[aspect-devel] ASPECT on Mac
sylvia.rockel at fu-berlin.de
Wed Oct 1 12:06:35 PDT 2014
thanks a lot for the hint.
> Do you have the rights to create files in the directory you are running
> programs at?
Perfect, deal.ii problem seems to be solved now. You were right, as I was
logged in as admin, I thought I've got all rights, but I was wrong.
permissions and now it's running smoothly.
But I still have this ASPECT problem while running mpi. In direct run,
everything works just fine. Could you please have a look on the file
> On Wed, Oct 1, 2014 at 7:57 AM, Sylvia Rockel
> <sylvia.rockel at fu-berlin.de> wrote:
>> Dear Timo,
>> I've re-installed my os x now and installed aspect again, but it's still
>> the same.
>> Concerning deal.ii step-32:
>> It still doesn't work with mpi. I also tested to run it directly, but
>> the same error, see attached file. I really have to set the graphical
>> output to false and then it works fine.
>> Concerning aspect:
>> I'm currently testing all cookbooks for whether they work with mpi or
>> As far as I've come right now, only stokes works with mpi. The others,
>> i. e.:
>> - composition-active,
>> - convection-box
>> - convection-box-3d
>> - free-surface
>> all get sooner or later the same exception, but I like to run them
>> directly later, to determine, whether this is also the case without mpi,
>> since it's something concerning the residual.
>> So, I'll give you an update as soon as I tested everything.
>>> Dear Timo,
>>> that's what I thought. You are perfectly right, if I run aspect
>>> everything works just fine. Honestly I haven't tried it with deal,
>>> run through if I canceled the graphical output. You may find the output
>>> "which mpirun" etc. attached. As you can see, it's the one from deal.
>>> is true for mpicc, mpic++, and mpif77/mpif90.
>>> The only additional mpiexe are in the petsc bin, but this is turned of
>>> aspect anyways. I'm slightly out of ideas right now.
>>> Thanks for your quick reply.
>>>> Dear Sylvia,
>>>> all these errors (and weird output) is related to your mpirun problem.
>>>> It looks like the mpirun isn't from the same MPI library that is used
>>>> to compile the code. I assume things work correctly if you run aspect
>>>> or step-32 directly (so "./aspect cookbooks/convection.box.prm")?
>>>> Can you check if there is an mpirun (or mpiexec) in one of the
>>>> directories installed by the deal.II bundle?
>>>> Can you please post the output of "which mpirun" and "ldd
>>>> libdeal_II.so" (the last one needs to be run in the lib/ directory of
>>>> the installation folder of deal.II)?
>>>> Timo Heister
>>>> Aspect-devel mailing list
>>>> Aspect-devel at geodynamics.org
>>> Aspect-devel mailing list
>>> Aspect-devel at geodynamics.org
>> Aspect-devel mailing list
>> Aspect-devel at geodynamics.org
> Timo Heister
> Aspect-devel mailing list
> Aspect-devel at geodynamics.org
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