[Cig-commits] r3821 - in
short/3D/PyLith/branches/pylith-0.8/doc/userguide: .
fileformats intro materials runpylith tutorials
baagaard at geodynamics.org
baagaard at geodynamics.org
Mon Jun 19 17:07:17 PDT 2006
Author: baagaard
Date: 2006-06-19 17:07:17 -0700 (Mon, 19 Jun 2006)
New Revision: 3821
Added:
short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/fuldat.xml
short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/prop.xml
short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/skew.xml
short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/split.xml
short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/statevar.xml
short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/time.xml
Modified:
short/3D/PyLith/branches/pylith-0.8/doc/userguide/appendices.xml
short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/bc.xml
short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/connect.xml
short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/coord.xml
short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/fileformats.xml
short/3D/PyLith/branches/pylith-0.8/doc/userguide/intro/intro.xml
short/3D/PyLith/branches/pylith-0.8/doc/userguide/makefile
short/3D/PyLith/branches/pylith-0.8/doc/userguide/materials/materials.xml
short/3D/PyLith/branches/pylith-0.8/doc/userguide/materials/maxwell_linear.xml
short/3D/PyLith/branches/pylith-0.8/doc/userguide/preface.xml
short/3D/PyLith/branches/pylith-0.8/doc/userguide/pylith.xml
short/3D/PyLith/branches/pylith-0.8/doc/userguide/pylith_userguide.xml
short/3D/PyLith/branches/pylith-0.8/doc/userguide/runpylith/runpylith.xml
short/3D/PyLith/branches/pylith-0.8/doc/userguide/tutorials/tutorialbm5.xml
short/3D/PyLith/branches/pylith-0.8/doc/userguide/tutorials/tutorials.xml
Log:
Added documentation for more of the file formats. Cleaned up id tags in documentation.
Modified: short/3D/PyLith/branches/pylith-0.8/doc/userguide/appendices.xml
===================================================================
--- short/3D/PyLith/branches/pylith-0.8/doc/userguide/appendices.xml 2006-06-19 21:24:33 UTC (rev 3820)
+++ short/3D/PyLith/branches/pylith-0.8/doc/userguide/appendices.xml 2006-06-20 00:07:17 UTC (rev 3821)
@@ -1,7 +1,7 @@
<?xml version="1.0"?>
<!DOCTYPE part PUBLIC "-//OASIS//DTD DocBook XML V4.4//EN"
"http://www.oasis-open.org/docbook/xml/4.4/docbookx.dtd">
-<part id="appendices">
+<part id="part_appendices">
<title>Appendices</title>
<xi:include
Modified: short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/bc.xml
===================================================================
--- short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/bc.xml 2006-06-19 21:24:33 UTC (rev 3820)
+++ short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/bc.xml 2006-06-20 00:07:17 UTC (rev 3821)
@@ -16,15 +16,15 @@
#
# Comment lines begin with '#'
#
-# First, specify units of coordinates for each type of boundary conditon.
-# All three are required even if they are not all used.
+# First, specify units of coordinates for each type of boundary
+# conditon. All three are required even if they are not all used.
#
displacement_units = m
velocity_units = m/s
force_units = newton
#
#
-# Boundary conditions applied to vertices. You must specify a flag and
+# Boundary conditions applied to vertices. You must specify a flag and
# value for each degree of freedom, even if some are free.
#
# Columns:
@@ -39,8 +39,8 @@
# (5) Boundary condition value for x DOF
# (6) Boundary condition value for y DOF
# (7) Boundary condition value for z DOF
- 1 0 1 0 0.0000e+00 0.0000e+00 0.0000e+00
- 3 0 1 0 0.0000e+00 0.0000e+00 0.0000e+00
+1 0 1 0 0.0000e+00 0.0000e+00 0.0000e+00
+3 0 1 0 0.0000e+00 0.0000e+00 0.0000e+00
12 0 1 0 0.0000e+00 0.0000e+00 0.0000e+00
...
</screen>
Modified: short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/connect.xml
===================================================================
--- short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/connect.xml 2006-06-19 21:24:33 UTC (rev 3820)
+++ short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/connect.xml 2006-06-20 00:07:17 UTC (rev 3821)
@@ -14,7 +14,8 @@
<figure>
<title>Format of <filename>xx.connect</filename> files</title>
<screen>
-# File containing finite-element mesh topology and material type information.
+# File containing finite-element mesh topology and material type
+# information.
#
# Comment lines begin with '#'
#
@@ -22,20 +23,21 @@
# (1) Element number
# (2) Element type
# 1 = Linear hexahedron (8 vertices) [NOT IMPLEMENTED]
-# 2 = Linear hexahedron with 1 set of collapsed vertices (7 vertices)
+# 2 = Linear hexahedron with 1 set of collapsed vertices
+# (7 vertices)
# [NOT IMPLEMENTED]
-# 3 = Linear hexahedron with 2 sets of collapsed vertices (6 vertices)
-# [NOT IMPLEMENTED]
-# 4 = Linear hexahedron with 4 vertices collapsed to a point (5 vertices)
-# [NOT IMPLEMENTED]
+# 3 = Linear hexahedron with 2 sets of collapsed vertices
+# (6 vertices) [NOT IMPLEMENTED]
+# 4 = Linear hexahedron with 4 vertices collapsed to a point
+# (5 vertices) [NOT IMPLEMENTED]
# 5 = Linear tetrahedron (4 vertices)
# 6 = Quadratix hexahedron (20 vertices) [NOT IMPLEMENTED]
-# 7 = Quadratic hexahedron with 3 vertices along one edge collapsed to a
-# point (18 vertices) [NOT IMPLEMENTED]
-# 8 = Quadratic hexahedron with 3 sets of collapsed vertices (15 vertices)
-# [NOT IMPLEMENTED]
-# 9 = Quadratic hexahedron with 9 vertices collapsed to a point (13 vertices)
-# [NOT IMPLEMENTED]
+# 7 = Quadratic hexahedron with 3 vertices along one edge
+# collapsed to a point (18 vertices) [NOT IMPLEMENTED]
+# 8 = Quadratic hexahedron with 3 sets of collapsed vertices
+# (15 vertices) [NOT IMPLEMENTED]
+# 9 = Quadratic hexahedron with 9 vertices collapsed to a point
+# (13 vertices) [NOT IMPLEMENTED]
# 10 = Quadratic tetrahedron (10 vertices) [NOT IMPLEMENTED]
# (3) Material type, numbered consecutively beginning with '1'
# (4) Infinite element flag, required but not currently implemented
@@ -44,9 +46,9 @@
#
# Note: No comments are allowed within the mesh information.
#
- 1 5 1 0 2911 2865 2886 2864
- 2 5 2 0 843 3999 4029 3926
- 3 5 1 0 684 8975 2346 6219
+1 5 1 0 2911 2865 2886 2864
+2 5 2 0 843 3999 4029 3926
+3 5 1 0 684 8975 2346 6219
...
</screen>
</figure>
Modified: short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/coord.xml
===================================================================
--- short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/coord.xml 2006-06-19 21:24:33 UTC (rev 3820)
+++ short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/coord.xml 2006-06-20 00:07:17 UTC (rev 3821)
@@ -31,10 +31,10 @@
#
# Note: No comments are allowed within the list of vertex coordinates
#
- 1 0.000000e+00 0.000000e+00 0.000000e+00
- 2 1.000000e+00 0.000000e+00 0.000000e+00
- 3 0.000000e+00 2.000000e+00 0.000000e+00
- 4 1.000000e+00 2.000000e+00 3.000000e+00
+1 0.000000e+00 0.000000e+00 0.000000e+00
+2 1.000000e+00 0.000000e+00 0.000000e+00
+3 0.000000e+00 2.000000e+00 0.000000e+00
+4 1.000000e+00 2.000000e+00 3.000000e+00
...
</screen>
</figure>
Modified: short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/fileformats.xml
===================================================================
--- short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/fileformats.xml 2006-06-19 21:24:33 UTC (rev 3820)
+++ short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/fileformats.xml 2006-06-20 00:07:17 UTC (rev 3821)
@@ -1,17 +1,32 @@
<?xml version="1.0"?>
<!DOCTYPE chapter PUBLIC "-//OASIS//DTD DocBook XML V4.4//EN"
"http://www.oasis-open.org/docbook/xml/4.4/docbookx.dtd">
-<chapter id="fileformats">
+<chapter id="chapter_fileformats">
<title>File Formats</title>
<para>
CHARLES- DO ALL FILES PERMIT COMMENT LINES?
</para>
+ <!-- REQUIRED INPUT FILES -->
<xi:include
xmlns:xi="http://www.w3.org/2001/XInclude" href="coord.xml" />
<xi:include
xmlns:xi="http://www.w3.org/2001/XInclude" href="connect.xml" />
<xi:include
xmlns:xi="http://www.w3.org/2001/XInclude" href="bc.xml" />
+ <xi:include
+ xmlns:xi="http://www.w3.org/2001/XInclude" href="time.xml" />
+ <xi:include
+ xmlns:xi="http://www.w3.org/2001/XInclude" href="statevar.xml" />
+ <xi:include
+ xmlns:xi="http://www.w3.org/2001/XInclude" href="prop.xml" />
+
+ <!-- OPTIONAL INPUT FILES -->
+ <xi:include
+ xmlns:xi="http://www.w3.org/2001/XInclude" href="split.xml" />
+ <xi:include
+ xmlns:xi="http://www.w3.org/2001/XInclude" href="fuldat.xml" />
+ <xi:include
+ xmlns:xi="http://www.w3.org/2001/XInclude" href="skew.xml" />
</chapter>
Added: short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/fuldat.xml
===================================================================
--- short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/fuldat.xml 2006-06-19 21:24:33 UTC (rev 3820)
+++ short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/fuldat.xml 2006-06-20 00:07:17 UTC (rev 3821)
@@ -0,0 +1,32 @@
+<?xml version="1.0"?>
+<!DOCTYPE section PUBLIC "-//OASIS//DTD DocBook XML V4.4//EN"
+ "http://www.oasis-open.org/docbook/xml/4.4/docbookx.dtd">
+<section id="section_fuldat">
+ <title>xx.fuldat</title>
+
+ <para>
+ The <filename>xx.fuldat</filename> file lists the time step
+ numbers at which full output is desired. The elastic solution
+ (time step 0) is always included in the output.
+ </para>
+
+ <figure>
+ <title>Format of <filename>xx.time</filename> files</title>
+ <screen>
+# File containing time steps at which full output is desired.
+#
+# Comment lines begin with '#'
+#
+# Note: Time step 0 (elastic solution) is always included in the
+# output.
+#
+# List the time steps, one per line.
+#
+ 10
+ 50
+ 100
+...
+ </screen>
+ </figure>
+
+</section>
Added: short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/prop.xml
===================================================================
--- short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/prop.xml 2006-06-19 21:24:33 UTC (rev 3820)
+++ short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/prop.xml 2006-06-20 00:07:17 UTC (rev 3821)
@@ -0,0 +1,71 @@
+<?xml version="1.0"?>
+<!DOCTYPE section PUBLIC "-//OASIS//DTD DocBook XML V4.4//EN"
+ "http://www.oasis-open.org/docbook/xml/4.4/docbookx.dtd">
+<section id="section_prop">
+ <title>xx.prop</title>
+
+ <para>
+ The <filename>xx.prop</filename> file specifies the properties for
+ each material model in the problem.
+ </para>
+
+ <warning>
+ <para>
+ The materials must be listed in order according to the material
+ number assigned to the elements in
+ <filename>xx.connect</filename>.
+ </para>
+ </warning>
+
+ <figure>
+ <title>Format of <filename>xx.prop</filename> files</title>
+ <screen>
+# File containing material properties.
+#
+# Comment lines begin with '#'
+#
+# The material type and material property values are specified using a
+# "keyword = value" syntax. The keywords for the different material
+# types are given below. The units for values with dimensions should
+# follow the value as shown in the examples below.
+#
+# Materials and keywords:
+# Isotropic linear elastic
+# materialType ='IsotropicLinearElastic'
+# density
+# youngsModulus
+# poissonsRatio
+# endMaterial ='True' (flag indicating end of material)
+# Isotropic linear maxwell viscoelastic
+# materialType ='IsotropicLinearMaxwellViscoelastic'
+# density
+# youngsModulus
+# poissonsRatio
+# viscosity
+# endMaterial ='True' (flag indicating end of material)
+#
+# Material number 1
+materialType = 'IsotropicLinearMaxwellViscoelastic'
+density = 3000.0*kg/m**3
+youngsModulus = 7.5e10*Pa
+poissonsRatio = 0.25
+viscosity = 1.0e+18*Pa*s
+endMaterial = True
+# Material number 2
+materialType = 'IsotropicLinearElastic'
+density = 3000.0*kg/m**3
+youngsModulus = 7.5e10*Pa
+poissonsRatio = 0.25
+endMaterial = True
+# Material number 3
+materialType = 'IsotropicLinearMaxwellViscoelastic'
+density = 3000.0*kg/m**3
+youngsModulus = 7.5e10*Pa
+poissonsRatio = 0.25
+viscosity = 1.0e+18*Pa*s
+endMaterial = True
+...
+ </screen>
+ </figure>
+
+</section>
Added: short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/skew.xml
===================================================================
--- short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/skew.xml 2006-06-19 21:24:33 UTC (rev 3820)
+++ short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/skew.xml 2006-06-20 00:07:17 UTC (rev 3821)
@@ -0,0 +1,42 @@
+<?xml version="1.0"?>
+<!DOCTYPE section PUBLIC "-//OASIS//DTD DocBook XML V4.4//EN"
+ "http://www.oasis-open.org/docbook/xml/4.4/docbookx.dtd">
+<section id="section_skew">
+ <title>xx.skew</title>
+
+ <para>
+ The <filename>xx.skew</filename> file specifies local coordinate
+ systems for nodes. The local coordinate system is specified using
+ two Euler angles that rotate the local coordinate system to the
+ global coordinate system.
+ </para>
+
+ <para>
+ CHARLES- WHEN ARE THESE USED? DO THEY APPLY TO ALL BC ASSOCIATED
+ WITH ALL OF THE NODES LISTED??
+ </para>
+
+ <figure>
+ <title>Format of <filename>xx.time</filename> files</title>
+ <screen>
+# File containing local nodal coordinates.
+#
+# Comment lines begin with '#'
+#
+# First, specify units for rotations.
+#
+rotation_units = degree
+#
+#
+# Columns:
+# (1) Node number
+# (2) Euler angle for rotation in the x-y plane
+# (3) Euler angle for rotation in the x-z plane
+#
+68 12.3 4.2
+132 -12.3 -4.2
+...
+ </screen>
+ </figure>
+
+</section>
Added: short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/split.xml
===================================================================
--- short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/split.xml 2006-06-19 21:24:33 UTC (rev 3820)
+++ short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/split.xml 2006-06-20 00:07:17 UTC (rev 3821)
@@ -0,0 +1,46 @@
+<?xml version="1.0"?>
+<!DOCTYPE section PUBLIC "-//OASIS//DTD DocBook XML V4.4//EN"
+ "http://www.oasis-open.org/docbook/xml/4.4/docbookx.dtd">
+<section id="section_split">
+ <title>xx.split</title>
+
+ <para>
+ The <filename>xx.split</filename> file specifies the split node
+ information for modeling dislocations. Dislocations may be used in
+ simulating slip on faults as well as dike intrusions.
+ </para>
+
+ <figure>
+ <title>Format of <filename>xx.split</filename> files</title>
+ <screen>
+# File containing time stepping parameters.
+#
+# Comment lines begin with '#'
+#
+
+# Displacements are specified for each vertex on the fault for each
+# element containing the vertex. The displacements on each side of the
+# fault or dike should have opposite signs. The displacements
+# associated with a single side of the fault for each vertex should be
+# the same.
+#
+# Columns:
+# (1) Element number
+# (2) Vertex number
+# (3) Time history flag
+# 0 = Slip only in elastic solution
+# -1 = Slip at constant velocity
+# n = Slip according to load history n (requires xx.hist file)
+# (4) Displacement in x direction
+# (5) Displacement in y direction
+# (6) Displacement in z direction
+#
+ 14886 36 0 0.353500000 0.00000000 -0.353500000
+ 14887 36 0 0.353500000 0.00000000 -0.353500000
+ 14896 36 0 -0.353500000 0.00000000 0.353500000
+ 14981 36 0 -0.353500000 0.00000000 0.353500000
+...
+ </screen>
+ </figure>
+
+</section>
Added: short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/statevar.xml
===================================================================
--- short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/statevar.xml 2006-06-19 21:24:33 UTC (rev 3820)
+++ short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/statevar.xml 2006-06-20 00:07:17 UTC (rev 3821)
@@ -0,0 +1,42 @@
+<?xml version="1.0"?>
+<!DOCTYPE section PUBLIC "-//OASIS//DTD DocBook XML V4.4//EN"
+ "http://www.oasis-open.org/docbook/xml/4.4/docbookx.dtd">
+<section id="section_statevar">
+ <title>xx.statevar</title>
+
+ <para>
+ The <filename>xx.statevar</filename> file specifies which state
+ variables are to be included in the output of the elastic and time
+ dependent solutions.
+ </para>
+
+ <figure>
+ <title>Format of <filename>xx.statevar</filename> files</title>
+ <screen>
+# File specifying which state variables to output.
+#
+# Comment lines begin with '#'
+#
+# State variables occur in groups of 6, corresponding to the number of
+# stress/strain components. The present groups are:
+# 1-6: Cauchy stress
+# 7-12: Total strain
+# 13-18: Viscous strain
+# 18-24: Plastic strain
+#
+# Lines:
+# (1) Total accumulated values for the current time step
+# (2) Incremental values (previous to current)
+# (3) Rate values (previous to current)
+#
+# Columns (per line):
+# (1) Number of state variables to output (0 ≤ value ≤ 24)
+# (2)+ State variable number to output (1 ≤ value ≤ 24)
+#
+ 12 1 2 3 4 5 6 7 8 9 10 11 12
+ 12 1 2 3 4 5 6 7 8 9 10 11 12
+ 0
+ </screen>
+ </figure>
+
+</section>
Added: short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/time.xml
===================================================================
--- short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/time.xml 2006-06-19 21:24:33 UTC (rev 3820)
+++ short/3D/PyLith/branches/pylith-0.8/doc/userguide/fileformats/time.xml 2006-06-20 00:07:17 UTC (rev 3821)
@@ -0,0 +1,69 @@
+<?xml version="1.0"?>
+<!DOCTYPE section PUBLIC "-//OASIS//DTD DocBook XML V4.4//EN"
+ "http://www.oasis-open.org/docbook/xml/4.4/docbookx.dtd">
+<section id="section_time">
+ <title>xx.time</title>
+
+ <para>
+ The <filename>xx.time</filename> file specifies the time stepping
+ parameters for the simulation.
+ </para>
+
+ <warning>
+ <para>
+ The convergence criteria depend on the type of solution and
+ material models. The time step for a linear elastic problem is
+ much different than that for a nonlinear or time-dependent
+ problem.
+ </para>
+ </warning>
+
+ <figure>
+ <title>Format of <filename>xx.time</filename> files</title>
+ <screen>
+# File containing time stepping parameters.
+#
+# Comment lines begin with '#'
+#
+# First, specify units used in values with dimensions of time.
+#
+time_units = year
+#
+#
+# Time stepping parameters are given in groups. The elastic solution
+# corresponds to group 0 and must always be defined. Although some of
+# the parameters do not have any meaning for the elastic solution,
+# they must be present anyway.
+#
+# Columns:
+# (1) Time step group number (=0 for elastic solution).
+# (2) The number of time steps in the group (=1 for elastic solution).
+# (3) Time step size (given in units of time_units).
+# (4) Amount of implicitness. Real dimensionless parameter that
+# ranges from 0.0 (fully explicit) to 1.0 (fully implicit). The
+# value is generally set to 0.5.
+# (5) Maximum number of equilibrium iterations before stiffness
+# matrix is reformed.
+# (6) Number of time steps between initial reformation of stiffness
+# matrix.
+# <0 Indicates that reformation should occur only for the first
+# step in each time step group.
+# =0 Indicates that reformation should never occur.
+# (7) Large deformation solution flag
+# =0 Linear strain
+# =1 Large strain but use only linear contribution to the
+# stiffness matrix (sometimes results in better convergence)
+# =2 Large strain and use nonlinear contribution to the
+# stiffness matrix
+# (8) Convergece tolerance for displacements (dimensionless value)
+# (9) Convergece tolerance for forces (dimensionless value)
+# (10) Convergece tolerance for energy (dimensionless value)
+# (11) Maximum number of equilibrium iterations
+#
+ 0 1 0.0 5.0e-01 1001 4 0 1.0e+00 1.0e+0 1.0e+00 1
+ 1 100 0.1 5.0e-01 1001 -1 0 1.0e+00 1.0e+0 1.0e+00 1
+...
+ </screen>
+ </figure>
+
+</section>
Modified: short/3D/PyLith/branches/pylith-0.8/doc/userguide/intro/intro.xml
===================================================================
--- short/3D/PyLith/branches/pylith-0.8/doc/userguide/intro/intro.xml 2006-06-19 21:24:33 UTC (rev 3820)
+++ short/3D/PyLith/branches/pylith-0.8/doc/userguide/intro/intro.xml 2006-06-20 00:07:17 UTC (rev 3821)
@@ -1,7 +1,7 @@
<?xml version="1.0"?>
<!DOCTYPE chapter PUBLIC "-//OASIS//DTD DocBook XML V4.4//EN"
"http://www.oasis-open.org/docbook/xml/4.4/docbookx.dtd">
-<chapter id="introduction">
+<chapter id="chapter_introduction">
<title>Introduction</title>
<!-- SECTION +++++++++++++++++++++++++++++++++++++++++++++++++++ -->
@@ -148,7 +148,7 @@
Pyre Architecture. The integration framework is a set of
cooperating abstract services.
</title>
- <mediaobject id="pyre_overview">
+ <mediaobject id="figure_pyre_overview">
<imageobject role="fo">
<imagedata fileref="figs/pyre_overview.eps" format="EPS"/>
</imageobject>
Modified: short/3D/PyLith/branches/pylith-0.8/doc/userguide/makefile
===================================================================
--- short/3D/PyLith/branches/pylith-0.8/doc/userguide/makefile 2006-06-19 21:24:33 UTC (rev 3820)
+++ short/3D/PyLith/branches/pylith-0.8/doc/userguide/makefile 2006-06-20 00:07:17 UTC (rev 3821)
@@ -1,5 +1,5 @@
-#XSLSTYLESHEET_DIR=/usr/share/sgml/docbook/xsl-stylesheets
-XSLSTYLESHEET_DIR=/sw/share/xml/xsl/docbook-xsl
+XSLSTYLESHEET_DIR=/usr/share/sgml/docbook/xsl-stylesheets
+#XSLSTYLESHEET_DIR=/sw/share/xml/xsl/docbook-xsl
pylith_userguide.pdf pdf: pylith_userguide.fo
fop $< pylith_userguide.pdf
Modified: short/3D/PyLith/branches/pylith-0.8/doc/userguide/materials/materials.xml
===================================================================
--- short/3D/PyLith/branches/pylith-0.8/doc/userguide/materials/materials.xml 2006-06-19 21:24:33 UTC (rev 3820)
+++ short/3D/PyLith/branches/pylith-0.8/doc/userguide/materials/materials.xml 2006-06-20 00:07:17 UTC (rev 3821)
@@ -1,7 +1,7 @@
<?xml version="1.0"?>
<!DOCTYPE chapter PUBLIC "-//OASIS//DTD DocBook XML V4.4//EN"
"http://www.oasis-open.org/docbook/xml/4.4/docbookx.dtd">
-<chapter id="materials">
+<chapter id="chapter_materials">
<title>Material Models</title>
<xi:include
Modified: short/3D/PyLith/branches/pylith-0.8/doc/userguide/materials/maxwell_linear.xml
===================================================================
--- short/3D/PyLith/branches/pylith-0.8/doc/userguide/materials/maxwell_linear.xml 2006-06-19 21:24:33 UTC (rev 3820)
+++ short/3D/PyLith/branches/pylith-0.8/doc/userguide/materials/maxwell_linear.xml 2006-06-20 00:07:17 UTC (rev 3821)
@@ -1,7 +1,7 @@
<?xml version="1.0"?>
<!DOCTYPE section PUBLIC "-//OASIS//DTD DocBook XML V4.4//EN"
"http://www.oasis-open.org/docbook/xml/4.4/docbookx.dtd">
-<section id="maxwelllinear">
+<section id="section_maxwell_linear">
<title>Maxwell Linear Viscoelastic Material</title>
</section>
Modified: short/3D/PyLith/branches/pylith-0.8/doc/userguide/preface.xml
===================================================================
--- short/3D/PyLith/branches/pylith-0.8/doc/userguide/preface.xml 2006-06-19 21:24:33 UTC (rev 3820)
+++ short/3D/PyLith/branches/pylith-0.8/doc/userguide/preface.xml 2006-06-20 00:07:17 UTC (rev 3821)
@@ -41,7 +41,7 @@
is essential that you recognize these individuals in the
normal scientific practice by citing the appropriate peer
reviewed papers and making appropriate acknowledgements in
- talks and publications. Citation information ...
+ talks and publications. NEED CITATION INFORMATION
</para>
</section>
Modified: short/3D/PyLith/branches/pylith-0.8/doc/userguide/pylith.xml
===================================================================
--- short/3D/PyLith/branches/pylith-0.8/doc/userguide/pylith.xml 2006-06-19 21:24:33 UTC (rev 3820)
+++ short/3D/PyLith/branches/pylith-0.8/doc/userguide/pylith.xml 2006-06-20 00:07:17 UTC (rev 3821)
@@ -1,7 +1,7 @@
<?xml version="1.0"?>
<!DOCTYPE part PUBLIC "-//OASIS//DTD DocBook XML V4.4//EN"
"http://www.oasis-open.org/docbook/xml/4.4/docbookx.dtd">
-<part id="pylith">
+<part id="part_pylith">
<title>PyLith</title>
<xi:include
Modified: short/3D/PyLith/branches/pylith-0.8/doc/userguide/pylith_userguide.xml
===================================================================
--- short/3D/PyLith/branches/pylith-0.8/doc/userguide/pylith_userguide.xml 2006-06-19 21:24:33 UTC (rev 3820)
+++ short/3D/PyLith/branches/pylith-0.8/doc/userguide/pylith_userguide.xml 2006-06-20 00:07:17 UTC (rev 3821)
@@ -1,7 +1,7 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE book PUBLIC "-//OASIS//DTD DocBook XML V4.3//EN"
"http://www.oasis-open.org/docbook/xml/4.4/docbookx.dtd">
-<book id="PyLithManual" lang="en">
+<book id="pylith_userguide" lang="en">
<bookinfo>
<title>PyLith User Manual</title>
<authorgroup>
Modified: short/3D/PyLith/branches/pylith-0.8/doc/userguide/runpylith/runpylith.xml
===================================================================
--- short/3D/PyLith/branches/pylith-0.8/doc/userguide/runpylith/runpylith.xml 2006-06-19 21:24:33 UTC (rev 3820)
+++ short/3D/PyLith/branches/pylith-0.8/doc/userguide/runpylith/runpylith.xml 2006-06-20 00:07:17 UTC (rev 3821)
@@ -1,7 +1,7 @@
<?xml version="1.0"?>
<!DOCTYPE chapter PUBLIC "-//OASIS//DTD DocBook XML V4.4//EN"
"http://www.oasis-open.org/docbook/xml/4.4/docbookx.dtd">
-<chapter id="runpylith">
+<chapter id="chapter_runpylith">
<title>Running PyLith</title>
<!-- SECTION +++++++++++++++++++++++++++++++++++++++++++++++++++ -->
@@ -34,7 +34,9 @@
PyLith gets its input from a variety of files. Most of these are
associated with different kinds of boundary conditions. As a
result only six are required. The remaining files are only used
- when the associated boundary condition is used.
+ when the associated boundary condition is used. See <xref
+ linkend="chapter_fileformats" /> for a detailed discussion of
+ the file formats.
</para>
<para>
The first step in the simulation process involves partitioning
@@ -213,6 +215,9 @@
"--scanner.help-properties" command-line argument.
</para>
<para>
+ ADD SOME EXAMPLES HERE
+ </para>
+ <para>
CHARLES- ADD DOCUMENTATION FOR EACH OF THE SCANNER PROPERTIES
BY ADDING A LINES IN THE INVENTORY OF THE FORM
property.meta['tip']="yada yada yada."
Modified: short/3D/PyLith/branches/pylith-0.8/doc/userguide/tutorials/tutorialbm5.xml
===================================================================
--- short/3D/PyLith/branches/pylith-0.8/doc/userguide/tutorials/tutorialbm5.xml 2006-06-19 21:24:33 UTC (rev 3820)
+++ short/3D/PyLith/branches/pylith-0.8/doc/userguide/tutorials/tutorialbm5.xml 2006-06-20 00:07:17 UTC (rev 3821)
@@ -1,7 +1,7 @@
<?xml version="1.0"?>
<!DOCTYPE section PUBLIC "-//OASIS//DTD DocBook XML V4.4//EN"
"http://www.oasis-open.org/docbook/xml/4.4/docbookx.dtd">
-<section id="tutorialbm5">
+<section id="section_tutorial_scecbm5">
<title>Tutorial Using SCEC Benchmark 5</title>
<!-- SECTION +++++++++++++++++++++++++++++++++++++++++++++++++++ -->
Modified: short/3D/PyLith/branches/pylith-0.8/doc/userguide/tutorials/tutorials.xml
===================================================================
--- short/3D/PyLith/branches/pylith-0.8/doc/userguide/tutorials/tutorials.xml 2006-06-19 21:24:33 UTC (rev 3820)
+++ short/3D/PyLith/branches/pylith-0.8/doc/userguide/tutorials/tutorials.xml 2006-06-20 00:07:17 UTC (rev 3821)
@@ -1,7 +1,7 @@
<?xml version="1.0"?>
<!DOCTYPE chapter PUBLIC "-//OASIS//DTD DocBook XML V4.4//EN"
"http://www.oasis-open.org/docbook/xml/4.4/docbookx.dtd">
-<chapter id="tutorials">
+<chapter id="chapter_tutorials">
<title>Tutorials</title>
<xi:include
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