[aspect-devel] Fwd: Installation on cluster CentOS
Marine Lasbleis
marine.lasbleis at elsi.jp
Thu Sep 27 01:24:06 PDT 2018
Hi all,
I have re-run a clean installation with candi, removing everything
except trilinos and p4est.
Error is same... But this time I got error log from Cmake!
So here are the error log (and the associated output.log). I can't
really understand what is happening... Any idea?
I'll try later to switch to an older compiler, if I can find associated
openmpi and lapack libraries. Also, at the end of the compilation, the
system tries to look at a serie of DEAL_II_WITH_*** (like
DEAL_II_WITH_SUNDIALS), but most of them except trilinos and p4est have
"unmet external dependencies." It's OK, right?
Best,
Marine
On 2018年09月26日 20:27, Max Rudolph wrote:
> I have seen this error message when trying to use certain compiler and
> mpi combinations on our cluster. I think that it is because the module
> files for gcc 8 on our cluster were not set up properly, so I am stuck
> using an older gcc with intel MPI.
>
> On Wed, Sep 26, 2018 at 11:18 AM Marine Lasbleis
> <marine.lasbleis at elsi.jp <mailto:marine.lasbleis at elsi.jp>> wrote:
>
> Hi John and Timo,
>
> Thanks for the help. I'll try with doing a new install tomorrow (this
> time lag is quite weird ;) ). So far I used only 1 core for the
> installation, I'll try with a couple of them instead. Space should
> definitely not be a problem... We looked at what should trigger the
> error "cannot compile a test program with the final set of
> compiler and
> linker flags", but the answer was quite obscur for us.
>
> And yes, I specified the path for the installation, so this also
> should
> not be a problem.
>
> With a clean install, I'll tell you if I can get more infos.
>
>
> Best,
>
> Marine
>
>
> On 2018年09月26日 20:09, Timo Heister wrote:
> >> There is no file with this name. It really looks like it is not
> even
> >> trying to compile...
> >>
> >> I have the CMakeOutput.log (attached to the first email), but no
> >> Error.log...
> > That is weird. cmake should create a .log file for successful
> and one
> > for failing output. The precise error should be in that file.
> Are you
> > running out of disk space?
> >
> > Can you just run "./candi.sh -j 4 --packages="dealii"" and look
> at the
> > output (specify some path with "-p")?
> >
> >
> >
>
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