_t ino_t;
typedef __ino64_t ino64_t;
typedef __dev_t dev_t;
typedef __gid_t gid_t;
typedef __mode_t mode_t;
typedef __nlink_t nlink_t;
typedef __uid_t uid_t;
typedef __off_t off_t;
typedef __off64_t off64_t;
typedef __pid_t pid_t;
typedef __id_t id_t;
typedef __ssize_t ssize_t;
typedef __daddr_t daddr_t;
typedef __caddr_t caddr_t;
typedef __key_t key_t;
# 133 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/time.h" 1 3 4
# 59 "/usr/include/time.h" 3 4
typedef __clock_t clock_t;
# 75 "/usr/include/time.h" 3 4
typedef __time_t time_t;
# 93 "/usr/include/time.h" 3 4
typedef __clockid_t clockid_t;
# 105 "/usr/include/time.h" 3 4
typedef __timer_t timer_t;
# 134 "/usr/include/sys/types.h" 2 3 4
typedef __useconds_t useconds_t;
typedef __suseconds_t suseconds_t;
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 211 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef unsigned int size_t;
# 148 "/usr/include/sys/types.h" 2 3 4
typedef unsigned long int ulong;
typedef unsigned short int ushort;
typedef unsigned int uint;
# 195 "/usr/include/sys/types.h" 3 4
typedef int int8_t __attribute__ ((__mode__ (__QI__)));
typedef int int16_t __attribute__ ((__mode__ (__HI__)));
typedef int int32_t __attribute__ ((__mode__ (__SI__)));
typedef int int64_t __attribute__ ((__mode__ (__DI__)));
typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__)));
typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__)));
typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__)));
typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__)));
typedef int register_t __attribute__ ((__mode__ (__word__)));
# 217 "/usr/include/sys/types.h" 3 4
# 1 "/usr/include/endian.h" 1 3 4
# 37 "/usr/include/endian.h" 3 4
# 1 "/usr/include/bits/endian.h" 1 3 4
# 38 "/usr/include/endian.h" 2 3 4
# 218 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/select.h" 1 3 4
# 31 "/usr/include/sys/select.h" 3 4
# 1 "/usr/include/bits/select.h" 1 3 4
# 32 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/sigset.h" 1 3 4
# 24 "/usr/include/bits/sigset.h" 3 4
typedef int __sig_atomic_t;
typedef struct
{
unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))];
} __sigset_t;
# 35 "/usr/include/sys/select.h" 2 3 4
typedef __sigset_t sigset_t;
# 1 "/usr/include/time.h" 1 3 4
# 121 "/usr/include/time.h" 3 4
struct timespec
{
__time_t tv_sec;
long int tv_nsec;
};
# 45 "/usr/include/sys/select.h" 2 3 4
# 1 "/usr/include/bits/time.h" 1 3 4
# 69 "/usr/include/bits/time.h" 3 4
struct timeval
{
__time_t tv_sec;
__suseconds_t tv_usec;
};
# 47 "/usr/include/sys/select.h" 2 3 4
# 55 "/usr/include/sys/select.h" 3 4
typedef long int __fd_mask;
# 67 "/usr/include/sys/select.h" 3 4
typedef struct
{
__fd_mask fds_bits[1024 / (8 * sizeof (__fd_mask))];
} fd_set;
typedef __fd_mask fd_mask;
# 99 "/usr/include/sys/select.h" 3 4
extern "C" {
# 109 "/usr/include/sys/select.h" 3 4
extern int select (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
struct timeval *__restrict __timeout);
# 121 "/usr/include/sys/select.h" 3 4
extern int pselect (int __nfds, fd_set *__restrict __readfds,
fd_set *__restrict __writefds,
fd_set *__restrict __exceptfds,
const struct timespec *__restrict __timeout,
const __sigset_t *__restrict __sigmask);
}
# 221 "/usr/include/sys/types.h" 2 3 4
# 1 "/usr/include/sys/sysmacros.h" 1 3 4
# 30 "/usr/include/sys/sysmacros.h" 3 4
__extension__
extern unsigned int gnu_dev_major (unsigned long long int __dev)
throw ();
__extension__
extern unsigned int gnu_dev_minor (unsigned long long int __dev)
throw ();
__extension__
extern unsigned long long int gnu_dev_makedev (unsigned int __major,
unsigned int __minor)
throw ();
# 224 "/usr/include/sys/types.h" 2 3 4
typedef __blksize_t blksize_t;
typedef __blkcnt_t blkcnt_t;
typedef __fsblkcnt_t fsblkcnt_t;
typedef __fsfilcnt_t fsfilcnt_t;
# 262 "/usr/include/sys/types.h" 3 4
typedef __blkcnt64_t blkcnt64_t;
typedef __fsblkcnt64_t fsblkcnt64_t;
typedef __fsfilcnt64_t fsfilcnt64_t;
# 1 "/usr/include/bits/pthreadtypes.h" 1 3 4
# 23 "/usr/include/bits/pthreadtypes.h" 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 24 "/usr/include/bits/pthreadtypes.h" 2 3 4
# 50 "/usr/include/bits/pthreadtypes.h" 3 4
typedef unsigned long int pthread_t;
typedef union
{
char __size[36];
long int __align;
} pthread_attr_t;
# 67 "/usr/include/bits/pthreadtypes.h" 3 4
typedef struct __pthread_internal_slist
{
struct __pthread_internal_slist *__next;
} __pthread_slist_t;
typedef union
{
struct __pthread_mutex_s
{
int __lock;
unsigned int __count;
int __owner;
int __kind;
unsigned int __nusers;
__extension__ union
{
int __spins;
__pthread_slist_t __list;
};
} __data;
char __size[24];
long int __align;
} pthread_mutex_t;
typedef union
{
char __size[4];
int __align;
} pthread_mutexattr_t;
typedef union
{
struct
{
int __lock;
unsigned int __futex;
__extension__ unsigned long long int __total_seq;
__extension__ unsigned long long int __wakeup_seq;
__extension__ unsigned long long int __woken_seq;
void *__mutex;
unsigned int __nwaiters;
unsigned int __broadcast_seq;
} __data;
char __size[48];
__extension__ long long int __align;
} pthread_cond_t;
typedef union
{
char __size[4];
int __align;
} pthread_condattr_t;
typedef unsigned int pthread_key_t;
typedef int pthread_once_t;
typedef union
{
# 170 "/usr/include/bits/pthreadtypes.h" 3 4
struct
{
int __lock;
unsigned int __nr_readers;
unsigned int __readers_wakeup;
unsigned int __writer_wakeup;
unsigned int __nr_readers_queued;
unsigned int __nr_writers_queued;
unsigned char __flags;
unsigned char __shared;
unsigned char __pad1;
unsigned char __pad2;
int __writer;
} __data;
char __size[32];
long int __align;
} pthread_rwlock_t;
typedef union
{
char __size[8];
long int __align;
} pthread_rwlockattr_t;
typedef volatile int pthread_spinlock_t;
typedef union
{
char __size[20];
long int __align;
} pthread_barrier_t;
typedef union
{
char __size[4];
int __align;
} pthread_barrierattr_t;
# 271 "/usr/include/sys/types.h" 2 3 4
}
# 41 "/home/buildbot/install/pylith_linux_i686_binbot/include/H5public.h" 2 3
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 1 3 4
# 34 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/syslimits.h" 1 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 1 3 4
# 169 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 3 4
# 1 "/usr/include/limits.h" 1 3 4
# 145 "/usr/include/limits.h" 3 4
# 1 "/usr/include/bits/posix1_lim.h" 1 3 4
# 153 "/usr/include/bits/posix1_lim.h" 3 4
# 1 "/usr/include/bits/local_lim.h" 1 3 4
# 36 "/usr/include/bits/local_lim.h" 3 4
# 1 "/usr/include/linux/limits.h" 1 3 4
# 37 "/usr/include/bits/local_lim.h" 2 3 4
# 154 "/usr/include/bits/posix1_lim.h" 2 3 4
# 146 "/usr/include/limits.h" 2 3 4
# 1 "/usr/include/bits/posix2_lim.h" 1 3 4
# 150 "/usr/include/limits.h" 2 3 4
# 1 "/usr/include/bits/xopen_lim.h" 1 3 4
# 34 "/usr/include/bits/xopen_lim.h" 3 4
# 1 "/usr/include/bits/stdio_lim.h" 1 3 4
# 35 "/usr/include/bits/xopen_lim.h" 2 3 4
# 154 "/usr/include/limits.h" 2 3 4
# 170 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 2 3 4
# 8 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/syslimits.h" 2 3 4
# 35 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include-fixed/limits.h" 2 3 4
# 44 "/home/buildbot/install/pylith_linux_i686_binbot/include/H5public.h" 2 3
# 55 "/home/buildbot/install/pylith_linux_i686_binbot/include/H5public.h" 3
# 1 "/usr/include/inttypes.h" 1 3 4
# 28 "/usr/include/inttypes.h" 3 4
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stdint.h" 1 3 4
# 1 "/usr/include/stdint.h" 1 3 4
# 27 "/usr/include/stdint.h" 3 4
# 1 "/usr/include/bits/wchar.h" 1 3 4
# 28 "/usr/include/stdint.h" 2 3 4
# 1 "/usr/include/bits/wordsize.h" 1 3 4
# 29 "/usr/include/stdint.h" 2 3 4
# 49 "/usr/include/stdint.h" 3 4
typedef unsigned char uint8_t;
typedef unsigned short int uint16_t;
typedef unsigned int uint32_t;
__extension__
typedef unsigned long long int uint64_t;
typedef signed char int_least8_t;
typedef short int int_least16_t;
typedef int int_least32_t;
__extension__
typedef long long int int_least64_t;
typedef unsigned char uint_least8_t;
typedef unsigned short int uint_least16_t;
typedef unsigned int uint_least32_t;
__extension__
typedef unsigned long long int uint_least64_t;
typedef signed char int_fast8_t;
typedef int int_fast16_t;
typedef int int_fast32_t;
__extension__
typedef long long int int_fast64_t;
typedef unsigned char uint_fast8_t;
typedef unsigned int uint_fast16_t;
typedef unsigned int uint_fast32_t;
__extension__
typedef unsigned long long int uint_fast64_t;
# 126 "/usr/include/stdint.h" 3 4
typedef int intptr_t;
typedef unsigned int uintptr_t;
# 138 "/usr/include/stdint.h" 3 4
__extension__
typedef long long int intmax_t;
__extension__
typedef unsigned long long int uintmax_t;
# 4 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stdint.h" 2 3 4
# 29 "/usr/include/inttypes.h" 2 3 4
# 274 "/usr/include/inttypes.h" 3 4
extern "C" {
# 288 "/usr/include/inttypes.h" 3 4
typedef struct
{
long long int quot;
long long int rem;
} imaxdiv_t;
extern intmax_t imaxabs (intmax_t __n) throw () __attribute__ ((__const__));
extern imaxdiv_t imaxdiv (intmax_t __numer, intmax_t __denom)
throw () __attribute__ ((__const__));
extern intmax_t strtoimax (__const char *__restrict __nptr,
char **__restrict __endptr, int __base) throw ();
extern uintmax_t strtoumax (__const char *__restrict __nptr,
char ** __restrict __endptr, int __base) throw ();
extern intmax_t wcstoimax (__const wchar_t *__restrict __nptr,
wchar_t **__restrict __endptr, int __base)
throw ();
extern uintmax_t wcstoumax (__const wchar_t *__restrict __nptr,
wchar_t ** __restrict __endptr, int __base)
throw ();
# 442 "/usr/include/inttypes.h" 3 4
}
# 56 "/home/buildbot/install/pylith_linux_i686_binbot/include/H5public.h" 2 3
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 1 3 4
# 149 "/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2/include/stddef.h" 3 4
typedef int ptrdiff_t;
# 59 "/home/buildbot/install/pylith_linux_i686_binbot/include/H5public.h" 2 3
# 1 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 1 3
# 14 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
extern "C" {
# 23 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
typedef int MPI_Datatype;
# 124 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
typedef int MPI_Comm;
typedef int MPI_Group;
typedef int MPI_Win;
typedef struct ADIOI_FileD *MPI_File;
typedef int MPI_Op;
# 210 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
typedef enum MPIR_Topo_type { MPI_GRAPH=1, MPI_CART=2, MPI_DIST_GRAPH=3 } MPIR_Topo_type;
# 224 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
typedef void (MPI_Handler_function) ( MPI_Comm *, int *, ... );
typedef int (MPI_Comm_copy_attr_function)(MPI_Comm, int, void *, void *,
void *, int *);
typedef int (MPI_Comm_delete_attr_function)(MPI_Comm, int, void *, void *);
typedef int (MPI_Type_copy_attr_function)(MPI_Datatype, int, void *, void *,
void *, int *);
typedef int (MPI_Type_delete_attr_function)(MPI_Datatype, int, void *, void *);
typedef int (MPI_Win_copy_attr_function)(MPI_Win, int, void *, void *, void *,
int *);
typedef int (MPI_Win_delete_attr_function)(MPI_Win, int, void *, void *);
typedef void (MPI_Comm_errhandler_function)(MPI_Comm *, int *, ...);
typedef void (MPI_File_errhandler_function)(MPI_File *, int *, ...);
typedef void (MPI_Win_errhandler_function)(MPI_Win *, int *, ...);
typedef MPI_Comm_errhandler_function MPI_Comm_errhandler_fn;
typedef MPI_File_errhandler_function MPI_File_errhandler_fn;
typedef MPI_Win_errhandler_function MPI_Win_errhandler_fn;
# 252 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
typedef int MPI_Errhandler;
# 273 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
typedef int MPI_Request;
typedef void (MPI_User_function) ( void *, void *, int *, MPI_Datatype * );
typedef int (MPI_Copy_function) ( MPI_Comm, int, void *, void *, void *, int * );
typedef int (MPI_Delete_function) ( MPI_Comm, int, void *, void * );
# 324 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
enum MPIR_Combiner_enum {
MPI_COMBINER_NAMED = 1,
MPI_COMBINER_DUP = 2,
MPI_COMBINER_CONTIGUOUS = 3,
MPI_COMBINER_VECTOR = 4,
MPI_COMBINER_HVECTOR_INTEGER = 5,
MPI_COMBINER_HVECTOR = 6,
MPI_COMBINER_INDEXED = 7,
MPI_COMBINER_HINDEXED_INTEGER = 8,
MPI_COMBINER_HINDEXED = 9,
MPI_COMBINER_INDEXED_BLOCK = 10,
MPI_COMBINER_STRUCT_INTEGER = 11,
MPI_COMBINER_STRUCT = 12,
MPI_COMBINER_SUBARRAY = 13,
MPI_COMBINER_DARRAY = 14,
MPI_COMBINER_F90_REAL = 15,
MPI_COMBINER_F90_COMPLEX = 16,
MPI_COMBINER_F90_INTEGER = 17,
MPI_COMBINER_RESIZED = 18
};
typedef int MPI_Info;
# 369 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
typedef int MPI_Aint;
typedef int MPI_Fint;
# 382 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
typedef long long MPI_Offset;
typedef struct MPI_Status {
int count;
int cancelled;
int MPI_SOURCE;
int MPI_TAG;
int MPI_ERROR;
} MPI_Status;
# 438 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
extern MPI_Fint * MPI_F_STATUS_IGNORE;
extern MPI_Fint * MPI_F_STATUSES_IGNORE;
# 457 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
typedef int (MPI_Grequest_cancel_function)(void *, int);
typedef int (MPI_Grequest_free_function)(void *);
typedef int (MPI_Grequest_query_function)(void *, MPI_Status *);
# 543 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
typedef int (MPI_Datarep_conversion_function)(void *, MPI_Datatype, int,
void *, MPI_Offset, void *);
typedef int (MPI_Datarep_extent_function)(MPI_Datatype datatype, MPI_Aint *,
void *);
# 566 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
int MPI_Send(void*, int, MPI_Datatype, int, int, MPI_Comm);
int MPI_Recv(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Status *);
int MPI_Get_count(MPI_Status *, MPI_Datatype, int *);
int MPI_Bsend(void*, int, MPI_Datatype, int, int, MPI_Comm);
int MPI_Ssend(void*, int, MPI_Datatype, int, int, MPI_Comm);
int MPI_Rsend(void*, int, MPI_Datatype, int, int, MPI_Comm);
int MPI_Buffer_attach( void*, int);
int MPI_Buffer_detach( void*, int *);
int MPI_Isend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int MPI_Ibsend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int MPI_Issend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int MPI_Irsend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int MPI_Irecv(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int MPI_Wait(MPI_Request *, MPI_Status *);
int MPI_Test(MPI_Request *, int *, MPI_Status *);
int MPI_Request_free(MPI_Request *);
int MPI_Waitany(int, MPI_Request *, int *, MPI_Status *);
int MPI_Testany(int, MPI_Request *, int *, int *, MPI_Status *);
int MPI_Waitall(int, MPI_Request *, MPI_Status *);
int MPI_Testall(int, MPI_Request *, int *, MPI_Status *);
int MPI_Waitsome(int, MPI_Request *, int *, int *, MPI_Status *);
int MPI_Testsome(int, MPI_Request *, int *, int *, MPI_Status *);
int MPI_Iprobe(int, int, MPI_Comm, int *, MPI_Status *);
int MPI_Probe(int, int, MPI_Comm, MPI_Status *);
int MPI_Cancel(MPI_Request *);
int MPI_Test_cancelled(MPI_Status *, int *);
int MPI_Send_init(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int MPI_Bsend_init(void*, int, MPI_Datatype, int,int, MPI_Comm, MPI_Request *);
int MPI_Ssend_init(void*, int, MPI_Datatype, int,int, MPI_Comm, MPI_Request *);
int MPI_Rsend_init(void*, int, MPI_Datatype, int,int, MPI_Comm, MPI_Request *);
int MPI_Recv_init(void*, int, MPI_Datatype, int,int, MPI_Comm, MPI_Request *);
int MPI_Start(MPI_Request *);
int MPI_Startall(int, MPI_Request *);
int MPI_Sendrecv(void *, int, MPI_Datatype,int, int, void *, int, MPI_Datatype, int, int, MPI_Comm, MPI_Status *);
int MPI_Sendrecv_replace(void*, int, MPI_Datatype, int, int, int, int, MPI_Comm, MPI_Status *);
int MPI_Type_contiguous(int, MPI_Datatype, MPI_Datatype *);
int MPI_Type_vector(int, int, int, MPI_Datatype, MPI_Datatype *);
int MPI_Type_hvector(int, int, MPI_Aint, MPI_Datatype, MPI_Datatype *);
int MPI_Type_indexed(int, int *, int *, MPI_Datatype, MPI_Datatype *);
int MPI_Type_hindexed(int, int *, MPI_Aint *, MPI_Datatype, MPI_Datatype *);
int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, MPI_Datatype *);
int MPI_Address(void*, MPI_Aint *);
int MPI_Type_extent(MPI_Datatype, MPI_Aint *);
int MPI_Type_size(MPI_Datatype, int *);
int MPI_Type_lb(MPI_Datatype, MPI_Aint *);
int MPI_Type_ub(MPI_Datatype, MPI_Aint *);
int MPI_Type_commit(MPI_Datatype *);
int MPI_Type_free(MPI_Datatype *);
int MPI_Get_elements(MPI_Status *, MPI_Datatype, int *);
int MPI_Pack(void*, int, MPI_Datatype, void *, int, int *, MPI_Comm);
int MPI_Unpack(void*, int, int *, void *, int, MPI_Datatype, MPI_Comm);
int MPI_Pack_size(int, MPI_Datatype, MPI_Comm, int *);
int MPI_Barrier(MPI_Comm );
int MPI_Bcast(void*, int, MPI_Datatype, int, MPI_Comm );
int MPI_Gather(void* , int, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm);
int MPI_Gatherv(void* , int, MPI_Datatype, void*, int *, int *, MPI_Datatype, int, MPI_Comm);
int MPI_Scatter(void* , int, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm);
int MPI_Scatterv(void* , int *, int *, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm);
int MPI_Allgather(void* , int, MPI_Datatype, void*, int, MPI_Datatype, MPI_Comm);
int MPI_Allgatherv(void* , int, MPI_Datatype, void*, int *, int *, MPI_Datatype, MPI_Comm);
int MPI_Alltoall(void* , int, MPI_Datatype, void*, int, MPI_Datatype, MPI_Comm);
int MPI_Alltoallv(void* , int *, int *, MPI_Datatype, void*, int *, int *, MPI_Datatype, MPI_Comm);
int MPI_Reduce(void* , void*, int, MPI_Datatype, MPI_Op, int, MPI_Comm);
int MPI_Op_create(MPI_User_function *, int, MPI_Op *);
int MPI_Op_free( MPI_Op *);
int MPI_Allreduce(void* , void*, int, MPI_Datatype, MPI_Op, MPI_Comm);
int MPI_Reduce_scatter(void* , void*, int *, MPI_Datatype, MPI_Op, MPI_Comm);
int MPI_Scan(void* , void*, int, MPI_Datatype, MPI_Op, MPI_Comm );
int MPI_Group_size(MPI_Group, int *);
int MPI_Group_rank(MPI_Group, int *);
int MPI_Group_translate_ranks (MPI_Group, int, int *, MPI_Group, int *);
int MPI_Group_compare(MPI_Group, MPI_Group, int *);
int MPI_Comm_group(MPI_Comm, MPI_Group *);
int MPI_Group_union(MPI_Group, MPI_Group, MPI_Group *);
int MPI_Group_intersection(MPI_Group, MPI_Group, MPI_Group *);
int MPI_Group_difference(MPI_Group, MPI_Group, MPI_Group *);
int MPI_Group_incl(MPI_Group, int, int *, MPI_Group *);
int MPI_Group_excl(MPI_Group, int, int *, MPI_Group *);
int MPI_Group_range_incl(MPI_Group, int, int [][3], MPI_Group *);
int MPI_Group_range_excl(MPI_Group, int, int [][3], MPI_Group *);
int MPI_Group_free(MPI_Group *);
int MPI_Comm_size(MPI_Comm, int *);
int MPI_Comm_rank(MPI_Comm, int *);
int MPI_Comm_compare(MPI_Comm, MPI_Comm, int *);
int MPI_Comm_dup(MPI_Comm, MPI_Comm *);
int MPI_Comm_create(MPI_Comm, MPI_Group, MPI_Comm *);
int MPI_Comm_split(MPI_Comm, int, int, MPI_Comm *);
int MPI_Comm_free(MPI_Comm *);
int MPI_Comm_test_inter(MPI_Comm, int *);
int MPI_Comm_remote_size(MPI_Comm, int *);
int MPI_Comm_remote_group(MPI_Comm, MPI_Group *);
int MPI_Intercomm_create(MPI_Comm, int, MPI_Comm, int, int, MPI_Comm * );
int MPI_Intercomm_merge(MPI_Comm, int, MPI_Comm *);
int MPI_Keyval_create(MPI_Copy_function *, MPI_Delete_function *, int *, void*);
int MPI_Keyval_free(int *);
int MPI_Attr_put(MPI_Comm, int, void*);
int MPI_Attr_get(MPI_Comm, int, void *, int *);
int MPI_Attr_delete(MPI_Comm, int);
int MPI_Topo_test(MPI_Comm, int *);
int MPI_Cart_create(MPI_Comm, int, int *, int *, int, MPI_Comm *);
int MPI_Dims_create(int, int, int *);
int MPI_Graph_create(MPI_Comm, int, int *, int *, int, MPI_Comm *);
int MPI_Graphdims_get(MPI_Comm, int *, int *);
int MPI_Graph_get(MPI_Comm, int, int, int *, int *);
int MPI_Cartdim_get(MPI_Comm, int *);
int MPI_Cart_get(MPI_Comm, int, int *, int *, int *);
int MPI_Cart_rank(MPI_Comm, int *, int *);
int MPI_Cart_coords(MPI_Comm, int, int, int *);
int MPI_Graph_neighbors_count(MPI_Comm, int, int *);
int MPI_Graph_neighbors(MPI_Comm, int, int, int *);
int MPI_Cart_shift(MPI_Comm, int, int, int *, int *);
int MPI_Cart_sub(MPI_Comm, int *, MPI_Comm *);
int MPI_Cart_map(MPI_Comm, int, int *, int *, int *);
int MPI_Graph_map(MPI_Comm, int, int *, int *, int *);
int MPI_Get_processor_name(char *, int *);
int MPI_Get_version(int *, int *);
int MPI_Errhandler_create(MPI_Handler_function *, MPI_Errhandler *);
int MPI_Errhandler_set(MPI_Comm, MPI_Errhandler);
int MPI_Errhandler_get(MPI_Comm, MPI_Errhandler *);
int MPI_Errhandler_free(MPI_Errhandler *);
int MPI_Error_string(int, char *, int *);
int MPI_Error_class(int, int *);
double MPI_Wtime(void);
double MPI_Wtick(void);
double PMPI_Wtime(void);
double PMPI_Wtick(void);
int MPI_Init(int *, char ***);
int MPI_Finalize(void);
int MPI_Initialized(int *);
int MPI_Abort(MPI_Comm, int);
int MPI_Pcontrol(const int, ...);
int MPIR_Dup_fn ( MPI_Comm, int, void *, void *, void *, int * );
int MPI_Close_port(char *);
int MPI_Comm_accept(char *, MPI_Info, int, MPI_Comm, MPI_Comm *);
int MPI_Comm_connect(char *, MPI_Info, int, MPI_Comm, MPI_Comm *);
int MPI_Comm_disconnect(MPI_Comm *);
int MPI_Comm_get_parent(MPI_Comm *);
int MPI_Comm_join(int, MPI_Comm *);
int MPI_Comm_spawn(char *, char *[], int, MPI_Info, int, MPI_Comm, MPI_Comm *,
int []);
int MPI_Comm_spawn_multiple(int, char *[], char **[], int [], MPI_Info [], int,
MPI_Comm, MPI_Comm *, int []);
int MPI_Lookup_name(char *, MPI_Info, char *);
int MPI_Open_port(MPI_Info, char *);
int MPI_Publish_name(char *, MPI_Info, char *);
int MPI_Unpublish_name(char *, MPI_Info, char *);
int MPI_Accumulate(void *, int, MPI_Datatype, int, MPI_Aint, int,
MPI_Datatype, MPI_Op, MPI_Win);
int MPI_Get(void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype,
MPI_Win);
int MPI_Put(void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype,
MPI_Win);
int MPI_Win_complete(MPI_Win);
int MPI_Win_create(void *, MPI_Aint, int, MPI_Info, MPI_Comm, MPI_Win *);
int MPI_Win_fence(int, MPI_Win);
int MPI_Win_free(MPI_Win *);
int MPI_Win_get_group(MPI_Win, MPI_Group *);
int MPI_Win_lock(int, int, int, MPI_Win);
int MPI_Win_post(MPI_Group, int, MPI_Win);
int MPI_Win_start(MPI_Group, int, MPI_Win);
int MPI_Win_test(MPI_Win, int *);
int MPI_Win_unlock(int, MPI_Win);
int MPI_Win_wait(MPI_Win);
int MPI_Alltoallw(void *, int [], int [], MPI_Datatype [], void *, int [],
int [], MPI_Datatype [], MPI_Comm);
int MPI_Exscan(void *, void *, int, MPI_Datatype, MPI_Op, MPI_Comm) ;
int MPI_Add_error_class(int *);
int MPI_Add_error_code(int, int *);
int MPI_Add_error_string(int, char *);
int MPI_Comm_call_errhandler(MPI_Comm, int);
int MPI_Comm_create_keyval(MPI_Comm_copy_attr_function *,
MPI_Comm_delete_attr_function *, int *, void *);
int MPI_Comm_delete_attr(MPI_Comm, int);
int MPI_Comm_free_keyval(int *);
int MPI_Comm_get_attr(MPI_Comm, int, void *, int *);
int MPI_Comm_get_name(MPI_Comm, char *, int *);
int MPI_Comm_set_attr(MPI_Comm, int, void *);
int MPI_Comm_set_name(MPI_Comm, char *);
int MPI_File_call_errhandler(MPI_File, int);
int MPI_Grequest_complete(MPI_Request);
int MPI_Grequest_start(MPI_Grequest_query_function *,
MPI_Grequest_free_function *,
MPI_Grequest_cancel_function *, void *, MPI_Request *);
int MPI_Init_thread(int *, char ***, int, int *);
int MPI_Is_thread_main(int *);
int MPI_Query_thread(int *);
int MPI_Status_set_cancelled(MPI_Status *, int);
int MPI_Status_set_elements(MPI_Status *, MPI_Datatype, int);
int MPI_Type_create_keyval(MPI_Type_copy_attr_function *,
MPI_Type_delete_attr_function *, int *, void *);
int MPI_Type_delete_attr(MPI_Datatype, int);
int MPI_Type_dup(MPI_Datatype, MPI_Datatype *);
int MPI_Type_free_keyval(int *);
int MPI_Type_get_attr(MPI_Datatype, int, void *, int *);
int MPI_Type_get_contents(MPI_Datatype, int, int, int, int [], MPI_Aint [],
MPI_Datatype []);
int MPI_Type_get_envelope(MPI_Datatype, int *, int *, int *, int *);
int MPI_Type_get_name(MPI_Datatype, char *, int *);
int MPI_Type_set_attr(MPI_Datatype, int, void *);
int MPI_Type_set_name(MPI_Datatype, char *);
int MPI_Type_match_size( int, int, MPI_Datatype *);
int MPI_Win_call_errhandler(MPI_Win, int);
int MPI_Win_create_keyval(MPI_Win_copy_attr_function *,
MPI_Win_delete_attr_function *, int *, void *);
int MPI_Win_delete_attr(MPI_Win, int);
int MPI_Win_free_keyval(int *);
int MPI_Win_get_attr(MPI_Win, int, void *, int *);
int MPI_Win_get_name(MPI_Win, char *, int *);
int MPI_Win_set_attr(MPI_Win, int, void *);
int MPI_Win_set_name(MPI_Win, char *);
# 820 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
int MPI_Alloc_mem(MPI_Aint, MPI_Info info, void *baseptr);
int MPI_Comm_create_errhandler(MPI_Comm_errhandler_function *, MPI_Errhandler *);
int MPI_Comm_get_errhandler(MPI_Comm, MPI_Errhandler *);
int MPI_Comm_set_errhandler(MPI_Comm, MPI_Errhandler);
int MPI_File_create_errhandler(MPI_File_errhandler_function *, MPI_Errhandler *);
int MPI_File_get_errhandler(MPI_File, MPI_Errhandler *);
int MPI_File_set_errhandler(MPI_File, MPI_Errhandler);
int MPI_Finalized(int *);
int MPI_Free_mem(void *);
int MPI_Get_address(void *, MPI_Aint *);
int MPI_Info_create(MPI_Info *);
int MPI_Info_delete(MPI_Info, char *);
int MPI_Info_dup(MPI_Info, MPI_Info *);
int MPI_Info_free(MPI_Info *info);
int MPI_Info_get(MPI_Info, char *, int, char *, int *);
int MPI_Info_get_nkeys(MPI_Info, int *);
int MPI_Info_get_nthkey(MPI_Info, int, char *);
int MPI_Info_get_valuelen(MPI_Info, char *, int *, int *);
int MPI_Info_set(MPI_Info, char *, char *);
int MPI_Pack_external(char *, void *, int, MPI_Datatype, void *, MPI_Aint,
MPI_Aint *);
int MPI_Pack_external_size(char *, int, MPI_Datatype, MPI_Aint *);
int MPI_Request_get_status(MPI_Request, int *, MPI_Status *);
int MPI_Status_c2f(MPI_Status *, MPI_Fint *);
int MPI_Status_f2c(MPI_Fint *, MPI_Status *);
int MPI_Type_create_darray(int, int, int, int [], int [], int [], int [], int,
MPI_Datatype, MPI_Datatype *);
int MPI_Type_create_hindexed(int, int [], MPI_Aint [], MPI_Datatype,
MPI_Datatype *);
int MPI_Type_create_hvector(int, int, MPI_Aint, MPI_Datatype, MPI_Datatype *);
int MPI_Type_create_indexed_block(int, int, int [], MPI_Datatype,
MPI_Datatype *);
int MPI_Type_create_resized(MPI_Datatype, MPI_Aint, MPI_Aint, MPI_Datatype *);
int MPI_Type_create_struct(int, int [], MPI_Aint [], MPI_Datatype [],
MPI_Datatype *);
int MPI_Type_create_subarray(int, int [], int [], int [], int, MPI_Datatype,
MPI_Datatype *);
int MPI_Type_get_extent(MPI_Datatype, MPI_Aint *, MPI_Aint *);
int MPI_Type_get_true_extent(MPI_Datatype, MPI_Aint *, MPI_Aint *);
int MPI_Unpack_external(char *, void *, MPI_Aint, MPI_Aint *, void *, int,
MPI_Datatype);
int MPI_Win_create_errhandler(MPI_Win_errhandler_function *, MPI_Errhandler *);
int MPI_Win_get_errhandler(MPI_Win, MPI_Errhandler *);
int MPI_Win_set_errhandler(MPI_Win, MPI_Errhandler);
int MPI_Type_create_f90_integer( int, MPI_Datatype * );
int MPI_Type_create_f90_real( int, int, MPI_Datatype * );
int MPI_Type_create_f90_complex( int, int, MPI_Datatype * );
int MPI_Reduce_local(void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op);
int MPI_Op_commutative(MPI_Op op, int *commute);
int MPI_Reduce_scatter_block(void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm);
int MPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, int [], int [], int outdegree, int [], int [], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph);
int MPI_Dist_graph_create(MPI_Comm comm_old, int n, int [], int [], int [], int [], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph);
int MPI_Dist_graph_neighbors_count(MPI_Comm comm, int *indegree, int *outdegree, int *weighted);
int MPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int [], int [], int maxoutdegree, int [], int []);
# 888 "/home/buildbot/install/pylith_linux_i686_binbot/include/mpi.h" 3
int PMPI_Send(void*, int, MPI_Datatype, int, int, MPI_Comm);
int PMPI_Recv(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Status *);
int PMPI_Get_count(MPI_Status *, MPI_Datatype, int *);
int PMPI_Bsend(void*, int, MPI_Datatype, int, int, MPI_Comm);
int PMPI_Ssend(void*, int, MPI_Datatype, int, int, MPI_Comm);
int PMPI_Rsend(void*, int, MPI_Datatype, int, int, MPI_Comm);
int PMPI_Buffer_attach( void* buffer, int);
int PMPI_Buffer_detach( void* buffer, int *);
int PMPI_Isend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int PMPI_Ibsend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int PMPI_Issend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int PMPI_Irsend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int PMPI_Irecv(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int PMPI_Wait(MPI_Request *, MPI_Status *);
int PMPI_Test(MPI_Request *, int *, MPI_Status *);
int PMPI_Request_free(MPI_Request *);
int PMPI_Waitany(int, MPI_Request *, int *, MPI_Status *);
int PMPI_Testany(int, MPI_Request *, int *, int *, MPI_Status *);
int PMPI_Waitall(int, MPI_Request *, MPI_Status *);
int PMPI_Testall(int, MPI_Request *, int *, MPI_Status *);
int PMPI_Waitsome(int, MPI_Request *, int *, int *, MPI_Status *);
int PMPI_Testsome(int, MPI_Request *, int *, int *, MPI_Status *);
int PMPI_Iprobe(int, int, MPI_Comm, int *, MPI_Status *);
int PMPI_Probe(int, int, MPI_Comm, MPI_Status *);
int PMPI_Cancel(MPI_Request *);
int PMPI_Test_cancelled(MPI_Status *, int *);
int PMPI_Send_init(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int PMPI_Bsend_init(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int PMPI_Ssend_init(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int PMPI_Rsend_init(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int PMPI_Recv_init(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *);
int PMPI_Start(MPI_Request *);
int PMPI_Startall(int, MPI_Request *);
int PMPI_Sendrecv(void *, int, MPI_Datatype, int, int, void *, int, MPI_Datatype, int, int, MPI_Comm, MPI_Status *);
int PMPI_Sendrecv_replace(void*, int, MPI_Datatype, int, int, int, int, MPI_Comm, MPI_Status *);
int PMPI_Type_contiguous(int, MPI_Datatype, MPI_Datatype *);
int PMPI_Type_vector(int, int, int, MPI_Datatype, MPI_Datatype *);
int PMPI_Type_hvector(int, int, MPI_Aint, MPI_Datatype, MPI_Datatype *);
int PMPI_Type_indexed(int, int *, int *, MPI_Datatype, MPI_Datatype *);
int PMPI_Type_hindexed(int, int *, MPI_Aint *, MPI_Datatype, MPI_Datatype *);
int PMPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, MPI_Datatype *);
int PMPI_Address(void*, MPI_Aint *);
int PMPI_Type_extent(MPI_Datatype, MPI_Aint *);
int PMPI_Type_size(MPI_Datatype, int *);
int PMPI_Type_lb(MPI_Datatype, MPI_Aint *);
int PMPI_Type_ub(MPI_Datatype, MPI_Aint *);
int PMPI_Type_commit(MPI_Datatype *);
int PMPI_Type_free(MPI_Datatype *);
int PMPI_Get_elements(MPI_Status *, MPI_Datatype, int *);
int PMPI_Pack(void*, int, MPI_Datatype, void *, int, int *, MPI_Comm);
int PMPI_Unpack(void*, int, int *, void *, int, MPI_Datatype, MPI_Comm);
int PMPI_Pack_size(int, MPI_Datatype, MPI_Comm, int *);
int PMPI_Barrier(MPI_Comm );
int PMPI_Bcast(void* buffer, int, MPI_Datatype, int, MPI_Comm );
int PMPI_Gather(void* , int, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm);
int PMPI_Gatherv(void* , int, MPI_Datatype, void*, int *, int *, MPI_Datatype, int, MPI_Comm);
int PMPI_Scatter(void* , int, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm);
int PMPI_Scatterv(void* , int *, int *displs, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm);
int PMPI_Allgather(void* , int, MPI_Datatype, void*, int, MPI_Datatype, MPI_Comm);
int PMPI_Allgatherv(void* , int, MPI_Datatype, void*, int *, int *, MPI_Datatype, MPI_Comm);
int PMPI_Alltoall(void* , int, MPI_Datatype, void*, int, MPI_Datatype, MPI_Comm);
int PMPI_Alltoallv(void* , int *, int *, MPI_Datatype, void*, int *, int *, MPI_Datatype, MPI_Comm);
int PMPI_Reduce(void* , void*, int, MPI_Datatype, MPI_Op, int, MPI_Comm);
int PMPI_Op_create(MPI_User_function *, int, MPI_Op *);
int PMPI_Op_free( MPI_Op *);
int PMPI_Allreduce(void* , void*, int, MPI_Datatype, MPI_Op, MPI_Comm);
int PMPI_Reduce_scatter(void* , void*, int *, MPI_Datatype, MPI_Op, MPI_Comm);
int PMPI_Scan(void* , void*, int, MPI_Datatype, MPI_Op, MPI_Comm );
int PMPI_Group_size(MPI_Group, int *);
int PMPI_Group_rank(MPI_Group, int *);
int PMPI_Group_translate_ranks (MPI_Group, int, int *, MPI_Group, int *);
int PMPI_Group_compare(MPI_Group, MPI_Group, int *);
int PMPI_Comm_group(MPI_Comm, MPI_Group *);
int PMPI_Group_union(MPI_Group, MPI_Group, MPI_Group *);
int PMPI_Group_intersection(MPI_Group, MPI_Group, MPI_Group *);
int PMPI_Group_difference(MPI_Group, MPI_Group, MPI_Group *);
int PMPI_Group_incl(MPI_Group, int, int *, MPI_Group *);
int PMPI_Group_excl(MPI_Group, int, int *, MPI_Group *);
int PMPI_Group_range_incl(MPI_Group, int, int [][3], MPI_Group *);
int PMPI_Group_range_excl(MPI_Group, int, int [][3], MPI_Group *);
int PMPI_Group_free(MPI_Group *);
int PMPI_Comm_size(MPI_Comm, int *);
int PMPI_Comm_rank(MPI_Comm, int *);
int PMPI_Comm_compare(MPI_Comm, MPI_Comm, int *);
int PMPI_Comm_dup(MPI_Comm, MPI_Comm *);
int PMPI_Comm_create(MPI_Comm, MPI_Group, MPI_Comm *);
int PMPI_Comm_split(MPI_Comm, int, int, MPI_Comm *);
int PMPI_Comm_free(MPI_Comm *);
int PMPI_Comm_test_inter(MPI_Comm, int *);
int PMPI_Comm_remote_size(MPI_Comm, int *);
int PMPI_Comm_remote_group(MPI_Comm, MPI_Group *);
int PMPI_Intercomm_create(MPI_Comm, int, MPI_Comm, int, int, MPI_Comm *);
int PMPI_Intercomm_merge(MPI_Comm, int, MPI_Comm *);
int PMPI_Keyval_create(MPI_Copy_function *, MPI_Delete_function *, int *, void*);
int PMPI_Keyval_free(int *);
int PMPI_Attr_put(MPI_Comm, int, void*);
int PMPI_Attr_get(MPI_Comm, int, void *, int *);
int PMPI_Attr_delete(MPI_Comm, int);
int PMPI_Topo_test(MPI_Comm, int *);
int PMPI_Cart_create(MPI_Comm, int, int *, int *, int, MPI_Comm *);
int PMPI_Dims_create(int, int, int *);
int PMPI_Graph_create(MPI_Comm, int, int *, int *, int, MPI_Comm *);
int PMPI_Graphdims_get(MPI_Comm, int *, int *);
int PMPI_Graph_get(MPI_Comm, int, int, int *, int *);
int PMPI_Cartdim_get(MPI_Comm, int *);
int PMPI_Cart_get(MPI_Comm, int, int *, int *, int *);
int PMPI_Cart_rank(MPI_Comm, int *, int *);
int PMPI_Cart_coords(MPI_Comm, int, int, int *);
int PMPI_Graph_neighbors_count(MPI_Comm, int, int *);
int PMPI_Graph_neighbors(MPI_Comm, int, int, int *);
int PMPI_Cart_shift(MPI_Comm, int, int, int *, int *);
int PMPI_Cart_sub(MPI_Comm, int *, MPI_Comm *);
int PMPI_Cart_map(MPI_Comm, int, int *, int *, int *);
int PMPI_Graph_map(MPI_Comm, int, int *, int *, int *);
int PMPI_Get_processor_name(char *, int *);
int PMPI_Get_version(int *, int *);
int PMPI_Errhandler_create(MPI_Handler_function *, MPI_Errhandler *);
int PMPI_Errhandler_set(MPI_Comm, MPI_Errhandler);
int PMPI_Errhandler_get(MPI_Comm, MPI_Errhandler *);
int PMPI_Errhandler_free(MPI_Errhandler *);
int PMPI_Error_string(int, char *, int *);
int PMPI_Error_class(int, int *);
int PMPI_Init(int *, char ***);
int PMPI_Finalize(void);
int PMPI_Initialized(int *);
int PMPI_Abort(MPI_Comm, int);
int PMPI_Pcontrol(const int, ...);
int PMPI_Close_port(char *);
int PMPI_Comm_accept(char *, MPI_Info, int, MPI_Comm, MPI_Comm *);
int PMPI_Comm_connect(char *, MPI_Info, int, MPI_Comm, MPI_Comm *);
int PMPI_Comm_disconnect(MPI_Comm *);
int PMPI_Comm_get_parent(MPI_Comm *);
int PMPI_Comm_join(int, MPI_Comm *);
int PMPI_Comm_spawn(char *, char *[], int, MPI_Info, int, MPI_Comm, MPI_Comm *,
int []);
int PMPI_Comm_spawn_multiple(int, char *[], char **[], int [], MPI_Info [], int,
MPI_Comm, MPI_Comm *, int []);
int PMPI_Lookup_name(char *, MPI_Info, char *);
int PMPI_Open_port(MPI_Info, char *);
int PMPI_Publish_name(char *, MPI_Info, char *);
int PMPI_Unpublish_name(char *, MPI_Info, char *);
int PMPI_Accumulate(void *, int, MPI_Datatype, int, MPI_Aint, int,
MPI_Datatype, MPI_Op, MPI_Win);
int PMPI_Get(void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype,
MPI_Win);
int PMPI_Put(void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype,
MPI_Win);
int PMPI_Win_complete(MPI_Win);
int PMPI_Win_create(void *, MPI_Aint, int, MPI_Info, MPI_Comm, MPI_Win *);
int PMPI_Win_fence(int, MPI_Win);
int PMPI_Win_free(MPI_Win *);
int PMPI_Win_get_group(MPI_Win, MPI_Group *);
int PMPI_Win_lock(int, int, int, MPI_Win);
int PMPI_Win_post(MPI_Group, int, MPI_Win);
int PMPI_Win_start(MPI_Group, int, MPI_Win);
int PMPI_Win_test(MPI_Win, int *);
int PMPI_Win_unlock(int, MPI_Win);
int PMPI_Win_wait(MPI_Win);
int PMPI_Alltoallw(void *, int [], int [], MPI_Datatype [], void *, int [],
int [], MPI_Datatype [], MPI_Comm);
int PMPI_Exscan(void *, void *, int, MPI_Datatype, MPI_Op, MPI_Comm) ;
int PMPI_Add_error_class(int *);
int PMPI_Add_error_code(int, int *);
int PMPI_Add_error_string(int, char *);
int PMPI_Comm_call_errhandler(MPI_Comm, int);
int PMPI_Comm_create_keyval(MPI_Comm_copy_attr_function *,
MPI_Comm_delete_attr_function *, int *, void *);
int PMPI_Comm_delete_attr(MPI_Comm, int);
int PMPI_Comm_free_keyval(int *);
int PMPI_Comm_get_attr(MPI_Comm, int, void *, int *);
int PMPI_Comm_get_name(MPI_Comm, char *, int *);
int PMPI_Comm_set_attr(MPI_Comm, int, void *);
int PMPI_Comm_set_name(MPI_Comm, char *);
int PMPI_File_call_errhandler(MPI_File, int);
int PMPI_Grequest_complete(MPI_Request);
int PMPI_Grequest_start(MPI_Grequest_query_function *,
MPI_Grequest_free_function *,
MPI_Grequest_cancel_function *, void *, MPI_Request *);
int PMPI_Init_thread(int *, char ***, int, int *);
int PMPI_Is_thread_main(int *);
int PMPI_Query_thread(int *);
int PMPI_Status_set_cancelled(MPI_Status *, int);
int PMPI_Status_set_elements(MPI_Status *, MPI_Datatype, int);
int PMPI_Type_create_keyval(MPI_Type_copy_attr_function *,
MPI_Type_delete_attr_function *, int *, void *);
int PMPI_Type_delete_attr(MPI_Datatype, int);
int PMPI_Type_dup(MPI_Datatype, MPI_Datatype *);
int PMPI_Type_free_keyval(int *);
int PMPI_Type_get_attr(MPI_Datatype, int, void *, int *);
int PMPI_Type_get_contents(MPI_Datatype, int, int, int, int [], MPI_Aint [],
MPI_Datatype []);
int PMPI_Type_get_envelope(MPI_Datatype, int *, int *, int *, int *);
int PMPI_Type_get_name(MPI_Datatype, char *, int *);
int PMPI_Type_set_attr(MPI_Datatype, int, void *);
int PMPI_Type_set_name(MPI_Datatype, char *);
int PMPI_Type_match_size( int, int, MPI_Datatype *);
int PMPI_Win_call_errhandler(MPI_Win, int);
int PMPI_Win_create_keyval(MPI_Win_copy_attr_function *,
MPI_Win_delete_attr_function *, int *, void *);
int PMPI_Win_delete_attr(MPI_Win, int);
int PMPI_Win_free_keyval(int *);
int PMPI_Win_get_attr(MPI_Win, int, void *, int *);
int PMPI_Win_get_name(MPI_Win, char *, int *);
int PMPI_Win_set_attr(MPI_Win, int, void *);
int PMPI_Win_set_name(MPI_Win, char *);
int PMPI_Type_create_f90_integer( int, MPI_Datatype * );
int PMPI_Type_create_f90_real( int, int, MPI_Datatype * );
int PMPI_Type_create_f90_complex( int, int, MPI_Datatype * );
int PMPI_Alloc_mem(MPI_Aint, MPI_Info info, void *baseptr);
int PMPI_Comm_create_errhandler(MPI_Comm_errhandler_function *, MPI_Errhandler *);
int PMPI_Comm_get_errhandler(MPI_Comm, MPI_Errhandler *);
int PMPI_Comm_set_errhandler(MPI_Comm, MPI_Errhandler);
int PMPI_File_create_errhandler(MPI_File_errhandler_function *, MPI_Errhandler *);
int PMPI_File_get_errhandler(MPI_File, MPI_Errhandler *);
int PMPI_File_set_errhandler(MPI_File, MPI_Errhandler);
int PMPI_Finalized(int *);
int PMPI_Free_mem(void *);
int PMPI_Get_address(void *, MPI_Aint *);
int PMPI_Info_create(MPI_Info *);
int PMPI_Info_delete(MPI_Info, char *);
int PMPI_Info_dup(MPI_Info, MPI_Info *);
int PMPI_Info_free(MPI_Info *info);
int PMPI_Info_get(MPI_Info, char *, int, char *, int *);
Found header files ['hdf5.h'] in ['/home/buildbot/install/pylith_linux_i686_binbot/include']
Popping language Cxx
Checking for function H5Pset_fapl_mpio in library ['/home/buildbot/install/pylith_linux_i686_binbot/lib/libhdf5_fortran.a', 'libhdf5.a', 'libz.a', 'libm.a'] []
Pushing language Cxx
sh: mpicxx -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.cc
Executing: mpicxx -c -o /tmp/petsc-5zlcDX/config.libraries/conftest.o -I/tmp/petsc-5zlcDX/config.functions -I/tmp/petsc-5zlcDX/config.setCompilers -I/tmp/petsc-5zlcDX/config.compilers -I/tmp/petsc-5zlcDX/config.types -I/tmp/petsc-5zlcDX/PETSc.utilities.missing -I/tmp/petsc-5zlcDX/config.libraries -DMPICH_IGNORE_CXX_SEEK -O -fPIC /tmp/petsc-5zlcDX/config.libraries/conftest.cc
sh:
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif
char H5Pset_fapl_mpio();
#ifdef __cplusplus
}
#endif
int main() {
H5Pset_fapl_mpio()
;
return 0;
}
Pushing language CXX
Popping language CXX
sh: mpicxx -o /tmp/petsc-5zlcDX/config.libraries/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -lhdf5_fortran -lhdf5 -lz -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
Executing: mpicxx -o /tmp/petsc-5zlcDX/config.libraries/conftest -DMPICH_IGNORE_CXX_SEEK -O /tmp/petsc-5zlcDX/config.libraries/conftest.o -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -lhdf5_fortran -lhdf5 -lz -lm -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -L/home/buildbot/install/pylith_linux_i686_binbot/lib/gcc/i686-pc-linux-gnu/4.5.2 -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -L/home/buildbot/install/pylith_linux_i686_binbot/lib -ldl -Wl,-rpath,/home/buildbot/install/pylith_linux_i686_binbot/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl
sh:
Defined "HAVE_LIBHDF5_FORTRAN" to "1"
Defined "HAVE_LIBHDF5" to "1"
Defined "HAVE_LIBZ" to "1"
Defined "HAVE_LIBM" to "1"
Popping language Cxx
Defined "HAVE_H5PSET_FAPL_MPIO" to "1"
================================================================================
TEST checkSharedLibrary from config.packages.hdf5(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/package.py:476)
TESTING: checkSharedLibrary from config.packages.hdf5(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/package.py:476)
By default we don't care about checking if the library is shared
Popping language Cxx
================================================================================
TEST alternateConfigureLibrary from config.packages.netcdf(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/package.py:480)
TESTING: alternateConfigureLibrary from config.packages.netcdf(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/package.py:480)
Called if --with-packagename=0; does nothing by default
================================================================================
TEST alternateConfigureLibrary from config.packages.MOAB(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/package.py:480)
TESTING: alternateConfigureLibrary from config.packages.MOAB(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/package.py:480)
Called if --with-packagename=0; does nothing by default
================================================================================
TEST alternateConfigureLibrary from config.packages.exodusii(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/package.py:480)
TESTING: alternateConfigureLibrary from config.packages.exodusii(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/package.py:480)
Called if --with-packagename=0; does nothing by default
Pushing language Cxx
================================================================================
TEST configureLibrary from config.packages.boost(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/package.py:426)
TESTING: configureLibrary from config.packages.boost(/home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/config/BuildSystem/config/package.py:426)
Find an installation and check if it can work with PETSc
==================================================================================
Checking for a functional boost
Looking for BOOST in directory starting with boost
Could not locate an existing copy of boost:
[]
Downloading boost
Downloading http://ftp.mcs.anl.gov/pub/petsc/externalpackages/boost_minimal_1_42_0.tar.gz to /home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/externalpackages/_d_boost_minimal_1_42_0.tar.gz
Extracting /home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/externalpackages/_d_boost_minimal_1_42_0.tar.gz
sh: cd /home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/externalpackages; chmod -R a+r boost_minimal_1_42_0;find boost_minimal_1_42_0 -type d -name "*" -exec chmod a+rx {} \;
Executing: cd /home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/externalpackages; chmod -R a+r boost_minimal_1_42_0;find boost_minimal_1_42_0 -type d -name "*" -exec chmod a+rx {} \;
sh:
Looking for BOOST in directory starting with boost
Found a copy of BOOST in boost_minimal_1_42_0
Looking for BOOST in directory starting with boost
Found a copy of BOOST in boost_minimal_1_42_0
boostDir = /home/buildbot/slave/build/pylith_linux_i686_binbot/PETSc/dev/binaries/externalp