[aspect-devel] compilation error
Lev Karatun
lev.karatun at gmail.com
Thu Nov 3 07:33:46 PDT 2016
Thank you Timo! That fixed it.
Best regards,
Lev Karatun.
2016-11-03 8:57 GMT-04:00 Timo Heister <heister at clemson.edu>:
> see https://urldefense.proofpoint.com/v2/url?u=https-3A__github.
> com_geodynamics_aspect_pull_1267&d=CwIFaQ&c=Ngd-
> ta5yRYsqeUsEDgxhcqsYYY1Xs5ogLxWPA_2Wlc4&r=c08Btfq4m9QEScXN3ZQwLZzzWQE7S8
> CYq1IYuzKV_Zk&m=5r5_DItWuONwoXvldIba3ADkcnN7FquA2JnGyXmTzmE&s=UhFn-
> WbTnWDY3DxqufF0zkfaJiOXBGD0q0C9F2WSpvU&e= for a proposed fix.
>
> On Thu, Nov 3, 2016 at 8:21 AM, Timo Heister <heister at clemson.edu> wrote:
> >> This may not help but as a last attempt, try building with CXX11
> support.
> >> The cmake flag is:
> >>
> >> -DDEAL_II_WITH_CXX11=ON
> >
> > This is on by default so I assume it got disabled automatically
> > because his compiler is too old to support it.
> >
> >
> > On Thu, Nov 3, 2016 at 8:19 AM, Timo Heister <heister at clemson.edu>
> wrote:
> >> Lev, John,
> >>
> >> this is a bug in ASPECT when compiling with an old compiler without
> >> c++11 support. We will get this fixed as soon as possible.
> >>
> >>
> >>
> >> On Thu, Nov 3, 2016 at 2:35 AM, John Naliboff <jbnaliboff at ucdavis.edu>
> wrote:
> >>> Hi Lev,
> >>>
> >>> Does dealii example-32 compile with your latest dealii update? That
> is a
> >>> good indicator to see if the problem lies directly with the dealii
> >>> installation, independent of ASPECT.
> >>>
> >>> Cheers,
> >>> John
> >>>
> >>> *************************************************
> >>> John Naliboff
> >>> Assistant Project Scientist, CIG
> >>> Earth & Planetary Sciences Dept., UC Davis
> >>>
> >>>
> >>>
> >>> On Nov 2, 2016, at 9:36 AM, Lev Karatun <lev.karatun at gmail.com> wrote:
> >>>
> >>> Hi John,
> >>>
> >>> I'm using the latest version of dealII (commit 0e395a1 - 16 hours ago),
> >>> updated it just before updating aspect. Trilinos version is 11.12.1. I
> >>> donwnloaded aspect into a separate empty directory, it doesn't compile
> from
> >>> there.
> >>>
> >>> Best regards,
> >>> Lev Karatun.
> >>>
> >>> 2016-11-02 12:00 GMT-04:00 John Naliboff <jbnaliboff at ucdavis.edu>:
> >>>>
> >>>> Hi Lev,
> >>>>
> >>>> What Trilinos and dealii version are you using? If you are using the
> >>>> development version of dealii, when was the last update? Also, did
> you do
> >>>> 'make distclean' before reconfiguring and compiling ASPECT? I'm not
> sure
> >>>> what the error below is related to, but the aforementioned
> information is
> >>>> always helpful when debugging an installation issue.
> >>>>
> >>>> Cheers,
> >>>> John
> >>>>
> >>>>
> >>>> *************************************************
> >>>> John Naliboff
> >>>> Assistant Project Scientist, CIG
> >>>> Earth & Planetary Sciences Dept., UC Davis
> >>>>
> >>>> On 11/02/2016 06:45 AM, Lev Karatun wrote:
> >>>>
> >>>> Hi,
> >>>>
> >>>> I was trying to update Aspect to the latest version and got the
> following
> >>>> error:
> >>>>
> >>>> [ 0%] Building CXX object
> >>>> CMakeFiles/aspect.dir/source/simulator/core.cc.o
> >>>> In file included from
> >>>> /home/lev/aspect/aspect_debug/include/aspect/simulator.h:30,
> >>>> from
> >>>> /home/lev/aspect/aspect_debug/source/simulator/core.cc:22:
> >>>> /home/lev/aspect/dealii_debug/include/deal.II/lac/trilinos_
> block_vector.h:
> >>>> In member function ‘void std::vector<_Tp, _Alloc>::resize(size_t,
> _Tp) [with
> >>>> _Tp = dealii::TrilinosWrappers::Vector, _Alloc =
> >>>> std::allocator<dealii::TrilinosWrappers::Vector>]’:
> >>>>
> >>>> /home/lev/aspect/dealii_debug/include/deal.II/lac/trilinos_
> block_vector.h:399:
> >>>> warning: ‘dealii::TrilinosWrappers::Vector::Vector()’ is deprecated
> >>>> (declared at
> >>>> /home/lev/aspect/dealii_debug/include/deal.II/lac/trilinos_
> vector.h:770)
> >>>> In file included from /home/lev/aspect/trilinos/include/Amesos.h:34,
> >>>> from
> >>>> /home/lev/aspect/dealii_debug/include/deal.II/lac/trilinos_
> solver.h:34,
> >>>> from
> >>>> /home/lev/aspect/dealii_debug/include/deal.II/lac/generic_
> linear_algebra.h:143,
> >>>> from
> >>>> /home/lev/aspect/aspect_debug/include/aspect/global.h:35,
> >>>> from
> >>>> /home/lev/aspect/aspect_debug/include/aspect/simulator.h:42,
> >>>> from
> >>>> /home/lev/aspect/aspect_debug/source/simulator/core.cc:22:
> >>>> /home/lev/aspect/trilinos/include/Amesos_BaseSolver.h: At global
> scope:
> >>>> /home/lev/aspect/trilinos/include/Amesos_BaseSolver.h:410: warning:
> unused
> >>>> parameter ‘paramList’
> >>>> /home/lev/aspect/trilinos/include/Amesos_BaseSolver.h:432: warning:
> unused
> >>>> parameter ‘TimingParameterList’
> >>>> In file included from
> >>>> /home/lev/aspect/dealii_debug/include/deal.II/base/
> parameter_handler.h:24,
> >>>> from
> >>>> /home/lev/aspect/aspect_debug/include/aspect/simulator.h:26,
> >>>> from
> >>>> /home/lev/aspect/aspect_debug/source/simulator/core.cc:22:
> >>>>
> >>>> /home/lev/aspect/dealii_debug/include/deal.II/bundled/boost/
> smart_ptr/scoped_ptr.hpp:
> >>>> In copy constructor ‘dealii::std_cxx11::unique_ptr<dealii::Mapping<2,
> 2>
> >>>> >::unique_ptr(const dealii::std_cxx11::unique_ptr<dealii::Mapping<2,
> 2>
> >>>> >&)’:
> >>>>
> >>>> /home/lev/aspect/dealii_debug/include/deal.II/base/std_
> cxx11/unique_ptr.h:60:
> >>>> instantiated from ‘aspect::Simulator<dim>::
> Simulator(ompi_communicator_t*,
> >>>> dealii::ParameterHandler&) [with int dim = 2]’
> >>>> /home/lev/aspect/aspect_debug/source/simulator/core.cc:2471:
> >>>> instantiated from here
> >>>>
> >>>> /home/lev/aspect/dealii_debug/include/deal.II/bundled/boost/
> smart_ptr/scoped_ptr.hpp:47:
> >>>> error: ‘boost::scoped_ptr<T>::scoped_ptr(const
> boost::scoped_ptr<T>&) [with
> >>>> T = dealii::Mapping<2, 2>]’ is private
> >>>>
> >>>> /home/lev/aspect/dealii_debug/include/deal.II/base/std_
> cxx11/unique_ptr.h:60:
> >>>> error: within this context
> >>>> /home/lev/aspect/aspect_debug/source/simulator/core.cc: In
> constructor
> >>>> ‘aspect::Simulator<dim>::Simulator(ompi_communicator_t*,
> >>>> dealii::ParameterHandler&) [with int dim = 2]’:
> >>>> /home/lev/aspect/aspect_debug/source/simulator/core.cc:2471:
> >>>> instantiated from here
> >>>> /home/lev/aspect/aspect_debug/source/simulator/core.cc:218: note:
> >>>> synthesized method ‘dealii::std_cxx11::unique_ptr<dealii::Mapping<2,
> 2>
> >>>> >::unique_ptr(const dealii::std_cxx11::unique_ptr<dealii::Mapping<2,
> 2> >&)’
> >>>> first required here
> >>>> In file included from
> >>>> /home/lev/aspect/dealii_debug/include/deal.II/base/
> parameter_handler.h:24,
> >>>> from
> >>>> /home/lev/aspect/aspect_debug/include/aspect/simulator.h:26,
> >>>> from
> >>>> /home/lev/aspect/aspect_debug/source/simulator/core.cc:22:
> >>>>
> >>>> /home/lev/aspect/dealii_debug/include/deal.II/bundled/boost/
> smart_ptr/scoped_ptr.hpp:
> >>>> In copy constructor ‘dealii::std_cxx11::unique_ptr<dealii::Mapping<3,
> 3>
> >>>> >::unique_ptr(const dealii::std_cxx11::unique_ptr<dealii::Mapping<3,
> 3>
> >>>> >&)’:
> >>>>
> >>>> /home/lev/aspect/dealii_debug/include/deal.II/base/std_
> cxx11/unique_ptr.h:60:
> >>>> instantiated from ‘aspect::Simulator<dim>::
> Simulator(ompi_communicator_t*,
> >>>> dealii::ParameterHandler&) [with int dim = 3]’
> >>>> /home/lev/aspect/aspect_debug/source/simulator/core.cc:2471:
> >>>> instantiated from here
> >>>>
> >>>> /home/lev/aspect/dealii_debug/include/deal.II/bundled/boost/
> smart_ptr/scoped_ptr.hpp:47:
> >>>> error: ‘boost::scoped_ptr<T>::scoped_ptr(const
> boost::scoped_ptr<T>&) [with
> >>>> T = dealii::Mapping<3, 3>]’ is private
> >>>>
> >>>> /home/lev/aspect/dealii_debug/include/deal.II/base/std_
> cxx11/unique_ptr.h:60:
> >>>> error: within this context
> >>>> /home/lev/aspect/aspect_debug/source/simulator/core.cc: In
> constructor
> >>>> ‘aspect::Simulator<dim>::Simulator(ompi_communicator_t*,
> >>>> dealii::ParameterHandler&) [with int dim = 3]’:
> >>>> /home/lev/aspect/aspect_debug/source/simulator/core.cc:2471:
> >>>> instantiated from here
> >>>> /home/lev/aspect/aspect_debug/source/simulator/core.cc:218: note:
> >>>> synthesized method ‘dealii::std_cxx11::unique_ptr<dealii::Mapping<3,
> 3>
> >>>> >::unique_ptr(const dealii::std_cxx11::unique_ptr<dealii::Mapping<3,
> 3> >&)’
> >>>> first required here
> >>>>
> >>>> /home/lev/aspect/dealii_debug/include/deal.II/bundled/boost/
> system/error_code.hpp:
> >>>> At global scope:
> >>>>
> >>>> /home/lev/aspect/dealii_debug/include/deal.II/bundled/boost/
> system/error_code.hpp:221:
> >>>> warning: ‘boost::system::posix_category’ defined but not used
> >>>>
> >>>> /home/lev/aspect/dealii_debug/include/deal.II/bundled/boost/
> system/error_code.hpp:222:
> >>>> warning: ‘boost::system::errno_ecat’ defined but not used
> >>>>
> >>>> /home/lev/aspect/dealii_debug/include/deal.II/bundled/boost/
> system/error_code.hpp:223:
> >>>> warning: ‘boost::system::native_ecat’ defined but not used
> >>>> make[2]: *** [CMakeFiles/aspect.dir/source/simulator/core.cc.o]
> Error 1
> >>>> make[1]: *** [CMakeFiles/aspect.dir/all] Error 2
> >>>> make: *** [all] Error 2
> >>>>
> >>>> Tips on how to solve it would be appreciated.
> >>>>
> >>>> Best regards,
> >>>> Lev Karatun.
> >>>>
> >>>>
> >>>> _______________________________________________
> >>>> Aspect-devel mailing list
> >>>> Aspect-devel at geodynamics.org
> >>>> https://urldefense.proofpoint.com/v2/url?u=http-3A__lists.
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> >>>>
> >>>>
> >>>>
> >>>> _______________________________________________
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> CYq1IYuzKV_Zk&m=5r5_DItWuONwoXvldIba3ADkcnN7FquA2JnGyXmTzmE&s=tHVqWLlk_
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> >>>
> >>>
> >>> _______________________________________________
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> >>>
> >>>
> >>>
> >>> _______________________________________________
> >>> Aspect-devel mailing list
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> >>> https://urldefense.proofpoint.com/v2/url?u=http-3A__lists.
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> >>
> >>
> >> --
> >> Timo Heister
> >> http://www.math.clemson.edu/~heister/
> >
> >
> >
> > --
> > Timo Heister
> > http://www.math.clemson.edu/~heister/
>
>
>
> --
> Timo Heister
> http://www.math.clemson.edu/~heister/
> _______________________________________________
> Aspect-devel mailing list
> Aspect-devel at geodynamics.org
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