[aspect-devel] Fwd: Aspect installation error on OS X El Capitan

Wolfgang Bangerth bangerth at colostate.edu
Mon Nov 6 18:15:26 PST 2017 

Hiro,
I don't know the answer (and I don't know whether there are enough people with 
Macs using ASPECT), so let me redirect you further to the deal.II mailing list 
(CC:ed).

If you're not subscribed to the deal.II mailing list, you should be able to 
find answers on the online google group for this mailing list.

Best
  W.


On 11/06/2017 03:14 PM, Hiroaki Matsui wrote:
> Hi, all,
> 
> I have sent this question to CIG-MC mailing list,
> but I found that here would be better place to discuss about it.
> 
> I found that MPI compiler and mpirun command in dealii-8.5.app does not run on 
> my macbook with El Capitan (OS X 10.11.6)
> with the illegal instruction. And, looking at information of gcc, this package 
> seems to be built for OS X 10.12.
> 
> I wonder if this package can work on El Capitan.
> If so, do we have to use an older version of deal ii for El Capitan?
> Or, do we need another deal.ii-8.5.app for the older OS X?
> 
> Hiro.
> 
> bash-3.2$ /Applications/deal.II-8.5-brew.app/Contents/Resources/brew/bin/mpicc
> Illegal instruction: 4
> bash-3.2$ /Applications/deal.II-8.5-brew.app/Contents/Resources/brew/bin/mpic++
> Illegal instruction: 4
> bash-3.2$ /Applications/deal.II-8.5-brew.app/Contents/Resources/brew/bin/mpirun
> Illegal instruction: 4
> bash-3.2$ /Applications/deal.II-8.5-brew.app/Contents/Resources/brew/bin/gcc-6 -v
> Using built-in specs.
> COLLECT_GCC=/Applications/deal.II-8.5-brew.app/Contents/Resources/brew/bin/gcc-6
> COLLECT_LTO_WRAPPER=/Applications/deal.II-8.5-brew.app/Contents/Resources/brew/Cellar/gcc/6.3.0_1/libexec/gcc/x86_64-apple-darwin16.4.0/6.3.0/lto-wrapper
> Target: x86_64-apple-darwin16.4.0
> Configured with: ../configure --build=x86_64-apple-darwin16.4.0 
> --prefix=/Applications/deal.II-8.5-brew.app/Contents/Resources/brew/Cellar/gcc/6.3.0_1 
> --libdir=/Applications/deal.II-8.5-brew.app/Contents/Resources/brew/Cellar/gcc/6.3.0_1/lib/gcc/6 
> --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-6 
> --with-gmp=/Applications/deal.II-8.5-brew.app/Contents/Resources/brew/opt/gmp 
> --with-mpfr=/Applications/deal.II-8.5-brew.app/Contents/Resources/brew/opt/mpfr --with-mpc=/Applications/deal.II-8.5-brew.app/Contents/Resources/brew/opt/libmpc 
> --with-isl=/Applications/deal.II-8.5-brew.app/Contents/Resources/brew/opt/isl 
> --with-system-zlib --enable-stage1-checking --enable-checking=release 
> --enable-lto --with-build-config=bootstrap-debug --disable-werror 
> --with-pkgversion='Homebrew GCC 6.3.0_1' 
> --with-bugurl=https://github.com/Homebrew/homebrew-core/issues 
> <https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_Homebrew_homebrew-2Dcore_issues&d=DwMFaQ&c=ODFT-G5SujMiGrKuoJJjVg&r=KkOrCga5IcWjxrpeTIn1nmQG6jJSnwzdZwfNniMeeCc&m=xvjM-3PalmzkfsiyCsZ2CxN1rxxuFjV4-dKbyhY5F7Y&s=U59tknJQoBoqy7sftIHrx-BJ2YS-BS7nL4I6yVInS-g&e=> 
> --disable-nls --enable-multilib --with-native-system-header-dir=/usr/include 
> --with-sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk
> Thread model: posix
> gcc version 6.3.0 (Homebrew GCC 6.3.0_1)
> 
> 
>> 転送されたメッセージ：
>>
>> *差出人: *Hiroaki Matsui <hrmatsui at ucdavis.edu <mailto:hrmatsui at ucdavis.edu>>
>> *件名: **Re: Aspect installation error*
>> *日付: *2017年11月3日 16:43:58 GMT-7
>> *宛先: *"Hammond, Noah" <noah_hammond at alumni.brown.edu 
>> <mailto:noah_hammond at alumni.brown.edu>>, cig-mc at geodynamics.org 
>> <mailto:cig-mc at geodynamics.org>
>>
>> Dear Hammond,
>>
>> Thank you for asking the installation problem.
>>
>> I made the instruction with Deal II v8.2.1 and I also meet the same problem 
>> by using deal II v8.5.
>> Then, this document becomes outdated instruction.
>>
>> I am solving this problem, and I also ask if anyone have already install the 
>> latest ASPECT with the latest deal ii. on the mailing list.
>>
>> Have a good weekend,
>> Hiro.
>>
>>> 2017/11/03 12:53、Hammond, Noah <noah_hammond at alumni.brown.edu 
>>> <mailto:noah_hammond at alumni.brown.edu>> のメール：
>>>
>>> Hello, I have been following your document 
>>> <https://urldefense.proofpoint.com/v2/url?u=https-3A__wiki.geodynamics.org_-5Fmedia_software-3Aaspect-3Aaspect-5Fyosemite-5F20150529.pdf&d=DwMFaQ&c=ODFT-G5SujMiGrKuoJJjVg&r=KkOrCga5IcWjxrpeTIn1nmQG6jJSnwzdZwfNniMeeCc&m=xvjM-3PalmzkfsiyCsZ2CxN1rxxuFjV4-dKbyhY5F7Y&s=SZJsJ1mxGfvdn5zKyoV0DWOYjr0dlhUsTBHQ5jb_moo&e=> 
>>> on how to install ASPECT on Mac OS X. I ran into an error with compiling 
>>> Aspect and I was wondering if you could help.
>>>
>>> I am using Mac OS X El Capitan, 10.11.6.
>>>
>>> After installing Cmake and Deal.II I ran into an error Configuring aspect. 
>>> It looks like there is a problem with the C compiler but I will include the 
>>> error message below. I am not very experienced with Cmake so any help would 
>>> be appreciated. Thanks in advance. Below is the error message:
>>>
>>> bash-3.2$ /Applications/CMake.app/Contents/bin/cmake \
>>> > -D DEAL_II_DIR=/Applications/deal.II.app/Contents/Resources \
>>> > -D CMAKE_C_COMPILER="mpicc" \
>>> > -D CMAKE_CXX_COMPILER="mpicxx" \
>>> > -D CMAKE_CXX_FLAGS="-g -O3 -std=c++11" \
>>> > -D CMAKE_C_FLAGS="-g -O3" \
>>> > ../
>>> -- ====================================================
>>> -- ============ Configuring ASPECT ====================
>>> -- ====================================================
>>> -- Found deal.II version 8.5.0 at 
>>> '/Applications/deal.II-8.5-brew.app/Contents/Resources/lib/cmake/deal.II'
>>> -- Using ASPECT_USE_PETSC = 'OFF'
>>> -- The C compiler identification is AppleClang 7.3.0.7030031
>>> -- The CXX compiler identification is AppleClang 7.3.0.7030031
>>> -- Check for working C compiler: 
>>> /Applications/deal.II.app/Contents/Resources/opt/openmpi-1.6.5/bin/mpicc
>>> -- Check for working C compiler: 
>>> /Applications/deal.II.app/Contents/Resources/opt/openmpi-1.6.5/bin/mpicc -- 
>>> works
>>> -- Detecting C compiler ABI info
>>> -- Detecting C compiler ABI info - done
>>> -- Detecting C compile features
>>> -- Detecting C compile features - done
>>> -- Check for working CXX compiler: 
>>> /Applications/deal.II.app/Contents/Resources/opt/openmpi-1.6.5/bin/mpicxx
>>> -- Check for working CXX compiler: 
>>> /Applications/deal.II.app/Contents/Resources/opt/openmpi-1.6.5/bin/mpicxx 
>>> -- works
>>> -- Detecting CXX compiler ABI info
>>> -- Detecting CXX compiler ABI info - done
>>> -- Detecting CXX compile features
>>> -- Detecting CXX compile features - done
>>> -- Setting up test project, see tests/setup_tests.log for details.
>>> CMake Error at 
>>> /Applications/CMake.app/Contents/share/cmake-3.10/Modules/CMakeTestCXXCompiler.cmake:45 
>>> (message):
>>>   The C++ compiler
>>>
>>>     "/Applications/deal.II-8.5-brew.app/Contents/Resources/brew/bin/mpicxx"
>>>
>>>   is not able to compile a simple test program.
>>>
>>>   It fails with the following output:
>>>
>>>     Change Dir: 
>>> /Users/noahhammond/src/aspect/build_deal.ii.app/tests/CMakeFiles/CMakeTmp
>>>
>>>     Run Build Command:"/usr/bin/make" "cmTC_65999/fast"
>>>     /Applications/Xcode.app/Contents/Developer/usr/bin/make -f 
>>> CMakeFiles/cmTC_65999.dir/build.make CMakeFiles/cmTC_65999.dir/build
>>>     Building CXX object CMakeFiles/cmTC_65999.dir/testCXXCompiler.cxx.o
>>>     
>>> /Applications/deal.II-8.5-brew.app/Contents/Resources/brew/bin/mpicxx     
>>> -o CMakeFiles/cmTC_65999.dir/testCXXCompiler.cxx.o -c 
>>> /Users/noahhammond/src/aspect/build_deal.ii.app/tests/CMakeFiles/CMakeTmp/testCXXCompiler.cxx
>>>     make[1]: *** [CMakeFiles/cmTC_65999.dir/testCXXCompiler.cxx.o] Illegal 
>>> instruction: 4
>>>     make: *** [cmTC_65999/fast] Error 2
>>>
>>>
>>>
>>>
>>>   CMake will not be able to correctly generate this project.
>>> Call Stack (most recent call first):
>>>   CMakeLists.txt:19 (PROJECT)
>>>
>>>
>>> CMake Error at CMakeLists.txt:178 (MESSAGE):
>>>   ERROR: Test project could not be configured.
>>>
>>>
>>> -- Configuring incomplete, errors occurred!
>>>
>>>
>>
> 
> 
> 
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> Aspect-devel at geodynamics.org
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> 


-- 
------------------------------------------------------------------------
Wolfgang Bangerth          email:                 bangerth at colostate.edu
                            www: http://www.math.colostate.edu/~bangerth/

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