[cig-commits] r3900 - in long/3D/Gale/trunk/src/Underworld: .
InputFiles/BaseApps InputFiles/Underworld_Components
InputFiles/Viewports InputFiles/tests InputFiles/tests/expected
InputFiles/tests/expected/testRayleighTaylor2D.0of1
InputFiles/tests/output Rheology/src Rheology/tests/expected
Rheology/tests/testDirector Rheology/tests/testYieldCriterion
Utils/src plugins plugins/Application plugins/MovingMesh
plugins/MovingMesh/tests plugins/MovingMesh/tests/expected
plugins/MovingMesh/tests/log plugins/MovingMesh/tests/output
plugins/MovingMesh/tests/plugins plugins/Output
plugins/Output/Nusselt_deltaT plugins/Output/Shfl src
walter at geodynamics.org
walter at geodynamics.org
Wed Jun 28 03:06:10 PDT 2006
Author: walter
Date: 2006-06-28 03:06:01 -0700 (Wed, 28 Jun 2006)
New Revision: 3900
Added:
long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/RatioViscosityField.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/ViscousDissipationField.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/MeltFractionVP.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/ParticleMeltFlagVP.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/RatioViscosityVP.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/ViscousDissipationVP.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.StG_FEM_CompareFeVariableAgainstReferenceSolution.dat.expected
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1/
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1/PressureField-Reference.00005.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1/StrainRateField-Reference.00005.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1/StrainRateInvariantField-Reference.00005.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1/VelocityField-Reference.00005.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1/VelocityGradientsField-Reference.00005.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1/VelocityMagnitudeField-Reference.00005.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1/VelocitySquaredField-Reference.00005.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1/VorticityField-Reference.00005.dat
long/3D/Gale/trunk/src/Underworld/plugins/Application/
long/3D/Gale/trunk/src/Underworld/plugins/Application/Application.c
long/3D/Gale/trunk/src/Underworld/plugins/Application/Application.h
long/3D/Gale/trunk/src/Underworld/plugins/Application/makefile
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-extendX-squashY-ignoreZ.0of1.output.dat.expected
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-extendX-squashY-ignoreZ.0of2.output.dat.expected
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-extendX-squashY-squashZ.0of1.output.dat.expected
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-extendX-squashY-squashZ.0of2.output.dat.expected
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-extendX-squashY.0of1.output.dat.expected
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-extendX-squashY.0of2.output.dat.expected
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-irregularCausingBCs.0of1.errorStream.txt.expected
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-normalX-ignoreY.0of1.output.dat.expected
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-normalX-ignoreY.0of2.output.dat.expected
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-normalX.0of1.output.dat.expected
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-normalX.0of2.output.dat.expected
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-extendX-squashY-ignoreZ.0of1.sh
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-extendX-squashY-ignoreZ.0of2.sh
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-extendX-squashY-squashZ.0of1.sh
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-extendX-squashY-squashZ.0of2.sh
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-extendX-squashY.0of1.sh
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-extendX-squashY.0of2.sh
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-irregularCausingBCs.0of1.sh
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-normalX-ignoreY.0of1.sh
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-normalX-ignoreY.0of2.sh
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-normalX.0of1.sh
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-normalX.0of2.sh
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/velocityICsAndBCs.extensionX-squashY-squashZ.xml
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/velocityICsAndBCs.extensionX-squashY.xml
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/velocityICsAndBCs.irregularCausing.xml
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/velocityICsAndBCs.normalExtensionX.xml
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/window.xml
long/3D/Gale/trunk/src/Underworld/plugins/Output/Nusselt_deltaT/
long/3D/Gale/trunk/src/Underworld/plugins/Output/Nusselt_deltaT/Nusselt_deltaT.c
long/3D/Gale/trunk/src/Underworld/plugins/Output/Nusselt_deltaT/Nusselt_deltaT.h
long/3D/Gale/trunk/src/Underworld/plugins/Output/Nusselt_deltaT/makefile
long/3D/Gale/trunk/src/Underworld/plugins/Output/Shfl/
long/3D/Gale/trunk/src/Underworld/plugins/Output/Shfl/Shfl.c
long/3D/Gale/trunk/src/Underworld/plugins/Output/Shfl/Shfl.h
long/3D/Gale/trunk/src/Underworld/plugins/Output/Shfl/makefile
Removed:
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.ballCentroid.dat.expected
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension.0of1.output.dat.expected
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension.0of2.output.dat.expected
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/output/lucWindow_0.mpeg
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension.0of1.sh
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension.0of2.sh
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/velocityIC.extension.xml
Modified:
long/3D/Gale/trunk/src/Underworld/
long/3D/Gale/trunk/src/Underworld/InputFiles/BaseApps/SPR_Setup.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/StressField2D.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/AnalyticPressureVP.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/AnalyticVelocityMagnitudeVP.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/PressureErrorVP.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/VelocityErrorMagnitudeVP.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/output/
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testRayleighTaylor2D.0of1.sh
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testRayleighTaylorBenchmark.xml
long/3D/Gale/trunk/src/Underworld/Rheology/src/Arrhenius.c
long/3D/Gale/trunk/src/Underworld/Rheology/src/Compressible.c
long/3D/Gale/trunk/src/Underworld/Rheology/src/ConstitutiveMatrix.c
long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testConstitutiveMatrixCartesian2D.0of1.output.dat.expected
long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testConstitutiveMatrixCartesian3D.0of1.output.dat.expected
long/3D/Gale/trunk/src/Underworld/Rheology/tests/testDirector/testDirector.c
long/3D/Gale/trunk/src/Underworld/Rheology/tests/testYieldCriterion/testYieldCriterion.c
long/3D/Gale/trunk/src/Underworld/Utils/src/Context.c
long/3D/Gale/trunk/src/Underworld/Utils/src/Context.h
long/3D/Gale/trunk/src/Underworld/Utils/src/PressureTemperatureOutput.c
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/MovingMesh.c
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/MovingMesh.h
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/Viewport.xml
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/log/
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/output/
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/plugins/testMovingMesh.c
long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testExtension.xml
long/3D/Gale/trunk/src/Underworld/src/main.c
Log:
Update to latest from Monash
Property changes on: long/3D/Gale/trunk/src/Underworld
___________________________________________________________________
Name: svk:merge
- 9570c393-cf10-0410-b476-9a651db1e55a:/cig:220
c24a034b-ab11-0410-afe6-cfe714e2959e:/trunk:192
+ 9570c393-cf10-0410-b476-9a651db1e55a:/cig:267
c24a034b-ab11-0410-afe6-cfe714e2959e:/trunk:221
Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/BaseApps/SPR_Setup.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/BaseApps/SPR_Setup.xml 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/BaseApps/SPR_Setup.xml 2006-06-28 10:06:01 UTC (rev 3900)
@@ -9,22 +9,29 @@
<param name="Dependency">decomp-linear</param>
<param name="DataType">Double</param>
<param name="Count">decomp-linear-nodeDomainCount</param>
- <param name="VectorComponentCount">3</param>
+ <param name="VectorComponentCount">6</param>
<list name="names">
<param>SRxx</param>
<param>SRyy</param>
+ <param>SRzz</param>
<param>SRxy</param>
+ <param>SRxz</param>
+ <param>SRyz</param>
</list>
+
</struct>
<struct name="srDofLayout">
<param name="Type">DofLayout</param>
<param name="Count">decomp-linear-nodeDomainCount</param>
- <param name="BaseVariableCount">3</param>
- <list name="BaseVariables">
- <param>SRxx</param>
- <param>SRyy</param>
- <param>SRxy</param>
- </list>
+ <param name="BaseVariableCount">6</param>
+ <list name="BaseVariables">
+ <param>SRxx</param>
+ <param>SRyy</param>
+ <param>SRzz</param>
+ <param>SRxy</param>
+ <param>SRxz</param>
+ <param>SRyz</param>
+ </list>
</struct>
<struct name="recoveredStrainRate">
Added: long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/RatioViscosityField.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/RatioViscosityField.xml 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/RatioViscosityField.xml 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,12 @@
+<StGermainData xmlns="http://www.vpac.org/StGermain/XML_IO_Handler/Jun2003">
+ <struct name="components" mergeType="merge">
+ <struct name="RatioViscosityField">
+ <param name="Type">RatioViscosityField</param>
+ <param name="Swarm">gaussSwarm</param>
+ <param name="Mesh">mesh-linear</param>
+ <param name="Context">context</param>
+ <param name="ConstitutiveMatrix">constitutiveMatrix</param>
+ <param name="MultiRheologyMaterial">material</param>
+ </struct>
+ </struct>
+</StGermainData>
Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/StressField2D.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/StressField2D.xml 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/StressField2D.xml 2006-06-28 10:06:01 UTC (rev 3900)
@@ -7,6 +7,7 @@
<param name="Swarm">materialPoints</param>
<param name="Mesh">mesh-linear</param>
<param name="ConstitutiveMatrix">constitutiveMatrix</param>
+ <param name="StressVariable">materialSwarm-Stress</param>
</struct>
<struct name="StressInvariantField">
<param name="Type">OperatorFeVariable</param>
Added: long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/ViscousDissipationField.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/ViscousDissipationField.xml 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/ViscousDissipationField.xml 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,12 @@
+<StGermainData xmlns="http://www.vpac.org/StGermain/XML_IO_Handler/Jun2003">
+ <struct name="components" mergeType="merge">
+ <struct name="ViscousDissipationField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TensorInnerProduct</param>
+ <list name="FeVariables">
+ <param>StrainRateField</param>
+ <param>StressField</param>
+ </list>
+ </struct>
+ </struct>
+</StGermainData>
Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/AnalyticPressureVP.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/AnalyticPressureVP.xml 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/AnalyticPressureVP.xml 2006-06-28 10:06:01 UTC (rev 3900)
@@ -4,6 +4,11 @@
<StGermainData xmlns="http://www.vpac.org/StGermain/XML_IO_Handler/Jun2003">
<struct name="components" mergeType="merge">
+ <struct name="camera" mergeType="replace">
+ <param name="Type">lucCamera</param>
+ <param name="CentreFieldVariable">PressureField-Analytic</param>
+ <param name="coordZ">1.5</param>
+ </struct>
<struct name="analyticPressureColourMap">
<param name="Type">lucColourMap</param>
<param name="colours">Black Purple DarkRed Orange Yellow</param>
@@ -12,7 +17,7 @@
<!-- Drawing Objects -->
<struct name="analyticPressureMap">
<param name="Type">lucScalarField</param>
- <param name="FieldVariable">AnalyticPressureField</param>
+ <param name="FieldVariable">PressureField-Analytic</param>
<param name="ColourMap">analyticPressureColourMap</param>
</struct>
<struct name="analyticPressureColourBar">
Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/AnalyticVelocityMagnitudeVP.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/AnalyticVelocityMagnitudeVP.xml 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/AnalyticVelocityMagnitudeVP.xml 2006-06-28 10:06:01 UTC (rev 3900)
@@ -12,17 +12,19 @@
<!-- Drawing Objects -->
<struct name="analyticVelocityMagnitudeMap">
<param name="Type">lucScalarField</param>
- <param name="FieldVariable">AnalyticVelocityMagnitudeField</param>
+ <param name="FieldVariable">VelocityField-Analytic-Magnitude</param>
<param name="ColourMap">analyticVelocityMagnitudeColourMap</param>
<param name="resolution">128</param>
</struct>
+ <!--
<struct name="analyticVelocityArrows">
<param name="Type">lucVectorArrows</param>
- <param name="VectorVariable">AnalyticVelocityField</param>
+ <param name="VectorVariable">VelocityField</param>
<param name="Colour">black</param>
<param name="arrowHeadSize">0.15</param>
<param name="lengthScale">0.15</param>
</struct>
+ -->
<struct name="analyticVelocityMagnitudeColourBar">
<param name="Type">lucColourBar</param>
<param name="ColourMap">analyticVelocityMagnitudeColourMap</param>
@@ -34,7 +36,7 @@
<list name="DrawingObject">
<param>analyticVelocityMagnitudeMap</param>
<param>border</param>
- <param>analyticVelocityArrows</param>
+ <!--param>analyticVelocityArrows</param-->
<param>analyticVelocityMagnitudeColourBar</param>
</list>
</struct>
Added: long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/MeltFractionVP.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/MeltFractionVP.xml 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/MeltFractionVP.xml 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,42 @@
+<?xml version="1.0"?>
+<!DOCTYPE StGermainData SYSTEM "stgermain.dtd">
+
+<StGermainData xmlns="http://www.vpac.org/StGermain/XML_IO_Handler/Jun2003">
+
+ <struct name="components" mergeType="merge">
+ <struct name="camera" mergeType="replace">
+ <param name="Type">lucCamera</param>
+ <param name="CentreFieldVariable">MeltFractionField</param>
+ <param name="coordZ">1.5</param>
+ </struct>
+ <struct name="meltFractionColourMap">
+ <param name="Type">lucColourMap</param>
+ <param name="colours">Black Purple Red Orange Yellow</param>
+ <param name="dynamicRange">true</param>
+ </struct>
+ <!-- Drawing Objects -->
+ <struct name="meltFractionMap">
+ <param name="Type">lucScalarField</param>
+ <param name="FieldVariable">MeltFractionField</param>
+ <param name="ColourMap">meltFractionColourMap</param>
+ </struct>
+ <struct name="border" mergeType="replace">
+ <param name="Type">lucFieldVariableBorder</param>
+ <param name="FieldVariable">MeltFractionField</param>
+ </struct>
+ <struct name="meltFractionColourBar">
+ <param name="Type">lucColourBar</param>
+ <param name="ColourMap">meltFractionColourMap</param>
+ </struct>
+ <!-- Put these althogether in a viewport -->
+ <struct name="MeltFractionVP">
+ <param name="Type">lucViewport</param>
+ <param name="Camera">camera</param>
+ <list name="DrawingObject">
+ <param>meltFractionMap</param>
+ <param>border</param>
+ <param>meltFractionColourBar</param>
+ </list>
+ </struct>
+ </struct>
+</StGermainData>
Added: long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/ParticleMeltFlagVP.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/ParticleMeltFlagVP.xml 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/ParticleMeltFlagVP.xml 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,42 @@
+<!-- Rayleigh-Taylor lucifer viewports -->
+<!-- DTD to validate against -->
+<StGermainData xmlns="http://www.vpac.org/StGermain/XML_IO_Handler/Jun2003">
+
+ <struct name="components" mergeType="merge">
+ <!-- Camera And Colour Maps -->
+ <struct name="camera" mergeType="replace">
+ <param name="Type">lucCamera</param>
+ <param name="CentreFieldVariable">VelocityField</param>
+ <param name="coordZ">1.4762</param>
+ </struct>
+ <struct name="meltFlagColourMap">
+ <param name="Type">lucColourMap</param>
+ <param name="colours">Red Green Brown</param>
+ <param name="dynamicRange">false</param>
+ <param name="minimum">0</param>
+ <param name="maximum">2</param>
+ </struct>
+ <!-- Drawing Objects -->
+ <struct name="particleMeltFlagSwarmViewer">
+ <param name="Type">lucSwarmViewer</param>
+ <param name="Swarm">geochemSwarm</param>
+ <param name="ColourVariable">geochemSwarm-MeltFlag</param>
+ <param name="ColourMap">meltFlagColourMap</param>
+ <param name="pointSize">2.0</param>
+ </struct>
+ <struct name="border" mergeType="replace">
+ <param name="Type">lucFieldVariableBorder</param>
+ <param name="FieldVariable">VelocityField</param>
+ </struct>
+ <!-- Viewport -->
+ <struct name="ParticleMeltFlagVP">
+ <param name="Type">lucViewport</param>
+ <param name="Camera">camera</param>
+ <list name="DrawingObject">
+ <param>particleMeltFlagSwarmViewer</param>
+ <param>border</param>
+ </list>
+ </struct>
+ </struct>
+
+</StGermainData>
Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/PressureErrorVP.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/PressureErrorVP.xml 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/PressureErrorVP.xml 2006-06-28 10:06:01 UTC (rev 3900)
@@ -12,7 +12,7 @@
<!-- Drawing Objects -->
<struct name="pressureErrorMap">
<param name="Type">lucScalarField</param>
- <param name="FieldVariable">ErrorPressureFieldMagnitude</param>
+ <param name="FieldVariable">PressureField-ErrorMagnitudeField</param>
<param name="ColourMap">pressureErrorColourMap</param>
<param name="resolution">128</param>
</struct>
Added: long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/RatioViscosityVP.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/RatioViscosityVP.xml 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/RatioViscosityVP.xml 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,43 @@
+<?xml version="1.0"?>
+<!DOCTYPE StGermainData SYSTEM "stgermain.dtd">
+
+<StGermainData xmlns="http://www.vpac.org/StGermain/XML_IO_Handler/Jun2003">
+
+ <struct name="components" mergeType="merge">
+ <struct name="camera" mergeType="replace">
+ <param name="Type">lucCamera</param>
+ <param name="CentreFieldVariable">RatioViscosityField</param>
+ <param name="coordZ">1.5</param>
+ </struct>
+ <struct name="ratioViscosityColourMap">
+ <param name="Type">lucColourMap</param>
+ <param name="colours">Green Brown Grey Purple Violet Black</param>
+ <param name="logScale">True</param>
+ <param name="dynamicRange">true</param>
+ </struct>
+ <!-- Drawing Objects -->
+ <struct name="ratioViscosityMap">
+ <param name="Type">lucScalarField</param>
+ <param name="FieldVariable">RatioViscosityField</param>
+ <param name="ColourMap">ratioViscosityColourMap</param>
+ </struct>
+ <struct name="ratioBorder" mergeType="replace">
+ <param name="Type">lucFieldVariableBorder</param>
+ <param name="FieldVariable">RatioViscosityField</param>
+ </struct>
+ <struct name="ratioViscosityColourBar">
+ <param name="Type">lucColourBar</param>
+ <param name="ColourMap">ratioViscosityColourMap</param>
+ </struct>
+ <!-- Put these althogether in a viewport -->
+ <struct name="RatioViscosityVP">
+ <param name="Type">lucViewport</param>
+ <param name="Camera">camera</param>
+ <list name="DrawingObject">
+ <param>ratioViscosityMap</param>
+ <param>ratioBorder</param>
+ <param>ratioViscosityColourBar</param>
+ </list>
+ </struct>
+ </struct>
+</StGermainData>
Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/VelocityErrorMagnitudeVP.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/VelocityErrorMagnitudeVP.xml 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/VelocityErrorMagnitudeVP.xml 2006-06-28 10:06:01 UTC (rev 3900)
@@ -12,7 +12,7 @@
<!-- Drawing Objects -->
<struct name="velocityErrorMagnitudeMap">
<param name="Type">lucScalarField</param>
- <param name="FieldVariable">ErrorVelocityFieldMagnitude</param>
+ <param name="FieldVariable">VelocityField-ErrorMagnitudeField</param>
<param name="ColourMap">velocityErrorMagnitudeColourMap</param>
<param name="resolution">128</param>
</struct>
Added: long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/ViscousDissipationVP.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/ViscousDissipationVP.xml 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/ViscousDissipationVP.xml 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,42 @@
+<?xml version="1.0"?>
+<!DOCTYPE StGermainData SYSTEM "stgermain.dtd">
+
+<StGermainData xmlns="http://www.vpac.org/StGermain/XML_IO_Handler/Jun2003">
+
+ <struct name="components" mergeType="merge">
+ <struct name="camera" mergeType="replace">
+ <param name="Type">lucCamera</param>
+ <param name="CentreFieldVariable">ViscousDissipationField</param>
+ <param name="coordZ">1.5</param>
+ </struct>
+ <struct name="viscousDissipationInvColourMap">
+ <param name="Type">lucColourMap</param>
+ <param name="colours">#000000 #00ffd8 #00ff56 #10ff00 #73ff00 #e1ff00 #ffa800 #ff5100 #ff0011</param>
+ <param name="dynamicRange">True</param>
+ </struct>
+ <!-- Drawing Objects -->
+ <struct name="viscousDissipationInvMap">
+ <param name="Type">lucScalarField</param>
+ <param name="FieldVariable">ViscousDissipationField</param>
+ <param name="ColourMap">viscousDissipationInvColourMap</param>
+ </struct>
+ <struct name="border" mergeType="replace">
+ <param name="Type">lucFieldVariableBorder</param>
+ <param name="FieldVariable">ViscousDissipationField</param>
+ </struct>
+ <struct name="viscousDissipationInvColourBar">
+ <param name="Type">lucColourBar</param>
+ <param name="ColourMap">viscousDissipationInvColourMap</param>
+ </struct>
+ <!-- Put these althogether in a viewport -->
+ <struct name="ViscousDissipationVP">
+ <param name="Type">lucViewport</param>
+ <param name="Camera">camera</param>
+ <list name="DrawingObject">
+ <param>viscousDissipationInvMap</param>
+ <param>border</param>
+ <param>viscousDissipationInvColourBar</param>
+ </list>
+ </struct>
+ </struct>
+</StGermainData>
Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1/PressureField-Reference.00005.dat
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1/PressureField-Reference.00005.dat 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1/PressureField-Reference.00005.dat 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,1024 @@
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Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1/StrainRateField-Reference.00005.dat
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1/StrainRateField-Reference.00005.dat 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1/StrainRateField-Reference.00005.dat 2006-06-28 10:06:01 UTC (rev 3900)
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Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1/StrainRateInvariantField-Reference.00005.dat
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1/StrainRateInvariantField-Reference.00005.dat 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1/StrainRateInvariantField-Reference.00005.dat 2006-06-28 10:06:01 UTC (rev 3900)
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===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1/VelocityField-Reference.00005.dat 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1/VelocityField-Reference.00005.dat 2006-06-28 10:06:01 UTC (rev 3900)
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===================================================================
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===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1/VelocityMagnitudeField-Reference.00005.dat 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1/VelocityMagnitudeField-Reference.00005.dat 2006-06-28 10:06:01 UTC (rev 3900)
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Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1/VelocitySquaredField-Reference.00005.dat
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1/VelocitySquaredField-Reference.00005.dat 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1/VelocitySquaredField-Reference.00005.dat 2006-06-28 10:06:01 UTC (rev 3900)
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Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1/VorticityField-Reference.00005.dat
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1/VorticityField-Reference.00005.dat 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1/VorticityField-Reference.00005.dat 2006-06-28 10:06:01 UTC (rev 3900)
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+1030 0.21875 0.96875 0 0 0.000922768 -0.000922768 0
+1031 0.25 0.96875 0 0 0.00111369 -0.00111369 0
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+1039 0.5 0.96875 0 0 -0.000445308 0.000445308 0
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+1043 0.625 0.96875 0 0 -0.00123273 0.00123273 0
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+1052 0.90625 0.96875 0 0 -0.000347101 0.000347101 0
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+1056 0 1 0 0 0 -0 0
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+1058 0.0625 1 0 0 7.75247e-05 -7.75247e-05 0
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+1060 0.125 1 0 0 0.000139516 -0.000139516 0
+1061 0.15625 1 0 0 5.88407e-05 -5.88407e-05 0
+1062 0.1875 1 0 0 9.79838e-05 -9.79838e-05 0
+1063 0.21875 1 0 0 5.90265e-05 -5.90265e-05 0
+1064 0.25 1 0 0 3.46248e-06 -3.46248e-06 0
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+1066 0.3125 1 0 0 -8.5772e-05 8.5772e-05 0
+1067 0.34375 1 0 0 -0.00012366 0.00012366 0
+1068 0.375 1 0 0 -0.000169774 0.000169774 0
+1069 0.40625 1 0 0 -0.000161324 0.000161324 0
+1070 0.4375 1 0 0 -0.000148544 0.000148544 0
+1071 0.46875 1 0 0 -0.00013405 0.00013405 0
+1072 0.5 1 0 0 -0.000129985 0.000129985 0
+1073 0.53125 1 0 0 0.000152843 -0.000152843 0
+1074 0.5625 1 0 0 0.000259144 -0.000259144 0
+1075 0.59375 1 0 0 0.000157229 -0.000157229 0
+1076 0.625 1 0 0 0.000154733 -0.000154733 0
+1077 0.65625 1 0 0 0.000147057 -0.000147057 0
+1078 0.6875 1 0 0 0.000145084 -0.000145084 0
+1079 0.71875 1 0 0 -3.74049e-05 3.74049e-05 0
+1080 0.75 1 0 0 -2.44573e-05 2.44573e-05 0
+1081 0.78125 1 0 0 -9.69317e-05 9.69317e-05 0
+1082 0.8125 1 0 0 -6.72788e-05 6.72788e-05 0
+1083 0.84375 1 0 0 -5.7171e-05 5.7171e-05 0
+1084 0.875 1 0 0 -0.00010703 0.00010703 0
+1085 0.90625 1 0 0 -0.00015925 0.00015925 0
+1086 0.9375 1 0 0 -2.95743e-05 2.95743e-05 0
+1087 0.96875 1 0 0 -4.6025e-05 4.6025e-05 0
+1088 1 1 0 0 0 -0 0
Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.StG_FEM_CompareFeVariableAgainstReferenceSolution.dat.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.StG_FEM_CompareFeVariableAgainstReferenceSolution.dat.expected 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.StG_FEM_CompareFeVariableAgainstReferenceSolution.dat.expected 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,2 @@
+Timestep 5: Total integrated value of 'PressureField-ErrorMagnitudeField' is within a tolerance 0.005.
+Timestep 5: Total integrated value of 'VelocityField-ErrorMagnitudeField' is within a tolerance 5e-06.
Deleted: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.ballCentroid.dat.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.ballCentroid.dat.expected 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.ballCentroid.dat.expected 2006-06-28 10:06:01 UTC (rev 3900)
@@ -1,2 +0,0 @@
-# Timestep Time Volume CentroidX CentroidY CentroidZ
- 1 0 0.0311914 0.499748 0.700875 0
Property changes on: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/output
___________________________________________________________________
Name: svn:ignore
+ *
Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testRayleighTaylor2D.0of1.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testRayleighTaylor2D.0of1.sh 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testRayleighTaylor2D.0of1.sh 2006-06-28 10:06:01 UTC (rev 3900)
@@ -9,4 +9,4 @@
setUpdateModeFromArg ${1}
testname="`basename $0 .sh`"
-runAndHandleSystemTestStdLocations "Underworld testRayleighTaylorBenchmark.xml --interactive=False --maxTimeSteps=1" "$0" "$@"
+runAndHandleSystemTestStdLocations "Underworld testRayleighTaylorBenchmark.xml --interactive=False --maxTimeSteps=5 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./expected/testRayleighTaylor2D.0of1" "$0" "$@"
Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testRayleighTaylorBenchmark.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testRayleighTaylorBenchmark.xml 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testRayleighTaylorBenchmark.xml 2006-06-28 10:06:01 UTC (rev 3900)
@@ -10,7 +10,8 @@
<param>StG_FEM_FrequentOutput</param>
<param>Underworld_Vrms</param>
<param>StG_FEM_CPUTime</param>
- <param>PICellerator_MaterialCentroid</param>
+ <param>PICellerator_MaterialCentroid</param>
+<!-- <param>StG_FEM_CompareFeVariableAgainstReferenceSolution</param>-->
</list>
<struct name="components" mergeType="merge">
@@ -50,11 +51,12 @@
<param name="Swarm">materialSwarm</param>
<param name="newFileEachTime">false</param>
</struct>
- <struct name="materialPointsParticleLayout" mergeType="replace">
+ <struct name="integrationPointsParticleLayout" mergeType="replace">
<param name="Type">FileParticleLayout</param>
<param name="filename">./output/materialSwarm.dat</param>
</struct>
-->
+
</struct>
<param name="journal.info.Context-verbose">true</param>
@@ -67,7 +69,7 @@
<!-- general simulation parameters -->
<param name="maxTimeSteps"> 300 </param>
- <param name="dumpEvery"> 1 </param>
+ <param name="dumpEvery"> 5 </param>
<param name="checkpointEvery"> 1 </param>
<param name="outputPath"> ./output </param>
<param name="gravity"> 1.0 </param>
@@ -101,6 +103,13 @@
<param name="CentroidMaterial">ball</param>
-
-
+
+ <struct name="StG_FEM_CompareFeVariableAgainstReferenceSolution">
+ <list name="variables">
+ <param>PressureField</param>
+ <param>VelocityField</param>
+ </list>
+<!-- <param name="referencePath">./expected/testRayleighTaylor2D.0of1</param>-->
+ <param name="VelocityField-tolerance">0.000005</param>
+ </struct>
</StGermainData>
Modified: long/3D/Gale/trunk/src/Underworld/Rheology/src/Arrhenius.c
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Rheology/src/Arrhenius.c 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/Rheology/src/Arrhenius.c 2006-06-28 10:06:01 UTC (rev 3900)
@@ -172,16 +172,19 @@
/* Calculate Parameters */
FeVariable_InterpolateWithinElement( temperatureField, lElement_I, xi, &temperature );
+
+ /* If activationVolume is 0 there is no need to calculate the depth of the particle see viscosity line below. */
+ if( activationVolume != 0.0 ) {
+ /* Calculate Depth */
+ height = self->blockGeometry->max[ J_AXIS ];
- /* Calculate Depth */
- height = self->blockGeometry->max[ J_AXIS ];
+ /* This rheology assumes particle is an integration points thats can be mapped to a particle
+ * that has no meaningful coord. Best to re-calc the global from local */
+ FiniteElement_Mesh_CalcGlobalCoordFromLocalCoord( swarm->mesh, swarm->dim, lElement_I, xi, coord );
+ depth = height - coord[ J_AXIS ];
+ /*depth = height - materialPoint->coord[ J_AXIS ];*/
+ }
- /* This rheology assumes particle is an integration points thats can be mapped to a particle
- * that has no meaningful coord. Best to re-calc the global from local */
- FiniteElement_Mesh_CalcGlobalCoordFromLocalCoord( swarm->mesh, swarm->dim, lElement_I, xi, coord );
- depth = height - coord[ J_AXIS ];
- /*depth = height - materialPoint->coord[ J_AXIS ];*/
-
/* Calculate New Viscosity */
viscosity = eta0 * exp(( activationEnergy + activationVolume * depth)/ (temperature + referenceTemp));
ConstitutiveMatrix_SetIsotropicViscosity( constitutiveMatrix, viscosity );
Modified: long/3D/Gale/trunk/src/Underworld/Rheology/src/Compressible.c
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Rheology/src/Compressible.c 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/Rheology/src/Compressible.c 2006-06-28 10:06:01 UTC (rev 3900)
@@ -155,6 +155,10 @@
geometryMesh,
materials_Register,
Stg_ComponentFactory_GetDouble( cf, self->name, "oneOnLambda", 10.0 ) );
+
+ /* Make sure that we are using the correct type of swarm
+ * SHOULDN'T THIS BEEN DONE AT THE STIFFNESSMATRIXTERM LEVEL? */
+ Stg_CheckType( self->integrationSwarm, IntegrationPointsSwarm );
}
void _Compressible_Build( void* compressible, void* data ){
@@ -173,7 +177,7 @@
void _Compressible_AssembleElement( void* compressible, StiffnessMatrix* stiffnessMatrix, Element_LocalIndex lElement_I, SystemLinearEquations* sle, double** elStiffMat )
{
Compressible* self = (Compressible*)compressible;
- IntegrationPointsSwarm* swarm = (IntegrationPointsSwarm*)self->integrationSwarm;
+ IntegrationPointsSwarm* swarm = (IntegrationPointsSwarm*) self->integrationSwarm;
RheologyMaterial* material;
FeVariable* variable1 = stiffnessMatrix->rowVariable;
Dimension_Index dim = stiffnessMatrix->dim;
@@ -204,10 +208,6 @@
/* Get number of particles per element */
cell_I = CellLayout_MapElementIdToCellId( swarm->cellLayout, lElement_I );
cellParticleCount = swarm->cellParticleCountTbl[ cell_I ];
-
- #ifdef DEBUG
- Stg_Class_CheckType( swarm, IntegrationPointsSwarm_Type );
- #endif
/* Loop over points to build Stiffness Matrix */
for ( cParticle_I = 0 ; cParticle_I < cellParticleCount ; cParticle_I++ ) {
Modified: long/3D/Gale/trunk/src/Underworld/Rheology/src/ConstitutiveMatrix.c
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Rheology/src/ConstitutiveMatrix.c 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/Rheology/src/ConstitutiveMatrix.c 2006-06-28 10:06:01 UTC (rev 3900)
@@ -231,6 +231,7 @@
Material_Index material_I;
Material_Index materialCount = Materials_Register_GetCount( self->materials_Register );
RheologyMaterial* material;
+ Stream* errorStream = Journal_Register( Error_Type, self->type );
_StiffnessMatrixTerm_Build( self, data );
@@ -240,6 +241,14 @@
for ( material_I = 0 ; material_I < materialCount ; material_I++ ) {
material = (RheologyMaterial*) Materials_Register_GetByIndex( self->materials_Register, material_I );
+ Journal_Firewall( Stg_Class_IsInstance( material, RheologyMaterial_Type ),
+ errorStream,
+ "Error - in %s(): while checking if each "
+ "RheologyMaterial is non-linear, found a material of type %s, which is "
+ "not a subclass of RheologyMaterial. Currently, if you wish to use the "
+ "underworld constitutive matrix to assemble over a swarm, _every_ material "
+ "must be a RheologyMaterial.\n", __func__, material->type );
+
if ( RheologyMaterial_IsNonLinear( material ) )
ConstitutiveMatrix_SetToNonLinear( self );
}
Modified: long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testConstitutiveMatrixCartesian2D.0of1.output.dat.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testConstitutiveMatrixCartesian2D.0of1.output.dat.expected 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testConstitutiveMatrixCartesian2D.0of1.output.dat.expected 2006-06-28 10:06:01 UTC (rev 3900)
@@ -1,37 +1,42 @@
Constitutive Matrix after initialisation.
-constitutiveMatrix = (ptr)0x8086f94
- StiffnessMatrixTerm (ptr): 0x8086f94
- Stg_Component (ptr): 0x8086f94
- Stg_Object (ptr): 0x8086f94
- Stg_Class (ptr): 0x8086f94
- sizeOfSelf: 148
+constitutiveMatrix = (ptr)0x8082010
+ StiffnessMatrixTerm (ptr): 0x8082010
+ Stg_Component (ptr): 0x8082010
+ Stg_Object (ptr): 0x8082010
+ Stg_Class (ptr): 0x8082010
+ sizeOfSelf: 176
_deleteSelf: Yes
type: ConstitutiveMatrixCartesian
- _delete (func ptr): 0xb7fd83e1
- _print (func ptr): 0xb7fd840a
+ _delete (func ptr): 0xb7f07b35
+ _print (func ptr): 0xb7f07b5e
_copy (func ptr): (nil)
name: constitutiveMatrix
nameAllocationType: NON_GLOBAL
- _defaultConstructor (func ptr): 0xb7fd843a
- _construct (func ptr): 0xb7fd850f
- _build (func ptr): 0xb7fd854a
- _initialise (func ptr): 0xb7fd857a
- _execute (func ptr): 0xb7fd85aa
- _destroy (func ptr): 0xb7fd85d4
+ _defaultConstructor (func ptr): 0xb7f07b8e
+ _construct (func ptr): 0xb7f07c63
+ _build (func ptr): 0xb7f07c9e
+ _initialise (func ptr): 0xb7f07cce
+ _execute (func ptr): 0xb7f07cfe
+ _destroy (func ptr): 0xb7f07d28
isConstructed: True
isBuilt: True
isInitialised: True
hasExecuted: False
isDestroyed: False
- integrationSwarm (ptr): 0x8088c04
+ constructor function name: constitutiveMatrix-Construct
+ build function name: constitutiveMatrix-Build
+ initialise function name: constitutiveMatrix-Initialise
+ execute function name: constitutiveMatrix-Execute
+ destroy function name: constitutiveMatrix-Destroy
+ integrationSwarm (ptr): 0x80822a0
extraInfo (ptr): (nil)
- self->_setValue = (ptr)0xb7fd8eaf
- self->_getViscosity = (ptr)0xb7fd9226
- self->_isotropicCorrection = (ptr)0xb7fd92ba
- self->_setSecondViscosity = (ptr)0xb7fd9464
- self->_assemble_D_B = (ptr)0xb7fd9d52
- self->_calculateStress = (ptr)0xb7fda5fd
- self->debug = (ptr)0x807827c
+ self->_setValue = (ptr)0xb7f08614
+ self->_getViscosity = (ptr)0xb7f08982
+ self->_isotropicCorrection = (ptr)0xb7f08a1f
+ self->_setSecondViscosity = (ptr)0xb7f08bc0
+ self->_assemble_D_B = (ptr)0xb7f094a5
+ self->_calculateStress = (ptr)0xb7f09d5f
+ self->debug = (ptr)0x80907f0
matrixData[ 0 ][ 0 ] = 0; matrixData[ 0 ][ 1 ] = 0; matrixData[ 0 ][ 2 ] = 0;
matrixData[ 1 ][ 0 ] = 0; matrixData[ 1 ][ 1 ] = 0; matrixData[ 1 ][ 2 ] = 0;
matrixData[ 2 ][ 0 ] = 0; matrixData[ 2 ][ 1 ] = 0; matrixData[ 2 ][ 2 ] = 0;
Modified: long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testConstitutiveMatrixCartesian3D.0of1.output.dat.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testConstitutiveMatrixCartesian3D.0of1.output.dat.expected 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testConstitutiveMatrixCartesian3D.0of1.output.dat.expected 2006-06-28 10:06:01 UTC (rev 3900)
@@ -1,37 +1,42 @@
Constitutive Matrix after initialisation.
-constitutiveMatrix = (ptr)0x8086fbc
- StiffnessMatrixTerm (ptr): 0x8086fbc
- Stg_Component (ptr): 0x8086fbc
- Stg_Object (ptr): 0x8086fbc
- Stg_Class (ptr): 0x8086fbc
- sizeOfSelf: 148
+constitutiveMatrix = (ptr)0x8078dd0
+ StiffnessMatrixTerm (ptr): 0x8078dd0
+ Stg_Component (ptr): 0x8078dd0
+ Stg_Object (ptr): 0x8078dd0
+ Stg_Class (ptr): 0x8078dd0
+ sizeOfSelf: 176
_deleteSelf: Yes
type: ConstitutiveMatrixCartesian
- _delete (func ptr): 0xb7fd83e1
- _print (func ptr): 0xb7fd840a
+ _delete (func ptr): 0xb7f43b35
+ _print (func ptr): 0xb7f43b5e
_copy (func ptr): (nil)
name: constitutiveMatrix
nameAllocationType: NON_GLOBAL
- _defaultConstructor (func ptr): 0xb7fd843a
- _construct (func ptr): 0xb7fd850f
- _build (func ptr): 0xb7fd854a
- _initialise (func ptr): 0xb7fd857a
- _execute (func ptr): 0xb7fd85aa
- _destroy (func ptr): 0xb7fd85d4
+ _defaultConstructor (func ptr): 0xb7f43b8e
+ _construct (func ptr): 0xb7f43c63
+ _build (func ptr): 0xb7f43c9e
+ _initialise (func ptr): 0xb7f43cce
+ _execute (func ptr): 0xb7f43cfe
+ _destroy (func ptr): 0xb7f43d28
isConstructed: True
isBuilt: True
isInitialised: True
hasExecuted: False
isDestroyed: False
- integrationSwarm (ptr): 0x8088c2c
+ constructor function name: constitutiveMatrix-Construct
+ build function name: constitutiveMatrix-Build
+ initialise function name: constitutiveMatrix-Initialise
+ execute function name: constitutiveMatrix-Execute
+ destroy function name: constitutiveMatrix-Destroy
+ integrationSwarm (ptr): 0x8082c18
extraInfo (ptr): (nil)
- self->_setValue = (ptr)0xb7fd8eaf
- self->_getViscosity = (ptr)0xb7fd9226
- self->_isotropicCorrection = (ptr)0xb7fd92ba
- self->_setSecondViscosity = (ptr)0xb7fd9464
- self->_assemble_D_B = (ptr)0xb7fd9d52
- self->_calculateStress = (ptr)0xb7fda5fd
- self->debug = (ptr)0x8078654
+ self->_setValue = (ptr)0xb7f44614
+ self->_getViscosity = (ptr)0xb7f44982
+ self->_isotropicCorrection = (ptr)0xb7f44a1f
+ self->_setSecondViscosity = (ptr)0xb7f44bc0
+ self->_assemble_D_B = (ptr)0xb7f454a5
+ self->_calculateStress = (ptr)0xb7f45d5f
+ self->debug = (ptr)0x8091908
matrixData[ 0 ][ 0 ] = 0; matrixData[ 0 ][ 1 ] = 0; matrixData[ 0 ][ 2 ] = 0; matrixData[ 0 ][ 3 ] = 0; matrixData[ 0 ][ 4 ] = 0; matrixData[ 0 ][ 5 ] = 0;
matrixData[ 1 ][ 0 ] = 0; matrixData[ 1 ][ 1 ] = 0; matrixData[ 1 ][ 2 ] = 0; matrixData[ 1 ][ 3 ] = 0; matrixData[ 1 ][ 4 ] = 0; matrixData[ 1 ][ 5 ] = 0;
matrixData[ 2 ][ 0 ] = 0; matrixData[ 2 ][ 1 ] = 0; matrixData[ 2 ][ 2 ] = 0; matrixData[ 2 ][ 3 ] = 0; matrixData[ 2 ][ 4 ] = 0; matrixData[ 2 ][ 5 ] = 0;
Modified: long/3D/Gale/trunk/src/Underworld/Rheology/tests/testDirector/testDirector.c
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Rheology/tests/testDirector/testDirector.c 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/Rheology/tests/testDirector/testDirector.c 2006-06-28 10:06:01 UTC (rev 3900)
@@ -68,7 +68,7 @@
Stream_RedirectFile_WithPrependedPath( stream, context->outputPath, "testDirector.dat" );
ContextEP_Append( context, AbstractContext_EP_FrequentOutput, Underworld_testDirector_Function );
- EP_AppendClassHook( Context_GetEntryPoint( context, FiniteElementContext_EP_SetDt ),
+ EP_AppendClassHook( Context_GetEntryPoint( context, FiniteElementContext_EP_CalcDt ),
Underworld_testDirector_dt, context );
}
Modified: long/3D/Gale/trunk/src/Underworld/Rheology/tests/testYieldCriterion/testYieldCriterion.c
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Rheology/tests/testYieldCriterion/testYieldCriterion.c 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/Rheology/tests/testYieldCriterion/testYieldCriterion.c 2006-06-28 10:06:01 UTC (rev 3900)
@@ -120,7 +120,7 @@
yieldRheology->_hasYielded = testYieldCriterion_HasYielded;
ContextEP_Append( context, AbstractContext_EP_Step, Underworld_testYieldCriterion_Check );
- EP_AppendClassHook( Context_GetEntryPoint( context, FiniteElementContext_EP_SetDt ),
+ EP_AppendClassHook( Context_GetEntryPoint( context, FiniteElementContext_EP_CalcDt ),
Underworld_testYieldCriterion_dt, context );
self->min[ I_AXIS ] = HUGE_VAL;
Modified: long/3D/Gale/trunk/src/Underworld/Utils/src/Context.c
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Utils/src/Context.c 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/Utils/src/Context.c 2006-06-28 10:06:01 UTC (rev 3900)
@@ -65,10 +65,10 @@
NULL,
_UnderworldContext_DefaultNew,
_UnderworldContext_ComponentConstruct,
- _UnderworldContext_ComponentBuild,
- _UnderworldContext_ComponentInitialise,
+ _AbstractContext_Build,
+ _AbstractContext_Initialise,
_UnderworldContext_ComponentExecute,
- _UnderworldContext_ComponentDestroy,
+ _AbstractContext_Destroy,
_UnderworldContext_SetDt,
name,
False,
@@ -93,10 +93,10 @@
NULL,
_UnderworldContext_DefaultNew,
_UnderworldContext_ComponentConstruct,
- _UnderworldContext_ComponentBuild,
- _UnderworldContext_ComponentInitialise,
+ _AbstractContext_Build,
+ _AbstractContext_Initialise,
_UnderworldContext_ComponentExecute,
- _UnderworldContext_ComponentDestroy,
+ _AbstractContext_Destroy,
_UnderworldContext_SetDt,
name,
True,
@@ -266,19 +266,7 @@
}
-void _UnderworldContext_ComponentBuild( void* context, void *data ){
-
-}
-
-void _UnderworldContext_ComponentInitialise( void* context, void *data ){
-
-}
-
void _UnderworldContext_ComponentExecute( void* context, void *data ){
}
-void _UnderworldContext_ComponentDestroy( void* context, void *data ){
-
-}
-
Modified: long/3D/Gale/trunk/src/Underworld/Utils/src/Context.h
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Utils/src/Context.h 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/Utils/src/Context.h 2006-06-28 10:06:01 UTC (rev 3900)
@@ -129,15 +129,8 @@
/* Public functions -----------------------------------------------------------------------------------------------*/
void UnderworldContext_AssignPointers( void* context );
-
void _UnderworldContext_ComponentConstruct( void* context, Stg_ComponentFactory *cf );
- void _UnderworldContext_ComponentBuild( void* context, void *data );
-
- void _UnderworldContext_ComponentInitialise( void* context, void *data );
-
void _UnderworldContext_ComponentExecute( void* context, void *data );
- void _UnderworldContext_ComponentDestroy( void* context, void *data );
-
#endif
Modified: long/3D/Gale/trunk/src/Underworld/Utils/src/PressureTemperatureOutput.c
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Utils/src/PressureTemperatureOutput.c 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/Utils/src/PressureTemperatureOutput.c 2006-06-28 10:06:01 UTC (rev 3900)
@@ -223,7 +223,7 @@
void _PressureTemperatureOutput_PrintData( void* swarmOutput, Stream* stream, Particle_Index lParticle_I, void* context ){
PressureTemperatureOutput* self = (PressureTemperatureOutput*)swarmOutput;
Swarm* swarm = self->swarm;
- GlobalParticle* particle = Swarm_ParticleAt( swarm, lParticle_I );
+ GlobalParticle* particle = (GlobalParticle*)Swarm_ParticleAt( swarm, lParticle_I );
double* coord = particle->coord;
double pressure;
double temperature;
Added: long/3D/Gale/trunk/src/Underworld/plugins/Application/Application.c
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/Application/Application.c 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/Application/Application.c 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,183 @@
+/*~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+**
+** Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
+** Melbourne, 3053, Australia.
+**
+** Primary Contributing Organisations:
+** Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
+** Australian Computational Earth Systems Simulator - http://www.access.edu.au
+** Monash Cluster Computing - http://www.mcc.monash.edu.au
+** Computational Infrastructure for Geodynamics - http://www.geodynamics.org
+**
+** Contributors:
+** Patrick D. Sunter, Software Engineer, VPAC. (pds at vpac.org)
+** Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
+** Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
+** David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
+** Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
+** Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
+** Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
+** Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
+** Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
+** Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
+** Kent Humphries, Software Engineer, VPAC. (kenth at vpac.org)
+**
+** This library is free software; you can redistribute it and/or
+** modify it under the terms of the GNU Lesser General Public
+** License as published by the Free Software Foundation; either
+** version 2.1 of the License, or (at your option) any later version.
+**
+** This library is distributed in the hope that it will be useful,
+** but WITHOUT ANY WARRANTY; without even the implied warranty of
+** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+** Lesser General Public License for more details.
+**
+** You should have received a copy of the GNU Lesser General Public
+** License along with this library; if not, write to the Free Software
+** Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+**
+** $Id: StandardConditionFunctions.c 532 2006-04-04 00:21:59Z PatrickSunter $
+**
+**~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~*/
+#ifdef HAVE_PYTHON
+#include <Python.h>
+#endif
+#ifdef HAVE_SDL
+#include <SDL/SDL.h>
+#endif
+
+#include <mpi.h>
+//EP_APPLICATIONS_FINALISE defined in StGermain.h
+#include <StGermain/StGermain.h>
+//Must include StG_FEM library, but WON'T call Stg_FEM_Init in this plugin.
+#include <StG_FEM/StG_FEM.h>
+#include <PICellerator/PICellerator.h>
+#include <Underworld/Underworld.h>
+#include "Application.h"
+
+#include <stdio.h>
+//for strcmp
+#include <string.h>
+
+const Type Underworld_Application_Type = "Underworld_Application";
+
+void _Underworld_Application_Construct( void* component, Stg_ComponentFactory* cf )
+ {
+ AbstractContext* currAbstractContext;
+ UnderworldContext* context = NULL;
+
+ AbstractContext* prevContext;
+ EntryPoint* applicationsFinalise_EP;
+ EntryPoint* applicationsPostConstruct_EP;
+
+ //Get the existing abstract context, as defined by StGermain.
+ //Get it up here, so the communicator can be used for messages.
+ prevContext = (AbstractContext*)Stg_ComponentFactory_ConstructByName( cf, "context", AbstractContext, True );
+
+ //Only need to initialise a new context, and copy all relevant registers over IF this is the first application
+ //plugin to be constructed.
+ //The first application plugin to be constructed is Guaranteed to have the 'largest' context.
+ // (ie is an inherited child of ALL other application plugins about to be loaded)
+ if( prevContext->type == AbstractContext_Type )
+ {
+ //Set the existing abstract context.
+ currAbstractContext = prevContext;
+ //Create a new, empty UnderworldContext.
+ context = UnderworldContext_New( "context", 0, 0, currAbstractContext->communicator, cf->rootDict );
+
+ context->dictionary = cf->rootDict;
+
+ //Initialise Abstract parts of UnderworldContext
+ _AbstractContext_Init((AbstractContext*)context, 0, 0, MPI_COMM_WORLD );
+ //Initialise Discretisation parts of UnderworldContext
+ _DiscretisationContext_Init((DiscretisationContext*)context );
+ //Initialise FiniteElement parts of UnderworldContext
+ _FiniteElementContext_Init( (FiniteElementContext*)context );
+ //Initialise PIcellerator parts of UnderworldContext
+ _PICelleratorContext_Init( (PICelleratorContext*)context );
+ //Initialise Underworld parts of UnderworldContext
+ _UnderworldContext_Init( context );
+
+ //Need to get the old CF from currAbstractContext, and use that in my new context.
+ //Now I CANNOT delete this currAbstractContext or I'll lose the CF. :(
+ context->CF = currAbstractContext->CF;
+
+ //Need to get the LCRegister componentList, and replace the existing (abstract) context
+ //with the newly created (Underworld) context!!!
+ Stg_ObjectList_Replace( context->CF->LCRegister->componentList,
+ ((Stg_Component*) currAbstractContext)->name,
+ KEEP,
+ (Stg_Component*) context);
+
+ //Recreate the registerRegister link in CF.
+ context->CF->registerRegister = context->register_Register;
+
+ //Create the EntryPoint for all application plugins' finalise functions to hook into.
+ applicationsFinalise_EP = EntryPoint_New( EP_APPLICATIONS_FINALISE, EntryPoint_VoidPtr_CastType );
+ EntryPoint_Register_Add(context->entryPoint_Register, (void*)applicationsFinalise_EP);
+
+ //Create the EntryPoint for all application plugins' post components construction functions to hook into.
+ //Currently ONLY Underworld uses this entry point. So it's NOT declared in lower level application plugins
+ // (ie NOT in StG_FEM_Application nor PICellerator_Application)
+ applicationsPostConstruct_EP = EntryPoint_New( EP_APPLICATIONS_POST_COMPONENTS_CONSTRUCT,
+ EntryPoint_VoidPtr_CastType );
+ EntryPoint_Register_Add(context->entryPoint_Register, (void*)applicationsPostConstruct_EP);
+
+
+ } //close of if(context->type == AbstractContext_Type)
+ else //prevContext was NOT an abstract context -> that is does NOT need to be replaced
+ context = (UnderworldContext*) prevContext;
+
+ //Add in the hook for the UnderworldContext_AssignPointers function.
+ EntryPoint_Append( Context_GetEntryPoint( context, EP_APPLICATIONS_POST_COMPONENTS_CONSTRUCT ),
+ "Underworld App Assign Pointers",
+ Underworld_Application_AssignPointers,
+ "Underworld_App_Construct" );
+
+ EntryPoint_Append( Context_GetEntryPoint( context, EP_APPLICATIONS_FINALISE ),
+ "Underworld App Finalise",
+ Underworld_Application_Finalise,
+ "Underworld_App_Construct" );
+}
+
+void Underworld_Application_Finalise()
+{
+ Stream* finaliseStream =
+ Journal_Register(Info_Type, "Underworld_Application");
+ Journal_Printf( finaliseStream,
+ "Finalised: Underworld (Geodynamics Framework).\n");
+
+ Underworld_Finalise();
+}
+
+void Underworld_Application_AssignPointers(void* context)
+{
+ UnderworldContext* self = (UnderworldContext*) context;
+
+ UnderworldContext_AssignPointers( self );
+}
+
+
+void* _Underworld_Application_DefaultNew( Name name ) {
+ return Codelet_New(
+ Underworld_Application_Type,
+ _Underworld_Application_DefaultNew,
+ _Underworld_Application_Construct,
+ _Codelet_Build,
+ _Codelet_Initialise,
+ _Codelet_Execute,
+ _Codelet_Destroy,
+ name );
+}
+
+Index Underworld_Application_Register( PluginsManager* pluginsManager )
+{
+ //Initialise the Underworld context.
+ Underworld_Init( NULL, NULL);
+ #ifdef HAVE_PYTHON
+ Py_Initialize();
+ #endif
+
+ return PluginsManager_Submit( pluginsManager, Underworld_Application_Type, "0", _Underworld_Application_DefaultNew );
+}
+
Added: long/3D/Gale/trunk/src/Underworld/plugins/Application/Application.h
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/Application/Application.h 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/Application/Application.h 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,66 @@
+/*~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+**
+** Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
+** Melbourne, 3053, Australia.
+**
+** Primary Contributing Organisations:
+** Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
+** Australian Computational Earth Systems Simulator - http://www.access.edu.au
+** Monash Cluster Computing - http://www.mcc.monash.edu.au
+** Computational Infrastructure for Geodynamics - http://www.geodynamics.org
+**
+** Contributors:
+** Patrick D. Sunter, Software Engineer, VPAC. (pds at vpac.org)
+** Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
+** Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
+** David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
+** Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
+** Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
+** Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
+** Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
+** Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
+** Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
+**
+** This library is free software; you can redistribute it and/or
+** modify it under the terms of the GNU Lesser General Public
+** License as published by the Free Software Foundation; either
+** version 2.1 of the License, or (at your option) any later version.
+**
+** This library is distributed in the hope that it will be useful,
+** but WITHOUT ANY WARRANTY; without even the implied warranty of
+** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+** Lesser General Public License for more details.
+**
+** You should have received a copy of the GNU Lesser General Public
+** License along with this library; if not, write to the Free Software
+** Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+**
+*/
+/** \file
+** Role:
+** Defines any header info, such as new structures, needed by this plugin
+**
+** Assumptions:
+**
+** Comments:
+**
+** $Id $
+**
+**~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~*/
+
+#ifndef __Underworld_Application_h__
+#define __Underworld_Application_h__
+
+extern const Type Underworld_Application_Type;
+
+typedef struct {
+ __Codelet
+} Underworld_Application;
+
+Index Underworld_Application_Register( PluginsManager* pluginsManager );
+
+void Underworld_Application_Finalise();
+
+void Underworld_Application_AssignPointers(void* context);
+
+#endif
Added: long/3D/Gale/trunk/src/Underworld/plugins/Application/makefile
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/Application/makefile 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/Application/makefile 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,70 @@
+##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+##
+## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
+## Melbourne, 3053, Australia.
+##
+## Primary Contributing Organisations:
+## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
+## Australian Computational Earth Systems Simulator - http://www.access.edu.au
+## Monash Cluster Computing - http://www.mcc.monash.edu.au
+## Computational Infrastructure for Geodynamics - http://www.geodynamics.org
+##
+## Contributors:
+## Patrick D. Sunter, Software Engineer, VPAC. (pds at vpac.org)
+## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
+## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
+## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
+## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
+## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
+## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
+## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
+## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
+## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
+##
+## This library is free software; you can redistribute it and/or
+## modify it under the terms of the GNU Lesser General Public
+## License as published by the Free Software Foundation; either
+## version 2.1 of the License, or (at your option) any later version.
+##
+## This library is distributed in the hope that it will be useful,
+## but WITHOUT ANY WARRANTY; without even the implied warranty of
+## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+## Lesser General Public License for more details.
+##
+## You should have received a copy of the GNU Lesser General Public
+## License along with this library; if not, write to the Free Software
+## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+##
+## $Id: makefile 535 2006-04-11 13:07:34Z PatrickSunter $
+##
+##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+SHELL := $(shell which bash)
+PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
+
+include ${PROJ_ROOT}/Makefile.system
+
+modName := $(shell basename `pwd` )
+modName := $(shell echo ${modName} | cut -c 1 | tr '[:lower:]' '[:upper:]' )$(shell echo ${modName} | cut -c 2- )
+
+mod = ${PROJECT}_${modName}
+includes = ${PROJECT}/${modName}
+
+SRCS = $(wildcard *.c)
+HDRS = $(wildcard *.h)
+
+EXTERNAL_LIBS = -lUnderworld ${EXPORT_DYNAMIC_LFLAGS}
+EXTERNAL_INCLUDES = -DMODULE_EXT=\"${MODULE_EXT}\" -I${PICELLERATOR_INCDIR}
+
+packages = PICELLERATOR STG_FEM STGERMAIN PETSC MPI XML PYTHON MATH DL HYPRE
+
+ifdef HAVE_SDL
+ packages += SDL
+
+ ifeq (Darwin, $(SYSTEM))
+ SRCS += SDLMain.m
+ endif
+endif
+
+
+include ${PROJ_ROOT}/Makefile.vmake
Modified: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/MovingMesh.c
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/MovingMesh.c 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/MovingMesh.c 2006-06-28 10:06:01 UTC (rev 3900)
@@ -53,234 +53,456 @@
/* Each component type needs a unique identifier (as a string for us to read and as an integer for realtime comparisions) */
-const Type Underworld_MovingMesh_Type = "Underworld_MovingMesh_Type";
+const Type Underworld_MovingMesh_Type = "Underworld_MovingMesh";
-
-void _Underworld_MovingMesh_Construct( void* component, Stg_ComponentFactory* cf ) {
+void _Underworld_MovingMesh_Construct( void* meshExtender, Stg_ComponentFactory* cf ) {
UnderworldContext* context = Stg_ComponentFactory_ConstructByName( cf, "context", UnderworldContext, True );
- TimeIntegratee* meshExtender;
- FeVariable* velocityField = context->velocityField;
- Variable* meshCoordVariable = NULL;
+ MeshExtender* self = (MeshExtender*) meshExtender;
+ Dimension_Index dim_I = 0;
+ Dimension_Index axisToRemeshOnTotal = 0;
Journal_Firewall(
(Bool)context,
Journal_Register( Error_Type, Underworld_MovingMesh_Type ),
"No context found\n" );
- velocityField = context->velocityField;
+ self->velocityField = context->velocityField;
+
Journal_Firewall(
- (Bool)velocityField,
+ (Bool)self->velocityField,
Journal_Register( Error_Type, Underworld_MovingMesh_Type ),
- "The required velocity feild component has not been created or placed on the context.\n");
+ "The required velocity field component has not been created or placed on the context.\n");
Journal_Firewall(
- True == Stg_Class_IsInstance( velocityField->feMesh->layout->decomp, HexaMD_Type ),
+ True == Stg_Class_IsInstance( self->velocityField->feMesh->layout->decomp, HexaMD_Type ),
Journal_Register( Error_Type, Underworld_MovingMesh_Type ),
"Error: in %s: provided Velocity field's mesh doesn't have a regular decomposition.\n",
__func__ );
+ self->context = (AbstractContext*)context;
+
+ self->remeshAccordingToAxis[I_AXIS] =
+ Dictionary_GetBool_WithDefault( context->dictionary, "remeshAccordingToIAxis", True );
+ self->remeshAccordingToAxis[J_AXIS] =
+ Dictionary_GetBool_WithDefault( context->dictionary, "remeshAccordingToJAxis", True );
+ if ( self->velocityField->dim == 2 ) {
+ self->remeshAccordingToAxis[K_AXIS] = False;
+ }
+ else {
+ self->remeshAccordingToAxis[K_AXIS] =
+ Dictionary_GetBool_WithDefault( context->dictionary, "remeshAccordingToKAxis", True );
+ }
+
+ axisToRemeshOnTotal = 0;
+ for ( dim_I = 0; dim_I < self->velocityField->dim; dim_I++ ) {
+ if ( self->remeshAccordingToAxis[dim_I] == True ) {
+ axisToRemeshOnTotal++;
+ }
+ }
+
Journal_Firewall(
- (Bool)context->timeIntegrator,
- Journal_Register( Error_Type, CURR_MODULE_NAME ),
- "Need time integrator to use '%s'.\n", CURR_MODULE_NAME );
+ axisToRemeshOnTotal > 0,
+ Journal_Register( Error_Type, Underworld_MovingMesh_Type ),
+ "Error: in %s: you have disabled remeshing on all axis. Please set at least one axis to remesh on "
+ "using the remeshAccordingToIAxis, remeshAccordingToJAxis, remeshAccordingToKAxis dictionary "
+ "parameters, if you wish to use the remesher.\n",
+ __func__ );
- meshCoordVariable = FiniteElement_Mesh_RegisterNodeCoordsAsVariables(
- velocityField->feMesh, context->variable_Register, NULL );
-
- /* Create Mesh Extender */
- meshExtender = TimeIntegratee_New(
- "meshExtender",
- context->timeIntegrator,
- meshCoordVariable,
- 1,
- (Stg_Component**) &velocityField );
-
- /* Setup function pointers on mesh extender */
- meshExtender->_calculateTimeDeriv = Underworld_MovingMesh_TimeDerivative;
+ /* */
+ // TODO: this timeIntegrator interface seems weird. Would have thought you'd pass a ptr to self.
TimeIntegrator_PrependFinishEP(
context->timeIntegrator, "Underworld_MovingMesh_Remesh", Underworld_MovingMesh_Remesh,
- CURR_MODULE_NAME, velocityField );
+ CURR_MODULE_NAME, self );
/* Add to Live Stg_Component Register so it gets automatically built, initialised and deleted */
- LiveComponentRegister_Add( context->CF->LCRegister, (Stg_Component*) meshExtender );
+ LiveComponentRegister_Add( context->CF->LCRegister, (Stg_Component*) self );
}
-void Underworld_MovingMesh_TimeDerivative( void* _meshExtender, Index array_I, double* timeDeriv ) {
- TimeIntegratee* meshExtender = (TimeIntegratee*) _meshExtender;
- FeVariable* velocityField = (FeVariable*) meshExtender->data[0];
- /* Time derivative for velocity nodes is calculated from value stored for that node */
- /* This function assumes that the array index is the node index */
- FeVariable_GetValueAtNode( velocityField, array_I, timeDeriv );
-}
+void Underworld_MovingMesh_Remesh( TimeIntegrator* timeIntegrator, MeshExtender* self ) {
+ FeVariable* velocityField = self->velocityField;
+ Mesh* mesh = (Mesh*) velocityField->feMesh;
+ HexaMD* meshDecomp = (HexaMD*)mesh->layout->decomp;
+ Stream* debug = Journal_Register( Debug_Type, Underworld_MovingMesh_Type );
+ Stream* info = Journal_Register( Info_Type, self->type );
+ double remeshTime, remeshTimeStart, remeshTimeEnd;
+ Dimension_Index dim_I = 0;
+ Dimension_Index axisToRemeshOnTotal = 0;
+ double dt = 0.0;
+ #if DEBUG
+ Index element_dI;
+ #endif
-void Underworld_MovingMesh_Remesh( TimeIntegratee* meshExtender, FeVariable* velocityField ) {
- Mesh_RemeshAccordingToSidewalls( velocityField->feMesh, velocityField->dim );
+ Journal_Printf( info, "%d: starting remeshing of mesh \"%s\":\n", meshDecomp->rank, mesh->name );
+ axisToRemeshOnTotal = 0;
+ Journal_Printf( info, "Axis set to remesh on are : " );
+ for ( dim_I = 0; dim_I < velocityField->dim; dim_I++ ) {
+ if ( self->remeshAccordingToAxis[dim_I] == True ) {
+ Journal_Printf( info, "%c, ", IJKTopology_DimNumToDimLetter[dim_I] );
+ axisToRemeshOnTotal++;
+ }
+ }
+ Journal_Printf( info, "\n" );
+ Journal_DPrintf( debug, "In %s(): about to remesh:\n", __func__ );
+ Stream_Indent( debug );
+
+ Journal_Firewall(
+ axisToRemeshOnTotal > 0,
+ Journal_Register( Error_Type, Underworld_MovingMesh_Type ),
+ "Error: in %s: you have disabled remeshing on all axis. Please set at least one axis to remesh on "
+ "using the remeshAccordingToIAxis, remeshAccordingToJAxis, remeshAccordingToKAxis dictionary "
+ "parameters, if you wish to use the remesher.\n",
+ __func__ );
+
+ dt = AbstractContext_Dt( self->context );
+ /* TODO: the if statement is here since we seem to be using last timestep's dt to update. Is this correct?
+ PatrickSunter - 5 June 2006 */
+ if ( self->context->timeStep > 1 ) {
+ Journal_Firewall(
+ dt > 0.0,
+ Journal_Register( Error_Type, Underworld_MovingMesh_Type ),
+ "Error- in %s: in timeStep %u, provided Context \"%s\"'s dt <= 0.\n",
+ __func__, self->context->timeStep, self->context->name );
+ }
+
+ remeshTimeStart = MPI_Wtime();
+
+ Journal_Firewall(
+ True == Stg_Class_IsInstance( velocityField->feMesh->layout->decomp, HexaMD_Type ),
+ Journal_Register( Error_Type, Underworld_MovingMesh_Type ),
+ "Error: in %s: provided Velocity field's mesh doesn't have a regular decomposition.\n",
+ __func__ );
+
+ Journal_Firewall(
+ True == Stg_Class_IsInstance( velocityField->feMesh->layout->elementLayout, ParallelPipedHexaEL_Type ),
+ Journal_Register( Error_Type, Underworld_MovingMesh_Type ),
+ "Error: in %s: provided Velocity field's mesh doesn't have a %s elementLayout.\n",
+ __func__, ParallelPipedHexaEL_Type );
+
+ Underworld_MovingMesh_RemeshAccordingToSidewalls( self, velocityField );
+
+ Journal_DPrintf( debug, "remeshing complete.\n" );
+
+ #if DEBUG
+ if ( Stream_IsEnable( debug ) && Stream_IsPrintableLevel( debug, 3 ) ) {
+ Journal_DPrintfL( debug, 3, "Updated node coords:\n" );
+ Stream_Indent( debug );
+ for ( element_dI = 0; element_dI < velocityField->feMesh->elementDomainCount; element_dI++ ) {
+ Journal_DPrintfL( debug, 3, "In Element %3d: ", element_dI );
+ Mesh_PrintNodeCoordsOfElement( velocityField->feMesh, element_dI, debug );
+ }
+ Stream_UnIndent( debug );
+ }
+ #endif
+
+ remeshTimeEnd = MPI_Wtime();
+ remeshTime = remeshTimeEnd - remeshTimeStart;
+ Journal_Printf( info, "%d: finished remeshing: took %f sec.\n", meshDecomp->rank, remeshTime );
+
+ Stream_UnIndent( debug );
+
+ return;
}
-void Mesh_RemeshAccordingToSidewalls( void* mesh, Dimension_Index dim ) {
- Mesh* self = (Mesh*) mesh;
- Dimension_Index dim_I;
- for ( dim_I = 0 ; dim_I < dim ; dim_I++ )
- Mesh_RemeshAccordingToSidewall_SingleAxis( self, dim_I );
+void Underworld_MovingMesh_RemeshAccordingToSidewalls( MeshExtender* self, FeVariable* velocityField ) {
+ Mesh* mesh = (Mesh*) velocityField->feMesh;
+ Dimension_Index remeshAxis_I;
+
+ for ( remeshAxis_I = 0 ; remeshAxis_I < velocityField->dim ; remeshAxis_I++ ) {
+ if ( self->remeshAccordingToAxis[remeshAxis_I] == True ) {
+ Underworld_MovingMesh_RemeshAccordingToSidewall_SingleAxis( self, velocityField, remeshAxis_I );
+ }
+ }
/* Update Element Layouts */
- _ParallelPipedHexaEL_Build( self->layout->elementLayout, self->layout->decomp );
+ _ParallelPipedHexaEL_Build( mesh->layout->elementLayout, mesh->layout->decomp );
}
-void Mesh_RemeshAccordingToSidewall_SingleAxis( void* mesh, Dimension_Index planeAxis ) {
- Mesh* self = (Mesh*) mesh;
+
+void Underworld_MovingMesh_RemeshAccordingToSidewall_SingleAxis(
+ MeshExtender* self,
+ FeVariable* velocityField,
+ Dimension_Index remeshAxis )
+{
+ Mesh* mesh = (Mesh*) velocityField->feMesh;
+ HexaMD* meshDecomp = (HexaMD*)mesh->layout->decomp;
/* Assume IJK Topology */
- IJKTopology* topology = (IJKTopology*) self->layout->nodeLayout->topology;
- HexaMD* meshDecomp = (HexaMD*)self->layout->decomp;
- BlockGeometry* geometry = (BlockGeometry*) self->layout->elementLayout->geometry;
- double* min;
- double* max;
+ IJKTopology* topology = (IJKTopology*) mesh->layout->nodeLayout->topology;
+ BlockGeometry* geometry = (BlockGeometry*) mesh->layout->elementLayout->geometry;
double* minGlobal;
double* maxGlobal;
- Node_Index sideNodeCount;
- Dimension_Index aAxis = ( planeAxis == I_AXIS ? J_AXIS : I_AXIS );
- Dimension_Index bAxis = ( planeAxis == K_AXIS ? J_AXIS : K_AXIS );
- IJK minNodeIJK;
- IJK maxNodeIJK;
+ Node_Index sideWallNodeCount;
+ Dimension_Index otherAxisA = (remeshAxis + 1) % 3;
+ Dimension_Index otherAxisB = (remeshAxis + 2) % 3;
IJK nodeIJK;
- Index array_I;
+ Node_Index sideWallNode_I;
Node_Index aNode_I;
Node_Index bNode_I;
- Node_Index planeNode_I;
- Node_LocalIndex minNodeLocal_I;
- Node_LocalIndex maxNodeLocal_I;
+ Node_Index remeshAxisNode_I;
Node_GlobalIndex nodeGlobal_I;
Node_DomainIndex nodeDomain_I;
- double dx;
+ double newElementWidthInRemeshAxis;
double minGlobalCoord = HUGE_VAL;
double maxGlobalCoord = -HUGE_VAL;
- double remeshTime, remeshTimeStart, remeshTimeEnd;
Bool nodeG2DBuiltTemporarily = False;
+ double newCoordInRemeshAxis = 0;
+ double tolerance = (geometry->max[remeshAxis] - geometry->min[remeshAxis]) * 1e-9;
- Journal_Firewall(
- True == Stg_Class_IsInstance( self->layout->decomp, HexaMD_Type ),
- Journal_Register( Error_Type, Underworld_MovingMesh_Type ),
- "Error: in %s: provided Velocity field's mesh doesn't have a regular decomposition.\n",
- __func__ );
+ Stream* debug = Journal_Register( Debug_Type, Underworld_MovingMesh_Type );
- sideNodeCount = topology->size[ aAxis ] * topology->size[ bAxis ];
+ Journal_DPrintf( debug, "In %s(): for remeshAxis %c\n", __func__, IJKTopology_DimNumToDimLetter[remeshAxis] );
+ Stream_Indent( debug );
- min = Memory_Alloc_Array( double, sideNodeCount, "min node coords" );
- max = Memory_Alloc_Array( double, sideNodeCount, "max node coords" );
- minGlobal = Memory_Alloc_Array( double, sideNodeCount, "min node coords" );
- maxGlobal = Memory_Alloc_Array( double, sideNodeCount, "max node coords" );
+ sideWallNodeCount = topology->size[ otherAxisA ] * topology->size[ otherAxisB ];
+ minGlobal = Memory_Alloc_Array( double, sideWallNodeCount, "min node coords" );
+ maxGlobal = Memory_Alloc_Array( double, sideWallNodeCount, "max node coords" );
- printf( "%d: starting remesh:\n", meshDecomp->rank );
- remeshTimeStart = MPI_Wtime();
-
/* As long as memory not too tight, create temporary tables to massively speed up
necessary global to local calculations. */
- if ( (self->buildTemporaryGlobalTables == True) && (self->nodeG2D == 0) ) {
- self->nodeG2D = MeshDecomp_BuildNodeGlobalToDomainMap( meshDecomp );
+ if ( (mesh->buildTemporaryGlobalTables == True) && (mesh->nodeG2D == 0) ) {
+ mesh->nodeG2D = MeshDecomp_BuildNodeGlobalToDomainMap( meshDecomp );
nodeG2DBuiltTemporarily = True;
}
- /* Loop over all nodes on the minimum side wall and the maximum side wall */
- minNodeIJK[ planeAxis ] = 0;
- maxNodeIJK[ planeAxis ] = topology->size[ planeAxis ] - 1 ;
- array_I = 0;
- for ( aNode_I = 0 ; aNode_I < topology->size[ aAxis ] ; aNode_I++ ) {
- minNodeIJK[ aAxis ] = maxNodeIJK[ aAxis ] = aNode_I;
- for ( bNode_I = 0 ; bNode_I < topology->size[ bAxis ] ; bNode_I++ ) {
- minNodeIJK[ bAxis ] = maxNodeIJK[ bAxis ] = bNode_I;
+ /* calc min and max wall new coords given velocity field */
+ Underworld_MovingMesh_CalculateMinOrMaxCoordsOnSidewall(
+ self, velocityField, remeshAxis, MIN_COORDS, minGlobal );
+ Underworld_MovingMesh_CalculateMinOrMaxCoordsOnSidewall(
+ self, velocityField, remeshAxis, MAX_COORDS, maxGlobal );
- /* Get Global Node Indicies for the node at these walls */
+ /* calc overall min and max wall new coords */
+ for ( sideWallNode_I = 0; sideWallNode_I < sideWallNodeCount; sideWallNode_I++ ) {
+ if ( minGlobal[ sideWallNode_I ] < minGlobalCoord )
+ minGlobalCoord = minGlobal[ sideWallNode_I ];
+ if ( maxGlobal[ sideWallNode_I ] > maxGlobalCoord )
+ maxGlobalCoord = maxGlobal[ sideWallNode_I ];
+ }
- /* Convert to Local Index */
- minNodeLocal_I = RegularMeshUtils_Node_Global3DToLocal1D(
- meshDecomp, minNodeIJK[0], minNodeIJK[1], minNodeIJK[2] );
- maxNodeLocal_I = RegularMeshUtils_Node_Global3DToLocal1D(
- meshDecomp, maxNodeIJK[0], maxNodeIJK[1], maxNodeIJK[2] );
-
- /* Check to see whether this min node is on this processor */
- if ( minNodeLocal_I < self->nodeLocalCount )
- min[ array_I ] = Mesh_CoordAt( self, minNodeLocal_I )[ planeAxis ];
- else
- min[ array_I ] = HUGE_VAL;
-
- /* Check to see whether this max node is on this processor */
- if ( maxNodeLocal_I < self->nodeLocalCount )
- max[ array_I ] = Mesh_CoordAt( self, maxNodeLocal_I )[ planeAxis ];
- else
- max[ array_I ] = -HUGE_VAL;
-
- /* Increment counter for side wall node index */
- array_I++;
+ if ( ( fabs( minGlobalCoord - geometry->min[ remeshAxis ] ) < tolerance ) &&
+ ( fabs( maxGlobalCoord - geometry->max[ remeshAxis ] ) < tolerance ) )
+ {
+ Journal_DPrintfL( debug, 1, "Found no extension/compression in remeshAxis %c: thus not "
+ "updating node coords.\n", IJKTopology_DimNumToDimLetter[remeshAxis] );
+ Memory_Free( minGlobal );
+ Memory_Free( maxGlobal );
+ if ( nodeG2DBuiltTemporarily ) {
+ Memory_Free( mesh->nodeG2D );
+ mesh->nodeG2D = NULL;
}
+ Stream_UnIndent( debug );
+ return;
}
- MPI_Allreduce( min, minGlobal, sideNodeCount, MPI_DOUBLE, MPI_MIN, meshDecomp->communicator );
- MPI_Allreduce( max, maxGlobal, sideNodeCount, MPI_DOUBLE, MPI_MAX, meshDecomp->communicator );
+ /* Change Geometry */
+ Journal_DPrintfL( debug, 3, "Updating mesh's BlockGeometry \"%s\" with new global "
+ "min and max in remesh axis %c: min=%.3f, max=%.3f\n",
+ geometry->name, IJKTopology_DimNumToDimLetter[remeshAxis], minGlobalCoord, maxGlobalCoord );
- /* Loop over all nodes updating coordinates */
- array_I = 0;
- for ( aNode_I = 0 ; aNode_I < topology->size[ aAxis ] ; aNode_I++ ) {
- nodeIJK[ aAxis ] = aNode_I;
- for ( bNode_I = 0 ; bNode_I < topology->size[ bAxis ] ; bNode_I++ ) {
- nodeIJK[ bAxis ] = bNode_I;
- dx = (maxGlobal[ array_I ] - minGlobal[ array_I ]) / ( (double)topology->size[ planeAxis ] - 1.0 );
+ geometry->min[ remeshAxis ] = minGlobalCoord;
+ geometry->max[ remeshAxis ] = maxGlobalCoord;
- for ( planeNode_I = 0 ; planeNode_I < topology->size[ planeAxis ] ; planeNode_I++ ) {
- nodeIJK[ planeAxis ] = planeNode_I;
+ Journal_DPrintfL( debug, 2, "Looping over all nodes, updating coordinates in remeshAxis %c based on "
+ "stretch/compression on the relevant side walls.\n", IJKTopology_DimNumToDimLetter[remeshAxis] );
+ Stream_Indent( debug );
+ sideWallNode_I = 0;
+ for ( aNode_I = 0 ; aNode_I < topology->size[ otherAxisA ] ; aNode_I++ ) {
+ nodeIJK[ otherAxisA ] = aNode_I;
+ for ( bNode_I = 0 ; bNode_I < topology->size[ otherAxisB ] ; bNode_I++ ) {
+ nodeIJK[ otherAxisB ] = bNode_I;
+ newElementWidthInRemeshAxis = (maxGlobal[ sideWallNode_I ] - minGlobal[ sideWallNode_I ])
+ / ( (double)topology->size[ remeshAxis ] - 1.0 );
+
+ Journal_DPrintfL( debug, 3, "For slice with aNode_I=%u in otherAxisA=%c and bNode_I=%u in "
+ "otherAxisB=%c: calculated new element width in remesh axis= %.3f\n",
+ aNode_I, IJKTopology_DimNumToDimLetter[otherAxisA],
+ bNode_I, IJKTopology_DimNumToDimLetter[otherAxisB],
+ newElementWidthInRemeshAxis );
+ Stream_Indent( debug );
+
+ for ( remeshAxisNode_I = 0 ; remeshAxisNode_I < topology->size[ remeshAxis ] ; remeshAxisNode_I++ ) {
+ nodeIJK[ remeshAxis ] = remeshAxisNode_I;
+
/* Find this local coord */
IJK_3DTo1D( topology, nodeIJK, &nodeGlobal_I );
- nodeDomain_I = Mesh_NodeMapGlobalToDomain( self, nodeGlobal_I );
+ nodeDomain_I = Mesh_NodeMapGlobalToDomain( mesh, nodeGlobal_I );
/* Adjust position if this node is on my processor */
- if ( nodeDomain_I < self->nodeDomainCount )
- Mesh_CoordAt( self, nodeDomain_I )[ planeAxis ] = minGlobal[ array_I ] + dx * (double) planeNode_I;
+ if ( nodeDomain_I < mesh->nodeDomainCount ) {
+ newCoordInRemeshAxis = minGlobal[ sideWallNode_I ] +
+ newElementWidthInRemeshAxis * (double) remeshAxisNode_I;
+ Journal_DPrintfL( debug, 3, "updating node coord[%u] at IJK(%u,%u,%u) (domain "
+ "node I %u) from %.3f to %.3f\n", remeshAxis, nodeIJK[0], nodeIJK[1], nodeIJK[2],
+ nodeDomain_I, Mesh_CoordAt( mesh, nodeDomain_I )[ remeshAxis ],
+ newCoordInRemeshAxis );
+ Mesh_CoordAt( mesh, nodeDomain_I )[ remeshAxis ] = newCoordInRemeshAxis;
+ }
}
+ Stream_UnIndent( debug );
- if ( minGlobal[ array_I ] < minGlobalCoord )
- minGlobalCoord = minGlobal[ array_I ];
- if ( maxGlobal[ array_I ] > maxGlobalCoord )
- maxGlobalCoord = maxGlobal[ array_I ];
-
/* Increment counter for side wall node index */
- array_I++;
+ sideWallNode_I++;
}
}
+ Stream_UnIndent( debug );
- remeshTimeEnd = MPI_Wtime();
- remeshTime = remeshTimeEnd - remeshTimeStart;
- printf("%d: finished remesh: took %f sec.\n", meshDecomp->rank, remeshTime );
-
- /* Change Geometry */
- geometry->min[ planeAxis ] = minGlobalCoord;
- geometry->max[ planeAxis ] = maxGlobalCoord;
-
if ( nodeG2DBuiltTemporarily ) {
- Memory_Free( self->nodeG2D );
- self->nodeG2D = NULL;
+ Memory_Free( mesh->nodeG2D );
+ mesh->nodeG2D = NULL;
}
- Memory_Free( min );
- Memory_Free( max );
+ /* Update the element layout's partition info based on geometry changes... */
+ ParallelPipedHexaEL_UpdateGeometryPartitionInfo( mesh->layout->elementLayout, mesh->layout->decomp );
+
Memory_Free( minGlobal );
Memory_Free( maxGlobal );
+ Stream_UnIndent( debug );
}
-
+void Underworld_MovingMesh_CalculateMinOrMaxCoordsOnSidewall(
+ MeshExtender* self,
+ FeVariable* velocityField,
+ Dimension_Index remeshAxis,
+ MinOrMaxFlag minOrMaxFlag,
+ double* newWallCoordsInRemeshAxisGlobal )
+{
+ Mesh* mesh = (Mesh*) velocityField->feMesh;
+ HexaMD* meshDecomp = (HexaMD*)mesh->layout->decomp;
+ IJKTopology* topology = (IJKTopology*) mesh->layout->nodeLayout->topology;
+ BlockGeometry* geometry = (BlockGeometry*) mesh->layout->elementLayout->geometry;
+ IJK wallNodeIJK;
+ Node_Index sideWallNode_I;
+ Node_LocalIndex wallNode_lI;
+ Node_Index aNode_I;
+ Node_Index bNode_I;
+ Node_Index sideWallNodeCount;
+ Dimension_Index otherAxisA = (remeshAxis + 1) % 3;
+ Dimension_Index otherAxisB = (remeshAxis + 2) % 3;
+ MPI_Op mpiOperation;
+ double* newWallCoordsInRemeshAxis = NULL;
+ Node_LocalIndex lastCalculatedWallNode_lI = 0;
+ Node_Index lastCalculatedWallNode_sideI = 0;
+ double lastCalculatedNewWallCoordInRemeshAxis;
+ double* currNodeCoord;
+ double velVector[3];
+ /* Somewhat arbitrary tolerance to check that extension of the mesh is not irregular in the current axis */
+ double tolerance = (geometry->max[remeshAxis] - geometry->min[remeshAxis]) * 1e-9;
+ double differenceBetweenCurrAndPrev = 0;
+ double dt = AbstractContext_Dt( self->context );
+ Bool atLeastOneLocalSideNodeProcessed = False;
+ sideWallNodeCount = topology->size[ otherAxisA ] * topology->size[ otherAxisB ];
+ newWallCoordsInRemeshAxis = Memory_Alloc_Array( double, sideWallNodeCount, "newWallCoordsInRemeshAxis" );
+
+ if ( minOrMaxFlag == MIN_COORDS ) {
+ /* Loop over all nodes on the minimum side wall */
+ wallNodeIJK[ remeshAxis ] = 0;
+ }
+ else {
+ /* Loop over all nodes on the maximum side wall */
+ wallNodeIJK[ remeshAxis ] = topology->size[ remeshAxis ] - 1 ;
+ }
+
+ sideWallNode_I = 0;
+ for ( aNode_I = 0 ; aNode_I < topology->size[ otherAxisA ] ; aNode_I++ ) {
+ wallNodeIJK[ otherAxisA ] = aNode_I;
+ for ( bNode_I = 0 ; bNode_I < topology->size[ otherAxisB ] ; bNode_I++ ) {
+ wallNodeIJK[ otherAxisB ] = bNode_I;
+
+ /* Convert to Local Index */
+ wallNode_lI = RegularMeshUtils_Node_Global3DToLocal1D(
+ meshDecomp, wallNodeIJK[0], wallNodeIJK[1], wallNodeIJK[2] );
+
+ /* Check to see whether this wall node is on this processor */
+ if ( wallNode_lI < mesh->nodeLocalCount ) {
+ /* Record the current coord at this node */
+ currNodeCoord = Mesh_CoordAt( mesh, wallNode_lI );
+ newWallCoordsInRemeshAxis[sideWallNode_I] = currNodeCoord[remeshAxis];
+ /* Now add the velocity BC / solved velocity on this wall to see where it will move to */
+ FeVariable_GetValueAtNode( velocityField, wallNode_lI, velVector );
+ newWallCoordsInRemeshAxis[sideWallNode_I] += velVector[remeshAxis] * dt;
+ /* make sure that all the side wall stretches are the same if this is for a
+ * parallelPipedHexa mesh */
+ if ( ( True == atLeastOneLocalSideNodeProcessed ) &&
+ Stg_Class_IsInstance( mesh->layout->elementLayout, ParallelPipedHexaEL_Type ) )
+ {
+ Stream* errorStream = Journal_Register( Error_Type, self->type );
+ differenceBetweenCurrAndPrev = fabs( newWallCoordsInRemeshAxis[ sideWallNode_I ]
+ - lastCalculatedNewWallCoordInRemeshAxis );
+
+ Journal_Firewall( differenceBetweenCurrAndPrev < tolerance,
+ errorStream,
+ "Error - in %s(): While calculating new coords to remesh to in axis %c for mesh "
+ "\"%s\" with element layout type %s, found side wall node %u (with IJK={%u,%u,%u}, "
+ "local index %u and coord={%.2f,%.2f,%.2f}) has "
+ "new coord in remeshAxis of %.2f (= coord %.2f + new vel %.2f in remesh "
+ "axis * dt=%.2f), but "
+ "already calculated side wall node %u (local index %u) has new wall coord in remesh "
+ "axis of %.2f. "
+ "This would cause irregular deformation, which is not supported for this "
+ "mesh type. Check your Boundary Condition specifications.\n",
+ __func__, IJKTopology_DimNumToDimLetter[remeshAxis], mesh->name,
+ ParallelPipedHexaEL_Type,
+ sideWallNode_I, wallNodeIJK[0], wallNodeIJK[1], wallNodeIJK[2],
+ wallNode_lI,
+ currNodeCoord[0], currNodeCoord[1], currNodeCoord[2],
+ newWallCoordsInRemeshAxis[sideWallNode_I], currNodeCoord[remeshAxis],
+ velVector[remeshAxis], dt,
+ lastCalculatedWallNode_sideI, lastCalculatedWallNode_lI,
+ lastCalculatedNewWallCoordInRemeshAxis );
+ }
+ /* Copy values for comparison */
+ lastCalculatedWallNode_sideI = sideWallNode_I;
+ lastCalculatedWallNode_lI = wallNode_lI;
+ lastCalculatedNewWallCoordInRemeshAxis = newWallCoordsInRemeshAxis[sideWallNode_I];
+ atLeastOneLocalSideNodeProcessed = True;
+ }
+ else {
+ if ( minOrMaxFlag == MIN_COORDS ) {
+ newWallCoordsInRemeshAxis[sideWallNode_I] = HUGE_VAL;
+ }
+ else {
+ newWallCoordsInRemeshAxis[ sideWallNode_I ] = -HUGE_VAL;
+ }
+ }
+
+ /* Increment counter for side wall node index */
+ sideWallNode_I++;
+ }
+ }
+
+ if ( minOrMaxFlag == MIN_COORDS ) {
+ mpiOperation = MPI_MIN;
+ }
+ else {
+ mpiOperation = MPI_MAX;
+ }
+
+ MPI_Allreduce( newWallCoordsInRemeshAxis, newWallCoordsInRemeshAxisGlobal, sideWallNodeCount,
+ MPI_DOUBLE, mpiOperation, meshDecomp->communicator );
+
+ // TODO : should really do another iteration over all the nodes, checking identical
+
+ Memory_Free( newWallCoordsInRemeshAxis );
+}
+
+
/* This function will provide StGermain the abilty to instantiate (create) this codelet on demand. */
void* _Underworld_MovingMesh_DefaultNew( Name name ) {
- return Codelet_New(
+ return _Codelet_New(
+ sizeof( MeshExtender ),
Underworld_MovingMesh_Type,
+ _Codelet_Delete,
+ _Codelet_Print,
+ _Codelet_Copy,
_Underworld_MovingMesh_DefaultNew,
_Underworld_MovingMesh_Construct, /* SQ NOTE: Used to be a construct extensions. */
_Codelet_Build,
_Codelet_Initialise,
_Codelet_Execute,
_Codelet_Destroy,
- name );
+ name );
}
/* This function is automatically run by StGermain when this plugin is loaded. The name must be "<plugin-name>_Register". */
Modified: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/MovingMesh.h
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/MovingMesh.h 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/MovingMesh.h 2006-06-28 10:06:01 UTC (rev 3900)
@@ -40,19 +40,46 @@
*+
** $Id$
**
+** Comments:
+** Not really sure why this is a TimeIntegrator of all node coords based on the velocity field,
+** since as Vincent & I discussed it really should be based only on the BCs. Would like to
+** refactor at some stage. Perhaps its due to the coupling with particle advection.
+** -- Main. PatrickSunter
+**
**~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~*/
#ifndef __Underworld_MovingMesh_h__
#define __Underworld_MovingMesh_h__
+ typedef enum MinOrMaxFlag { MIN_COORDS, MAX_COORDS } MinOrMaxFlag;
+
+ /** The MeshExtender extends upon the Codelet class */
+ #define __MeshExtender \
+ __Codelet \
+ \
+ FeVariable* velocityField; \
+ AbstractContext* context; /** Needed to get dt and calculate updated width of box */\
+ Bool remeshAccordingToAxis[3];
+
+ typedef struct MeshExtender { __MeshExtender } MeshExtender;
+
Index Underworld_MovingMesh_Register( PluginsManager* pluginsManager );
void* _Underworld_MovingMesh_DefaultNew( Name name );
void Underworld_MovingMesh_Construct( void* component, Stg_ComponentFactory* _cf ) ;
- void Underworld_MovingMesh_TimeDerivative( void* _meshExtender, Index array_I, double* timeDeriv ) ;
- void Underworld_MovingMesh_Remesh( TimeIntegratee* meshExtender, FeVariable* velocityField ) ;
- void Mesh_RemeshAccordingToSidewalls( void* mesh, Dimension_Index dim ) ;
- void Mesh_RemeshAccordingToSidewall_SingleAxis( void* mesh, Dimension_Index planeAxis ) ;
+ void Underworld_MovingMesh_Remesh( TimeIntegrator* timeIntegrator, MeshExtender* self ) ;
+ void Underworld_MovingMesh_RemeshAccordingToSidewalls( MeshExtender* self, FeVariable* velocityField ) ;
+ void Underworld_MovingMesh_RemeshAccordingToSidewall_SingleAxis(
+ MeshExtender* self,
+ FeVariable* velocityField,
+ Dimension_Index remeshAxis ) ;
+
+ void Underworld_MovingMesh_CalculateMinOrMaxCoordsOnSidewall(
+ MeshExtender* self,
+ FeVariable* velocityField,
+ Dimension_Index remeshAxis,
+ MinOrMaxFlag minOrMaxFlag,
+ double* newWallCoordsInRemeshAxisGlobal );
#endif
Modified: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/Viewport.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/Viewport.xml 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/Viewport.xml 2006-06-28 10:06:01 UTC (rev 3900)
@@ -3,52 +3,52 @@
<StGermainData xmlns="http://www.vpac.org/StGermain/XML_IO_Handler/Jun2003">
-<list name="ColourMaps" mergeType="merge">
- <struct>
- <param name="Name">CIItcomMovingMeshCMap</param>
- <param name="ColourMap">Blue white Red</param>
- <param name="Minimum">-1.0</param>
- <param name="Maximum">1.0</param>
- <param name="DynamicRange">true</param>
- </struct>
-</list>
+ <include>window.xml</include>
-<list name="Viewports" mergeType="merge">
- <struct>
- <param name="Name">MovingMeshTest</param>
- <param name="CameraRadius">2.000000</param>
- <param name="UpDirectionX">0.0</param>
- <param name="UpDirectionY">0.0</param>
- <param name="UpDirectionZ">1.0</param>
- <param name="CameraTheta">-27.000000</param>
- <param name="CameraPhi">55.000000</param>
- <param name="FocalPointX">0.500000</param>
- <param name="FocalPointY">0.500000</param>
- <param name="FocalPointZ">0.500000</param>
- <list name="Objects">
- <struct>
- <param name="MeshLayout">mesh-linear</param>
- <param name="PlotAs">Mesh</param>
- <param name="Colour">Black</param>
- </struct>
- <!--
- <struct>
- <param name="PlotAs">Particles</param>
- <param name="PositionVariable">materialPoints-Position</param>
- <param name="PointSize">3.0</param>
- <param name="ColourMap">Red</param>
- </struct>
- -->
- <struct>
- <param name="FieldVariable">VelocityField</param>
- <param name="PlotAs">DomainBoundary</param>
- <!--
- <param name="LineWidth"> 1.0 </param>
- -->
- <param name="Colour"> White </param>
- </struct>
- </list>
+ <struct name="components" mergeType="merge">
+ <!-- Cameras and colour maps -->
+ <struct name="camera">
+ <param name="Type">lucCamera</param>
+ <param name="CentreFieldVariable">VelocityField</param>
+ <param name="coordZ">1.4762</param>
+ </struct>
+ <!-- Viewport objects -->
+ <struct name="particleDots">
+ <param name="Type">lucSwarmViewer</param>
+ <param name="Swarm">materialSwarm</param>
+ <param name="colour">red</param>
+ <param name="pointSize">8.0</param>
+ </struct>
+ <struct name="meshView">
+ <param name="Type">lucMeshViewer</param>
+ <param name="Mesh">mesh-linear</param>
+ <param name="Colour">black</param>
+ </struct>
+ <struct name="velocityArrows">
+ <param name="Type">lucVectorArrows</param>
+ <param name="VectorVariable">VelocityField</param>
+ <param name="Colour">black</param>
+ <param name="arrowHeadSize">0.15</param>
+ <param name="lengthScale">0.15</param>
+ </struct>
+ <struct name="extensionViewport">
+ <param name="Type">lucViewport</param>
+ <param name="Camera">camera</param>
+ <list name="DrawingObject">
+ <param>meshView</param>
+ <param>velocityArrows</param>
+ <param>particleDots</param>
+ </list>
+ </struct>
+ <struct name="window" mergeType="merge">
+ <param name="Viewport">extensionViewport</param>
+ </struct>
</struct>
-</list>
+ <!-- Visualisation stuff -->
+ <param name="WindowHeight">592</param>
+ <param name="WindowWidth">800</param>
+ <param name="interactive">true</param>
+ <param name="BackgroundColour">white</param>
+
</StGermainData>
Added: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-extendX-squashY-ignoreZ.0of1.output.dat.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-extendX-squashY-ignoreZ.0of1.output.dat.expected 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-extendX-squashY-ignoreZ.0of1.output.dat.expected 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,10 @@
+Timestep = 1: Passed
+Timestep = 2: Passed
+Timestep = 3: Passed
+Timestep = 4: Passed
+Timestep = 5: Passed
+Timestep = 6: Passed
+Timestep = 7: Passed
+Timestep = 8: Passed
+Timestep = 9: Passed
+Timestep = 10: Passed
Added: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-extendX-squashY-ignoreZ.0of2.output.dat.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-extendX-squashY-ignoreZ.0of2.output.dat.expected 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-extendX-squashY-ignoreZ.0of2.output.dat.expected 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,10 @@
+Timestep = 1: Passed
+Timestep = 2: Passed
+Timestep = 3: Passed
+Timestep = 4: Passed
+Timestep = 5: Passed
+Timestep = 6: Passed
+Timestep = 7: Passed
+Timestep = 8: Passed
+Timestep = 9: Passed
+Timestep = 10: Passed
Added: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-extendX-squashY-squashZ.0of1.output.dat.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-extendX-squashY-squashZ.0of1.output.dat.expected 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-extendX-squashY-squashZ.0of1.output.dat.expected 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,10 @@
+Timestep = 1: Passed
+Timestep = 2: Passed
+Timestep = 3: Passed
+Timestep = 4: Passed
+Timestep = 5: Passed
+Timestep = 6: Passed
+Timestep = 7: Passed
+Timestep = 8: Passed
+Timestep = 9: Passed
+Timestep = 10: Passed
Added: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-extendX-squashY-squashZ.0of2.output.dat.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-extendX-squashY-squashZ.0of2.output.dat.expected 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-extendX-squashY-squashZ.0of2.output.dat.expected 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,10 @@
+Timestep = 1: Passed
+Timestep = 2: Passed
+Timestep = 3: Passed
+Timestep = 4: Passed
+Timestep = 5: Passed
+Timestep = 6: Passed
+Timestep = 7: Passed
+Timestep = 8: Passed
+Timestep = 9: Passed
+Timestep = 10: Passed
Added: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-extendX-squashY.0of1.output.dat.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-extendX-squashY.0of1.output.dat.expected 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-extendX-squashY.0of1.output.dat.expected 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,10 @@
+Timestep = 1: Passed
+Timestep = 2: Passed
+Timestep = 3: Passed
+Timestep = 4: Passed
+Timestep = 5: Passed
+Timestep = 6: Passed
+Timestep = 7: Passed
+Timestep = 8: Passed
+Timestep = 9: Passed
+Timestep = 10: Passed
Added: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-extendX-squashY.0of2.output.dat.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-extendX-squashY.0of2.output.dat.expected 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-extendX-squashY.0of2.output.dat.expected 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,10 @@
+Timestep = 1: Passed
+Timestep = 2: Passed
+Timestep = 3: Passed
+Timestep = 4: Passed
+Timestep = 5: Passed
+Timestep = 6: Passed
+Timestep = 7: Passed
+Timestep = 8: Passed
+Timestep = 9: Passed
+Timestep = 10: Passed
Added: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-irregularCausingBCs.0of1.errorStream.txt.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-irregularCausingBCs.0of1.errorStream.txt.expected 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-irregularCausingBCs.0of1.errorStream.txt.expected 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1 @@
+Error - in Underworld_MovingMesh_CalculateMinOrMaxCoordsOnSidewall(): While calculating new coords to remesh to in axis I for mesh "mesh-linear" with element layout type ParallelPipedHexaEL, found side wall node 6 (with IJK={0,1,0}, local index 6 and coord={0.00,0.20,0.00}) has new coord in remeshAxis of 0.02 (= coord 0.00 + new vel 0.20 in remesh axis * dt=0.10), but already calculated side wall node 5 (local index 180) has new wall coord in remesh axis of 0.00. This would cause irregular deformation, which is not supported for this mesh type. Check your Boundary Condition specifications.
Added: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-normalX-ignoreY.0of1.output.dat.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-normalX-ignoreY.0of1.output.dat.expected 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-normalX-ignoreY.0of1.output.dat.expected 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,10 @@
+Timestep = 1: Passed
+Timestep = 2: Passed
+Timestep = 3: Passed
+Timestep = 4: Passed
+Timestep = 5: Passed
+Timestep = 6: Passed
+Timestep = 7: Passed
+Timestep = 8: Passed
+Timestep = 9: Passed
+Timestep = 10: Passed
Added: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-normalX-ignoreY.0of2.output.dat.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-normalX-ignoreY.0of2.output.dat.expected 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-normalX-ignoreY.0of2.output.dat.expected 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,10 @@
+Timestep = 1: Passed
+Timestep = 2: Passed
+Timestep = 3: Passed
+Timestep = 4: Passed
+Timestep = 5: Passed
+Timestep = 6: Passed
+Timestep = 7: Passed
+Timestep = 8: Passed
+Timestep = 9: Passed
+Timestep = 10: Passed
Added: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-normalX.0of1.output.dat.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-normalX.0of1.output.dat.expected 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-normalX.0of1.output.dat.expected 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,10 @@
+Timestep = 1: Passed
+Timestep = 2: Passed
+Timestep = 3: Passed
+Timestep = 4: Passed
+Timestep = 5: Passed
+Timestep = 6: Passed
+Timestep = 7: Passed
+Timestep = 8: Passed
+Timestep = 9: Passed
+Timestep = 10: Passed
Added: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-normalX.0of2.output.dat.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-normalX.0of2.output.dat.expected 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension-normalX.0of2.output.dat.expected 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,10 @@
+Timestep = 1: Passed
+Timestep = 2: Passed
+Timestep = 3: Passed
+Timestep = 4: Passed
+Timestep = 5: Passed
+Timestep = 6: Passed
+Timestep = 7: Passed
+Timestep = 8: Passed
+Timestep = 9: Passed
+Timestep = 10: Passed
Deleted: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension.0of1.output.dat.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension.0of1.output.dat.expected 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension.0of1.output.dat.expected 2006-06-28 10:06:01 UTC (rev 3900)
@@ -1,10 +0,0 @@
-Timestep = 1: Passed
-Timestep = 2: Passed
-Timestep = 3: Passed
-Timestep = 4: Passed
-Timestep = 5: Passed
-Timestep = 6: Passed
-Timestep = 7: Passed
-Timestep = 8: Passed
-Timestep = 9: Passed
-Timestep = 10: Passed
Deleted: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension.0of2.output.dat.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension.0of2.output.dat.expected 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/expected/testMovingMeshExtension.0of2.output.dat.expected 2006-06-28 10:06:01 UTC (rev 3900)
@@ -1,10 +0,0 @@
-Timestep = 1: Passed
-Timestep = 2: Passed
-Timestep = 3: Passed
-Timestep = 4: Passed
-Timestep = 5: Passed
-Timestep = 6: Passed
-Timestep = 7: Passed
-Timestep = 8: Passed
-Timestep = 9: Passed
-Timestep = 10: Passed
Property changes on: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/log
___________________________________________________________________
Name: svn:ignore
+ *.out
*.error
Property changes on: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/output
___________________________________________________________________
Name: svn:ignore
- input.xml
+ errorStream.txt
input.xml
output.dat
*.png
*.mpeg
Deleted: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/output/lucWindow_0.mpeg
===================================================================
Modified: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/plugins/testMovingMesh.c
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/plugins/testMovingMesh.c 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/plugins/testMovingMesh.c 2006-06-28 10:06:01 UTC (rev 3900)
@@ -15,12 +15,68 @@
return Dictionary_GetDouble_WithDefault( context->dictionary, "dt", 0.01 );
}
+void MovingMeshTestVelBCs_IncreasingWithY( Node_LocalIndex node_lI, Variable_Index var_I, void* _context, void* _result ) {
+ DiscretisationContext* context = (DiscretisationContext*)_context;
+ FeVariable* feVariable = NULL;
+ FiniteElement_Mesh* mesh = NULL;
+ BlockGeometry* geometry = NULL;
+ double* result = (double*) _result;
+ double* coord;
+
+ feVariable = (FeVariable*)FieldVariable_Register_GetByName( context->fieldVariable_Register, "VelocityField" );
+ mesh = feVariable->feMesh;
+ geometry = (BlockGeometry*)((ParallelPipedHexaEL*)mesh->layout->elementLayout)->geometry;
+
+ /* Find coordinate of node */
+ coord = Mesh_CoordAt( mesh, node_lI );
+
+ *result = ( coord[J_AXIS] - geometry->min[J_AXIS] ) / ( geometry->max[J_AXIS] - geometry->min[J_AXIS] );
+}
+
+
+void MovingMeshTestVelBCs_ToCentreY( Node_LocalIndex node_lI, Variable_Index var_I, void* _context, void* _result ) {
+ DiscretisationContext* context = (DiscretisationContext*)_context;
+ FeVariable* feVariable = NULL;
+ FiniteElement_Mesh* mesh = NULL;
+ BlockGeometry* geometry = NULL;
+ double* result = (double*) _result;
+ double* coord;
+ double toCentreJ_Max = 0;
+ double boxHeight = 0;
+ double centreInJ = 0;
+ double coordJ_RelativeToCentreJ = 0;
+
+ feVariable = (FeVariable*)FieldVariable_Register_GetByName( context->fieldVariable_Register, "VelocityField" );
+ mesh = feVariable->feMesh;
+ geometry = (BlockGeometry*)((ParallelPipedHexaEL*)mesh->layout->elementLayout)->geometry;
+
+ /* Find coordinate of node */
+ coord = Mesh_CoordAt( mesh, node_lI );
+
+ boxHeight = geometry->max[J_AXIS] - geometry->min[J_AXIS];
+ centreInJ = ( geometry->max[J_AXIS] + geometry->min[J_AXIS] ) / 2;
+ coordJ_RelativeToCentreJ = coord[J_AXIS] - centreInJ;
+
+ toCentreJ_Max = Dictionary_GetDouble_WithDefault( context->dictionary, "toCentreJ_Max", 1.0 );
+ /* Need the -1 factor to "flip" so both above and below coords go towards the centre */
+ *result = (-1) * coordJ_RelativeToCentreJ / (boxHeight / 2) * toCentreJ_Max;
+}
+
+
void construct( PICelleratorContext* context ) {
MaterialPointsSwarm* materialSwarm;
/* Add original pos to particle */
materialSwarm = (MaterialPointsSwarm*) LiveComponentRegister_Get( context->CF->LCRegister, "materialSwarm" );
handle = ExtensionManager_Add( materialSwarm->particleExtensionMgr, CURR_MODULE_NAME, sizeof( Coord ) );
+
+ ConditionFunction_Register_Add( context->condFunc_Register,
+ ConditionFunction_New( MovingMeshTestVelBCs_IncreasingWithY, "MovingMeshTestVelBCs_IncreasingWithY" ) );
+ ConditionFunction_Register_Add( context->condFunc_Register,
+ ConditionFunction_New( MovingMeshTestVelBCs_ToCentreY, "MovingMeshTestVelBCs_ToCentreY" ) );
+
+ /* Need to do this so we can test the remesher handles incorrect BCs properly */
+ stJournal->firewallProducesAssert = False;
}
void storeOriginalPos( PICelleratorContext* context ) {
@@ -58,16 +114,22 @@
Dictionary* dictionary = context->dictionary;
Stream* stream = Journal_Register( Info_Type, CURR_MODULE_NAME );
double tolerance;
+ Dimension_Index dim;
/* BIG HACK - SHOULD DO PROPERLEY */
startLeft = Dictionary_GetDouble( dictionary, "minX" );
startRight = Dictionary_GetDouble( dictionary, "maxX" );
velocityLeft = -0.5;
velocityRight = +0.5;
+ dim = 2;
/* Add original pos to particle */
materialSwarm = (MaterialPointsSwarm*) LiveComponentRegister_Get( context->CF->LCRegister, "materialSwarm" );
+ tolerance = Dictionary_GetDouble_WithDefault( dictionary, "tolerance", 1.0e-6 );
+
+ Journal_Printf( stream, "Timestep = %u: ", context->timeStep );
+
for ( lParticle_I = 0 ; lParticle_I < materialSwarm->particleLocalCount ; lParticle_I++ ) {
particle = (GlobalParticle*)Swarm_ParticleAt( materialSwarm, lParticle_I );
@@ -82,14 +144,21 @@
maxError = MAX( maxError, fabs( analyticCoord - coord[ I_AXIS ] ) );
+ Journal_Firewall( maxError < tolerance, stream,
+ "Failed - for local particle %u, orig coord was (%.3f,%.3f,%.3f), thus given "
+ "startLeft of %.3f, startRight of %.3f, velocityLeft of %.3f, velocityRight of "
+ "%.3f, and currTime of %.2f (calc. currLeft is %.3f and currRight is %.3f):\n"
+ "\tanalytic coord in I axis is %.3f, but actual coord in I is %.3f.\n",
+ lParticle_I, originalCoord[0], originalCoord[1], originalCoord[2],
+ startLeft, startRight, velocityLeft, velocityRight, time, currLeft, currRight,
+ analyticCoord, coord[I_AXIS] );
+
if ( maxError > 0.45 )
abort();
}
MPI_Allreduce( &maxError, &errorGlobal, 1, MPI_DOUBLE, MPI_MAX, MPI_COMM_WORLD );
- tolerance = Dictionary_GetDouble_WithDefault( dictionary, "tolerance", 1.0e-6 );
- Journal_Printf( stream, "Timestep = %u: ", context->timeStep );
if ( errorGlobal < tolerance )
Journal_Printf( stream, "Passed\n" );
else
@@ -110,7 +179,7 @@
ContextEP_Append( context, AbstractContext_EP_ConstructExtensions, construct );
ContextEP_Append( context, AbstractContext_EP_IC, storeOriginalPos );
ContextEP_Prepend( context, AbstractContext_EP_Step, check );
- EP_AppendClassHook( Context_GetEntryPoint( context, FiniteElementContext_EP_SetDt ), dt, context );
+ EP_AppendClassHook( Context_GetEntryPoint( context, FiniteElementContext_EP_CalcDt ), dt, context );
Stream_RedirectFile_WithPrependedPath( stream, context->outputPath, "output.dat" );
Stream_SetPrintingRank( stream, 0 );
Modified: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testExtension.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testExtension.xml 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testExtension.xml 2006-06-28 10:06:01 UTC (rev 3900)
@@ -23,63 +23,57 @@
<!-- Simulation control -->
<param name="maxTimeSteps"> 10 </param>
<param name="outputPath"> ./output </param>
- <param name="dumpEvery"> 10 </param>
+ <param name="dumpEvery"> 1 </param>
<param name="SimpleShearCentreY"> 0.5 </param>
<param name="particlesPerCell"> 6 </param>
<!-- Journal Control -->
<param name="journal.info.Context-verbose">True</param>
<param name="journal-level.info.ComponentFactory">2</param>
+
<param name="journal.debug">t</param>
+
<param name="journal-enable-branch.debug.StG_FEM">t</param>
+ <param name="journal-level-branch.debug.StG_FEM"> 2 </param>
+
+ <param name="journal-enable.debug.Underworld_MovingMesh"> t </param>
+ <param name="journal-level.debug.Underworld_MovingMesh"> 1 </param>
+
<param name="journal-enable.debug.lucDebug">t</param>
<param name="journal-enable.info.lucInfo">t</param>
<param name="journal-level.debug.lucDebug">2</param>
<param name="journal-level.info.lucInfo">2</param>
- <param name="journal-level-branch.debug.StG_FEM"> 2 </param>
+
+ <!-- want to redirect this error stream so we can test it -->
+ <param name="journal-file.error.Underworld_MovingMesh">./output/errorStream.txt</param>
<!-- Geometry & Mesh setup -->
- <param name="dim"> 2 </param>
- <param name="elementResI"> 16 </param>
- <param name="elementResJ"> 16 </param>
- <param name="elementResK"> 16 </param>
+ <param name="dim"> 3 </param>
+ <param name="elementResI"> 5 </param>
+ <param name="elementResJ"> 5 </param>
+ <param name="elementResK"> 5 </param>
<param name="shadowDepth"> 1 </param>
<param name="minX"> 0.0 </param>
<param name="minY"> 0.0 </param>
<param name="minZ"> 0.0 </param>
<param name="maxX"> 1.0 </param>
<param name="maxY"> 1.0 </param>
- <param name="maxZ"> 1.0 </param>
+
+ <!-- Remeshing control -->
+ <param name="remeshAccordingToIAxis"> True </param>
+ <param name="remeshAccordingToJAxis"> False </param>
+ <param name="remeshAccordingToKAxis"> False </param>
+
<param name="allowUnbalancing"> True </param>
<!-- Over-ride the swarm weights to be constant so Voronoi deosn't slow us down -->
<struct name="components" mergeType="merge">
- <struct name="weights" mergeType="replace">
+ <struct name="" mergeType="replace">
<param name="Type">ConstantWeights</param>
</struct>
</struct>
- <!-- Velocity BCs -->
- <struct name="velocityICs">
- <param name="type">CompositeVC</param>
- <list name="vcList">
- <struct>
- <param name="type"> AllNodesVC </param>
- <list name="variables">
- <struct>
- <param name="name">vx</param>
- <param name="type">func</param>
- <param name="value"> Velocity_SimpleShear </param>
- </struct>
- <struct>
- <param name="name">vy</param>
- <param name="type">double</param>
- <param name="value"> 0.0 </param>
- </struct>
- </list>
- </struct>
- </list>
- </struct>
+ <!-- No BCs or ICs loaded as yet - user should add another file at the command line -->
</StGermainData>
Added: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-extendX-squashY-ignoreZ.0of1.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-extendX-squashY-ignoreZ.0of1.sh 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-extendX-squashY-ignoreZ.0of1.sh 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,9 @@
+#!/bin/sh
+
+TEST_SCRIPT=./VMake/executableTester.sh
+until test -r ${TEST_SCRIPT} ; do
+ TEST_SCRIPT=../${TEST_SCRIPT}
+done
+. ${TEST_SCRIPT}
+
+runAndHandleSystemTestStdLocations "Underworld testExtension.xml velocityICsAndBCs.extensionX-squashY-squashZ.xml --remeshAccordingToJAxis=True" "$0" "$@"
Property changes on: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-extendX-squashY-ignoreZ.0of1.sh
___________________________________________________________________
Name: svn:executable
+ *
Name: svn:keywords
+ LastChangedDate Author Id
Name: svn:eol-style
+ native
Added: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-extendX-squashY-ignoreZ.0of2.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-extendX-squashY-ignoreZ.0of2.sh 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-extendX-squashY-ignoreZ.0of2.sh 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,9 @@
+#!/bin/sh
+
+TEST_SCRIPT=./VMake/executableTester.sh
+until test -r ${TEST_SCRIPT} ; do
+ TEST_SCRIPT=../${TEST_SCRIPT}
+done
+. ${TEST_SCRIPT}
+
+runAndHandleSystemTestStdLocations "Underworld testExtension.xml velocityICsAndBCs.extensionX-squashY-squashZ.xml --remeshAccordingToJAxis=True" "$0" "$@"
Property changes on: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-extendX-squashY-ignoreZ.0of2.sh
___________________________________________________________________
Name: svn:executable
+ *
Name: svn:keywords
+ LastChangedDate Author Id
Name: svn:eol-style
+ native
Added: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-extendX-squashY-squashZ.0of1.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-extendX-squashY-squashZ.0of1.sh 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-extendX-squashY-squashZ.0of1.sh 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,9 @@
+#!/bin/sh
+
+TEST_SCRIPT=./VMake/executableTester.sh
+until test -r ${TEST_SCRIPT} ; do
+ TEST_SCRIPT=../${TEST_SCRIPT}
+done
+. ${TEST_SCRIPT}
+
+runAndHandleSystemTestStdLocations "Underworld testExtension.xml velocityICsAndBCs.extensionX-squashY-squashZ.xml --remeshAccordingToJAxis=True --remeshAccordingToKAxis=True" "$0" "$@"
Property changes on: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-extendX-squashY-squashZ.0of1.sh
___________________________________________________________________
Name: svn:executable
+ *
Name: svn:keywords
+ LastChangedDate Author Id
Name: svn:eol-style
+ native
Added: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-extendX-squashY-squashZ.0of2.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-extendX-squashY-squashZ.0of2.sh 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-extendX-squashY-squashZ.0of2.sh 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,9 @@
+#!/bin/sh
+
+TEST_SCRIPT=./VMake/executableTester.sh
+until test -r ${TEST_SCRIPT} ; do
+ TEST_SCRIPT=../${TEST_SCRIPT}
+done
+. ${TEST_SCRIPT}
+
+runAndHandleSystemTestStdLocations "Underworld testExtension.xml velocityICsAndBCs.extensionX-squashY-squashZ.xml --remeshAccordingToJAxis=True --remeshAccordingToKAxis=True" "$0" "$@"
Property changes on: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-extendX-squashY-squashZ.0of2.sh
___________________________________________________________________
Name: svn:executable
+ *
Name: svn:keywords
+ LastChangedDate Author Id
Name: svn:eol-style
+ native
Added: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-extendX-squashY.0of1.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-extendX-squashY.0of1.sh 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-extendX-squashY.0of1.sh 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,9 @@
+#!/bin/sh
+
+TEST_SCRIPT=./VMake/executableTester.sh
+until test -r ${TEST_SCRIPT} ; do
+ TEST_SCRIPT=../${TEST_SCRIPT}
+done
+. ${TEST_SCRIPT}
+
+runAndHandleSystemTestStdLocations "Underworld testExtension.xml velocityICsAndBCs.extensionX-squashY.xml --remeshAccordingToJAxis=True" "$0" "$@"
Property changes on: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-extendX-squashY.0of1.sh
___________________________________________________________________
Name: svn:executable
+ *
Name: svn:keywords
+ LastChangedDate Author Id
Name: svn:eol-style
+ native
Added: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-extendX-squashY.0of2.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-extendX-squashY.0of2.sh 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-extendX-squashY.0of2.sh 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,9 @@
+#!/bin/sh
+
+TEST_SCRIPT=./VMake/executableTester.sh
+until test -r ${TEST_SCRIPT} ; do
+ TEST_SCRIPT=../${TEST_SCRIPT}
+done
+. ${TEST_SCRIPT}
+
+runAndHandleSystemTestStdLocations "Underworld testExtension.xml velocityICsAndBCs.extensionX-squashY.xml --remeshAccordingToJAxis=True" "$0" "$@"
Property changes on: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-extendX-squashY.0of2.sh
___________________________________________________________________
Name: svn:executable
+ *
Name: svn:keywords
+ LastChangedDate Author Id
Name: svn:eol-style
+ native
Added: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-irregularCausingBCs.0of1.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-irregularCausingBCs.0of1.sh 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-irregularCausingBCs.0of1.sh 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,9 @@
+#!/bin/sh
+
+TEST_SCRIPT=./VMake/executableTester.sh
+until test -r ${TEST_SCRIPT} ; do
+ TEST_SCRIPT=../${TEST_SCRIPT}
+done
+. ${TEST_SCRIPT}
+
+runAndHandleSystemTestStdLocations "Underworld testExtension.xml velocityICsAndBCs.irregularCausing.xml" "$0" "$@"
Property changes on: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-irregularCausingBCs.0of1.sh
___________________________________________________________________
Name: svn:executable
+ *
Name: svn:keywords
+ LastChangedDate Author Id
Name: svn:eol-style
+ native
Added: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-normalX-ignoreY.0of1.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-normalX-ignoreY.0of1.sh 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-normalX-ignoreY.0of1.sh 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,9 @@
+#!/bin/sh
+
+TEST_SCRIPT=./VMake/executableTester.sh
+until test -r ${TEST_SCRIPT} ; do
+ TEST_SCRIPT=../${TEST_SCRIPT}
+done
+. ${TEST_SCRIPT}
+
+runAndHandleSystemTestStdLocations "Underworld testExtension.xml velocityICsAndBCs.extensionX-squashY.xml" "$0" "$@"
Property changes on: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-normalX-ignoreY.0of1.sh
___________________________________________________________________
Name: svn:executable
+ *
Name: svn:keywords
+ LastChangedDate Author Id
Name: svn:eol-style
+ native
Added: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-normalX-ignoreY.0of2.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-normalX-ignoreY.0of2.sh 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-normalX-ignoreY.0of2.sh 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,9 @@
+#!/bin/sh
+
+TEST_SCRIPT=./VMake/executableTester.sh
+until test -r ${TEST_SCRIPT} ; do
+ TEST_SCRIPT=../${TEST_SCRIPT}
+done
+. ${TEST_SCRIPT}
+
+runAndHandleSystemTestStdLocations "Underworld testExtension.xml velocityICsAndBCs.extensionX-squashY.xml" "$0" "$@"
Property changes on: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-normalX-ignoreY.0of2.sh
___________________________________________________________________
Name: svn:executable
+ *
Name: svn:keywords
+ LastChangedDate Author Id
Name: svn:eol-style
+ native
Added: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-normalX.0of1.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-normalX.0of1.sh 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-normalX.0of1.sh 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,9 @@
+#!/bin/sh
+
+TEST_SCRIPT=./VMake/executableTester.sh
+until test -r ${TEST_SCRIPT} ; do
+ TEST_SCRIPT=../${TEST_SCRIPT}
+done
+. ${TEST_SCRIPT}
+
+runAndHandleSystemTestStdLocations "Underworld testExtension.xml velocityICsAndBCs.normalExtensionX.xml" "$0" "$@"
Property changes on: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-normalX.0of1.sh
___________________________________________________________________
Name: svn:executable
+ *
Name: svn:keywords
+ LastChangedDate Author Id
Name: svn:eol-style
+ native
Added: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-normalX.0of2.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-normalX.0of2.sh 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-normalX.0of2.sh 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,9 @@
+#!/bin/sh
+
+TEST_SCRIPT=./VMake/executableTester.sh
+until test -r ${TEST_SCRIPT} ; do
+ TEST_SCRIPT=../${TEST_SCRIPT}
+done
+. ${TEST_SCRIPT}
+
+runAndHandleSystemTestStdLocations "Underworld testExtension.xml velocityICsAndBCs.normalExtensionX.xml" "$0" "$@"
Property changes on: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension-normalX.0of2.sh
___________________________________________________________________
Name: svn:executable
+ *
Name: svn:keywords
+ LastChangedDate Author Id
Name: svn:eol-style
+ native
Deleted: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension.0of1.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension.0of1.sh 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension.0of1.sh 2006-06-28 10:06:01 UTC (rev 3900)
@@ -1,9 +0,0 @@
-#!/bin/sh
-
-TEST_SCRIPT=./VMake/executableTester.sh
-until test -r ${TEST_SCRIPT} ; do
- TEST_SCRIPT=../${TEST_SCRIPT}
-done
-. ${TEST_SCRIPT}
-
-runAndHandleSystemTestStdLocations "Underworld testExtension.xml velocityIC.extension.xml" "$0" "$@"
Deleted: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension.0of2.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension.0of2.sh 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/testMovingMeshExtension.0of2.sh 2006-06-28 10:06:01 UTC (rev 3900)
@@ -1,9 +0,0 @@
-#!/bin/sh
-
-TEST_SCRIPT=./VMake/executableTester.sh
-until test -r ${TEST_SCRIPT} ; do
- TEST_SCRIPT=../${TEST_SCRIPT}
-done
-. ${TEST_SCRIPT}
-
-runAndHandleSystemTestStdLocations "Underworld testExtension.xml velocityIC.extension.xml" "$0" "$@"
Deleted: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/velocityIC.extension.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/velocityIC.extension.xml 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/velocityIC.extension.xml 2006-06-28 10:06:01 UTC (rev 3900)
@@ -1,31 +0,0 @@
-<?xml version="1.0"?>
-<!DOCTYPE StGermainData SYSTEM "stgermain.dtd">
-
-<StGermainData xmlns="http://www.vpac.org/StGermain/XML_IO_Handler/Jun2003">
-
- <param name="ExtensionCentreX">0.5</param>
-
- <!-- Velocity BCs -->
- <struct name="velocityICs" mergeType="replace">
- <param name="type">CompositeVC</param>
- <list name="vcList">
- <struct>
- <param name="type"> AllNodesVC </param>
- <list name="variables">
- <struct>
- <param name="name">vx</param>
- <param name="type">func</param>
- <param name="value"> Velocity_Extension </param>
- </struct>
- <struct>
- <param name="name">vy</param>
- <param name="type">double</param>
- <param name="value"> 0.0 </param>
- </struct>
- </list>
- </struct>
- </list>
- </struct>
-
-</StGermainData>
-
Added: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/velocityICsAndBCs.extensionX-squashY-squashZ.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/velocityICsAndBCs.extensionX-squashY-squashZ.xml 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/velocityICsAndBCs.extensionX-squashY-squashZ.xml 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,115 @@
+<?xml version="1.0"?>
+<!DOCTYPE StGermainData SYSTEM "stgermain.dtd">
+
+<StGermainData xmlns="http://www.vpac.org/StGermain/XML_IO_Handler/Jun2003">
+
+ <param name="ExtensionCentreX">0.5</param>
+ <param name="ToCentreJ_Max">0.5</param>
+ <param name="ToCentreK_Max">2.0</param>
+
+ <!-- Velocity BCs -->
+ <struct name="velocityICs" mergeType="replace">
+ <param name="type">CompositeVC</param>
+ <list name="vcList">
+ <struct>
+ <param name="type"> AllNodesVC </param>
+ <list name="variables">
+ <struct>
+ <param name="name">vx</param>
+ <param name="type">func</param>
+ <param name="value"> Velocity_Extension </param>
+ </struct>
+ <struct>
+ <param name="name">vy</param>
+ <param name="type">double</param>
+ <param name="value"> 0.0 </param>
+ </struct>
+ </list>
+ </struct>
+ </list>
+ </struct>
+
+ <struct name="velocityBCs" mergeType="replace">
+ <param name="type">CompositeVC</param>
+ <list name="vcList">
+ <struct>
+ <param name="type"> WallVC </param>
+ <param name="wall"> left </param>
+ <list name="variables">
+ <struct>
+ <param name="name">vx</param>
+ <param name="type">func</param>
+ <param name="value"> Velocity_Extension </param>
+ </struct>
+ <struct>
+ <param name="name">vy</param>
+ <param name="type">func</param>
+ <param name="value"> MovingMeshTestVelBCs_ToCentreY </param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type"> WallVC </param>
+ <param name="wall"> right </param>
+ <list name="variables">
+ <struct>
+ <param name="name">vx</param>
+ <param name="type">func</param>
+ <param name="value"> Velocity_Extension </param>
+ </struct>
+ <struct>
+ <param name="name">vy</param>
+ <param name="type">func</param>
+ <param name="value"> MovingMeshTestVelBCs_ToCentreY </param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type"> WallVC </param>
+ <param name="wall"> top </param>
+ <list name="variables">
+ <struct>
+ <param name="name">vy</param>
+ <param name="type">double</param>
+ <param name="value"> -0.1 </param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type"> WallVC </param>
+ <param name="wall"> bottom </param>
+ <list name="variables">
+ <struct>
+ <param name="name">vy</param>
+ <param name="type">double</param>
+ <param name="value"> 0.1 </param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type"> WallVC </param>
+ <param name="wall"> front </param>
+ <list name="variables">
+ <struct>
+ <param name="name">vz</param>
+ <param name="type">double</param>
+ <param name="value"> -0.3 </param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type"> WallVC </param>
+ <param name="wall"> back </param>
+ <list name="variables">
+ <struct>
+ <param name="name">vz</param>
+ <param name="type">double</param>
+ <param name="value"> 0.3 </param>
+ </struct>
+ </list>
+ </struct>
+ </list>
+ </struct>
+
+</StGermainData>
+
Added: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/velocityICsAndBCs.extensionX-squashY.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/velocityICsAndBCs.extensionX-squashY.xml 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/velocityICsAndBCs.extensionX-squashY.xml 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,92 @@
+<?xml version="1.0"?>
+<!DOCTYPE StGermainData SYSTEM "stgermain.dtd">
+
+<StGermainData xmlns="http://www.vpac.org/StGermain/XML_IO_Handler/Jun2003">
+
+ <param name="ExtensionCentreX">0.5</param>
+ <param name="ToCentreJ_Max">0.5</param>
+
+ <!-- Velocity BCs -->
+ <struct name="velocityICs" mergeType="replace">
+ <param name="type">CompositeVC</param>
+ <list name="vcList">
+ <struct>
+ <param name="type"> AllNodesVC </param>
+ <list name="variables">
+ <struct>
+ <param name="name">vx</param>
+ <param name="type">func</param>
+ <param name="value"> Velocity_Extension </param>
+ </struct>
+ <struct>
+ <param name="name">vy</param>
+ <param name="type">double</param>
+ <param name="value"> 0.0 </param>
+ </struct>
+ </list>
+ </struct>
+ </list>
+ </struct>
+
+ <struct name="velocityBCs" mergeType="replace">
+ <param name="type">CompositeVC</param>
+ <list name="vcList">
+ <struct>
+ <param name="type"> WallVC </param>
+ <param name="wall"> left </param>
+ <list name="variables">
+ <struct>
+ <param name="name">vx</param>
+ <param name="type">func</param>
+ <param name="value"> Velocity_Extension </param>
+ </struct>
+ <struct>
+ <param name="name">vy</param>
+ <param name="type">func</param>
+ <param name="value"> MovingMeshTestVelBCs_ToCentreY </param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type"> WallVC </param>
+ <param name="wall"> right </param>
+ <list name="variables">
+ <struct>
+ <param name="name">vx</param>
+ <param name="type">func</param>
+ <param name="value"> Velocity_Extension </param>
+ </struct>
+ <struct>
+ <param name="name">vy</param>
+ <param name="type">func</param>
+ <param name="value"> MovingMeshTestVelBCs_ToCentreY </param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type"> WallVC </param>
+ <param name="wall"> top </param>
+ <list name="variables">
+ <struct>
+ <param name="name">vy</param>
+ <param name="type">double</param>
+ <param name="value"> -0.1 </param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type"> WallVC </param>
+ <param name="wall"> bottom </param>
+ <list name="variables">
+ <struct>
+ <param name="name">vy</param>
+ <param name="type">double</param>
+ <param name="value"> 0.1 </param>
+ </struct>
+ </list>
+ </struct>
+ </list>
+ </struct>
+
+</StGermainData>
+
Added: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/velocityICsAndBCs.irregularCausing.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/velocityICsAndBCs.irregularCausing.xml 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/velocityICsAndBCs.irregularCausing.xml 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,61 @@
+<?xml version="1.0"?>
+<!DOCTYPE StGermainData SYSTEM "stgermain.dtd">
+
+<StGermainData xmlns="http://www.vpac.org/StGermain/XML_IO_Handler/Jun2003">
+
+ <param name="ExtensionCentreX">0.5</param>
+
+ <!-- Velocity BCs -->
+ <struct name="velocityICs" mergeType="replace">
+ <param name="type">CompositeVC</param>
+ <list name="vcList">
+ <struct>
+ <param name="type"> AllNodesVC </param>
+ <list name="variables">
+ <struct>
+ <param name="name">vx</param>
+ <param name="type">func</param>
+ <param name="value"> Velocity_Extension </param>
+ </struct>
+ <struct>
+ <param name="name">vy</param>
+ <param name="type">double</param>
+ <param name="value"> 0.0 </param>
+ </struct>
+ </list>
+ </struct>
+ </list>
+ </struct>
+
+ <struct name="velocityBCs" mergeType="replace">
+ <param name="type">CompositeVC</param>
+ <list name="vcList">
+ <struct>
+ <param name="type"> WallVC </param>
+ <param name="wall"> left </param>
+ <list name="variables">
+ <struct>
+ <param name="name">vx</param>
+ <param name="type">func</param>
+ <!-- deliberately choose a function that varies with J(y) along the left
+ wall to see if the remesher catches this as bad. -->
+ <param name="value"> MovingMeshTestVelBCs_IncreasingWithY </param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type"> WallVC </param>
+ <param name="wall"> right </param>
+ <list name="variables">
+ <struct>
+ <param name="name">vx</param>
+ <param name="type">func</param>
+ <param name="value"> Velocity_Extension </param>
+ </struct>
+ </list>
+ </struct>
+ </list>
+ </struct>
+
+</StGermainData>
+
Added: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/velocityICsAndBCs.normalExtensionX.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/velocityICsAndBCs.normalExtensionX.xml 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/velocityICsAndBCs.normalExtensionX.xml 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,69 @@
+<?xml version="1.0"?>
+<!DOCTYPE StGermainData SYSTEM "stgermain.dtd">
+
+<StGermainData xmlns="http://www.vpac.org/StGermain/XML_IO_Handler/Jun2003">
+
+ <param name="ExtensionCentreX">0.5</param>
+
+ <!-- Velocity BCs -->
+ <struct name="velocityICs" mergeType="replace">
+ <param name="type">CompositeVC</param>
+ <list name="vcList">
+ <struct>
+ <param name="type"> AllNodesVC </param>
+ <list name="variables">
+ <struct>
+ <param name="name">vx</param>
+ <param name="type">func</param>
+ <param name="value"> Velocity_Extension </param>
+ </struct>
+ <struct>
+ <param name="name">vy</param>
+ <param name="type">double</param>
+ <param name="value"> 0.0 </param>
+ </struct>
+ </list>
+ </struct>
+ </list>
+ </struct>
+
+ <struct name="velocityBCs" mergeType="replace">
+ <param name="type">CompositeVC</param>
+ <list name="vcList">
+ <struct>
+ <param name="type"> WallVC </param>
+ <param name="wall"> left </param>
+ <list name="variables">
+ <struct>
+ <param name="name">vx</param>
+ <param name="type">func</param>
+ <param name="value"> Velocity_Extension </param>
+ </struct>
+ <struct>
+ <param name="name">vy</param>
+ <param name="type">double</param>
+ <param name="value"> 0.0 </param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type"> WallVC </param>
+ <param name="wall"> right </param>
+ <list name="variables">
+ <struct>
+ <param name="name">vx</param>
+ <param name="type">func</param>
+ <param name="value"> Velocity_Extension </param>
+ </struct>
+ <struct>
+ <param name="name">vy</param>
+ <param name="type">double</param>
+ <param name="value"> 0.0 </param>
+ </struct>
+ </list>
+ </struct>
+ </list>
+ </struct>
+
+</StGermainData>
+
Added: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/window.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/window.xml 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/window.xml 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1 @@
+link ../../../InputFiles/window.xml
\ No newline at end of file
Property changes on: long/3D/Gale/trunk/src/Underworld/plugins/MovingMesh/tests/window.xml
___________________________________________________________________
Name: svn:special
+ *
Added: long/3D/Gale/trunk/src/Underworld/plugins/Output/Nusselt_deltaT/Nusselt_deltaT.c
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/Output/Nusselt_deltaT/Nusselt_deltaT.c 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/Output/Nusselt_deltaT/Nusselt_deltaT.c 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,142 @@
+/*~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+** Copyright (c) 2005, Your Mom
+** All rights reserved.
+** Redistribution and use in source and binary forms, with or without modification,
+** are permitted provided that the following conditions are met:
+**
+** * Redistributions of source code must retain the above copyright notice,
+** this list of conditions and the following disclaimer.
+** * Redistributions in binary form must reproduce the above copyright
+** notice, this list of conditions and the following disclaimer in the
+** documentation and/or other materials provided with the distribution.
+** * Neither the name of the Monash University nor the names of its contributors
+** may be used to endorse or promote products derived from this software
+** without specific prior written permission.
+**
+** THIS SOFTWARE IS PROVIDED BY YOUR MOM AND CONTRIBUTORS
+** "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
+** THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
+** PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS
+** BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+** CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+** SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
+** HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
+** LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
+** OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+**
+**
+**~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~*/
+
+#include <mpi.h>
+#include <StGermain/StGermain.h>
+#include <StG_FEM/StG_FEM.h>
+#include <PICellerator/PICellerator.h>
+#include <Underworld/Underworld.h>
+#include <StG_FEM/FrequentOutput/FrequentOutput.h>
+
+#include "Nusselt_deltaT.h"
+
+const Type Underworld_Nusselt_deltaT_Type = "Underworld_Nusselt_deltaT";
+
+void _Underworld_Nusselt_deltaT_Construct( void* component, Stg_ComponentFactory* cf ) {
+ UnderworldContext* context;
+
+ context = Stg_ComponentFactory_ConstructByName( cf, "context", UnderworldContext, True );
+
+ /* Add functions to entry points */
+ Underworld_Nusselt_deltaT_Setup( context );
+ ContextEP_Append( context, AbstractContext_EP_FrequentOutput, Underworld_Nusselt_deltaT_Output );
+}
+
+void* _Underworld_Nusselt_deltaT_DefaultNew( Name name ) {
+ return _Codelet_New(
+ sizeof(Underworld_Nusselt_deltaT),
+ Underworld_Nusselt_deltaT_Type,
+ _Codelet_Delete,
+ _Codelet_Print,
+ _Codelet_Copy,
+ _Underworld_Nusselt_deltaT_DefaultNew,
+ _Underworld_Nusselt_deltaT_Construct,
+ _Codelet_Build,
+ _Codelet_Initialise,
+ _Codelet_Execute,
+ _Codelet_Destroy,
+ name );
+}
+
+Index Underworld_Nusselt_deltaT_Register( PluginsManager* pluginsManager ) {
+ return PluginsManager_Submit( pluginsManager, Underworld_Nusselt_deltaT_Type, "0", _Underworld_Nusselt_deltaT_DefaultNew );
+}
+
+
+
+void Underworld_Nusselt_deltaT_Setup( UnderworldContext* context ) {
+ FieldVariable_Register* fV_Register = context->fieldVariable_Register;
+ FieldVariable* temperatureGradientsField;
+ FieldVariable* velocityField;
+ FieldVariable* temperatureField;
+ OperatorFeVariable* advectiveHeatFluxField;
+ OperatorFeVariable* temperatureTotalDerivField;
+
+ Underworld_Nusselt_deltaT* self;
+
+ self = (Underworld_Nusselt_deltaT*)LiveComponentRegister_Get(
+ context->CF->LCRegister,
+ Underworld_Nusselt_deltaT_Type );
+
+ StG_FEM_FrequentOutput_PrintString( context, "Nu/DeltaT" );
+
+ Journal_Firewall(
+ context->gaussSwarm != NULL,
+ Underworld_Error,
+ "Cannot find gauss swarm. Cannot use %s.\n", CURR_MODULE_NAME );
+
+ /* Create Some FeVariables to calculate nusselt number */
+ temperatureField = FieldVariable_Register_GetByName( fV_Register, "TemperatureField" );
+ velocityField = FieldVariable_Register_GetByName( fV_Register, "VelocityField" );
+ temperatureGradientsField = FieldVariable_Register_GetByName( fV_Register, "TemperatureGradientsField" );
+
+ advectiveHeatFluxField = OperatorFeVariable_NewBinary(
+ "AdvectiveHeatFluxField",
+ temperatureField,
+ velocityField,
+ "VectorScale" );
+
+ temperatureTotalDerivField = OperatorFeVariable_NewBinary(
+ "TemperatureTotalDerivField",
+ advectiveHeatFluxField,
+ temperatureGradientsField,
+ "Subtraction" );
+
+ self->dTField = (FeVariable*) OperatorFeVariable_NewUnary(
+ "TemperatureTotalDerivField",
+ temperatureTotalDerivField,
+ "TakeSecondComponent" );
+ self->dTField->feMesh = ((FeVariable*)velocityField)->feMesh;
+
+}
+
+void Underworld_Nusselt_deltaT_Output( UnderworldContext* context ) {
+
+ Underworld_Nusselt_deltaT* self;
+ FieldVariable_Register* fV_Register = context->fieldVariable_Register;
+ FieldVariable* temperatureField;
+ double temp;
+
+ temperatureField = FieldVariable_Register_GetByName( fV_Register, "TemperatureField" );
+
+ self = (Underworld_Nusselt_deltaT*)LiveComponentRegister_Get(
+ context->CF->LCRegister,
+ Underworld_Nusselt_deltaT_Type );
+
+ // get_layer value
+ //self->shfl = FeVariable_AverageTopLayer( self->dTField, context->gaussSwarm, NULL, J_AXIS );
+ self->shfl = FeVariable_AverageTopLayer( self->dTField, context->gaussSwarm, J_AXIS );
+
+ temp = FeVariable_AveragePlane( temperatureField, J_AXIS, 0.0 );
+
+ self->shfl/=temp;
+
+
+ StG_FEM_FrequentOutput_PrintValue( context, self->shfl );
+}
Added: long/3D/Gale/trunk/src/Underworld/plugins/Output/Nusselt_deltaT/Nusselt_deltaT.h
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/Output/Nusselt_deltaT/Nusselt_deltaT.h 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/Output/Nusselt_deltaT/Nusselt_deltaT.h 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,47 @@
+/*~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+** Copyright (c) 2005, Monash Cluster Computing
+** All rights reserved.
+** Redistribution and use in source and binary forms, with or without modification,
+** are permitted provided that the following conditions are met:
+**
+** * Redistributions of source code must retain the above copyright notice,
+** this list of conditions and the following disclaimer.
+** * Redistributions in binary form must reproduce the above copyright
+** notice, this list of conditions and the following disclaimer in the
+** documentation and/or other materials provided with the distribution.
+** * Neither the name of the Monash University nor the names of its contributors
+** may be used to endorse or promote products derived from this software
+** without specific prior written permission.
+**
+** THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+** "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
+** THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
+** PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS
+** BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+** CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+** SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
+** HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
+** LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
+** OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+**
+**
+**
+**~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~*/
+
+
+#ifndef __UnderworldRheology_Nusselt_h__
+#define __UnderworldRheology_Nusselt_h__
+
+ extern const Type Underworld_Nusselt_deltaT_Type;
+ typedef struct {
+ __Codelet
+ FeVariable* temperatureVertDerivField;
+ FeVariable* dTField;
+ double shfl;
+ } Underworld_Nusselt_deltaT;
+
+ Index Underworld_Nusselt_deltaT_Register( PluginsManager* pluginsManager );
+ void Underworld_Nusselt_deltaT_Setup( UnderworldContext* context ) ;
+ void Underworld_Nusselt_deltaT_Output( UnderworldContext* context ) ;
+
+#endif
Added: long/3D/Gale/trunk/src/Underworld/plugins/Output/Nusselt_deltaT/makefile
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/Output/Nusselt_deltaT/makefile 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/Output/Nusselt_deltaT/makefile 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,24 @@
+
+#Finds the Absolute path to the Project Root directory
+SHELL := /bin/bash
+PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
+include ${PROJ_ROOT}/Makefile.system
+
+# Subdirectories
+subdirs := $(shell find * -type d -prune ! -name .svn )
+
+# Source Code and Header files
+SRCS := $(wildcard *.c)
+HDRS := $(wildcard *.h)
+
+# What to call the plugin
+modName := $(shell basename `pwd`)
+mod = ${PROJECT}_${modName}
+
+# Where to put header files
+includes = ${PROJECT}/${modName}
+
+# External Libraries and Headers
+packages = PICELLERATOR STG_FEM STGERMAIN PETSC MPI XML PYTHON
+
+include ${PROJ_ROOT}/Makefile.vmake
Added: long/3D/Gale/trunk/src/Underworld/plugins/Output/Shfl/Shfl.c
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/Output/Shfl/Shfl.c 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/Output/Shfl/Shfl.c 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,141 @@
+/*~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+** Copyright (c) 2005, Your Mom
+** All rights reserved.
+** Redistribution and use in source and binary forms, with or without modification,
+** are permitted provided that the following conditions are met:
+**
+** * Redistributions of source code must retain the above copyright notice,
+** this list of conditions and the following disclaimer.
+** * Redistributions in binary form must reproduce the above copyright
+** notice, this list of conditions and the following disclaimer in the
+** documentation and/or other materials provided with the distribution.
+** * Neither the name of the Monash University nor the names of its contributors
+** may be used to endorse or promote products derived from this software
+** without specific prior written permission.
+**
+** THIS SOFTWARE IS PROVIDED BY YOUR MOM AND CONTRIBUTORS
+** "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
+** THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
+** PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS
+** BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+** CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+** SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
+** HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
+** LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
+** OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+**
+**
+**~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~*/
+
+#include <mpi.h>
+#include <StGermain/StGermain.h>
+#include <StG_FEM/StG_FEM.h>
+#include <PICellerator/PICellerator.h>
+#include <Underworld/Underworld.h>
+#include <StG_FEM/FrequentOutput/FrequentOutput.h>
+
+#include "Shfl.h"
+
+const Type Underworld_Shfl_Type = "Underworld_Shfl";
+
+void _Underworld_Shfl_Construct( void* component, Stg_ComponentFactory* cf ) {
+ UnderworldContext* context;
+
+ context = Stg_ComponentFactory_ConstructByName( cf, "context", UnderworldContext, True );
+
+ /* Add functions to entry points */
+ Underworld_Shfl_Setup( context );
+ ContextEP_Append( context, AbstractContext_EP_FrequentOutput, Underworld_Shfl_Output );
+}
+
+void* _Underworld_Shfl_DefaultNew( Name name ) {
+ return _Codelet_New(
+ sizeof(Underworld_Shfl),
+ Underworld_Shfl_Type,
+ _Codelet_Delete,
+ _Codelet_Print,
+ _Codelet_Copy,
+ _Underworld_Shfl_DefaultNew,
+ _Underworld_Shfl_Construct,
+ _Codelet_Build,
+ _Codelet_Initialise,
+ _Codelet_Execute,
+ _Codelet_Destroy,
+ name );
+}
+
+Index Underworld_Shfl_Register( PluginsManager* pluginsManager ) {
+ return PluginsManager_Submit( pluginsManager, Underworld_Shfl_Type, "0", _Underworld_Shfl_DefaultNew );
+}
+
+
+void Underworld_Shfl_Setup( UnderworldContext* context ) {
+ FieldVariable_Register* fV_Register = context->fieldVariable_Register;
+ FieldVariable* temperatureGradientsField;
+ FieldVariable* velocityField;
+ FieldVariable* temperatureField;
+ OperatorFeVariable* advectiveHeatFluxField;
+ OperatorFeVariable* temperatureTotalDerivField;
+
+
+ Underworld_Shfl* self;
+
+ self = (Underworld_Shfl*)LiveComponentRegister_Get(
+ context->CF->LCRegister,
+ Underworld_Shfl_Type );
+
+ StG_FEM_FrequentOutput_PrintString( context, "Shfl" );
+
+ Journal_Firewall(
+ context->gaussSwarm != NULL,
+ Underworld_Error,
+ "Cannot find gauss swarm. Cannot use %s.\n", CURR_MODULE_NAME );
+
+ // Create Some FeVariables to calculate shear heat flux
+ temperatureField = FieldVariable_Register_GetByName( fV_Register, "TemperatureField" );
+ velocityField = FieldVariable_Register_GetByName( fV_Register, "VelocityField" );
+ temperatureGradientsField = FieldVariable_Register_GetByName( fV_Register, "TemperatureGradientsField" );
+
+ // get uT
+ advectiveHeatFluxField = OperatorFeVariable_NewBinary(
+ "AdvectiveHeatFluxField",
+ temperatureField,
+ velocityField,
+ "VectorScale" );
+ // get dTdz - uT
+ temperatureTotalDerivField = OperatorFeVariable_NewBinary(
+ "TemperatureTotalDerivField",
+ advectiveHeatFluxField,
+ temperatureGradientsField,
+ "Addition" );
+
+ self->dTField = (FeVariable*) OperatorFeVariable_NewUnary(
+ "dTfieldz",
+ temperatureGradientsField,
+ "TakeSecondComponent" );
+ self->dTField->feMesh = ((FeVariable*)velocityField)->feMesh;
+
+}
+
+void Underworld_Shfl_Output( UnderworldContext* context ) {
+
+ Underworld_Shfl* self;
+ FieldVariable_Register* fV_Register = context->fieldVariable_Register;
+ FieldVariable* temperatureField;
+ double temp;
+
+ temperatureField = FieldVariable_Register_GetByName( fV_Register, "TemperatureField" );
+
+ self = (Underworld_Shfl*)LiveComponentRegister_Get(
+ context->CF->LCRegister,
+ Underworld_Shfl_Type );
+
+ // get_layer value
+ self->shfl = FeVariable_AveragePlane( self->dTField, J_AXIS, 1.0 );
+ temp = FeVariable_AveragePlane( temperatureField, J_AXIS, 0.0 );
+
+
+ self->shfl/=temp;
+
+ StG_FEM_FrequentOutput_PrintValue( context, -self->shfl );
+}
Added: long/3D/Gale/trunk/src/Underworld/plugins/Output/Shfl/Shfl.h
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/Output/Shfl/Shfl.h 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/Output/Shfl/Shfl.h 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,47 @@
+/*~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+** Copyright (c) 2005, Monash Cluster Computing
+** All rights reserved.
+** Redistribution and use in source and binary forms, with or without modification,
+** are permitted provided that the following conditions are met:
+**
+** * Redistributions of source code must retain the above copyright notice,
+** this list of conditions and the following disclaimer.
+** * Redistributions in binary form must reproduce the above copyright
+** notice, this list of conditions and the following disclaimer in the
+** documentation and/or other materials provided with the distribution.
+** * Neither the name of the Monash University nor the names of its contributors
+** may be used to endorse or promote products derived from this software
+** without specific prior written permission.
+**
+** THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+** "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
+** THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
+** PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS
+** BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+** CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+** SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
+** HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
+** LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
+** OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+**
+**
+**
+**~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~*/
+
+
+#ifndef __UnderworldRheology_Nusselt_h__
+#define __UnderworldRheology_Nusselt_h__
+
+ extern const Type Underworld_Shfl_Type;
+ typedef struct {
+ __Codelet
+ FeVariable* temperatureVertDerivField;
+ FeVariable* dTField;
+ double shfl;
+ } Underworld_Shfl;
+
+ Index Underworld_Shfl_Register( PluginsManager* pluginsManager );
+ void Underworld_Shfl_Setup( UnderworldContext* context ) ;
+ void Underworld_Shfl_Output( UnderworldContext* context ) ;
+
+#endif
Added: long/3D/Gale/trunk/src/Underworld/plugins/Output/Shfl/makefile
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/Output/Shfl/makefile 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/plugins/Output/Shfl/makefile 2006-06-28 10:06:01 UTC (rev 3900)
@@ -0,0 +1,24 @@
+
+#Finds the Absolute path to the Project Root directory
+SHELL := /bin/bash
+PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
+include ${PROJ_ROOT}/Makefile.system
+
+# Subdirectories
+subdirs := $(shell find * -type d -prune ! -name .svn )
+
+# Source Code and Header files
+SRCS := $(wildcard *.c)
+HDRS := $(wildcard *.h)
+
+# What to call the plugin
+modName := $(shell basename `pwd`)
+mod = ${PROJECT}_${modName}
+
+# Where to put header files
+includes = ${PROJECT}/${modName}
+
+# External Libraries and Headers
+packages = PICELLERATOR STG_FEM STGERMAIN PETSC MPI XML PYTHON
+
+include ${PROJ_ROOT}/Makefile.vmake
Modified: long/3D/Gale/trunk/src/Underworld/src/main.c
===================================================================
--- long/3D/Gale/trunk/src/Underworld/src/main.c 2006-06-28 10:01:38 UTC (rev 3899)
+++ long/3D/Gale/trunk/src/Underworld/src/main.c 2006-06-28 10:06:01 UTC (rev 3900)
@@ -103,6 +103,10 @@
context->CF = Stg_ComponentFactory_New( dictionary, componentDict, context->register_Register );
+ /*check components dictionary for double entries */
+ char* errMessage = "Component dictionary must have unique names\n";
+ CheckDictionaryKeys(componentDict, errMessage);
+
LiveComponentRegister_Add( context->CF->LCRegister, (Stg_Component*) context );
PluginsManager_Load( context->plugins, context, dictionary );
@@ -121,17 +125,18 @@
}
/* Building phase ---------------------------------------------------------------------------------------------------*/
- KeyCall( context, context->buildK, EntryPoint_VoidPtr_CallCast* )( KeyHandle(context,context->buildK), context );
+ //KeyCall( context, context->buildK, EntryPoint_VoidPtr_CallCast* )( KeyHandle(context,context->buildK), context );
+ Stg_Component_Build( context, 0 /* dummy */, False );
/* Initialisaton phase ----------------------------------------------------------------------------------------------*/
- Context_Initialise( context );
+ Stg_Component_Initialise( context, 0 /* dummy */, False );
/* Run (Solve) phase ------------------------------------------------------------------------------------------------*/
AbstractContext_Dump( context );
Context_Run( context );
/* Destruct phase ---------------------------------------------------------------------------------------------------*/
-
+ Stg_Component_Destroy( context, 0 /* dummy */, False );
Stg_Class_Delete( context );
Stg_Class_Delete( dictionary );
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