[cig-commits] r4441 - in
short/3D/PyLith/branches/pylith-0.8/doc/userguide: . install
intro tutorials tutorials/reversenog tutorials/splitcube
sue at geodynamics.org
sue at geodynamics.org
Mon Aug 28 13:18:46 PDT 2006
Author: sue
Date: 2006-08-28 13:18:45 -0700 (Mon, 28 Aug 2006)
New Revision: 4441
Modified:
short/3D/PyLith/branches/pylith-0.8/doc/userguide/install/install.lyx
short/3D/PyLith/branches/pylith-0.8/doc/userguide/intro/intro.lyx
short/3D/PyLith/branches/pylith-0.8/doc/userguide/preface.lyx
short/3D/PyLith/branches/pylith-0.8/doc/userguide/tutorials/reversenog/reversenog.lyx
short/3D/PyLith/branches/pylith-0.8/doc/userguide/tutorials/splitcube/splitcube.lyx
short/3D/PyLith/branches/pylith-0.8/doc/userguide/tutorials/tutorials.lyx
short/3D/PyLith/branches/pylith-0.8/doc/userguide/userguide.lyx
Log:
fixed URLs to enable hotlink, suppressed pg no on title page, changed url to pylith binaries from leif shipping per Walter, other small errors fixed
Modified: short/3D/PyLith/branches/pylith-0.8/doc/userguide/install/install.lyx
===================================================================
--- short/3D/PyLith/branches/pylith-0.8/doc/userguide/install/install.lyx 2006-08-28 16:15:10 UTC (rev 4440)
+++ short/3D/PyLith/branches/pylith-0.8/doc/userguide/install/install.lyx 2006-08-28 20:18:45 UTC (rev 4441)
@@ -76,7 +76,7 @@
is dedicated to CIG issues associated with short-term crustal dynamics,
including the use of PyLith.
You can subscribe to the mailing list and view messages at
-\begin_inset LatexCommand \htmlurl[CIG Mailing Lists]{<http://www.geodynamics.org/mail/lists/>}
+\begin_inset LatexCommand \htmlurl[CIG Mailing Lists]{http://www.geodynamics.org/cig/lists/}
\end_inset
@@ -94,7 +94,7 @@
\family default
for bug tracking.
If you find a bug in PyLith, please submit a bug report to the
-\begin_inset LatexCommand \htmlurl[CIG Roundup System]{<http://www.geodynamics.org/roundup/>}
+\begin_inset LatexCommand \htmlurl[CIG Roundup System]{http://www.geodynamics.org/roundup/}
\end_inset
@@ -140,7 +140,7 @@
\family typewriter
\size footnotesize
-\begin_inset LatexCommand \htmlurl[tarball]{<http://crust.geodynamics.org/~leif/shipping/>}
+\begin_inset LatexCommand \htmlurl[tarball]{http://www.geodynamics.org:8080/cig/software/packages/pylith/pylith-0.8-linux-x86.tar.gz}
\end_inset
@@ -263,7 +263,7 @@
\begin_layout Enumerate
Download the
-\begin_inset LatexCommand \htmlurl[disk image]{<http://crust.geodynamics.org/~leif/shipping/>}
+\begin_inset LatexCommand \htmlurl[disk image]{http://www.geodynamics.org:8080/cig/software/packages/pylith/PyLith-0.8p1.dmg}
\end_inset
@@ -314,7 +314,7 @@
\begin_layout Enumerate
Download the
-\begin_inset LatexCommand \htmlurl[installer]{<http://crust.geodynamics.org/~leif/shipping/>}
+\begin_inset LatexCommand \htmlurl[installer]{http://www.geodynamics.org:8080/cig/software/packages/pylith/setup.exe}
\end_inset
@@ -399,7 +399,7 @@
\newline
in the
-\begin_inset LatexCommand \htmlurl[Geodynamics Subversion Repository]{<http://www.geodynamics.org/cig/software/Repository/>}
+\begin_inset LatexCommand \htmlurl[Geodynamics Subversion Repository]{http://www.geodynamics.org/cig/software/Repository/}
\end_inset
@@ -480,7 +480,7 @@
\color red
Warning:
\series default
-\color default
+\color none
Building PyLith using the source repositories is recommended only for expert
users who are willing to work with a moving target and rebuild on a frequent
basis.
@@ -507,7 +507,7 @@
in
\family default
the
-\begin_inset LatexCommand \htmlurl[Geodynamics Subversion Repository]{<http://www.geodynamics.org/cig/software/Repository/>}
+\begin_inset LatexCommand \htmlurl[Geodynamics Subversion Repository]{http://www.geodynamics.org/cig/software/Repository/}
\end_inset
@@ -563,7 +563,7 @@
\begin_layout Enumerate
Build
-\begin_inset LatexCommand \htmlurl[PETSc (developers version)]{<http://www-unix.mcs.anl.gov/petsc/petsc-as/developers/>}
+\begin_inset LatexCommand \htmlurl[PETSc (developers version)]{http://www-unix.mcs.anl.gov/petsc/petsc-as/developers/}
\end_inset
Modified: short/3D/PyLith/branches/pylith-0.8/doc/userguide/intro/intro.lyx
===================================================================
--- short/3D/PyLith/branches/pylith-0.8/doc/userguide/intro/intro.lyx 2006-08-28 16:15:10 UTC (rev 4440)
+++ short/3D/PyLith/branches/pylith-0.8/doc/userguide/intro/intro.lyx 2006-08-28 20:18:45 UTC (rev 4441)
@@ -62,8 +62,12 @@
code for simulating static and quasi-static crustal deformation.
The major new features present in Lithomop included dynamic memory allocation
and the use of the Pyre simulation framework and PETSc solvers.
- </para> <para> PyLith is currently being rewritten from scratch to create
- a much more modular, powerful simulation package.
+
+\end_layout
+
+\begin_layout Standard
+PyLith is currently being rewritten from scratch to create a much more modular,
+ powerful simulation package.
This new code will include earthquake dynamics (both rupture propagation
and seismic wave propagation).
A beta release is expected in late 2006.
@@ -275,7 +279,7 @@
\end_layout
\begin_layout Standard
-\begin_inset LatexCommand \htmlurl[PETSc]{<http://www-unix.mcs.anl.gov/petsc/petsc-as/>}
+\begin_inset LatexCommand \htmlurl[PETSc]{http://www-unix.mcs.anl.gov/petsc/petsc-as/}
\end_inset
Modified: short/3D/PyLith/branches/pylith-0.8/doc/userguide/preface.lyx
===================================================================
--- short/3D/PyLith/branches/pylith-0.8/doc/userguide/preface.lyx 2006-08-28 16:15:10 UTC (rev 4440)
+++ short/3D/PyLith/branches/pylith-0.8/doc/userguide/preface.lyx 2006-08-28 20:18:45 UTC (rev 4441)
@@ -90,12 +90,12 @@
Center, the National Science Foundation, the CIG, and internal U.S.
Geological Survey funding.
Pyre development is funded by the
-\begin_inset LatexCommand \htmlurl[Department of Energy's]{<http://www.doe.gov/engine/content.do>}
+\begin_inset LatexCommand \htmlurl[Department of Energy's]{http://www.doe.gov/engine/content.do}
\end_inset
Advanced Simulation and Computing program and the
-\begin_inset LatexCommand \htmlurl[National Science Foundation's]{<http://www.nsf.gov>}
+\begin_inset LatexCommand \htmlurl[National Science Foundation's]{http://www.nsf.gov}
\end_inset
Modified: short/3D/PyLith/branches/pylith-0.8/doc/userguide/tutorials/reversenog/reversenog.lyx
===================================================================
--- short/3D/PyLith/branches/pylith-0.8/doc/userguide/tutorials/reversenog/reversenog.lyx 2006-08-28 16:15:10 UTC (rev 4440)
+++ short/3D/PyLith/branches/pylith-0.8/doc/userguide/tutorials/reversenog/reversenog.lyx 2006-08-28 20:18:45 UTC (rev 4441)
@@ -49,7 +49,7 @@
run, and view the results of a benchmark problem involving reverse slip
on a dipping fault.
This problem examines the viscoelastic (Maxwell) relaxation of stress from
- a single, finite, reverse-slip earthquake in 3-D without body forces.
+ a single, finite, reverse-slip earthquake in 3D without body forces.
\end_layout
\begin_layout Subsection
@@ -248,7 +248,7 @@
\begin_layout Enumerate
Download the
-\begin_inset LatexCommand \htmlurl[tutorial tarball]{<http://www.geodynamics.org:8080/cig/Members/willic3/pylithusers/pylith0.8/pylith-0.8_tutorials.tgz>}
+\begin_inset LatexCommand \htmlurl[tutorial tarball]{http://www.geodynamics.org/cig/Members/willic3/pylithusers/pylith0.8/pylith-0.8_tutorials.tgz}
\end_inset
@@ -641,7 +641,7 @@
\color red
Warning:
\series default
-\color default
+\color none
If you make any changes to
\family typewriter
bmrsnog.geo
@@ -763,7 +763,7 @@
\begin_layout Standard
Now it is time to visualize the results of the simulation.
By default, PyLith writes simulation output using
-\begin_inset LatexCommand \htmlurl[AVS UCD files]{<href{http://help.avs.com/Express/doc/help/reference/dvmac/UCD_Form.htm>}}
+\begin_inset LatexCommand \htmlurl[AVS UCD files]{http://help.avs.com/Express/doc/help/reference/dvmac/UCD_Form.htm}
\end_inset
@@ -882,11 +882,12 @@
You can use the mouse to rotate, translate, and zoom.
Your image should look similar to the one in figure\InsetSpace ~
-\begin_inset LatexCommand \ref{fig::bmrsnog:xdisp:t10}
+\begin_inset LatexCommand \ref{fig:ParaView-rendering-of}
\end_inset
.
+
\end_layout
\begin_deeper
@@ -912,16 +913,12 @@
\end_layout
\begin_layout Caption
-ParaView rendering of displacement in x-direction at time step 10 (10 yrs
- after imposed dislocation) for the reverse slip without gravity benchmark.
-\end_layout
+\begin_inset LatexCommand \label{fig:ParaView-rendering-of}
-\begin_layout Standard
-\begin_inset LatexCommand \label{fig:bmrsnog:xdisp:t10}
-
\end_inset
-
+ParaView rendering of displacement in x-direction at time step 10 (10 yrs
+ after imposed dislocation) for the reverse slip without gravity benchmark.
\end_layout
\end_inset
@@ -957,7 +954,7 @@
\family sans
scalars
\family default
- button and the
+ button, and the
\family sans
iHat
\family default
@@ -991,7 +988,7 @@
the displacement vectors visible (colored using property), you should see
an image similar to the one in figure\InsetSpace ~
-\begin_inset LatexCommand \ref{fig:bmrsnog:xdisp:vec:t10}
+\begin_inset LatexCommand \ref{fig:ParaView-rendering-of2}
\end_inset
@@ -1021,22 +1018,18 @@
\end_layout
\begin_layout Caption
+\begin_inset LatexCommand \label{fig:ParaView-rendering-of2}
+
+\end_inset
+
ParaView rendering of displacement in x-direction and displacement vectors
at time step 10 (10 yrs after imposed dislocation) for the reverse slip
without gravity benchmark.
\end_layout
-\begin_layout Standard
-\begin_inset LatexCommand \label{fig:bmrsnog:xdisp:vec:t10}
-
\end_inset
-
-\end_layout
-\end_inset
-
-
\end_layout
\end_deeper
Modified: short/3D/PyLith/branches/pylith-0.8/doc/userguide/tutorials/splitcube/splitcube.lyx
===================================================================
--- short/3D/PyLith/branches/pylith-0.8/doc/userguide/tutorials/splitcube/splitcube.lyx 2006-08-28 16:15:10 UTC (rev 4440)
+++ short/3D/PyLith/branches/pylith-0.8/doc/userguide/tutorials/splitcube/splitcube.lyx 2006-08-28 20:18:45 UTC (rev 4441)
@@ -201,7 +201,7 @@
\begin_layout Enumerate
Download the
-\begin_inset LatexCommand \htmlurl[tutorial tarball]{<http://www.geodynamics.org:8080/cig/Members/willic3/pylithusers/pylith0.8/pylith-0.8_tutorials.tgz>}
+\begin_inset LatexCommand \htmlurl[tutorial tarball]{http://www.geodynamics.org/cig/Members/willic3/pylithusers/pylith0.8/pylith-0.8_tutorials.tgz}
\end_inset
@@ -220,14 +220,14 @@
\color black
tutorials/splitcube
\family default
-\color default
+\color none
directory.
The
\family typewriter
\color black
archive
\family default
-\color default
+\color none
directory contains all of the input and output files associated with this
tutorial.
We will copy input files from this directory into the
@@ -235,7 +235,7 @@
\color black
workarea
\family default
-\color default
+\color none
directory.
At each step, you can check to make sure your input and output agree with
the files in the
@@ -243,7 +243,7 @@
\color black
archive
\family default
-\color default
+\color none
directory.
These files also allow you to start at an intermediate step as described
in the next section.
@@ -265,19 +265,19 @@
\color black
tutor.py
\family default
-\color default
+\color none
script from the
\family typewriter
\color black
archive
\family default
-\color default
+\color none
directory into the
\family typewriter
\color black
workarea
\family default
-\color default
+\color none
directory.
\end_layout
@@ -291,7 +291,7 @@
\color black
tutor.py
\family default
-\color default
+\color none
in mode "clean" with step "all" to clear out all old tutorial files.
\end_layout
@@ -319,7 +319,7 @@
\color black
NETGEN
\family default
-\color default
+\color none
.
\end_layout
@@ -329,26 +329,26 @@
\color black
splitcube/workarea
\family default
-\color default
+\color none
directory, run
\family typewriter
\color black
tutor.py
\family default
-\color default
+\color none
for step "mesh" with mode "retrieve" to fetch the geometry file for
\family typewriter
\color black
NETGEN
\family default
-\color default
+\color none
.
You may also want to run
\family typewriter
\color black
tutor.py
\family default
-\color default
+\color none
for this step with mode "clean" to clean out old files.
\end_layout
@@ -368,7 +368,7 @@
\color black
splitcube.geo
\family default
-\color default
+\color none
file to see how the geometry for the problem is defined.
Notice that the fault plane has been flagged with a boundary condition
code.
@@ -387,13 +387,13 @@
\color black
NETGEN
\family default
-\color default
+\color none
by running
\family typewriter
\color black
ng
\family default
-\color default
+\color none
.
\end_layout
@@ -413,13 +413,13 @@
Load Geometry
\family default
-\color default
+\color none
and select
\family typewriter
\color black
splitcube.geo
\family default
-\color default
+\color none
.
\end_layout
@@ -430,7 +430,7 @@
\color black
Generate Mesh
\family default
-\color default
+\color none
.
\end_layout
@@ -441,7 +441,7 @@
\color black
splitcube.netgen
\family default
-\color default
+\color none
, making sure the export filetype is "Neutral format".
\end_layout
@@ -578,7 +578,7 @@
\color red
Warning:
\series default
-\color default
+\color none
If you make any changes to
\family typewriter
splitcube.geo
@@ -629,7 +629,7 @@
\color red
Warning:
\series default
-\color default
+\color none
If you make any changes to
\family typewriter
splitcube.geo
@@ -752,7 +752,7 @@
\begin_layout Standard
Now it is time to visualize the results of the simulation.
By default, PyLith writes simulation output using
-\begin_inset LatexCommand \htmlurl[AVS UCD files]{<http://help.avs.com/Express/doc/help/reference/dvmac/UCD_Form.htm>}
+\begin_inset LatexCommand \htmlurl[AVS UCD files]{http://help.avs.com/Express/doc/help/reference/dvmac/UCD_Form.htm}
\end_inset
@@ -857,7 +857,7 @@
\end_inset
-\color default
+\color none
Open Data
\family default
.
@@ -889,7 +889,7 @@
You can use the mouse to rotate, translate, and zoom.
Your image should look similar to the one in figure\InsetSpace ~
-\begin_inset LatexCommand \ref{fig::splitcube:ydisp:t0}
+\begin_inset LatexCommand \ref{fig:splitcube:ydisp:t0}
\end_inset
@@ -1196,7 +1196,7 @@
\end_inset
-\color default
+\color none
Open Data.
\family default
@@ -1225,7 +1225,7 @@
\end_inset
-\color default
+\color none
Append
\family default
.
Modified: short/3D/PyLith/branches/pylith-0.8/doc/userguide/tutorials/tutorials.lyx
===================================================================
--- short/3D/PyLith/branches/pylith-0.8/doc/userguide/tutorials/tutorials.lyx 2006-08-28 16:15:10 UTC (rev 4440)
+++ short/3D/PyLith/branches/pylith-0.8/doc/userguide/tutorials/tutorials.lyx 2006-08-28 20:18:45 UTC (rev 4441)
@@ -67,14 +67,14 @@
\color black
PyLith
\family default
-\color default
+\color none
you will need
-\begin_inset LatexCommand \htmlurl[NETGEN]{<http://www.hpfem.jku.at/netgen/>}
+\begin_inset LatexCommand \htmlurl[NETGEN]{http://www.hpfem.jku.at/netgen/}
\end_inset
to generate the mesh and
-\begin_inset LatexCommand \htmlurl[ParaView]{<http://www.paraview.org>}
+\begin_inset LatexCommand \htmlurl[ParaView]{http://www.paraview.org}
\end_inset
@@ -103,7 +103,7 @@
\color black
tutor.py
\family default
-\color default
+\color none
, to help with miscellaneous tasks, such as copying provided files into
a working directory.
This script can (1) check to make sure the files necessary for a given
@@ -116,13 +116,13 @@
\color black
tutor.py
\family default
-\color default
+\color none
with the
\family typewriter
\color black
-h
\family default
-\color default
+\color none
option for more information.
We will use this script at the beginning of each step of the tutorials
to retrieve files as necessary from the tutorial archive directory.
@@ -138,7 +138,7 @@
\color black
tutor.py
\family default
-\color default
+\color none
will not overwrite files that already exist in the workarea directory.
This means that if you mangle files in the working area, you should remove
them and let the tutor retrieve clean copies.
Modified: short/3D/PyLith/branches/pylith-0.8/doc/userguide/userguide.lyx
===================================================================
--- short/3D/PyLith/branches/pylith-0.8/doc/userguide/userguide.lyx 2006-08-28 16:15:10 UTC (rev 4440)
+++ short/3D/PyLith/branches/pylith-0.8/doc/userguide/userguide.lyx 2006-08-28 20:18:45 UTC (rev 4441)
@@ -1,22 +1,10 @@
-#LyX 1.4.2 created this file. For more info see http://www.lyx.org/
+#LyX 1.4.1 created this file. For more info see http://www.lyx.org/
\lyxformat 245
\begin_document
\begin_header
\textclass book
\begin_preamble
-% -*- TeX -*-
-
-
-
-\usepackage{alltt}
-
-%\usepackage{url}
\usepackage{hyperref}
-
-\usepackage{moreverb}
-
-
-\input{docdefs.tex}
\end_preamble
\language english
\inputencoding latin1
@@ -30,10 +18,10 @@
\cite_engine basic
\use_bibtopic false
\paperorientation portrait
-\leftmargin 0.7in
-\topmargin 0.7in
-\rightmargin 0.7in
-\bottommargin 0.7in
+\leftmargin 1in
+\topmargin 1in
+\rightmargin 1in
+\bottommargin 1in
\secnumdepth 3
\tocdepth 3
\paragraph_separation indent
@@ -41,7 +29,7 @@
\quotes_language english
\papercolumns 1
\papersides 2
-\paperpagestyle default
+\paperpagestyle plain
\tracking_changes false
\output_changes false
\end_header
@@ -78,6 +66,26 @@
\backslash
+thispagestyle{empty}
+\end_layout
+
+\begin_layout Standard
+
+\end_layout
+
+\end_inset
+
+
+\end_layout
+
+\begin_layout Standard
+\begin_inset ERT
+status collapsed
+
+\begin_layout Standard
+
+
+\backslash
frontmatter
\end_layout
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