[cig-commits] r5489 - mc/3D/CitcomS/trunk/doc/manual

[sue at geodynamics.org]

Author: sue
Date: 2006-12-06 21:03:23 -0800 (Wed, 06 Dec 2006)
New Revision: 5489

Modified:
   mc/3D/CitcomS/trunk/doc/manual/citcoms.lyx
Log:
text edits to appendices and bib

Modified: mc/3D/CitcomS/trunk/doc/manual/citcoms.lyx
===================================================================
--- mc/3D/CitcomS/trunk/doc/manual/citcoms.lyx	2006-12-07 00:12:17 UTC (rev 5488)
+++ mc/3D/CitcomS/trunk/doc/manual/citcoms.lyx	2006-12-07 05:03:23 UTC (rev 5489)
@@ -4289,7 +4289,7 @@
 
 \color red
 Warning: 
-\color default
+\color none
 This assumes your machine list has enough nodes for the simulation in question.
 \end_layout
 
@@ -8384,7 +8384,7 @@
 \family default
 \size default
 .
- Then, the coordinate is reading from the file specified by 
+ Then the coordinate is reading from the file specified by 
 \family typewriter
 \size small
 coor_file
@@ -8581,7 +8581,7 @@
 
 \family typewriter
 \size small
-output_format="ascii"
+output_format=ascii
 \end_layout
 
 \end_inset
@@ -8889,7 +8889,7 @@
 \newline
 
 \newline
-For full spherical model, 
+For a full spherical model, 
 \family typewriter
 nprocx
 \family default
@@ -8926,7 +8926,7 @@
 \newline
 
 \newline
-For full spherical
+For a full spherical
  model, 
 \family typewriter
 nodex
@@ -8989,15 +8989,13 @@
 \newline
 
 \newline
-For full spherical model, 
+For a full spherical model, 
 \family typewriter
 mgunitx
 \family default
  must be equal to 
 \family typewriter
 mgunity
-\family default
-.
 \end_layout
 
 \end_inset
@@ -11008,20 +11006,38 @@
 \begin_inset Text
 
 \begin_layout Standard
-If on, the initial age is set to 
+If 
 \family typewriter
+\size small
+on
+\family default
+\size default
+, the initial age is set to 
+\family typewriter
 start_age
 \family default
 .
- If it is off and 
+ If it is 
 \family typewriter
+\size small
+off
+\family default
+\size default
+ and 
+\family typewriter
 restart
 \family default
  or 
 \family typewriter
 post_p
 \family default
- is on, the initial age is read in from previous output.
+ is 
+\family typewriter
+\size small
+on
+\family default
+\size default
+, the initial age is read in from previous output.
  
 \end_layout
 
@@ -11091,9 +11107,15 @@
 
 \begin_layout Standard
 This is used for debugging.
- If verbose is on, additional information is output to a .
+ If verbose is 
 \family typewriter
 \size small
+on
+\family default
+\size default
+, additional information is output to a .
+\family typewriter
+\size small
 info
 \family default
 \size default
@@ -11121,7 +11143,13 @@
 \begin_inset Text
 
 \begin_layout Standard
-If on, the velocity residual will be output on the screen for every iteration
+If 
+\family typewriter
+\size small
+on
+\family default
+\size default
+, the velocity residual will be output on the screen for every iteration
  of the momentum solver.
 \end_layout
 
@@ -15952,9 +15980,9 @@
 \series bold
 TIP:
 \series default
- Even though the model starts at 83 million years before present, by default
- it will attempt to read in both a file for 84 and a file for 83 million
- years ago.
+ Even though the model starts at 83 million years before the present, by
+ default it will attempt to read in both a file for 84 and a file for 83
+ million years ago.
  To deal with this, just create a duplicate copy of 
 \family typewriter
 bvel.dat83
@@ -16008,7 +16036,13 @@
 \family typewriter
 mat.dat
 \family default
-, then it is necessary to have one mat.dat file for each million-year interval.
+, then it is necessary to have one 
+\family typewriter
+\size small
+mat.dat
+\family default
+\size default
+ file for each million-year interval.
  For example, if 
 \family typewriter
 start_age=83
@@ -16103,7 +16137,7 @@
  The input age is in millions of years.
  For the global mesh, each of the 12 caps requires one file for each million-yea
 r interval.
- For example, these files are needed for and 82-million-year age:
+ For example, these files are needed for an 82-million-year age:
 \end_layout
 
 \begin_layout LyX-Code
@@ -16185,11 +16219,11 @@
 \end_layout
 
 \begin_layout Standard
-The commands 
+The command 
 \family typewriter
 autocombine.py
 \family default
- produce 1 cap file for regional CitComS.py and 12 cap files for full CitComS.py,
+ produces 1 cap file for regional CitComS.py and 12 cap files for full CitComS.py,
  e.g., 
 \family typewriter
 test-case.cap00.10
@@ -16332,7 +16366,7 @@
 In this version of CitComS.py, the implementation of material support is
  not working.
  The material output has been disabled and is documented here for completion.
- This file is only output at the 0th time step.
+ This file is only outputted at the 0th time step.
  There is no header.
  The meaning of each column is: 
 \end_layout
@@ -17299,9 +17333,7 @@
 \begin_layout Bibliography
 
 \bibitem [2]{Moresi/Solomatov Numerical}
-Moresi, L.
- N., and V.
- S.
+Moresi, L.N., and V.S.
  Solomatov (1995), Numerical investigation of 2D convection with extremely
  large viscosity variations, 
 \emph on
@@ -17318,8 +17350,7 @@
 \begin_layout Bibliography
 
 \bibitem [3]{Moresi/Gurnis Contraints}
-Moresi, L.
- N., and M.
+Moresi, L.N., and M.
  Gurnis (1996), Constraints on the lateral strength of slabs from three-dimensio
 nal dynamic flow models, 
 \emph on
@@ -17356,10 +17387,8 @@
 \begin_layout Bibliography
 
 \bibitem [5]{Zhong et al The role of temperature}
-Zhong, S., M.
- T.
- Zuber, L.
- N.
+Zhong, S., M.T.
+ Zuber, L.N.
  Moresi, and M.
  Gurnis (2000), The role of temperature-dependent viscosity and surface
  plates in spherical shell models of mantle convection, 
@@ -17393,8 +17422,7 @@
 \begin_layout Bibliography
 
 \bibitem [7]{Conrad/Gurnis Seismic tomography}
-Conrad, C.
- P., and M.
+Conrad, C.P., and M.
  Gurnis (2003), Seismic tomography, surface uplift, and the breakup of Gondwanal
 and: Integrating mantle convection backwards in time, 
 \emph on
@@ -17412,9 +17440,7 @@
 \begin_layout Bibliography
 
 \bibitem [8]{Hughes The Finite Element Method}
-Hughes, T.
- J.
- R.
+Hughes, T.J.R.
  
 \emph on
 The Finite Element Method: Linear Static and Dynamic Finite Element Analysis.
@@ -17427,8 +17453,7 @@
 \begin_layout Bibliography
 
 \bibitem [9]{Ramage/Wathen Iterative solution}
-Ramage, A., and A.
- J.
+Ramage, A., and A.J.
  Wathen (1994), Iterative solution techniques for the Stokes and Navier-Stokes
  equations, 
 \emph on
@@ -17448,8 +17473,7 @@
 \begin_layout Bibliography
 
 \bibitem [10]{Brooks A.N.}
-Brooks, A.
- N.
+Brooks, A.N.
 
 \emph on
  A Petrov-Galerkin Finite Element Formulation for Convecton Dominated Flows.
@@ -17502,9 +17526,7 @@
 \begin_layout Bibliography
 
 \bibitem [13]{Hager/OConnell A simple global}
-Hager, B.
- H., and R.
- J.
+Hager, B.H., and R.J.
  O'Connell (1981), A simple global model of plate dynamics and mantle convection
 , 
 \emph on