[cig-commits] r5435 - mc/3D/CitcomS/trunk/doc/manual
sue at geodynamics.org
sue at geodynamics.org
Mon Dec 4 12:33:21 PST 2006
Author: sue
Date: 2006-12-04 12:33:20 -0800 (Mon, 04 Dec 2006)
New Revision: 5435
Modified:
mc/3D/CitcomS/trunk/doc/manual/citcoms.lyx
Log:
fixed more quotes, fixed table breaks, lines in table missing, other minor format problems
Modified: mc/3D/CitcomS/trunk/doc/manual/citcoms.lyx
===================================================================
--- mc/3D/CitcomS/trunk/doc/manual/citcoms.lyx 2006-12-04 19:48:19 UTC (rev 5434)
+++ mc/3D/CitcomS/trunk/doc/manual/citcoms.lyx 2006-12-04 20:33:20 UTC (rev 5435)
@@ -1,4 +1,4 @@
-#LyX 1.4.1 created this file. For more info see http://www.lyx.org/
+#LyX 1.4.3 created this file. For more info see http://www.lyx.org/
\lyxformat 245
\begin_document
\begin_header
@@ -416,7 +416,7 @@
\series bold
M
\series default
-antle) was originally written in the early 1990's by Louis Moresi.
+antle) was originally written in the early 1990s by Louis Moresi.
Although the code for three-dimensional problems was incorporated from
its inception, early versions of the software only solved for time-dependent
convection problems within two-dimensional Cartesian domains.
@@ -2231,7 +2231,7 @@
\end_inset
</cell>
</row>
-<row topline="true">
+<row topline="true" bottomline="true">
<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
\begin_inset Text
@@ -3478,7 +3478,9 @@
\end_layout
\begin_layout Subsubsection
-Example: Uniprocessor, example0.cfg
+Example: Uniprocessor,
+\family typewriter
+example0.cfg
\end_layout
\begin_layout LyX-Code
@@ -6408,7 +6410,9 @@
\end_layout
\begin_layout Subsubsection
-Example: Global Model, cookbook1.cfg
+Example: Global Model,
+\family typewriter
+cookbook1.cfg
\end_layout
\begin_layout LyX-Code
@@ -6639,7 +6643,9 @@
\end_layout
\begin_layout Subsubsection
-Example: Velocity Boundary Conditions, cookbook2.cfg
+Example: Velocity Boundary Conditions,
+\family typewriter
+cookbook2.cfg
\end_layout
\begin_layout LyX-Code
@@ -6912,7 +6918,9 @@
\end_layout
\begin_layout Subsubsection
-Example: Temperature-Dependent Viscosity, cookbook3.cfg
+Example: Temperature-Dependent Viscosity,
+\family typewriter
+cookbook3.cfg
\end_layout
\begin_layout LyX-Code
@@ -7084,7 +7092,9 @@
\end_layout
\begin_layout Subsubsection
-Example: Regionally Refined Meshes, cookbook4.cfg
+Example: Regionally Refined Meshes,
+\family typewriter
+cookbook4.cfg
\end_layout
\begin_layout LyX-Code
@@ -7326,8 +7336,12 @@
Since the starting age is set to 55 Ma, there will be 57 velocity files,
one for each Ma (
\family typewriter
-vel.dat0, vel.dat1,...vel.dat55, vel.dat56
+vel.dat0, vel.dat1,
\family default
+
+\family typewriter
+...vel.dat55, vel.dat56
+\family default
).
The format of the velocity file is described in Appendix
\begin_inset LatexCommand \vref{sec:Velocity-boundary-condition}
@@ -7421,7 +7435,9 @@
\end_layout
\begin_layout Subsubsection
-Example: Subduction Models with Trench Rollback, cookbook5.cfg
+Example: Subduction Models with Trench Rollback,
+\family typewriter
+cookbook5.cfg
\end_layout
\begin_layout LyX-Code
@@ -7802,7 +7818,7 @@
\begin_layout Standard
\begin_inset Tabular
<lyxtabular version="3" rows="5" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true">
@@ -7998,7 +8014,7 @@
\noindent
\begin_inset Tabular
<lyxtabular version="3" rows="6" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true">
@@ -8243,7 +8259,7 @@
\noindent
\begin_inset Tabular
<lyxtabular version="3" rows="4" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true">
@@ -8412,7 +8428,7 @@
\noindent
\begin_inset Tabular
<lyxtabular version="3" rows="2" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true">
@@ -8512,7 +8528,7 @@
\noindent
\begin_inset Tabular
<lyxtabular version="3" rows="4" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true">
@@ -8571,11 +8587,11 @@
\begin_layout Standard
datadir_old=
-\begin_inset Quotes sld
+\begin_inset Quotes srd
\end_inset
.
-\begin_inset Quotes sld
+\begin_inset Quotes srd
\end_inset
@@ -8651,7 +8667,7 @@
\noindent
\begin_inset Tabular
<lyxtabular version="3" rows="2" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true">
@@ -8724,7 +8740,7 @@
\end_layout
\begin_layout Standard
-\align center
+\align left
\begin_inset Tabular
<lyxtabular version="3" rows="3" columns="2">
<features>
@@ -8893,7 +8909,7 @@
\begin_layout Standard
\begin_inset Tabular
<lyxtabular version="3" rows="7" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true">
@@ -9123,7 +9139,7 @@
\noindent
\begin_inset Tabular
<lyxtabular version="3" rows="2" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true">
@@ -9182,7 +9198,7 @@
\begin_layout Standard
\begin_inset Tabular
<lyxtabular version="3" rows="1" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true" bottomline="true">
@@ -9235,7 +9251,7 @@
\noindent
\begin_inset Tabular
<lyxtabular version="3" rows="12" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true">
@@ -9615,7 +9631,7 @@
\begin_layout Standard
\begin_inset Tabular
<lyxtabular version="3" rows="3" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true">
@@ -9726,7 +9742,7 @@
\begin_layout Standard
\begin_inset Tabular
<lyxtabular version="3" rows="8" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true">
@@ -9956,7 +9972,7 @@
\begin_layout Standard
\begin_inset Tabular
<lyxtabular version="3" rows="6" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true">
@@ -10098,7 +10114,7 @@
\begin_layout Standard
\begin_inset Tabular
<lyxtabular version="3" rows="2" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true">
@@ -10172,7 +10188,7 @@
\begin_layout Standard
\begin_inset Tabular
<lyxtabular version="3" rows="3" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true">
@@ -10257,7 +10273,7 @@
\begin_layout Standard
\begin_inset Tabular
<lyxtabular version="3" rows="4" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true">
@@ -10360,12 +10376,6 @@
\end_layout
-\begin_layout Standard
-
-\newpage
-
-\end_layout
-
\begin_layout Subsection
Dimensional Information
\end_layout
@@ -10373,7 +10383,7 @@
\begin_layout Standard
\begin_inset Tabular
<lyxtabular version="3" rows="1" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true" bottomline="true">
@@ -10429,7 +10439,7 @@
\begin_layout Standard
\begin_inset Tabular
<lyxtabular version="3" rows="1" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true" bottomline="true">
@@ -10487,7 +10497,7 @@
\noindent
\begin_inset Tabular
<lyxtabular version="3" rows="5" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true">
@@ -10676,7 +10686,7 @@
\noindent
\begin_inset Tabular
<lyxtabular version="3" rows="3" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true">
@@ -10778,7 +10788,7 @@
\noindent
\begin_inset Tabular
<lyxtabular version="3" rows="2" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true">
@@ -10840,7 +10850,7 @@
\noindent
\begin_inset Tabular
<lyxtabular version="3" rows="6" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true">
@@ -11001,7 +11011,7 @@
\begin_layout Standard
\begin_inset Tabular
<lyxtabular version="3" rows="1" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true" bottomline="true">
@@ -11043,7 +11053,7 @@
\begin_layout Standard
\begin_inset Tabular
<lyxtabular version="3" rows="19" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true">
@@ -11500,7 +11510,7 @@
\noindent
\begin_inset Tabular
<lyxtabular version="3" rows="16" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true">
@@ -11839,7 +11849,7 @@
\noindent
\begin_inset Tabular
<lyxtabular version="3" rows="6" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true">
@@ -11977,7 +11987,7 @@
\noindent
\begin_inset Tabular
<lyxtabular version="3" rows="13" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true">
@@ -12255,7 +12265,7 @@
\noindent
\begin_inset Tabular
<lyxtabular version="3" rows="15" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true">
@@ -12573,7 +12583,7 @@
\noindent
\begin_inset Tabular
<lyxtabular version="3" rows="14" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" rightline="true" width="1.75in">
<column alignment="left" valignment="top" rightline="true" width="3.5in">
<row topline="true">
@@ -12871,7 +12881,7 @@
\noindent
\begin_inset Tabular
<lyxtabular version="3" rows="9" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true">
@@ -13068,7 +13078,7 @@
\begin_layout Standard
\begin_inset Tabular
<lyxtabular version="3" rows="11" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true">
@@ -13327,7 +13337,7 @@
\noindent
\begin_inset Tabular
<lyxtabular version="3" rows="11" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true">
@@ -13589,7 +13599,7 @@
\noindent
\begin_inset Tabular
<lyxtabular version="3" rows="12" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true">
@@ -13847,7 +13857,7 @@
\noindent
\begin_inset Tabular
<lyxtabular version="3" rows="2" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" rightline="true" width="1.75in">
<column alignment="left" valignment="top" rightline="true" width="3.5in">
<row topline="true">
@@ -13913,7 +13923,7 @@
\noindent
\begin_inset Tabular
<lyxtabular version="3" rows="16" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" width="1.75in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="3.5in">
<row topline="true">
@@ -14267,12 +14277,13 @@
times, and each channel can be individually activated or deactivated, and
sent to different locations (the terminal, sockets, files, devices, etc.).
The streams and their default states of the journal streams are:
-\end_layout
+\newline
-\begin_layout Standard
+\newline
+
\begin_inset Tabular
<lyxtabular version="3" rows="5" columns="2">
-<features islongtable="true">
+<features>
<column alignment="left" valignment="top" leftline="true" rightline="true" width="1.75in">
<column alignment="left" valignment="top" rightline="true" width="3.5in">
<row topline="true">
@@ -14387,9 +14398,9 @@
\end_inset
-\end_layout
+\newline
-\begin_layout Standard
+\newline
The journal facility is not used in the uncoupled CitComS solver.
For coupled solvers, there is a large amount of debugging information that
outputs through the journal facility.
@@ -14400,7 +14411,9 @@
\family default
and
\family typewriter
-journal.debug.CitComSExchanger
+journal.debug.
+\newline
+CitComSExchanger
\family default
.
Try running the scripts with the following options:
@@ -15049,16 +15062,39 @@
\begin_layout Standard
The first line of the file is a header.
The rest of the file is column-based, where the meaning of each column
- is: (
-\series bold
-TODO
-\series default
-: fix the following line, as it cuts off when rendering to pdf)
-\end_layout
+ is:
+\size footnotesize
-\begin_layout LyX-Code
-degree order geoid_sin geoid_cos geoid_from_bncy_sin geoid_from_bncy_cos
- geoid_from_surf_topo_sin geoid_from_surf_topo_cos
+\newline
+
+\newline
+
+\family typewriter
+degree
+\family default
+
+\family typewriter
+order
+\family default
+
+\family typewriter
+geoid_sin
+\family default
+
+\family typewriter
+geoid_cos
+\family default
+
+\family typewriter
+geoid_from_bncy_sin
+\family default
+
+\family typewriter
+geoid_from_bncy_cos
+\family default
+
+\family typewriter
+geoid_from_surf_topo_sin geoid_from_surf_topo_cos
\end_layout
\begin_layout Section
@@ -15205,12 +15241,13 @@
This License applies to any program or other work which contains a notice
placed by the copyright holder saying it may be distributed under the terms
of this General Public License.
- The "Program" below refers to any such program or work, and a "work based
- on the Program" means either the Program or any derivative work under copyright
- law: that is to say, a work containing the Program or a portion of it,
- either verbatim or with modifications and/or translated into another language.
- (Hereinafter, translation is included without limitation in the term "modificat
-ion.") Each licensee is addressed as "you."
+ The ``Program'' below refers to any such program or work, and a ``work
+ based on the Program'' means either the Program or any derivative work
+ under copyright law: that is to say, a work containing the Program or a
+ portion of it, either verbatim or with modifications and/or translated
+ into another language.
+ (Hereinafter, translation is included without limitation in the term ``modifica
+tion.'') Each licensee is addressed as ``you.''
\newline
\newline
@@ -15475,7 +15512,7 @@
\begin_layout Standard
Each version is given a distinguishing version number.
If the Program specifies a version number of this License which applies
- to it and "any later version," you have the option of following the terms
+ to it and ``any later version,'' you have the option of following the terms
and conditions either of that version or of any later version published
by the Free Software Foundation.
If the Program does not specify a version number of this License, you may
@@ -15531,7 +15568,7 @@
BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY FOR
THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW.
EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER
- PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER
+ PARTIES PROVIDE THE PROGRAM ``AS IS'' WITHOUT WARRANTY OF ANY KIND, EITHER
EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.
THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH
@@ -15600,7 +15637,7 @@
To do so, attach the following notices to the program.
It is safest to attach them to the start of each source file to most effectivel
y convey the exclusion of warranty; and each file should have at least the
- "copyright" line and a pointer to where the full notice is found.
+ ``copyright'' line and a pointer to where the full notice is found.
For example:
\end_layout
@@ -15664,7 +15701,8 @@
\begin_layout Standard
You should also get your employer (if you work as a programmer) or your
- school, if any, to sign a "copyright disclaimer" for the program, if necessary.
+ school, if any, to sign a ``copyright disclaimer'' for the program, if
+ necessary.
Here is a sample; alter the names:
\end_layout
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