[aspect-devel] Fwd: Installation on cluster CentOS

Marine Lasbleis marine.lasbleis at elsi.jp
Thu Sep 27 01:24:06 PDT 2018


Hi all,

I have re-run a clean installation with candi, removing everything 
except trilinos and p4est.

Error is same... But this time I got error log from Cmake!

So here are the error log (and the associated output.log). I can't 
really understand what is happening... Any idea?

I'll try later to switch to an older compiler, if I can find associated 
openmpi and lapack libraries. Also, at the end of the compilation, the 
system tries to look at a serie of DEAL_II_WITH_*** (like 
DEAL_II_WITH_SUNDIALS), but most of them except trilinos and p4est have 
"unmet external dependencies." It's OK, right?


Best,

Marine


On 2018年09月26日 20:27, Max Rudolph wrote:
> I have seen this error message when trying to use certain compiler and 
> mpi combinations on our cluster. I think that it is because the module 
> files for gcc 8 on our cluster were not set up properly, so I am stuck 
> using an older gcc with intel MPI.
>
> On Wed, Sep 26, 2018 at 11:18 AM Marine Lasbleis 
> <marine.lasbleis at elsi.jp <mailto:marine.lasbleis at elsi.jp>> wrote:
>
>     Hi John and Timo,
>
>     Thanks for the help. I'll try with doing a new install tomorrow (this
>     time lag is quite weird ;) ). So far I used only 1 core for the
>     installation, I'll try with a couple of them instead. Space should
>     definitely not be a problem... We looked at what should trigger the
>     error "cannot compile a test program with the final set of
>     compiler and
>     linker flags", but the answer was quite obscur for us.
>
>     And yes, I specified the path for the installation, so this also
>     should
>     not be a problem.
>
>     With a clean install, I'll tell you if I can get more infos.
>
>
>     Best,
>
>     Marine
>
>
>     On 2018年09月26日 20:09, Timo Heister wrote:
>     >> There is no file with this name. It really looks like it is not
>     even
>     >> trying to compile...
>     >>
>     >> I have the CMakeOutput.log (attached to the first email), but no
>     >> Error.log...
>     > That is weird. cmake should create a .log file for successful
>     and one
>     > for failing output. The precise error should be in that file.
>     Are you
>     > running out of disk space?
>     >
>     > Can you just run "./candi.sh -j 4 --packages="dealii"" and look
>     at the
>     > output (specify some path with "-p")?
>     >
>     >
>     >
>
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>
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