[aspect-devel] Fwd: Installation on cluster CentOS

[Marine Lasbleis]

Hi,

I sent a message with the logs, but apparently the files were too big 
and the email is awaiting moderation.

In between, I looked at the errors, and it seems that the main problem 
are a couple of functions from LAPACK, used by trilinos, that are 
deprecated in the most up-to-date versions of LAPACK (if version >= 3.6) 
Internet says to add a flag to the installation of trilinos (to use 
deprecated functions).

Here, we decided to switch to an older version of LAPACK, so I am 
running the installation with LAPACK 3.5 (and still gcc8). So far, it's 
going better, and it is building right now. I'll let you know if I 
manage to install deal_ii!


Best,

Marine



On 2018年09月26日 20:27, Max Rudolph wrote:
> I have seen this error message when trying to use certain compiler and 
> mpi combinations on our cluster. I think that it is because the module 
> files for gcc 8 on our cluster were not set up properly, so I am stuck 
> using an older gcc with intel MPI.
>
> On Wed, Sep 26, 2018 at 11:18 AM Marine Lasbleis 
> <marine.lasbleis at elsi.jp <mailto:marine.lasbleis at elsi.jp>> wrote:
>
>     Hi John and Timo,
>
>     Thanks for the help. I'll try with doing a new install tomorrow (this
>     time lag is quite weird ;) ). So far I used only 1 core for the
>     installation, I'll try with a couple of them instead. Space should
>     definitely not be a problem... We looked at what should trigger the
>     error "cannot compile a test program with the final set of
>     compiler and
>     linker flags", but the answer was quite obscur for us.
>
>     And yes, I specified the path for the installation, so this also
>     should
>     not be a problem.
>
>     With a clean install, I'll tell you if I can get more infos.
>
>
>     Best,
>
>     Marine
>
>
>     On 2018年09月26日 20:09, Timo Heister wrote:
>     >> There is no file with this name. It really looks like it is not
>     even
>     >> trying to compile...
>     >>
>     >> I have the CMakeOutput.log (attached to the first email), but no
>     >> Error.log...
>     > That is weird. cmake should create a .log file for successful
>     and one
>     > for failing output. The precise error should be in that file.
>     Are you
>     > running out of disk space?
>     >
>     > Can you just run "./candi.sh -j 4 --packages="dealii"" and look
>     at the
>     > output (specify some path with "-p")?
>     >
>     >
>     >
>
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