[cig-commits] r3908 - in long/3D/Gale/trunk/src/Underworld: .
InputFiles InputFiles/BaseApps InputFiles/Underworld_Components
InputFiles/VariableConditions InputFiles/Viewports
InputFiles/tests InputFiles/tests/checkpoint
InputFiles/tests/expected
InputFiles/tests/expected/testExtensionDP.0of1
InputFiles/tests/expected/testExtensionMC.0of1
InputFiles/tests/expected/testRayleighTaylor2D-checkpoint.0of1
InputFiles/tests/expected/testThermoChemBenchmark.0of1
Rheology/tests Rheology/tests/NonNewtonianShearSolution
Rheology/tests/expected Utils/src
plugins/MaterialThermalDiffusivity src
walter at geodynamics.org
walter at geodynamics.org
Fri Jun 30 16:42:35 PDT 2006
Author: walter
Date: 2006-06-30 16:42:28 -0700 (Fri, 30 Jun 2006)
New Revision: 3908
Added:
long/3D/Gale/trunk/src/Underworld/InputFiles/BaseApps/REP_Setup.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/VariableConditions/temperatureBCs.periodicSideWalls.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/VariableConditions/velocityBCs.freeslip.periodicSideWalls.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/REP_VP.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/PressureField.00015.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/StrainRateField.00015.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/StrainRateInvariantField.00015.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/VelocityField.00015.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/VelocityGradientsField.00015.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/VelocityMagnitudeField.00015.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/VelocitySquaredField.00015.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/VorticityField.00015.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/gaussMaterialSwarm.00015.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/materialSwarm.00015.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/timeInfo.00015.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1.StG_FEM_CompareFeVariableAgainstReferenceSolution.dat.expected
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/PressureField-Reference.00001.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/PressureField-Reference.00002.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/PressureField-Reference.00003.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/PressureField-Reference.00004.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/PressureField-Reference.00005.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/VelocityField-Reference.00001.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/VelocityField-Reference.00002.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/VelocityField-Reference.00003.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/VelocityField-Reference.00004.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/VelocityField-Reference.00005.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1.StG_FEM_CompareFeVariableAgainstReferenceSolution.dat.expected
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/PressureField-Reference.00001.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/PressureField-Reference.00002.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/PressureField-Reference.00003.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/PressureField-Reference.00004.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/PressureField-Reference.00005.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/VelocityField-Reference.00001.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/VelocityField-Reference.00002.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/VelocityField-Reference.00003.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/VelocityField-Reference.00004.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/VelocityField-Reference.00005.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D-checkpoint.0of1.StG_FEM_CompareFeVariableAgainstReferenceSolution.dat.expected
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D-checkpoint.0of1/
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D-checkpoint.0of1/PressureField-Reference.00020.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D-checkpoint.0of1/VelocityField-Reference.00020.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testThermoChemBenchmark.0of1.StG_FEM_CompareFeVariableAgainstReferenceSolution.dat.expected
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testThermoChemBenchmark.0of1/
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testThermoChemBenchmark.0of1/PressureField-Reference.00005.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testThermoChemBenchmark.0of1/VelocityField-Reference.00005.dat
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionDP.0of1.sh
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionDP.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionMC.0of1.sh
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionMC.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testRayleighTaylor2D-checkpoint.0of1.sh
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testThermoChemBenchmark.0of1.sh
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testThermoChemBenchmark.xml
long/3D/Gale/trunk/src/Underworld/Rheology/tests/NonNewtonianShearSolution/
long/3D/Gale/trunk/src/Underworld/Rheology/tests/NonNewtonianShearSolution/NonNewtonianShearSolution.c
long/3D/Gale/trunk/src/Underworld/Rheology/tests/NonNewtonianShearSolution/makefile
long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN3.0of1.StrainRateField-ErrorFile.expected
long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN3.0of1.StressField-ErrorFile.expected
long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN3.0of1.VelocityField-ErrorFile.expected
long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN3.0of1.ViscosityField-ErrorFile.expected
long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN4.0of1.StrainRateField-ErrorFile.expected
long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN4.0of1.StressField-ErrorFile.expected
long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN4.0of1.VelocityField-ErrorFile.expected
long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN4.0of1.ViscosityField-ErrorFile.expected
long/3D/Gale/trunk/src/Underworld/Rheology/tests/testNonNewtonianShear.xml
long/3D/Gale/trunk/src/Underworld/Rheology/tests/testNonNewtonianShearN3.0of1.sh
long/3D/Gale/trunk/src/Underworld/Rheology/tests/testNonNewtonianShearN4.0of1.sh
long/3D/Gale/trunk/src/Underworld/Utils/src/StressField.c
long/3D/Gale/trunk/src/Underworld/Utils/src/StressField.h
long/3D/Gale/trunk/src/Underworld/Utils/src/StressField.meta
long/3D/Gale/trunk/src/Underworld/Utils/src/ViscosityField.c
long/3D/Gale/trunk/src/Underworld/Utils/src/ViscosityField.h
long/3D/Gale/trunk/src/Underworld/Utils/src/ViscosityField.meta
Removed:
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.PressureField.00001.dat.expected
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.StrainRateInvariantField.00001.dat.expected
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.VelocityField.00001.dat.expected
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.VelocityGradientsField.00001.dat.expected
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.VelocityMagnitudeField.00001.dat.expected
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.VelocitySquaredField.00001.dat.expected
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.VorticityField.00001.dat.expected
Modified:
long/3D/Gale/trunk/src/Underworld/
long/3D/Gale/trunk/src/Underworld/InputFiles/BaseApps/RayleighTaylor.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/BaseApps/ThermoChem.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/Extension.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/ExtensionDP.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/ExtensionMC.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/ExtensionMC3D.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/RayleighTaylorBenchmark.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/SlabSubduction.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/StokesFlowBiCGUzawaPIC.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/StokesFlowUzawaPIC.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/StressField2D.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/StressField3D.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/ViscosityField.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/VariableConditions/velocityBCs.shear2D.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/VariableConditions/velocityBCs.shear3D.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/makefile
long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testRayleighTaylorBenchmark.xml
long/3D/Gale/trunk/src/Underworld/Rheology/tests/testDirector.xml
long/3D/Gale/trunk/src/Underworld/Utils/src/Context.c
long/3D/Gale/trunk/src/Underworld/Utils/src/Context.h
long/3D/Gale/trunk/src/Underworld/Utils/src/Init.c
long/3D/Gale/trunk/src/Underworld/Utils/src/Utils.h
long/3D/Gale/trunk/src/Underworld/Utils/src/types.h
long/3D/Gale/trunk/src/Underworld/plugins/MaterialThermalDiffusivity/MaterialThermalDiffusivity.c
long/3D/Gale/trunk/src/Underworld/src/main.c
Log:
Update to latest from Monash
Property changes on: long/3D/Gale/trunk/src/Underworld
___________________________________________________________________
Name: svk:merge
- 9570c393-cf10-0410-b476-9a651db1e55a:/cig:267
c24a034b-ab11-0410-afe6-cfe714e2959e:/trunk:221
+ 9570c393-cf10-0410-b476-9a651db1e55a:/cig:288
c24a034b-ab11-0410-afe6-cfe714e2959e:/trunk:232
Added: long/3D/Gale/trunk/src/Underworld/InputFiles/BaseApps/REP_Setup.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/BaseApps/REP_Setup.xml 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/BaseApps/REP_Setup.xml 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,49 @@
+<?xml version="1.0"?>
+<!DOCTYPE StGermainData SYSTEM "stgermain.dtd">
+
+<StGermainData xmlns="http://www.vpac.org/StGermain/XML_IO_Handler/Jun2003">
+<struct name="components" mergeType="merge">
+ <struct name="stress">
+ <param name="Type">Variable</param>
+ <param name="Rank">Vector</param>
+ <param name="Dependency">decomp-linear</param>
+ <param name="DataType">Double</param>
+ <param name="Count">decomp-linear-nodeDomainCount</param>
+ <param name="VectorComponentCount">6</param>
+ <list name="names">
+ <param>Stressxx</param>
+ <param>Stressyy</param>
+ <param>Stressxy</param>
+ <param>Stresszz</param>
+ <param>Stressxz</param>
+ <param>Stressyz</param>
+ </list>
+
+ </struct>
+ <struct name="stressDofLayout">
+ <param name="Type">DofLayout</param>
+ <param name="Count">decomp-linear-nodeDomainCount</param>
+ <param name="BaseVariableCount">6</param>
+ <list name="BaseVariables">
+ <param>Stressxx</param>
+ <param>Stressyy</param>
+ <param>Stressxy</param>
+ <param>Stresszz</param>
+ <param>Stressxz</param>
+ <param>Stressyz</param>
+ </list>
+ </struct>
+
+ <struct name="recoveredStress">
+ <param name="Type">FeVariable</param>
+ <param name="FEMesh">mesh-linear</param>
+ <param name="DofLayout">stressDofLayout</param>
+ </struct>
+
+ <struct name="recoveredStressInvariantField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">SymmetricTensor_Invariant</param>
+ <param name="FeVariable">recoveredStress</param>
+ </struct>
+</struct>
+</StGermainData>
Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/BaseApps/RayleighTaylor.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/BaseApps/RayleighTaylor.xml 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/BaseApps/RayleighTaylor.xml 2006-06-30 23:42:28 UTC (rev 3908)
@@ -10,7 +10,7 @@
<param name="Type">BuoyancyForceTerm</param>
<param name="ForceVector">mom_force</param>
<param name="TemperatureField">TemperatureField</param>
- <param name="Swarm">materialPoints</param>
+ <param name="Swarm">picIntegrationPoints</param>
<param name="gravity">gravity</param>
</struct>
</struct>
Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/BaseApps/ThermoChem.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/BaseApps/ThermoChem.xml 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/BaseApps/ThermoChem.xml 2006-06-30 23:42:28 UTC (rev 3908)
@@ -26,7 +26,7 @@
<param name="Type">BuoyancyForceTerm</param>
<param name="ForceVector">mom_force</param>
<param name="TemperatureField">TemperatureField</param>
- <param name="Swarm">materialPoints</param>
+ <param name="Swarm">picIntegrationPoints</param>
<param name="gravity">gravity</param>
</struct>
</struct>
Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/Extension.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/Extension.xml 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/Extension.xml 2006-06-30 23:42:28 UTC (rev 3908)
@@ -48,7 +48,7 @@
<param name="Type">Compressible</param>
<param name="GeometryMesh">mesh-linear</param>
<param name="StiffnessMatrix">c_matrix</param>
- <param name="Swarm">materialPoints</param>
+ <param name="Swarm">picIntegrationPoints</param>
<param name="oneOnLambda">10.0</param>
</struct>
<struct name="background">
Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/ExtensionDP.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/ExtensionDP.xml 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/ExtensionDP.xml 2006-06-30 23:42:28 UTC (rev 3908)
@@ -36,7 +36,7 @@
<param name="Type">BuoyancyForceTerm</param>
<param name="ForceVector">mom_force</param>
<param name="TemperatureField">TemperatureField</param>
- <param name="Swarm">materialPoints</param>
+ <param name="Swarm">picIntegrationPoints</param>
<param name="gravity">gravity</param>
</struct>
@@ -80,7 +80,7 @@
<param name="Type">Compressible</param>
<param name="GeometryMesh">mesh-linear</param>
<param name="StiffnessMatrix">c_matrix</param>
- <param name="Swarm">materialPoints</param>
+ <param name="Swarm">picIntegrationPoints</param>
<param name="oneOnLambda">10.0</param>
</struct>
Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/ExtensionMC.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/ExtensionMC.xml 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/ExtensionMC.xml 2006-06-30 23:42:28 UTC (rev 3908)
@@ -97,7 +97,7 @@
<param name="Type">Compressible</param>
<param name="GeometryMesh">mesh-linear</param>
<param name="StiffnessMatrix">c_matrix</param>
- <param name="Swarm">materialPoints</param>
+ <param name="Swarm">picIntegrationPoints</param>
<param name="oneOnLambda">10.0</param>
</struct>
Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/ExtensionMC3D.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/ExtensionMC3D.xml 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/ExtensionMC3D.xml 2006-06-30 23:42:28 UTC (rev 3908)
@@ -80,7 +80,7 @@
<param name="Type">Compressible</param>
<param name="GeometryMesh">mesh-linear</param>
<param name="StiffnessMatrix">c_matrix</param>
- <param name="Swarm">materialPoints</param>
+ <param name="Swarm">picIntegrationPoints</param>
<param name="oneOnLambda">10.0</param>
</struct>
<struct name="background">
@@ -162,7 +162,7 @@
<!-- Mantle Field Stuff -->
<struct name="MantleField">
<param name="Type">MaterialFeVariable</param>
- <param name="Swarm">materialPoints</param>
+ <param name="Swarm">picIntegrationPoints</param>
<param name="Material">mantle</param>
<param name="Context">context</param>
<param name="Mesh">mesh-linear</param>
@@ -171,7 +171,7 @@
<!-- Compressible Field Stuff -->
<struct name="CompressibleField">
<param name="Type">MaterialFeVariable</param>
- <param name="Swarm">materialPoints</param>
+ <param name="Swarm">picIntegrationPoints</param>
<param name="Material">background</param>
<param name="Context">context</param>
<param name="Mesh">mesh-linear</param>
Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/RayleighTaylorBenchmark.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/RayleighTaylorBenchmark.xml 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/RayleighTaylorBenchmark.xml 2006-06-30 23:42:28 UTC (rev 3908)
@@ -50,7 +50,7 @@
<param name="Swarm">materialSwarm</param>
<param name="newFileEachTime">false</param>
</struct>
- <struct name="materialPointsParticleLayout" mergeType="replace">
+ <struct name="picIntegrationPointsParticleLayout" mergeType="replace">
<param name="Type">FileParticleLayout</param>
<param name="filename">./output/materialSwarm.dat</param>
</struct>
Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/SlabSubduction.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/SlabSubduction.xml 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/SlabSubduction.xml 2006-06-30 23:42:28 UTC (rev 3908)
@@ -102,7 +102,7 @@
<!-- Slab Field Stuff -->
<struct name="SlabField">
<param name="Type">MaterialFeVariable</param>
- <param name="Swarm">materialPoints</param>
+ <param name="Swarm">picIntegrationPoints</param>
<param name="Material">Slab</param>
<param name="Context">context</param>
<param name="Mesh">mesh-linear</param>
@@ -111,7 +111,7 @@
<!-- Lower Mantle Field Stuff -->
<struct name="LowerMantleField">
<param name="Type">MaterialFeVariable</param>
- <param name="Swarm">materialPoints</param>
+ <param name="Swarm">picIntegrationPoints</param>
<param name="Material">LowerMantle</param>
<param name="Context">context</param>
<param name="Mesh">mesh-linear</param>
Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/StokesFlowBiCGUzawaPIC.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/StokesFlowBiCGUzawaPIC.xml 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/StokesFlowBiCGUzawaPIC.xml 2006-06-30 23:42:28 UTC (rev 3908)
@@ -10,12 +10,12 @@
<struct name="components" mergeType="merge">
<struct name="constitutiveMatrix" mergeType="replace">
<param name="Type">ConstitutiveMatrixCartesian</param>
- <param name="Swarm">materialPoints</param>
+ <param name="Swarm">picIntegrationPoints</param>
<param name="StiffnessMatrix">k_matrix</param>
</struct>
<struct name="preconditionerTerm" mergeType="replace">
<param name="Type">UzawaPreconditionerTerm</param>
- <param name="Swarm">materialPoints</param>
+ <param name="Swarm">picIntegrationPoints</param>
<param name="StiffnessMatrix">preconditioner</param>
</struct>
</struct>
Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/StokesFlowUzawaPIC.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/StokesFlowUzawaPIC.xml 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/StokesFlowUzawaPIC.xml 2006-06-30 23:42:28 UTC (rev 3908)
@@ -10,12 +10,12 @@
<struct name="components" mergeType="merge">
<struct name="constitutiveMatrix" mergeType="replace">
<param name="Type">ConstitutiveMatrixCartesian</param>
- <param name="Swarm">materialPoints</param>
+ <param name="Swarm">picIntegrationPoints</param>
<param name="StiffnessMatrix">k_matrix</param>
</struct>
<struct name="preconditionerTerm" mergeType="replace">
<param name="Type">UzawaPreconditionerTerm</param>
- <param name="Swarm">materialPoints</param>
+ <param name="Swarm">picIntegrationPoints</param>
<param name="StiffnessMatrix">preconditioner</param>
</struct>
</struct>
Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/StressField2D.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/StressField2D.xml 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/StressField2D.xml 2006-06-30 23:42:28 UTC (rev 3908)
@@ -4,7 +4,7 @@
<param name="Type">StressField</param>
<param name="StrainRateField">StrainRateField</param>
<param name="Context">context</param>
- <param name="Swarm">materialPoints</param>
+ <param name="Swarm">picIntegrationPoints</param>
<param name="Mesh">mesh-linear</param>
<param name="ConstitutiveMatrix">constitutiveMatrix</param>
<param name="StressVariable">materialSwarm-Stress</param>
Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/StressField3D.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/StressField3D.xml 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/StressField3D.xml 2006-06-30 23:42:28 UTC (rev 3908)
@@ -5,7 +5,7 @@
<param name="StrainRateField">StrainRateField</param>
<param name="Context">context</param>
<param name="ConstitutiveMatrix">constitutiveMatrix</param>
- <param name="Swarm">materialPoints</param>
+ <param name="Swarm">picIntegrationPoints</param>
<param name="Mesh">mesh-linear</param>
</struct>
<struct name="StressInvariantField">
Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/ViscosityField.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/ViscosityField.xml 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/Underworld_Components/ViscosityField.xml 2006-06-30 23:42:28 UTC (rev 3908)
@@ -2,9 +2,9 @@
<struct name="components" mergeType="merge">
<struct name="ViscosityField">
<param name="Type">ViscosityField</param>
- <param name="Swarm">gaussSwarm</param>
+ <param name="Context">context</param>
+ <param name="Swarm">picIntegrationPoints</param>
<param name="Mesh">mesh-linear</param>
- <param name="Context">context</param>
<param name="ConstitutiveMatrix">constitutiveMatrix</param>
</struct>
</struct>
Added: long/3D/Gale/trunk/src/Underworld/InputFiles/VariableConditions/temperatureBCs.periodicSideWalls.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/VariableConditions/temperatureBCs.periodicSideWalls.xml 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/VariableConditions/temperatureBCs.periodicSideWalls.xml 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,26 @@
+<?xml version="1.0"?>
+<!DOCTYPE StGermainData SYSTEM "stgermain.dtd">
+<!-- A StGermain input file -->
+<!-- DTD to validate against -->
+<StGermainData xmlns="http://www.vpac.org/StGermain/XML_IO_Handler/Jun2003">
+
+ <include>temperatureBCs.xml</include>
+
+ <!-- Periodic boundary conditions for temperature -->
+ <struct name="components" mergeType="merge">
+ <struct name="temperatureLinkedDofs">
+ <param name="Type">LinkedDofInfo</param>
+ <param name="Mesh">mesh-linear</param>
+ <param name="DofLayout">temperatureDofLayout</param>
+
+ <list name="linkSpecifications">
+ <struct>
+ <param name="wallPair">left-right</param>
+ <param name="dof">0</param>
+ </struct>
+ </list>
+ </struct>
+ </struct>
+ <param name="isPeriodicI"> t </param>
+
+</StGermainData>
Added: long/3D/Gale/trunk/src/Underworld/InputFiles/VariableConditions/velocityBCs.freeslip.periodicSideWalls.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/VariableConditions/velocityBCs.freeslip.periodicSideWalls.xml 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/VariableConditions/velocityBCs.freeslip.periodicSideWalls.xml 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,82 @@
+<?xml version="1.0"?>
+<!DOCTYPE StGermainData SYSTEM "stgermain.dtd">
+<!-- A StGermain input file -->
+<!-- DTD to validate against -->
+<StGermainData xmlns="http://www.vpac.org/StGermain/XML_IO_Handler/Jun2003">
+
+ <!-- Velocity BCs -->
+ <struct name="velocityBCs" mergeType="replace">
+ <param name="type">CompositeVC</param>
+ <list name="vcList">
+ <struct>
+ <param name="type"> WallVC </param>
+ <param name="wall"> bottom </param>
+ <list name="variables">
+ <struct>
+ <param name="name">vy</param>
+ <param name="type">double</param>
+ <param name="value"> 0 </param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type"> WallVC </param>
+ <param name="wall"> front </param>
+ <list name="variables">
+ <struct>
+ <param name="name">vz</param>
+ <param name="type">double</param>
+ <param name="value"> 0 </param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type"> WallVC </param>
+ <param name="wall"> back </param>
+ <list name="variables">
+ <struct>
+ <param name="name">vz</param>
+ <param name="type">double</param>
+ <param name="value"> 0 </param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type"> WallVC </param>
+ <param name="wall"> top </param>
+ <list name="variables">
+ <struct>
+ <param name="name">vy</param>
+ <param name="type">double</param>
+ <param name="value"> 0 </param>
+ </struct>
+ </list>
+ </struct>
+ </list>
+ </struct>
+
+ <!-- Periodic boundary conditions -->
+ <struct name="components" mergeType="merge">
+ <struct name="velocityLinkedDofs">
+ <param name="Type">LinkedDofInfo</param>
+ <param name="Mesh">mesh-linear</param>
+ <param name="DofLayout">velocityDofLayout</param>
+
+ <list name="linkSpecifications">
+ <struct>
+ <param name="wallPair">left-right</param>
+ <param name="dof">0</param>
+ </struct>
+ <struct>
+ <param name="wallPair">left-right</param>
+ <param name="dof">1</param>
+ </struct>
+ <struct>
+ <param name="wallPair">left-right</param>
+ <param name="dof">2</param>
+ </struct>
+ </list>
+ </struct>
+ </struct>
+ <param name="isPeriodicI"> t </param>
+</StGermainData>
Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/VariableConditions/velocityBCs.shear2D.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/VariableConditions/velocityBCs.shear2D.xml 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/VariableConditions/velocityBCs.shear2D.xml 2006-06-30 23:42:28 UTC (rev 3908)
@@ -91,7 +91,7 @@
<struct name="periodicBCsManager">
<param name="Type">PeriodicBoundariesManager</param>
<param name="Geometry">geometry</param>
- <param name="Swarm">materialPoints</param>
+ <param name="Swarm">picIntegrationPoints</param>
<param name="TimeIntegrator">timeIntegrator</param>
<list name="PeriodicBoundaries">
<param>I_AXIS</param>
Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/VariableConditions/velocityBCs.shear3D.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/VariableConditions/velocityBCs.shear3D.xml 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/VariableConditions/velocityBCs.shear3D.xml 2006-06-30 23:42:28 UTC (rev 3908)
@@ -101,7 +101,7 @@
<struct name="periodicBCsManager">
<param name="Type">PeriodicBoundariesManager</param>
<param name="Geometry">geometry</param>
- <param name="Swarm">materialPoints</param>
+ <param name="Swarm">picIntegrationPoints</param>
<param name="TimeIntegrator">timeIntegrator</param>
<list name="PeriodicBoundaries">
<param>I_AXIS</param>
Added: long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/REP_VP.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/REP_VP.xml 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/Viewports/REP_VP.xml 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,35 @@
+<?xml version="1.0"?>
+<!DOCTYPE StGermainData SYSTEM "stgermain.dtd">
+
+<StGermainData xmlns="http://www.vpac.org/StGermain/XML_IO_Handler/Jun2003">
+
+<struct name="components" mergeType="merge">
+
+ <struct name="recstressInvColourMap">
+ <param name="Type">lucColourMap</param>
+ <param name="colours">Purple Blue Green Yellow Orange Red</param>
+ <param name="dynamicRange">true</param>
+ </struct>
+ <struct name="recoveredStressInvMap">
+ <param name="Type">lucScalarField</param>
+ <param name="FieldVariable">recoveredStressInvariantField</param>
+ <param name="ColourMap">recstressInvColourMap</param>
+ </struct>
+
+ <struct name="recstressInvColourBar">
+ <param name="Type">lucColourBar</param>
+ <param name="ColourMap">recstressInvColourMap</param>
+ </struct>
+
+ <struct name="recoveredStressInvariantVP">
+ <param name="Type">lucViewport</param>
+ <param name="Camera">camera</param>
+ <list name="DrawingObject">
+ <param>recoveredStressInvMap</param>
+ <param>border</param>
+ <param>recstressInvColourBar</param>
+ </list>
+ </struct>
+</struct>
+
+</StGermainData>
Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/PressureField.00015.dat
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/PressureField.00015.dat 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/PressureField.00015.dat 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,1024 @@
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Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/StrainRateField.00015.dat
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/StrainRateField.00015.dat 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/StrainRateField.00015.dat 2006-06-30 23:42:28 UTC (rev 3908)
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Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/StrainRateInvariantField.00015.dat
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/StrainRateInvariantField.00015.dat 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/StrainRateInvariantField.00015.dat 2006-06-30 23:42:28 UTC (rev 3908)
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===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/VelocityField.00015.dat 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/VelocityField.00015.dat 2006-06-30 23:42:28 UTC (rev 3908)
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===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/VelocityGradientsField.00015.dat 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/VelocityGradientsField.00015.dat 2006-06-30 23:42:28 UTC (rev 3908)
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Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/VelocityMagnitudeField.00015.dat
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/VelocityMagnitudeField.00015.dat 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/VelocityMagnitudeField.00015.dat 2006-06-30 23:42:28 UTC (rev 3908)
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===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/VelocitySquaredField.00015.dat 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/VelocitySquaredField.00015.dat 2006-06-30 23:42:28 UTC (rev 3908)
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===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/VorticityField.00015.dat 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/checkpoint/VorticityField.00015.dat 2006-06-30 23:42:28 UTC (rev 3908)
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Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/PressureField-Reference.00002.dat
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/PressureField-Reference.00002.dat 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/PressureField-Reference.00002.dat 2006-06-30 23:42:28 UTC (rev 3908)
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Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/PressureField-Reference.00003.dat
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/PressureField-Reference.00003.dat 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/PressureField-Reference.00003.dat 2006-06-30 23:42:28 UTC (rev 3908)
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Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/PressureField-Reference.00004.dat
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/PressureField-Reference.00004.dat 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/PressureField-Reference.00004.dat 2006-06-30 23:42:28 UTC (rev 3908)
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Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/PressureField-Reference.00005.dat
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/PressureField-Reference.00005.dat 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/PressureField-Reference.00005.dat 2006-06-30 23:42:28 UTC (rev 3908)
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Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/VelocityField-Reference.00001.dat
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/VelocityField-Reference.00001.dat 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/VelocityField-Reference.00001.dat 2006-06-30 23:42:28 UTC (rev 3908)
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===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/VelocityField-Reference.00002.dat 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/VelocityField-Reference.00002.dat 2006-06-30 23:42:28 UTC (rev 3908)
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Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/VelocityField-Reference.00003.dat
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/VelocityField-Reference.00003.dat 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/VelocityField-Reference.00003.dat 2006-06-30 23:42:28 UTC (rev 3908)
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Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/VelocityField-Reference.00004.dat
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/VelocityField-Reference.00004.dat 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/VelocityField-Reference.00004.dat 2006-06-30 23:42:28 UTC (rev 3908)
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Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/VelocityField-Reference.00005.dat
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/VelocityField-Reference.00005.dat 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1/VelocityField-Reference.00005.dat 2006-06-30 23:42:28 UTC (rev 3908)
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Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1.StG_FEM_CompareFeVariableAgainstReferenceSolution.dat.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1.StG_FEM_CompareFeVariableAgainstReferenceSolution.dat.expected 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionDP.0of1.StG_FEM_CompareFeVariableAgainstReferenceSolution.dat.expected 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,10 @@
+Timestep 1: Total integrated value of 'PressureField-ErrorMagnitudeField' is within a tolerance 0.005.
+Timestep 1: Total integrated value of 'VelocityField-ErrorMagnitudeField' is within a tolerance 5e-06.
+Timestep 2: Total integrated value of 'PressureField-ErrorMagnitudeField' is within a tolerance 0.005.
+Timestep 2: Total integrated value of 'VelocityField-ErrorMagnitudeField' is within a tolerance 5e-06.
+Timestep 3: Total integrated value of 'PressureField-ErrorMagnitudeField' is within a tolerance 0.005.
+Timestep 3: Total integrated value of 'VelocityField-ErrorMagnitudeField' is within a tolerance 5e-06.
+Timestep 4: Total integrated value of 'PressureField-ErrorMagnitudeField' is within a tolerance 0.005.
+Timestep 4: Total integrated value of 'VelocityField-ErrorMagnitudeField' is within a tolerance 5e-06.
+Timestep 5: Total integrated value of 'PressureField-ErrorMagnitudeField' is within a tolerance 0.005.
+Timestep 5: Total integrated value of 'VelocityField-ErrorMagnitudeField' is within a tolerance 5e-06.
Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/PressureField-Reference.00001.dat
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/PressureField-Reference.00001.dat 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/PressureField-Reference.00001.dat 2006-06-30 23:42:28 UTC (rev 3908)
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Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/PressureField-Reference.00002.dat
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/PressureField-Reference.00002.dat 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/PressureField-Reference.00002.dat 2006-06-30 23:42:28 UTC (rev 3908)
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Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/PressureField-Reference.00003.dat
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/PressureField-Reference.00003.dat 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/PressureField-Reference.00003.dat 2006-06-30 23:42:28 UTC (rev 3908)
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Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/PressureField-Reference.00004.dat
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/PressureField-Reference.00004.dat 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/PressureField-Reference.00004.dat 2006-06-30 23:42:28 UTC (rev 3908)
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Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/PressureField-Reference.00005.dat
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/PressureField-Reference.00005.dat 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/PressureField-Reference.00005.dat 2006-06-30 23:42:28 UTC (rev 3908)
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Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/VelocityField-Reference.00001.dat
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/VelocityField-Reference.00001.dat 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/VelocityField-Reference.00001.dat 2006-06-30 23:42:28 UTC (rev 3908)
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Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/VelocityField-Reference.00002.dat
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/VelocityField-Reference.00002.dat 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/VelocityField-Reference.00002.dat 2006-06-30 23:42:28 UTC (rev 3908)
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Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/VelocityField-Reference.00003.dat
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/VelocityField-Reference.00003.dat 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/VelocityField-Reference.00003.dat 2006-06-30 23:42:28 UTC (rev 3908)
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Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/VelocityField-Reference.00004.dat
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/VelocityField-Reference.00004.dat 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/VelocityField-Reference.00004.dat 2006-06-30 23:42:28 UTC (rev 3908)
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===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/VelocityField-Reference.00005.dat 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1/VelocityField-Reference.00005.dat 2006-06-30 23:42:28 UTC (rev 3908)
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Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1.StG_FEM_CompareFeVariableAgainstReferenceSolution.dat.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1.StG_FEM_CompareFeVariableAgainstReferenceSolution.dat.expected 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testExtensionMC.0of1.StG_FEM_CompareFeVariableAgainstReferenceSolution.dat.expected 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,10 @@
+Timestep 1: Total integrated value of 'PressureField-ErrorMagnitudeField' is within a tolerance 0.005.
+Timestep 1: Total integrated value of 'VelocityField-ErrorMagnitudeField' is within a tolerance 5e-06.
+Timestep 2: Total integrated value of 'PressureField-ErrorMagnitudeField' is within a tolerance 0.005.
+Timestep 2: Total integrated value of 'VelocityField-ErrorMagnitudeField' is within a tolerance 5e-06.
+Timestep 3: Total integrated value of 'PressureField-ErrorMagnitudeField' is within a tolerance 0.005.
+Timestep 3: Total integrated value of 'VelocityField-ErrorMagnitudeField' is within a tolerance 5e-06.
+Timestep 4: Total integrated value of 'PressureField-ErrorMagnitudeField' is within a tolerance 0.005.
+Timestep 4: Total integrated value of 'VelocityField-ErrorMagnitudeField' is within a tolerance 5e-06.
+Timestep 5: Total integrated value of 'PressureField-ErrorMagnitudeField' is within a tolerance 0.005.
+Timestep 5: Total integrated value of 'VelocityField-ErrorMagnitudeField' is within a tolerance 5e-06.
Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D-checkpoint.0of1/PressureField-Reference.00020.dat
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D-checkpoint.0of1/PressureField-Reference.00020.dat 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D-checkpoint.0of1/PressureField-Reference.00020.dat 2006-06-30 23:42:28 UTC (rev 3908)
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Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D-checkpoint.0of1/VelocityField-Reference.00020.dat
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D-checkpoint.0of1/VelocityField-Reference.00020.dat 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D-checkpoint.0of1/VelocityField-Reference.00020.dat 2006-06-30 23:42:28 UTC (rev 3908)
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Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D-checkpoint.0of1.StG_FEM_CompareFeVariableAgainstReferenceSolution.dat.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D-checkpoint.0of1.StG_FEM_CompareFeVariableAgainstReferenceSolution.dat.expected 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D-checkpoint.0of1.StG_FEM_CompareFeVariableAgainstReferenceSolution.dat.expected 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,2 @@
+Timestep 20: Total integrated value of 'PressureField-ErrorMagnitudeField' is within a tolerance 0.005.
+Timestep 20: Total integrated value of 'VelocityField-ErrorMagnitudeField' is within a tolerance 5e-06.
Deleted: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.PressureField.00001.dat.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.PressureField.00001.dat.expected 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.PressureField.00001.dat.expected 2006-06-30 23:42:28 UTC (rev 3908)
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Deleted: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.StrainRateInvariantField.00001.dat.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.StrainRateInvariantField.00001.dat.expected 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.StrainRateInvariantField.00001.dat.expected 2006-06-30 23:42:28 UTC (rev 3908)
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Deleted: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.VelocityField.00001.dat.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.VelocityField.00001.dat.expected 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.VelocityField.00001.dat.expected 2006-06-30 23:42:28 UTC (rev 3908)
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Deleted: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.VelocityGradientsField.00001.dat.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.VelocityGradientsField.00001.dat.expected 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.VelocityGradientsField.00001.dat.expected 2006-06-30 23:42:28 UTC (rev 3908)
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Deleted: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.VelocityMagnitudeField.00001.dat.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.VelocityMagnitudeField.00001.dat.expected 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.VelocityMagnitudeField.00001.dat.expected 2006-06-30 23:42:28 UTC (rev 3908)
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Deleted: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.VelocitySquaredField.00001.dat.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.VelocitySquaredField.00001.dat.expected 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.VelocitySquaredField.00001.dat.expected 2006-06-30 23:42:28 UTC (rev 3908)
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Deleted: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.VorticityField.00001.dat.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.VorticityField.00001.dat.expected 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testRayleighTaylor2D.0of1.VorticityField.00001.dat.expected 2006-06-30 23:42:28 UTC (rev 3908)
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===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testThermoChemBenchmark.0of1/PressureField-Reference.00005.dat 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testThermoChemBenchmark.0of1/PressureField-Reference.00005.dat 2006-06-30 23:42:28 UTC (rev 3908)
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Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testThermoChemBenchmark.0of1/VelocityField-Reference.00005.dat
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testThermoChemBenchmark.0of1/VelocityField-Reference.00005.dat 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testThermoChemBenchmark.0of1/VelocityField-Reference.00005.dat 2006-06-30 23:42:28 UTC (rev 3908)
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+2112 1 1 0 0.00432496 0
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+2115 1.09375 1 0 -0.00827423 0
+2116 1.125 1 0 -0.0122192 0
+2117 1.15625 1 0 -0.0160636 0
+2118 1.1875 1 0 -0.0197546 0
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Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testThermoChemBenchmark.0of1.StG_FEM_CompareFeVariableAgainstReferenceSolution.dat.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testThermoChemBenchmark.0of1.StG_FEM_CompareFeVariableAgainstReferenceSolution.dat.expected 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/expected/testThermoChemBenchmark.0of1.StG_FEM_CompareFeVariableAgainstReferenceSolution.dat.expected 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,2 @@
+Timestep 5: Total integrated value of 'PressureField-ErrorMagnitudeField' is within a tolerance 0.005.
+Timestep 5: Total integrated value of 'VelocityField-ErrorMagnitudeField' is within a tolerance 5e-06.
Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/makefile
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/makefile 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/makefile 2006-06-30 23:42:28 UTC (rev 3908)
@@ -4,8 +4,18 @@
PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
include ${PROJ_ROOT}/Makefile.system
-checks = $(wildcard *.sh)
+checks = \
+ testExtensionDP.0of1.sh \
+ testExtensionMC.0of1.sh \
+ testRayleighTaylor2D.0of1.sh \
+ testRayleighTaylor2D.0of2.sh \
+ testThermoChemBenchmark.0of1.sh
+ifeq (${SYSTEM_64},0)
+ checks += testRayleighTaylor2D-checkpoint.0of1.sh
+endif
+
#subdirs :=
include ${PROJ_ROOT}/Makefile.vmake
+
Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionDP.0of1.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionDP.0of1.sh 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionDP.0of1.sh 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,12 @@
+#!/bin/sh
+
+TEST_SCRIPT=./VMake/executableTester.sh
+until test -r ${TEST_SCRIPT} ; do
+ TEST_SCRIPT=../${TEST_SCRIPT}
+done
+. ${TEST_SCRIPT}
+
+setUpdateModeFromArg ${1}
+
+testname="`basename $0 .sh`"
+runAndHandleSystemTestStdLocations "Underworld testExtensionDP.xml" "$0" "$@"
Property changes on: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionDP.0of1.sh
___________________________________________________________________
Name: svn:executable
+ *
Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionDP.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionDP.xml 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionDP.xml 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,25 @@
+<!-- DTD to validate against -->
+<StGermainData xmlns="http://www.vpac.org/StGermain/XML_IO_Handler/Jun2003">
+
+ <include>../ExtensionDP.xml</include>
+
+ <list name="plugins" mergeType="merge">
+ <param>StG_FEM_CompareFeVariableAgainstReferenceSolution</param>
+ </list>
+
+ <param name="maxTimeSteps">5</param>
+ <param name="interactive">f</param>
+
+ <struct name="StG_FEM_CompareFeVariableAgainstReferenceSolution">
+ <list name="variables">
+ <param>PressureField</param>
+ <param>VelocityField</param>
+ </list>
+ <param name="referencePath">./expected/testExtensionDP.0of1</param>
+ <param name="VelocityField-tolerance">0.000005</param>
+ </struct>
+
+ <param name="elementResI">30</param>
+ <param name="elementResJ">15</param>
+
+</StGermainData>
Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionMC.0of1.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionMC.0of1.sh 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionMC.0of1.sh 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,12 @@
+#!/bin/sh
+
+TEST_SCRIPT=./VMake/executableTester.sh
+until test -r ${TEST_SCRIPT} ; do
+ TEST_SCRIPT=../${TEST_SCRIPT}
+done
+. ${TEST_SCRIPT}
+
+setUpdateModeFromArg ${1}
+
+testname="`basename $0 .sh`"
+runAndHandleSystemTestStdLocations "Underworld testExtensionMC.xml" "$0" "$@"
Property changes on: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionMC.0of1.sh
___________________________________________________________________
Name: svn:executable
+ *
Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionMC.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionMC.xml 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionMC.xml 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,26 @@
+<!-- DTD to validate against -->
+<StGermainData xmlns="http://www.vpac.org/StGermain/XML_IO_Handler/Jun2003">
+
+ <include>../ExtensionMC.xml</include>
+
+ <list name="plugins" mergeType="merge">
+ <param>StG_FEM_CompareFeVariableAgainstReferenceSolution</param>
+ </list>
+
+
+ <param name="maxTimeSteps">5</param>
+ <param name="interactive">f</param>
+
+ <struct name="StG_FEM_CompareFeVariableAgainstReferenceSolution">
+ <list name="variables">
+ <param>PressureField</param>
+ <param>VelocityField</param>
+ </list>
+ <param name="referencePath">./expected/testExtensionMC.0of1</param>
+ <param name="VelocityField-tolerance">0.000005</param>
+ </struct>
+
+ <param name="elementResI">30</param>
+ <param name="elementResJ">15</param>
+
+</StGermainData>
Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testRayleighTaylor2D-checkpoint.0of1.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testRayleighTaylor2D-checkpoint.0of1.sh 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testRayleighTaylor2D-checkpoint.0of1.sh 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,15 @@
+#!/bin/sh
+
+TEST_SCRIPT=./VMake/executableTester.sh
+until test -r ${TEST_SCRIPT} ; do
+ TEST_SCRIPT=../${TEST_SCRIPT}
+done
+. ${TEST_SCRIPT}
+
+setUpdateModeFromArg ${1}
+
+testname="`basename $0 .sh`"
+
+cp checkpoint/* output/
+
+runAndHandleSystemTestStdLocations "Underworld testRayleighTaylorBenchmark.xml --interactive=False --maxTimeSteps=5 --restartTimestep=15 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./expected/testRayleighTaylor2D-checkpoint.0of1 --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=20" "$0" "$@"
Property changes on: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testRayleighTaylor2D-checkpoint.0of1.sh
___________________________________________________________________
Name: svn:executable
+ *
Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testRayleighTaylorBenchmark.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testRayleighTaylorBenchmark.xml 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testRayleighTaylorBenchmark.xml 2006-06-30 23:42:28 UTC (rev 3908)
@@ -51,7 +51,7 @@
<param name="Swarm">materialSwarm</param>
<param name="newFileEachTime">false</param>
</struct>
- <struct name="integrationPointsParticleLayout" mergeType="replace">
+ <struct name="picIntegrationPointsParticleLayout" mergeType="replace">
<param name="Type">FileParticleLayout</param>
<param name="filename">./output/materialSwarm.dat</param>
</struct>
Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testThermoChemBenchmark.0of1.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testThermoChemBenchmark.0of1.sh 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testThermoChemBenchmark.0of1.sh 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,12 @@
+#!/bin/sh
+
+TEST_SCRIPT=./VMake/executableTester.sh
+until test -r ${TEST_SCRIPT} ; do
+ TEST_SCRIPT=../${TEST_SCRIPT}
+done
+. ${TEST_SCRIPT}
+
+setUpdateModeFromArg ${1}
+
+testname="`basename $0 .sh`"
+runAndHandleSystemTestStdLocations "Underworld testThermoChemBenchmark.xml" "$0" "$@"
Property changes on: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testThermoChemBenchmark.0of1.sh
___________________________________________________________________
Name: svn:executable
+ *
Added: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testThermoChemBenchmark.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testThermoChemBenchmark.xml 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testThermoChemBenchmark.xml 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,105 @@
+<?xml version="1.0"?>
+<!DOCTYPE StGermainData SYSTEM "stgermain.dtd">
+
+<StGermainData xmlns="http://www.vpac.org/StGermain/XML_IO_Handler/Jun2003">
+
+ <include>../BaseApps/ThermoChem.xml</include>
+
+ <list name="plugins" mergeType="merge">
+ <!-- Output Plugins -->
+ <param>StG_FEM_FrequentOutput</param>
+ <param>Underworld_Nusselt</param>
+ <param>Underworld_Vrms</param>
+ <param>StG_FEM_CPUTime</param>
+ <param>StG_FEM_CompareFeVariableAgainstReferenceSolution</param>
+ </list>
+
+ <struct name="components" mergeType="merge">
+ <!-- Background Material Stuff -->
+ <struct name="backgroundShape">
+ <param name="Type">Everywhere</param>
+ </struct>
+ <struct name="ambientViscosity">
+ <param name="Type">MaterialViscosity</param>
+ <param name="eta0">1.0</param>
+ </struct>
+ <struct name="ambient">
+ <param name="Type">RheologyMaterial</param>
+ <param name="Shape">backgroundShape</param>
+ <param name="density">0.0</param>
+ <param name="alpha">1.0</param>
+ <param name="Rheology">ambientViscosity</param>
+ </struct>
+
+ <!-- Dense Layer Material Stuff -->
+ <struct name="denseLayerViscosity">
+ <param name="Type">MaterialViscosity</param>
+ <param name="eta0">1.0</param>
+ </struct>
+ <struct name="box">
+ <param name="Type">Box</param>
+ <param name="startX"> minX </param> <param name="endX"> maxX </param>
+ <param name="startY"> minY </param> <param name="endY"> 0.025 </param>
+ </struct>
+ <struct name="denseLayer">
+ <param name="Type">RheologyMaterial</param>
+ <param name="Shape">box</param>
+ <param name="density">1.0</param>
+ <param name="alpha">1.0</param>
+ <param name="Rheology">denseLayerViscosity</param>
+ </struct>
+ </struct>
+
+ <!-- Simulation control -->
+ <param name="maxTimeSteps"> 100000000 </param>
+ <param name="outputPath"> ./output </param>
+ <param name="dumpEvery"> 10 </param>
+
+ <param name="gravity"> 3e5 </param>
+ <param name="courantFactor"> 0.25 </param>
+
+ <!-- Journal Parameters -->
+ <param name="journal.info.Context-verbose">True</param>
+ <param name="journal-level.info.Stg_ComponentFactory">2</param>
+ <param name="journal.debug">f</param>
+ <param name="journal-enable-branch.debug.StG_FEM">f</param>
+ <param name="journal-level-branch.debug.StG_FEM"> 2 </param>
+
+ <!-- Geometry & Mesh setup -->
+ <param name="dim"> 2 </param>
+ <param name="elementResI"> 64 </param>
+ <param name="elementResJ"> 32 </param>
+ <param name="elementResK"> 1 </param>
+ <param name="shadowDepth"> 1 </param>
+ <param name="minX"> 0.0 </param>
+ <param name="minY"> 0.0 </param>
+ <param name="minZ"> 0.0 </param>
+ <param name="maxX"> 2.0 </param>
+ <param name="maxY"> 1.0 </param>
+ <param name="maxZ"> 1.0 </param>
+ <param name="allowUnbalancing"> True </param>
+
+ <!-- Swarm parameters -->
+ <param name="particlesPerCell"> 20 </param>
+
+ <!-- Set up BCs -->
+ <include> ../VariableConditions/temperatureBCs.xml </include>
+ <include> ../VariableConditions/temperatureICs.sinusoid.xml </include>
+ <include> ../VariableConditions/velocityBCs.freeslip.xml </include>
+
+ <param name="maxTimeSteps">5</param>
+ <param name="dumpEvery">5</param>
+ <param name="interactive">f</param>
+
+ <struct name="StG_FEM_CompareFeVariableAgainstReferenceSolution">
+ <list name="variables">
+ <param>PressureField</param>
+ <param>VelocityField</param>
+ </list>
+ <param name="referencePath">./expected/testThermoChemBenchmark.0of1</param>
+ <param name="VelocityField-tolerance">0.000005</param>
+
+ <param name="timeStepToCompare">5</param>
+ </struct>
+
+</StGermainData>
Added: long/3D/Gale/trunk/src/Underworld/Rheology/tests/NonNewtonianShearSolution/NonNewtonianShearSolution.c
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Rheology/tests/NonNewtonianShearSolution/NonNewtonianShearSolution.c 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/Rheology/tests/NonNewtonianShearSolution/NonNewtonianShearSolution.c 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,159 @@
+
+#include <mpi.h>
+#include <StGermain/StGermain.h>
+#include <StG_FEM/StG_FEM.h>
+#include <PICellerator/PICellerator.h>
+#include <Underworld/Rheology/Rheology.h>
+
+#include <assert.h>
+
+typedef struct {
+ __AnalyticSolution
+ MaterialViscosity* materialViscosity;
+ NonNewtonian* nonNewtonianRheology;
+ BlockGeometry* geometry;
+ double velocityTopOfBox;
+} NonNewtonianShearSolution;
+
+const Type NonNewtonianShearSolution_Type = "NonNewtonianShearSolution";
+
+void NonNewtonianShearSolution_VelocityFunction( void* analyticSolution, FeVariable* analyticFeVariable, double* coord, double* velocity ) {
+ NonNewtonianShearSolution* self = (NonNewtonianShearSolution*)analyticSolution;
+ double height;
+
+ /* Get Parameters */
+ height = self->geometry->max[J_AXIS] - self->geometry->min[J_AXIS];
+
+ velocity[ I_AXIS ] = coord[J_AXIS] / height * self->velocityTopOfBox;
+ velocity[ J_AXIS ] = 0.0;
+}
+
+void NonNewtonianShearSolution_StrainRateFunction( void* analyticSolution, FeVariable* analyticFeVariable, double* coord, double* strainRate ) {
+ NonNewtonianShearSolution* self = (NonNewtonianShearSolution*)analyticSolution;
+ double height;
+
+ /* Get Parameters */
+ height = self->geometry->max[J_AXIS] - self->geometry->min[J_AXIS];
+
+ strainRate[ 0 ] = 0.0;
+ strainRate[ 1 ] = 0.0;
+ strainRate[ 2 ] = 0.5 * self->velocityTopOfBox / height;
+}
+
+void NonNewtonianShearSolution_StressFunction( void* analyticSolution, FeVariable* analyticFeVariable, double* coord, double* stress ) {
+ NonNewtonianShearSolution* self = (NonNewtonianShearSolution*)analyticSolution;
+ double eta;
+ double height;
+ double tau;
+ double n;
+
+ /* Get Parameters */
+ eta = self->materialViscosity->eta0;
+ n = self->nonNewtonianRheology->stressExponent;
+ height = self->geometry->max[J_AXIS] - self->geometry->min[J_AXIS];
+
+ /* Calculate stress - without considering cohesion */
+ tau = pow( eta * self->velocityTopOfBox / height, 1/n);
+
+ /* Calculate Analytic Solution for the stress */
+ stress[0] = 0.0;
+ stress[1] = 0.0;
+ stress[2] = tau;
+}
+
+
+void NonNewtonianShearSolution_ViscosityFunction( void* analyticSolution, FeVariable* analyticFeVariable, double* coord, double* viscosity ) {
+ NonNewtonianShearSolution* self = (NonNewtonianShearSolution*)analyticSolution;
+ double eta0;
+ double height;
+ double n;
+
+ /* Get Parameters */
+ eta0 = self->materialViscosity->eta0;
+ n = self->nonNewtonianRheology->stressExponent;
+ height = self->geometry->max[J_AXIS] - self->geometry->min[J_AXIS];
+
+ /* Calculate stress - without considering cohesion */
+ *viscosity = eta0 * pow( eta0 * self->velocityTopOfBox / height, 1/n-1.0);
+}
+
+void NonNewtonianShearSolution_UpdateVelocityBC( NonNewtonianShearSolution* self, FiniteElementContext* context ) {
+ self->velocityTopOfBox += context->dt;
+}
+
+void NonNewtonianShearSolution_VelocityBC( Node_LocalIndex node_lI, Variable_Index var_I, void* _context, void* _result ) {
+ FiniteElementContext * context = (FiniteElementContext*)_context;
+ NonNewtonianShearSolution* self = (NonNewtonianShearSolution*) LiveComponentRegister_Get( context->CF->LCRegister, NonNewtonianShearSolution_Type );
+ double* result = (double*) _result;
+
+ *result = self->velocityTopOfBox;
+}
+
+void _NonNewtonianShearSolution_Construct( void* analyticSolution, Stg_ComponentFactory* cf ) {
+ NonNewtonianShearSolution* self = (NonNewtonianShearSolution*)analyticSolution;
+ FiniteElementContext* context;
+ FeVariable* velocityField;
+ FeVariable* strainRateField;
+ FeVariable* stressField;
+ FeVariable* viscosityField;
+
+ /* Construct parent */
+ _AnalyticSolution_Construct( self, cf );
+ context = Stg_CheckType( self->context, FiniteElementContext );
+
+ ConditionFunction_Register_Add( context->condFunc_Register,
+ ConditionFunction_New( NonNewtonianShearSolution_VelocityBC, "ShearTrigger") );
+
+ /* Create Analytic Velocity Field */
+ velocityField = Stg_ComponentFactory_ConstructByName( cf, "VelocityField", FeVariable, True );
+ AnalyticSolution_CreateAnalyticVectorField( self, velocityField, NonNewtonianShearSolution_VelocityFunction );
+
+ /* Create Analytic Strain Rate Field */
+ strainRateField = Stg_ComponentFactory_ConstructByName( cf, "StrainRateField", FeVariable, True );
+ AnalyticSolution_CreateAnalyticSymmetricTensorField(
+ self, strainRateField, NonNewtonianShearSolution_StrainRateFunction );
+
+ /* Create Analytic Stress Field */
+ stressField = Stg_ComponentFactory_ConstructByName( cf, "StressField", FeVariable, True );
+ AnalyticSolution_CreateAnalyticSymmetricTensorField( self, stressField, NonNewtonianShearSolution_StressFunction );
+
+ /* Create Analytic Viscosity Field */
+ viscosityField = Stg_ComponentFactory_ConstructByName( cf, "ViscosityField", FeVariable, True );
+ AnalyticSolution_CreateAnalyticField( self, viscosityField, NonNewtonianShearSolution_ViscosityFunction );
+
+ self->materialViscosity = Stg_ComponentFactory_ConstructByName( cf, "layerViscosity", MaterialViscosity, True );
+ self->nonNewtonianRheology =
+ Stg_ComponentFactory_ConstructByName( cf, "nonNewtonianRheology", NonNewtonian, True );
+ self->geometry = Stg_ComponentFactory_ConstructByName( cf, "geometry", BlockGeometry, True );
+
+ /* Set Velocity Stuff */
+ EP_AppendClassHook( Context_GetEntryPoint( context, AbstractContext_EP_UpdateClass ),
+ NonNewtonianShearSolution_UpdateVelocityBC, self );
+ self->velocityTopOfBox = Stg_ComponentFactory_GetRootDictDouble( cf, "velocityTopOfBox", 0.5 );
+}
+
+
+/* This function will provide StGermain the abilty to instantiate (create) this codelet on demand. */
+void* _NonNewtonianShearSolution_DefaultNew( Name name ) {
+ return _AnalyticSolution_New(
+ sizeof(NonNewtonianShearSolution),
+ NonNewtonianShearSolution_Type,
+ _AnalyticSolution_Delete,
+ _AnalyticSolution_Print,
+ _AnalyticSolution_Copy,
+ _NonNewtonianShearSolution_DefaultNew,
+ _NonNewtonianShearSolution_Construct,
+ _AnalyticSolution_Build,
+ _AnalyticSolution_Initialise,
+ _AnalyticSolution_Execute,
+ _AnalyticSolution_Destroy,
+ name );
+}
+
+/* This function is automatically run by StGermain when this plugin is loaded. The name must be "<plugin-name>_Register". */
+Index Underworld_NonNewtonianShearSolution_Register( PluginsManager* pluginsManager ) {
+ /* A plugin is only properly registered once it returns the handle provided when submitting a codelet to StGermain. */
+ return PluginsManager_Submit( pluginsManager, NonNewtonianShearSolution_Type, "0",
+ _NonNewtonianShearSolution_DefaultNew );
+}
+
Added: long/3D/Gale/trunk/src/Underworld/Rheology/tests/NonNewtonianShearSolution/makefile
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Rheology/tests/NonNewtonianShearSolution/makefile 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/Rheology/tests/NonNewtonianShearSolution/makefile 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,24 @@
+
+#Finds the Absolute path to the Project Root directory
+SHELL := /bin/bash
+PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
+include ${PROJ_ROOT}/Makefile.system
+
+# Subdirectories
+#subdirs := tests
+
+# Source Code and Header files
+SRCS := $(wildcard *.c)
+HDRS := $(wildcard *.h)
+
+# What to call the plugin
+modName := $(shell basename `pwd`)
+mod = ${PROJECT}_${modName}
+
+# Where to put header files
+includes = ${PROJECT}/${modName}
+
+# External Libraries and Headers
+packages = UNDERWORLD PICELLERATOR STG_FEM STGERMAIN PETSC MPI XML PYTHON
+
+include ${PROJ_ROOT}/Makefile.vmake
Added: long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN3.0of1.StrainRateField-ErrorFile.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN3.0of1.StrainRateField-ErrorFile.expected 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN3.0of1.StrainRateField-ErrorFile.expected 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,4 @@
+Timestep 0: Total integrated value of 'StrainRateField-ErrorMagnitudeField' is outside a tolerance 1e-05.
+Timestep 1: Total integrated value of 'StrainRateField-ErrorMagnitudeField' is within a tolerance 1e-05.
+Timestep 2: Total integrated value of 'StrainRateField-ErrorMagnitudeField' is within a tolerance 1e-05.
+Timestep 3: Total integrated value of 'StrainRateField-ErrorMagnitudeField' is within a tolerance 1e-05.
Added: long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN3.0of1.StressField-ErrorFile.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN3.0of1.StressField-ErrorFile.expected 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN3.0of1.StressField-ErrorFile.expected 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,4 @@
+Timestep 0: Total integrated value of 'StressField-ErrorMagnitudeField' is outside a tolerance 1e-05.
+Timestep 1: Total integrated value of 'StressField-ErrorMagnitudeField' is within a tolerance 1e-05.
+Timestep 2: Total integrated value of 'StressField-ErrorMagnitudeField' is within a tolerance 1e-05.
+Timestep 3: Total integrated value of 'StressField-ErrorMagnitudeField' is within a tolerance 1e-05.
Added: long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN3.0of1.VelocityField-ErrorFile.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN3.0of1.VelocityField-ErrorFile.expected 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN3.0of1.VelocityField-ErrorFile.expected 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,4 @@
+Timestep 0: Total integrated value of 'VelocityField-ErrorMagnitudeField' is outside a tolerance 1e-06.
+Timestep 1: Total integrated value of 'VelocityField-ErrorMagnitudeField' is within a tolerance 1e-06.
+Timestep 2: Total integrated value of 'VelocityField-ErrorMagnitudeField' is within a tolerance 1e-06.
+Timestep 3: Total integrated value of 'VelocityField-ErrorMagnitudeField' is within a tolerance 1e-06.
Added: long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN3.0of1.ViscosityField-ErrorFile.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN3.0of1.ViscosityField-ErrorFile.expected 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN3.0of1.ViscosityField-ErrorFile.expected 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,4 @@
+Timestep 0: Total integrated value of 'ViscosityField-ErrorMagnitudeField' is outside a tolerance 0.0001.
+Timestep 1: Total integrated value of 'ViscosityField-ErrorMagnitudeField' is within a tolerance 0.0001.
+Timestep 2: Total integrated value of 'ViscosityField-ErrorMagnitudeField' is within a tolerance 0.0001.
+Timestep 3: Total integrated value of 'ViscosityField-ErrorMagnitudeField' is within a tolerance 0.0001.
Added: long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN4.0of1.StrainRateField-ErrorFile.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN4.0of1.StrainRateField-ErrorFile.expected 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN4.0of1.StrainRateField-ErrorFile.expected 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,4 @@
+Timestep 0: Total integrated value of 'StrainRateField-ErrorMagnitudeField' is outside a tolerance 1e-05.
+Timestep 1: Total integrated value of 'StrainRateField-ErrorMagnitudeField' is within a tolerance 1e-05.
+Timestep 2: Total integrated value of 'StrainRateField-ErrorMagnitudeField' is within a tolerance 1e-05.
+Timestep 3: Total integrated value of 'StrainRateField-ErrorMagnitudeField' is within a tolerance 1e-05.
Added: long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN4.0of1.StressField-ErrorFile.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN4.0of1.StressField-ErrorFile.expected 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN4.0of1.StressField-ErrorFile.expected 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,4 @@
+Timestep 0: Total integrated value of 'StressField-ErrorMagnitudeField' is outside a tolerance 1e-05.
+Timestep 1: Total integrated value of 'StressField-ErrorMagnitudeField' is within a tolerance 1e-05.
+Timestep 2: Total integrated value of 'StressField-ErrorMagnitudeField' is within a tolerance 1e-05.
+Timestep 3: Total integrated value of 'StressField-ErrorMagnitudeField' is within a tolerance 1e-05.
Added: long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN4.0of1.VelocityField-ErrorFile.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN4.0of1.VelocityField-ErrorFile.expected 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN4.0of1.VelocityField-ErrorFile.expected 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,4 @@
+Timestep 0: Total integrated value of 'VelocityField-ErrorMagnitudeField' is outside a tolerance 1e-06.
+Timestep 1: Total integrated value of 'VelocityField-ErrorMagnitudeField' is within a tolerance 1e-06.
+Timestep 2: Total integrated value of 'VelocityField-ErrorMagnitudeField' is within a tolerance 1e-06.
+Timestep 3: Total integrated value of 'VelocityField-ErrorMagnitudeField' is within a tolerance 1e-06.
Added: long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN4.0of1.ViscosityField-ErrorFile.expected
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN4.0of1.ViscosityField-ErrorFile.expected 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/Rheology/tests/expected/testNonNewtonianShearN4.0of1.ViscosityField-ErrorFile.expected 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,4 @@
+Timestep 0: Total integrated value of 'ViscosityField-ErrorMagnitudeField' is outside a tolerance 0.0001.
+Timestep 1: Total integrated value of 'ViscosityField-ErrorMagnitudeField' is within a tolerance 0.0001.
+Timestep 2: Total integrated value of 'ViscosityField-ErrorMagnitudeField' is within a tolerance 0.0001.
+Timestep 3: Total integrated value of 'ViscosityField-ErrorMagnitudeField' is within a tolerance 0.0001.
Modified: long/3D/Gale/trunk/src/Underworld/Rheology/tests/testDirector.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Rheology/tests/testDirector.xml 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/Rheology/tests/testDirector.xml 2006-06-30 23:42:28 UTC (rev 3908)
@@ -97,10 +97,10 @@
</struct>
<struct name="alignmentDrawingObject">
<param name="Type">lucSwarmVectors</param>
- <param name="Swarm">materialPoints</param>
+ <param name="Swarm">picIntegrationPoints</param>
<param name="ColourVariable">alignment</param>
<param name="ColourMap">alignmentColourMap</param>
- <param name="DirectionVariable">materialPoints-Director</param>
+ <param name="DirectionVariable">picIntegrationPoints-Director</param>
<param name="arrowHeadSize">0.0</param>
</struct>
<struct name="AlignmentVP">
Added: long/3D/Gale/trunk/src/Underworld/Rheology/tests/testNonNewtonianShear.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Rheology/tests/testNonNewtonianShear.xml 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/Rheology/tests/testNonNewtonianShear.xml 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,171 @@
+<?xml version="1.0"?>
+<!DOCTYPE StGermainData SYSTEM "stgermain.dtd">
+
+<StGermainData xmlns="http://www.vpac.org/StGermain/XML_IO_Handler/Jun2003">
+
+ <!-- Component Stuff -->
+ <include>../../InputFiles/StgFEM_Components/ElementLayout.xml </include>
+ <include>../../InputFiles/StgFEM_Components/ConstantMesh.xml </include>
+ <include>../../InputFiles/StgFEM_Components/LinearMesh.xml </include>
+ <include>../../InputFiles/StgFEM_Components/VelocityField.xml </include>
+ <include>../../InputFiles/StgFEM_Components/PressureField.xml </include>
+ <include>../../InputFiles/StgFEM_Components/GaussSwarm.xml </include>
+ <include>../../InputFiles/StgFEM_Components/TimeIntegrator.xml </include>
+ <include>../../InputFiles/PIC_Components/MaterialPointSwarm.xml </include>
+ <include>../../InputFiles/Underworld_Components/StokesFlowUzawaPIC.xml </include>
+ <include>../../InputFiles/Underworld_Components/StressField2D.xml </include>
+ <include>../../InputFiles/Underworld_Components/ViscosityField.xml </include>
+
+ <list name="plugins" mergeType="merge">
+ <!-- Output Plugins -->
+ <param>StG_FEM_FrequentOutput</param>
+ <param>Underworld_Vrms</param>
+ <param>StG_FEM_CPUTime</param>
+ <param>Underworld_NonNewtonianShearSolution</param>
+ </list>
+
+ <!-- Rheology Components -->
+ <struct name="components" mergeType="merge">
+ <!-- Geometry -->
+ <struct name="backgroundShape">
+ <param name="Type">Everywhere</param>
+ </struct>
+ <!-- Rheology -->
+ <struct name="layerViscosity">
+ <param name="Type">MaterialViscosity</param>
+ <param name="eta0">1.0e2</param>
+ </struct>
+ <struct name="nonNewtonianRheology">
+ <param name="Type">NonNewtonian</param>
+ <param name="stressExponent">stressExponent</param>
+ </struct>
+ <struct name="material">
+ <param name="Type">RheologyMaterial</param>
+ <param name="Shape">backgroundShape</param>
+ <list name="Rheology">
+ <param>layerViscosity</param>
+ <param>nonNewtonianRheology</param>
+ </list>
+ </struct>
+
+ <!-- Periodic boundary conditions -->
+ <struct name="velocityLinkedDofs">
+ <param name="Type">LinkedDofInfo</param>
+ <param name="Mesh">mesh-linear</param>
+ <param name="DofLayout">velocityDofLayout</param>
+
+ <list name="linkSpecifications">
+ <struct>
+ <param name="wallPair">left-right</param>
+ <param name="dof">0</param>
+ </struct>
+ <struct>
+ <param name="wallPair">left-right</param>
+ <param name="dof">1</param>
+ </struct>
+ </list>
+ </struct>
+
+ <struct name="periodicBCsManager">
+ <param name="Type">PeriodicBoundariesManager</param>
+ <param name="Geometry">geometry</param>
+ <param name="Swarm">materialSwarm</param>
+ <param name="TimeIntegrator">timeIntegrator</param>
+
+ <list name="PeriodicBoundaries">
+ <param>I_AXIS</param>
+ </list>
+ </struct>
+
+ <struct name="weights" mergeType="replace">
+ <param name="Type">MomentBalanceWeights</param>
+ </struct>
+ </struct>
+
+ <param name="VelocityField-Tolerance"> 1e-6 </param>
+ <param name="StrainRateField-Tolerance"> 1e-5 </param>
+ <param name="StressField-Tolerance"> 1e-5 </param>
+ <param name="ViscosityField-Tolerance"> 1e-4 </param>
+ <param name="stressExponent"> 3 </param>
+
+ <param name="isPeriodicI"> t </param>
+
+ <!-- Simulation control -->
+ <param name="maxTimeSteps"> 3 </param>
+
+ <param name="outputPath"> ./output </param>
+ <param name="dumpEvery"> 1 </param>
+
+ <param name="particlesPerCell"> 20 </param>
+
+ <!-- Non-linear stuff -->
+ <param name="nonLinearMaxIterations"> 50 </param>
+ <param name="nonLinearTolerance"> 1e-6 </param>
+
+ <!-- Journal Control -->
+ <param name="journal.info.Context-verbose">True</param>
+ <param name="journal-level.info.Stg_ComponentFactory">2</param>
+ <param name="journal.debug">f</param>
+ <param name="journal-enable-branch.debug.StG_FEM">t</param>
+ <param name="journal-level-branch.debug.StG_FEM"> 1 </param>
+
+ <!-- Geometry & Mesh setup -->
+ <param name="dim"> 2 </param>
+ <param name="elementResI"> 20 </param>
+ <param name="elementResJ"> 20 </param>
+ <param name="elementResK"> 1 </param>
+ <param name="shadowDepth"> 1 </param>
+ <param name="minX"> 0.0 </param>
+ <param name="minY"> 0.0 </param>
+ <param name="minZ"> 0.0 </param>
+ <param name="maxX"> 1.0 </param>
+ <param name="maxY"> 1.0 </param>
+ <param name="maxZ"> 1.0 </param>
+ <param name="allowUnbalancing"> True </param>
+
+ <!-- Velocity BCs -->
+ <struct name="velocityBCs" mergeType="replace">
+ <param name="type">CompositeVC</param>
+ <list name="vcList">
+ <struct>
+ <param name="type"> WallVC </param>
+ <param name="wall"> bottom </param>
+ <list name="variables">
+ <struct>
+ <param name="name"> vy</param>
+ <param name="type"> double</param>
+ <param name="value"> 0 </param>
+ </struct>
+ <struct>
+ <param name="name"> vx</param>
+ <param name="type"> double</param>
+ <param name="value"> 0 </param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type"> WallVC </param>
+ <param name="wall"> top </param>
+ <list name="variables">
+ <struct>
+ <param name="name"> vx </param>
+ <param name="type"> func </param>
+ <param name="value"> ShearTrigger </param>
+ </struct>
+ <struct>
+ <param name="name"> vy </param>
+ <param name="type"> double </param>
+ <param name="value"> 0 </param>
+ </struct>
+ </list>
+ </struct>
+ </list>
+ </struct>
+
+
+ <!-- Integration Scheme configuration -->
+ <param name="gaussParticlesX"> 2 </param>
+ <param name="gaussParticlesY"> 2 </param>
+ <param name="gaussParticlesZ"> 2 </param>
+
+</StGermainData>
Added: long/3D/Gale/trunk/src/Underworld/Rheology/tests/testNonNewtonianShearN3.0of1.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Rheology/tests/testNonNewtonianShearN3.0of1.sh 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/Rheology/tests/testNonNewtonianShearN3.0of1.sh 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,12 @@
+#!/bin/sh
+
+TEST_SCRIPT=./VMake/executableTester.sh
+until test -r ${TEST_SCRIPT} ; do
+ TEST_SCRIPT=../${TEST_SCRIPT}
+done
+. ${TEST_SCRIPT}
+
+setUpdateModeFromArg ${1}
+
+testname="`basename $0 .sh`"
+runAndHandleSystemTestStdLocations "Underworld testNonNewtonianShear.xml --stressExponent=3" "$0" "$@"
Property changes on: long/3D/Gale/trunk/src/Underworld/Rheology/tests/testNonNewtonianShearN3.0of1.sh
___________________________________________________________________
Name: svn:executable
+ *
Added: long/3D/Gale/trunk/src/Underworld/Rheology/tests/testNonNewtonianShearN4.0of1.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Rheology/tests/testNonNewtonianShearN4.0of1.sh 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/Rheology/tests/testNonNewtonianShearN4.0of1.sh 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,12 @@
+#!/bin/sh
+
+TEST_SCRIPT=./VMake/executableTester.sh
+until test -r ${TEST_SCRIPT} ; do
+ TEST_SCRIPT=../${TEST_SCRIPT}
+done
+. ${TEST_SCRIPT}
+
+setUpdateModeFromArg ${1}
+
+testname="`basename $0 .sh`"
+runAndHandleSystemTestStdLocations "Underworld testNonNewtonianShear.xml --stressExponent=4" "$0" "$@"
Property changes on: long/3D/Gale/trunk/src/Underworld/Rheology/tests/testNonNewtonianShearN4.0of1.sh
___________________________________________________________________
Name: svn:executable
+ *
Modified: long/3D/Gale/trunk/src/Underworld/Utils/src/Context.c
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Utils/src/Context.c 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/Utils/src/Context.c 2006-06-30 23:42:28 UTC (rev 3908)
@@ -67,7 +67,7 @@
_UnderworldContext_ComponentConstruct,
_AbstractContext_Build,
_AbstractContext_Initialise,
- _UnderworldContext_ComponentExecute,
+ _AbstractContext_Execute,
_AbstractContext_Destroy,
_UnderworldContext_SetDt,
name,
@@ -95,7 +95,7 @@
_UnderworldContext_ComponentConstruct,
_AbstractContext_Build,
_AbstractContext_Initialise,
- _UnderworldContext_ComponentExecute,
+ _AbstractContext_Execute,
_AbstractContext_Destroy,
_UnderworldContext_SetDt,
name,
@@ -238,7 +238,7 @@
/* Swarms */
self->gaussSwarm = (Swarm*) LiveComponentRegister_Get( self->CF->LCRegister, "gaussSwarm" );
- self->materialPoints = (IntegrationPointsSwarm*) LiveComponentRegister_Get( self->CF->LCRegister, "materialPoints" );
+ self->picIntegrationPoints = (IntegrationPointsSwarm*) LiveComponentRegister_Get( self->CF->LCRegister, "picIntegrationPoints" );
/* Get copy of fields from register */
self->velocityField = (FeVariable*) FieldVariable_Register_GetByName( fV_Register, "VelocityField" );
@@ -265,8 +265,4 @@
_UnderworldContext_Init( self );
}
-
-void _UnderworldContext_ComponentExecute( void* context, void *data ){
-
-}
-
+
Modified: long/3D/Gale/trunk/src/Underworld/Utils/src/Context.h
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Utils/src/Context.h 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/Utils/src/Context.h 2006-06-30 23:42:28 UTC (rev 3908)
@@ -63,7 +63,7 @@
ConstitutiveMatrix* constitutiveMatrix; \
/* Swarms */ \
Swarm* gaussSwarm; \
- IntegrationPointsSwarm* materialPoints; \
+ IntegrationPointsSwarm* picIntegrationPoints; \
/* FeVariables */ \
FeVariable* velocityField; \
FeVariable* velocityGradientsField; \
@@ -130,7 +130,5 @@
void UnderworldContext_AssignPointers( void* context );
void _UnderworldContext_ComponentConstruct( void* context, Stg_ComponentFactory *cf );
-
- void _UnderworldContext_ComponentExecute( void* context, void *data );
-
+
#endif
Modified: long/3D/Gale/trunk/src/Underworld/Utils/src/Init.c
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Utils/src/Init.c 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/Utils/src/Init.c 2006-06-30 23:42:28 UTC (rev 3908)
@@ -61,10 +61,14 @@
Stg_ComponentRegister_Add( componentRegister, UnderworldContext_Type , "0", _UnderworldContext_DefaultNew );
Stg_ComponentRegister_Add( componentRegister, PressureTemperatureOutput_Type, "0", _PressureTemperatureOutput_DefaultNew );
Stg_ComponentRegister_Add( componentRegister, RadiogenicHeatingTerm_Type, "0", _RadiogenicHeatingTerm_DefaultNew );
+ Stg_ComponentRegister_Add( componentRegister, StressField_Type , "0", _StressField_DefaultNew );
+ Stg_ComponentRegister_Add( componentRegister, ViscosityField_Type , "0", _ViscosityField_DefaultNew );
RegisterParent( UnderworldContext_Type, PICelleratorContext_Type );
RegisterParent( PressureTemperatureOutput_Type, SwarmOutput_Type );
RegisterParent( RadiogenicHeatingTerm_Type, ForceTerm_Type );
+ RegisterParent( StressField_Type, ParticleFeVariable_Type );
+ RegisterParent( ViscosityField_Type, ParticleFeVariable_Type );
return True;
}
Added: long/3D/Gale/trunk/src/Underworld/Utils/src/StressField.c
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Utils/src/StressField.c 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/Utils/src/StressField.c 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,302 @@
+/*~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+**
+** Monash Cluster Computing, Australia
+** (C) 2003-2004 All Rights Reserved
+**
+** Primary Authors:
+** Robert Turnbull, MCC
+**
+**~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~*/
+
+
+#include <mpi.h>
+#include <StGermain/StGermain.h>
+#include <StG_FEM/StG_FEM.h>
+#include <PICellerator/PICellerator.h>
+
+#include <Underworld/Rheology/Rheology.h>
+
+#include "types.h"
+#include "StressField.h"
+#include <assert.h>
+#include <string.h>
+
+const Type StressField_Type = "StressField";
+
+StressField* _StressField_New(
+ SizeT _sizeOfSelf,
+ Type type,
+ Stg_Class_DeleteFunction* _delete,
+ Stg_Class_PrintFunction* _print,
+ Stg_Class_CopyFunction* _copy,
+ Stg_Component_DefaultConstructorFunction* _defaultConstructor,
+ Stg_Component_ConstructFunction* _construct,
+ Stg_Component_BuildFunction* _build,
+ Stg_Component_InitialiseFunction* _initialise,
+ Stg_Component_ExecuteFunction* _execute,
+ Stg_Component_DestroyFunction* _destroy,
+ FieldVariable_InterpolateValueAtFunction* _interpolateValueAt,
+ FieldVariable_GetValueFunction* _getMinGlobalFeMagnitude,
+ FieldVariable_GetValueFunction* _getMaxGlobalFeMagnitude,
+ FieldVariable_GetCoordFunction* _getMinAndMaxLocalCoords,
+ FieldVariable_GetCoordFunction* _getMinAndMaxGlobalCoords,
+ FeVariable_InterpolateWithinElementFunction* _interpolateWithinElement,
+ FeVariable_GetValueAtNodeFunction* _getValueAtNode,
+ ParticleFeVariable_ValueAtParticleFunction* _valueAtParticle,
+ Name name )
+{
+ StressField* self;
+
+ /* Call private constructor of parent - this will set virtual functions of parent and continue up the hierarchy tree. At the beginning of the tree it will allocate memory of the size of object and initialise all the memory to zero. */
+ assert( _sizeOfSelf >= sizeof(StressField) );
+ self = (StressField*)
+ _ParticleFeVariable_New(
+ _sizeOfSelf,
+ type,
+ _delete,
+ _print,
+ _copy,
+ _defaultConstructor,
+ _construct,
+ _build,
+ _initialise,
+ _execute,
+ _destroy,
+ _interpolateValueAt,
+ _getMinGlobalFeMagnitude,
+ _getMaxGlobalFeMagnitude,
+ _getMinAndMaxLocalCoords,
+ _getMinAndMaxGlobalCoords,
+ _interpolateWithinElement,
+ _getValueAtNode,
+ _valueAtParticle,
+ name );
+
+ return self;
+}
+
+void _StressField_Init(
+ StressField* self,
+ FeVariable* strainRateField,
+ ConstitutiveMatrix* constitutiveMatrix,
+ Variable* stressVariable,
+ Variable_Register* variable_Register )
+{
+ Name tmpName;
+ Name variableName[6];
+ Index variable_I;
+ Node_DomainIndex node_I;
+ Dimension_Index dim = constitutiveMatrix->dim;
+
+ /* Assign Pointers */
+ self->strainRateField = strainRateField;
+ self->constitutiveMatrix = constitutiveMatrix;
+
+ self->fieldComponentCount = StGermain_nSymmetricTensorVectorComponents( dim );
+
+ if ( stressVariable ) {
+ self->stressVariable = stressVariable;
+ self->_valueAtParticle = _StressField_ValueAtParticle_FromVariable;
+ }
+
+ if ( dim == 2 ) {
+ variableName[0] = StG_Strdup( "tau_xx" );
+ variableName[1] = StG_Strdup( "tau_yy" );
+ variableName[2] = StG_Strdup( "tau_xy" );
+ }
+ else {
+ variableName[0] = StG_Strdup( "tau_xx" );
+ variableName[1] = StG_Strdup( "tau_yy" );
+ variableName[2] = StG_Strdup( "tau_zz" );
+ variableName[3] = StG_Strdup( "tau_xy" );
+ variableName[4] = StG_Strdup( "tau_xz" );
+ variableName[5] = StG_Strdup( "tau_yz" );
+ }
+
+ /* Create Variable to store data */
+ tmpName = Stg_Object_AppendSuffix( self, "DataVariable" );
+ self->dataVariable = Variable_NewVector(
+ tmpName,
+ Variable_DataType_Double,
+ self->fieldComponentCount,
+ &self->feMesh->nodeDomainCount,
+ (void**)&self->data,
+ variable_Register,
+ variableName[0],
+ variableName[1],
+ variableName[2],
+ variableName[3],
+ variableName[4],
+ variableName[5] );
+ Memory_Free( tmpName );
+
+ /* Create Dof Layout */
+ tmpName = Stg_Object_AppendSuffix( self, "DofLayout" );
+ self->dofLayout = DofLayout_New( tmpName, variable_Register, self->feMesh->layout->decomp->nodeDomainCount );
+ for( variable_I = 0; variable_I < self->fieldComponentCount ; variable_I++ ) {
+ self->dataVariableList[ variable_I ] = Variable_Register_GetByName( variable_Register, variableName[ variable_I ] );
+ for( node_I = 0; node_I < self->feMesh->layout->decomp->nodeDomainCount ; node_I++ ) {
+ DofLayout_AddDof_ByVarName( self->dofLayout, variableName[variable_I], node_I );
+ }
+ /* Free Name */
+ Memory_Free( variableName[ variable_I ] );
+ }
+ Memory_Free( tmpName );
+ self->eqNum->dofLayout = self->dofLayout;
+
+
+ /* Set pointers to swarm to be the same as the one on the constitutive matrix */
+ self->assemblyTerm->integrationSwarm = self->constitutiveMatrix->integrationSwarm;
+ self->massMatrixForceTerm->integrationSwarm = self->constitutiveMatrix->integrationSwarm;
+}
+
+/* --- Virtual Function Implementations --- */
+void _StressField_Delete( void* stressField ) {
+ StressField* self = (StressField*) stressField;
+
+ Stg_Class_Delete( self->assemblyVector );
+ Memory_Free( self->assemblyVectorName );
+
+ _FeVariable_Delete( self );
+}
+
+void _StressField_Print( void* stressField, Stream* stream ) {
+ StressField* self = (StressField*) stressField;
+
+ /* General info */
+ Journal_Printf( stream, "StressField (ptr): %p\n", self );
+
+ /* Print parent */
+ _FeVariable_Print( self, stream );
+
+ /* StressField info */
+ Journal_PrintPointer( stream, self->strainRateField );
+ Journal_PrintPointer( stream, self->constitutiveMatrix );
+}
+
+
+void* _StressField_Copy( void* feVariable, void* dest, Bool deep, Name nameExt, PtrMap* ptrMap ) {
+ StressField* self = (StressField*)feVariable;
+ StressField* newStressField;
+
+ newStressField = (StressField*) _FeVariable_Copy( feVariable, dest, deep, nameExt, ptrMap );
+
+ newStressField->strainRateField = self->strainRateField;
+ newStressField->constitutiveMatrix = self->constitutiveMatrix;
+
+ return (void*)newStressField;
+}
+
+void* _StressField_DefaultNew( Name name ) {
+ return (void*) _StressField_New(
+ sizeof(StressField),
+ StressField_Type,
+ _StressField_Delete,
+ _StressField_Print,
+ _StressField_Copy,
+ _StressField_DefaultNew,
+ _StressField_Construct,
+ _StressField_Build,
+ _StressField_Initialise,
+ _StressField_Execute,
+ _StressField_Destroy,
+ _FeVariable_InterpolateValueAt,
+ _FeVariable_GetMinGlobalFieldMagnitude,
+ _FeVariable_GetMaxGlobalFieldMagnitude,
+ _FeVariable_GetMinAndMaxLocalCoords,
+ _FeVariable_GetMinAndMaxGlobalCoords,
+ _FeVariable_InterpolateNodeValuesToElLocalCoord,
+ _FeVariable_GetValueAtNode,
+ _StressField_ValueAtParticle_Recalculate,
+ name );
+}
+
+void _StressField_Construct( void* stressField, Stg_ComponentFactory* cf ){
+ StressField* self = (StressField*) stressField;
+ FeVariable* strainRateField;
+ ConstitutiveMatrix* constitutiveMatrix;
+ Variable_Register* variable_Register;
+ Name stressVariableName;
+ Variable* stressVariable;
+
+ strainRateField = Stg_ComponentFactory_ConstructByKey( cf, self->name, "StrainRateField", FeVariable, True );
+ constitutiveMatrix = Stg_ComponentFactory_ConstructByKey( cf, self->name, "ConstitutiveMatrix", ConstitutiveMatrix, True );
+ variable_Register = (Variable_Register*) Stg_ObjectList_Get( cf->registerRegister, "Variable_Register" );
+ assert( variable_Register );
+
+ stressVariableName = Stg_ComponentFactory_GetString( cf, self->name, "StressVariable", "Stress" );
+ stressVariable = Variable_Register_GetByName( variable_Register, stressVariableName );
+
+ /* Construct Parent */
+ _ParticleFeVariable_Construct( self, cf );
+
+ _FieldVariable_Construct( self, cf );
+
+ _StressField_Init( self, strainRateField, constitutiveMatrix, stressVariable, variable_Register );
+}
+
+void _StressField_Build( void* stressField, void* data ) {
+ StressField* self = (StressField*) stressField;
+ Variable_Index variable_I;
+
+ _ParticleFeVariable_Build( self, data );
+
+ /* Build and Update all Variables that this component has created */
+ Stg_Component_Build( self->dataVariable, data, False); Variable_Update( self->dataVariable );
+ for( variable_I = 0; variable_I < self->fieldComponentCount ; variable_I++ ) {
+ Stg_Component_Build( self->dataVariableList[ variable_I ], data, False); Variable_Update( self->dataVariableList[ variable_I ] );
+ }
+
+}
+void _StressField_Initialise( void* stressField, void* data ) {
+ StressField* self = (StressField*) stressField;
+ Variable_Index variable_I;
+
+ _ParticleFeVariable_Initialise( self, data );
+
+ /* Initialise and Update all Variables that this component has created */
+ Stg_Component_Initialise( self->dataVariable, data, False); Variable_Update( self->dataVariable );
+ for( variable_I = 0; variable_I < self->fieldComponentCount ; variable_I++ ) {
+ Stg_Component_Initialise( self->dataVariableList[ variable_I ], data, False); Variable_Update( self->dataVariableList[ variable_I ] );
+ }
+}
+void _StressField_Execute( void* stressField, void* data ) {
+ StressField* self = (StressField*) stressField;
+
+ _ParticleFeVariable_Execute( self, data );
+}
+void _StressField_Destroy( void* stressField, void* data ) {
+ StressField* self = (StressField*) stressField;
+
+ _ParticleFeVariable_Destroy( self, data );
+}
+void _StressField_ValueAtParticle_Recalculate( void* stressField, IntegrationPointsSwarm* swarm, Element_LocalIndex lElement_I, void* _particle, double* stress ) {
+ StressField* self = (StressField*) stressField;
+ SymmetricTensor strainRate;
+ IntegrationPoint* particle = (IntegrationPoint*) _particle;
+
+ /* Calculate stress from strain rate and constitutive matrix */
+ ConstitutiveMatrix_Assemble( self->constitutiveMatrix, lElement_I, particle );
+ FeVariable_InterpolateWithinElement( self->strainRateField, lElement_I, particle->xi, strainRate );
+ ConstitutiveMatrix_CalculateStress( self->constitutiveMatrix, strainRate, stress );
+
+ assert ( !isnan( stress[0] ) );
+ assert ( !isnan( stress[1] ) );
+ assert ( !isnan( stress[2] ) );
+
+}
+
+void _StressField_ValueAtParticle_FromVariable( void* stressField, IntegrationPointsSwarm* swarm, Element_LocalIndex lElement_I, void* particle, double* stress ) {
+ StressField* self = (StressField*) stressField;
+ double* stressParticleExt;
+ MaterialPointsSwarm* materialPointsSwarm;
+ void* materialPoint;
+
+ /* Ok, we break any fancy mapper stuff here and assume the materialParticles correspond exactly to the
+ * Integration ones: */
+ materialPoint = OneToOneMapper_GetMaterialPoint( swarm->mapper, particle, &materialPointsSwarm );
+
+ /* Get pointer to stress using variable */
+ stressParticleExt = (double*) ((ArithPointer) materialPoint + (ArithPointer)self->stressVariable->offsets[0]);
+ memcpy( stress, stressParticleExt, sizeof(double)*self->fieldComponentCount );
+}
Added: long/3D/Gale/trunk/src/Underworld/Utils/src/StressField.h
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Utils/src/StressField.h 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/Utils/src/StressField.h 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,70 @@
+/*~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+**
+** Monash Cluster Computing, Australia
+** (C) 2003-2004 All Rights Reserved
+**
+** Primary Authors:
+** Robert Turnbull, MCC
+**
+**~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~*/
+
+#ifndef __Underworld_MaterialPoints_StressField_h__
+#define __Underworld_MaterialPoints_StressField_h__
+
+ /** Textual name of this class - This is a global pointer which is used for times when you need to refer to class and not a particular instance of a class */
+ extern const Type StressField_Type;
+
+ /** StressField class contents - this is defined as a macro so that sub-classes of this class can use this macro at the start of the definition of their struct */
+ #define __StressField \
+ /* Macro defining parent goes here - This means you can cast this class as its parent */ \
+ __ParticleFeVariable \
+ \
+ /* Virtual functions go here */ \
+ \
+ /* Passed in parameters */ \
+ FeVariable* strainRateField; \
+ ConstitutiveMatrix* constitutiveMatrix; \
+ Variable* dataVariableList[6]; \
+ Variable* stressVariable;
+
+ struct StressField { __StressField };
+
+ /* --- Contstructors / Destructors --- */
+ StressField* _StressField_New(
+ SizeT _sizeOfSelf,
+ Type type,
+ Stg_Class_DeleteFunction* _delete,
+ Stg_Class_PrintFunction* _print,
+ Stg_Class_CopyFunction* _copy,
+ Stg_Component_DefaultConstructorFunction* _defaultConstructor,
+ Stg_Component_ConstructFunction* _construct,
+ Stg_Component_BuildFunction* _build,
+ Stg_Component_InitialiseFunction* _initialise,
+ Stg_Component_ExecuteFunction* _execute,
+ Stg_Component_DestroyFunction* _destroy,
+ FieldVariable_InterpolateValueAtFunction* _interpolateValueAt,
+ FieldVariable_GetValueFunction* _getMinGlobalFeMagnitude,
+ FieldVariable_GetValueFunction* _getMaxGlobalFeMagnitude,
+ FieldVariable_GetCoordFunction* _getMinAndMaxLocalCoords,
+ FieldVariable_GetCoordFunction* _getMinAndMaxGlobalCoords,
+ FeVariable_InterpolateWithinElementFunction* _interpolateWithinElement,
+ FeVariable_GetValueAtNodeFunction* _getValueAtNode,
+ ParticleFeVariable_ValueAtParticleFunction* _valueAtParticle,
+ Name name );
+
+ /** Print the contents of an StressField construct */
+ void* _StressField_DefaultNew( Name name );
+ void _StressField_Delete( void* variable );
+ void _StressField_Print( void* variable, Stream* stream );
+ void* _StressField_Copy( void* feVariable, void* dest, Bool deep, Name nameExt, PtrMap* ptrMap );
+
+ void _StressField_Construct( void* variable, Stg_ComponentFactory* cf ) ;
+ void _StressField_Build( void* variable, void* data ) ;
+ void _StressField_Initialise( void* variable, void* data ) ;
+ void _StressField_Execute( void* variable, void* data ) ;
+ void _StressField_Destroy( void* variable, void* data ) ;
+ void _StressField_ValueAtParticle_Recalculate( void* stressField, IntegrationPointsSwarm* swarm, Element_LocalIndex lElement_I, void* particle, double* stress ) ;
+ void _StressField_ValueAtParticle_FromVariable( void* stressField, IntegrationPointsSwarm* swarm, Element_LocalIndex lElement_I, void* particle, double* stress ) ;
+
+
+#endif
Added: long/3D/Gale/trunk/src/Underworld/Utils/src/StressField.meta
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Utils/src/StressField.meta 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/Utils/src/StressField.meta 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,46 @@
+<?xml version="1.0"?>
+<!DOCTYPE StGermainData SYSTEM "stgermain.dtd">
+<StGermainData xmlns="http://www.vpac.org/StGermain/XML_IO_Handler/Jun2003">
+
+<param name="Name">StressField</param>
+<param name="Organisation">MCC</param>
+<param name="Project">Underworld</param>
+<param name="Location">./Underworld/Utils/src/</param>
+<param name="Project Web">http://mcc.monash.edu.au/Underworld</param>
+<param name="Copyright">Copyright (c) 2005, Monash Cluster Computing</param>
+<param name="License">http://www.opensource.org/licenses/bsd-license.php</param>
+<param name="Parent">ParticleFeVariable</param>
+<param name="Description">...</param>
+
+<!--Now the interesting stuff-->
+
+
+<list name="Params">
+
+</list>
+
+<list name="Dependencies">
+ <struct>
+ <param name="Essential">True</param>
+ <param name="Name">StrainRateField</param>
+ <param name="Type">FeVariable</param>
+ <param name="Description">...</param>
+ </struct>
+
+<!-- PLEASE, check the above struct information is accurate, in line number 213 of the c file and then remove this comment afterwards -->
+
+ <struct>
+ <param name="Essential">True</param>
+ <param name="Name">ConstitutiveMatrix</param>
+ <param name="Type">ConstitutiveMatrix</param>
+ <param name="Description">...</param>
+ </struct>
+
+<!-- PLEASE, check the above struct information is accurate, in line number 214 of the c file and then remove this comment afterwards -->
+
+
+</list>
+<!-- Add an exmaple XML if possible -->
+<param name="Example">...</param>
+
+</StGermainData>
Modified: long/3D/Gale/trunk/src/Underworld/Utils/src/Utils.h
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Utils/src/Utils.h 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/Utils/src/Utils.h 2006-06-30 23:42:28 UTC (rev 3908)
@@ -48,6 +48,8 @@
#include "types.h"
#include "Context.h"
+ #include "StressField.h"
+ #include "ViscosityField.h"
#include "PressureTemperatureOutput.h"
#include "RadiogenicHeatingTerm.h"
#include "Init.h"
Added: long/3D/Gale/trunk/src/Underworld/Utils/src/ViscosityField.c
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Utils/src/ViscosityField.c 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/Utils/src/ViscosityField.c 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,214 @@
+/*~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+**
+** Monash Cluster Computing, Australia
+** (C) 2003-2004 All Rights Reserved
+**
+** Primary Authors:
+** Robert Turnbull, MCC
+**
+**~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~*/
+
+
+#include <mpi.h>
+#include <StGermain/StGermain.h>
+#include <StG_FEM/StG_FEM.h>
+#include <PICellerator/PICellerator.h>
+
+#include <Underworld/Rheology/Rheology.h>
+
+#include "types.h"
+#include "ViscosityField.h"
+#include <assert.h>
+
+const Type ViscosityField_Type = "ViscosityField";
+
+ViscosityField* _ViscosityField_New(
+ SizeT _sizeOfSelf,
+ Type type,
+ Stg_Class_DeleteFunction* _delete,
+ Stg_Class_PrintFunction* _print,
+ Stg_Class_CopyFunction* _copy,
+ Stg_Component_DefaultConstructorFunction* _defaultConstructor,
+ Stg_Component_ConstructFunction* _construct,
+ Stg_Component_BuildFunction* _build,
+ Stg_Component_InitialiseFunction* _initialise,
+ Stg_Component_ExecuteFunction* _execute,
+ Stg_Component_DestroyFunction* _destroy,
+ FieldVariable_InterpolateValueAtFunction* _interpolateValueAt,
+ FieldVariable_GetValueFunction* _getMinGlobalFeMagnitude,
+ FieldVariable_GetValueFunction* _getMaxGlobalFeMagnitude,
+ FieldVariable_GetCoordFunction* _getMinAndMaxLocalCoords,
+ FieldVariable_GetCoordFunction* _getMinAndMaxGlobalCoords,
+ FeVariable_InterpolateWithinElementFunction* _interpolateWithinElement,
+ FeVariable_GetValueAtNodeFunction* _getValueAtNode,
+ ParticleFeVariable_ValueAtParticleFunction* _valueAtParticle,
+ Name name )
+{
+ ViscosityField* self;
+
+ /* Call private constructor of parent - this will set virtual functions of parent and continue up the hierarchy tree. At the beginning of the tree it will allocate memory of the size of object and initialise all the memory to zero. */
+ assert( _sizeOfSelf >= sizeof(ViscosityField) );
+ self = (ViscosityField*)
+ _ParticleFeVariable_New(
+ _sizeOfSelf,
+ type,
+ _delete,
+ _print,
+ _copy,
+ _defaultConstructor,
+ _construct,
+ _build,
+ _initialise,
+ _execute,
+ _destroy,
+ _interpolateValueAt,
+ _getMinGlobalFeMagnitude,
+ _getMaxGlobalFeMagnitude,
+ _getMinAndMaxLocalCoords,
+ _getMinAndMaxGlobalCoords,
+ _interpolateWithinElement,
+ _getValueAtNode,
+ _valueAtParticle,
+ name );
+
+ return self;
+}
+
+void _ViscosityField_Init(
+ ViscosityField* self,
+ ConstitutiveMatrix* constitutiveMatrix,
+ Variable_Register* variable_Register )
+{
+ Name tmpName;
+
+ /* Assign Pointers */
+ self->constitutiveMatrix = constitutiveMatrix;
+
+ /* Create Dof Layout */
+ tmpName = Stg_Object_AppendSuffix( self, "DataVariable" );
+ self->dataVariable = Variable_NewScalar(
+ tmpName,
+ Variable_DataType_Double,
+ &self->feMesh->nodeDomainCount,
+ (void**)&self->data,
+ variable_Register );
+ Memory_Free( tmpName );
+ self->fieldComponentCount = 1;
+
+ tmpName = Stg_Object_AppendSuffix( self, "DofLayout" );
+ self->dofLayout = DofLayout_New( tmpName, variable_Register, self->feMesh->layout->decomp->nodeDomainCount );
+ DofLayout_AddAllFromVariableArray( self->dofLayout, 1, &self->dataVariable );
+ Memory_Free( tmpName );
+ self->eqNum->dofLayout = self->dofLayout;
+
+
+ /* Set pointers to swarm to be the same as the one on the constitutive matrix */
+ self->assemblyTerm->integrationSwarm = self->constitutiveMatrix->integrationSwarm;
+ self->massMatrixForceTerm->integrationSwarm = self->constitutiveMatrix->integrationSwarm;
+}
+
+/* --- Virtual Function Implementations --- */
+void _ViscosityField_Delete( void* viscosityField ) {
+ ViscosityField* self = (ViscosityField*) viscosityField;
+
+ Stg_Class_Delete( self->assemblyVector );
+ Memory_Free( self->assemblyVectorName );
+
+ _FeVariable_Delete( self );
+}
+
+void _ViscosityField_Print( void* viscosityField, Stream* stream ) {
+ ViscosityField* self = (ViscosityField*) viscosityField;
+
+ /* General info */
+ Journal_Printf( stream, "ViscosityField (ptr): %p\n", self );
+
+ /* Print parent */
+ _FeVariable_Print( self, stream );
+
+ /* ViscosityField info */
+ Journal_PrintPointer( stream, self->constitutiveMatrix );
+}
+
+
+void* _ViscosityField_Copy( void* feVariable, void* dest, Bool deep, Name nameExt, PtrMap* ptrMap ) {
+ ViscosityField* self = (ViscosityField*)feVariable;
+ ViscosityField* newViscosityField;
+
+ newViscosityField = (ViscosityField*) _FeVariable_Copy( feVariable, dest, deep, nameExt, ptrMap );
+
+ newViscosityField->constitutiveMatrix = self->constitutiveMatrix;
+
+ return (void*)newViscosityField;
+}
+
+void* _ViscosityField_DefaultNew( Name name ) {
+ return (void*) _ViscosityField_New(
+ sizeof(ViscosityField),
+ ViscosityField_Type,
+ _ViscosityField_Delete,
+ _ViscosityField_Print,
+ _ViscosityField_Copy,
+ _ViscosityField_DefaultNew,
+ _ViscosityField_Construct,
+ _ViscosityField_Build,
+ _ViscosityField_Initialise,
+ _ViscosityField_Execute,
+ _ViscosityField_Destroy,
+ _FeVariable_InterpolateValueAt,
+ _FeVariable_GetMinGlobalFieldMagnitude,
+ _FeVariable_GetMaxGlobalFieldMagnitude,
+ _FeVariable_GetMinAndMaxLocalCoords,
+ _FeVariable_GetMinAndMaxGlobalCoords,
+ _FeVariable_InterpolateNodeValuesToElLocalCoord,
+ _FeVariable_GetValueAtNode,
+ _ViscosityField_ValueAtParticle,
+ name );
+}
+
+void _ViscosityField_Construct( void* viscosityField, Stg_ComponentFactory* cf ){
+ ViscosityField* self = (ViscosityField*) viscosityField;
+ ConstitutiveMatrix* constitutiveMatrix;
+ Variable_Register* variable_Register;
+
+ constitutiveMatrix = Stg_ComponentFactory_ConstructByKey( cf, self->name, "ConstitutiveMatrix", ConstitutiveMatrix, True );
+ variable_Register = (Variable_Register*) Stg_ObjectList_Get( cf->registerRegister, "Variable_Register" );
+ assert( variable_Register );
+
+ /* Construct Parent */
+ _ParticleFeVariable_Construct( self, cf );
+
+ _FieldVariable_Construct( self, cf );
+
+ _ViscosityField_Init( self, constitutiveMatrix, variable_Register );
+}
+
+void _ViscosityField_Build( void* viscosityField, void* data ) {
+ ViscosityField* self = (ViscosityField*) viscosityField;
+
+ _ParticleFeVariable_Build( self, data );
+}
+void _ViscosityField_Initialise( void* viscosityField, void* data ) {
+ ViscosityField* self = (ViscosityField*) viscosityField;
+
+ _ParticleFeVariable_Initialise( self, data );
+}
+void _ViscosityField_Execute( void* viscosityField, void* data ) {
+ ViscosityField* self = (ViscosityField*) viscosityField;
+
+ _ParticleFeVariable_Execute( self, data );
+}
+void _ViscosityField_Destroy( void* viscosityField, void* data ) {
+ ViscosityField* self = (ViscosityField*) viscosityField;
+
+ _ParticleFeVariable_Destroy( self, data );
+}
+void _ViscosityField_ValueAtParticle( void* viscosityField, IntegrationPointsSwarm* swarm, Element_LocalIndex lElement_I, void* _particle, double* viscosity ) {
+ ViscosityField* self = (ViscosityField*) viscosityField;
+ IntegrationPoint* particle = (IntegrationPoint*) _particle;
+
+ /* Calculate viscosity from constitutive matrix */
+ ConstitutiveMatrix_Assemble( self->constitutiveMatrix, lElement_I, particle );
+ *viscosity = ConstitutiveMatrix_GetIsotropicViscosity( self->constitutiveMatrix );
+}
+
Added: long/3D/Gale/trunk/src/Underworld/Utils/src/ViscosityField.h
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Utils/src/ViscosityField.h 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/Utils/src/ViscosityField.h 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,66 @@
+/*~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+**
+** Monash Cluster Computing, Australia
+** (C) 2003-2004 All Rights Reserved
+**
+** Primary Authors:
+** Robert Turnbull, MCC
+**
+**~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~*/
+
+#ifndef __Underworld_MaterialPoints_ViscosityField_h__
+#define __Underworld_MaterialPoints_ViscosityField_h__
+
+ /** Textual name of this class - This is a global pointer which is used for times when you need to refer to class and not a particular instance of a class */
+ extern const Type ViscosityField_Type;
+
+ /** ViscosityField class contents - this is defined as a macro so that sub-classes of this class can use this macro at the start of the definition of their struct */
+ #define __ViscosityField \
+ /* Macro defining parent goes here - This means you can cast this class as its parent */ \
+ __ParticleFeVariable \
+ \
+ /* Virtual functions go here */ \
+ \
+ /* Passed in parameters */ \
+ ConstitutiveMatrix* constitutiveMatrix; \
+
+ struct ViscosityField { __ViscosityField };
+
+ /* --- Contstructors / Destructors --- */
+ ViscosityField* _ViscosityField_New(
+ SizeT _sizeOfSelf,
+ Type type,
+ Stg_Class_DeleteFunction* _delete,
+ Stg_Class_PrintFunction* _print,
+ Stg_Class_CopyFunction* _copy,
+ Stg_Component_DefaultConstructorFunction* _defaultConstructor,
+ Stg_Component_ConstructFunction* _construct,
+ Stg_Component_BuildFunction* _build,
+ Stg_Component_InitialiseFunction* _initialise,
+ Stg_Component_ExecuteFunction* _execute,
+ Stg_Component_DestroyFunction* _destroy,
+ FieldVariable_InterpolateValueAtFunction* _interpolateValueAt,
+ FieldVariable_GetValueFunction* _getMinGlobalFeMagnitude,
+ FieldVariable_GetValueFunction* _getMaxGlobalFeMagnitude,
+ FieldVariable_GetCoordFunction* _getMinAndMaxLocalCoords,
+ FieldVariable_GetCoordFunction* _getMinAndMaxGlobalCoords,
+ FeVariable_InterpolateWithinElementFunction* _interpolateWithinElement,
+ FeVariable_GetValueAtNodeFunction* _getValueAtNode,
+ ParticleFeVariable_ValueAtParticleFunction* _valueAtParticle,
+ Name name );
+
+ /** Print the contents of an ViscosityField construct */
+ void* _ViscosityField_DefaultNew( Name name );
+ void _ViscosityField_Delete( void* variable );
+ void _ViscosityField_Print( void* variable, Stream* stream );
+ void* _ViscosityField_Copy( void* feVariable, void* dest, Bool deep, Name nameExt, PtrMap* ptrMap );
+
+ void _ViscosityField_Construct( void* variable, Stg_ComponentFactory* cf ) ;
+ void _ViscosityField_Build( void* variable, void* data ) ;
+ void _ViscosityField_Initialise( void* variable, void* data ) ;
+ void _ViscosityField_Execute( void* variable, void* data ) ;
+ void _ViscosityField_Destroy( void* variable, void* data ) ;
+ void _ViscosityField_ValueAtParticle( void* viscosityField, IntegrationPointsSwarm* swarm, Element_LocalIndex lElement_I, void* particle, double* viscosity ) ;
+
+
+#endif
Added: long/3D/Gale/trunk/src/Underworld/Utils/src/ViscosityField.meta
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Utils/src/ViscosityField.meta 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/Utils/src/ViscosityField.meta 2006-06-30 23:42:28 UTC (rev 3908)
@@ -0,0 +1,37 @@
+<?xml version="1.0"?>
+<!DOCTYPE StGermainData SYSTEM "stgermain.dtd">
+<StGermainData xmlns="http://www.vpac.org/StGermain/XML_IO_Handler/Jun2003">
+
+<param name="Name">ViscosityField</param>
+<param name="Organisation">MCC</param>
+<param name="Project">Underworld</param>
+<param name="Location">./Underworld/Utils/src/</param>
+<param name="Project Web">http://mcc.monash.edu.au/Underworld</param>
+<param name="Copyright">Copyright (c) 2005, Monash Cluster Computing</param>
+<param name="License">http://www.opensource.org/licenses/bsd-license.php</param>
+<param name="Parent">ParticleFeVariable</param>
+<param name="Description">...</param>
+
+<!--Now the interesting stuff-->
+
+
+<list name="Params">
+
+</list>
+
+<list name="Dependencies">
+ <struct>
+ <param name="Essential">True</param>
+ <param name="Name">ConstitutiveMatrix</param>
+ <param name="Type">ConstitutiveMatrix</param>
+ <param name="Description">...</param>
+ </struct>
+
+<!-- PLEASE, check the above struct information is accurate, in line number 174 of the c file and then remove this comment afterwards -->
+
+
+</list>
+<!-- Add an exmaple XML if possible -->
+<param name="Example">...</param>
+
+</StGermainData>
Modified: long/3D/Gale/trunk/src/Underworld/Utils/src/types.h
===================================================================
--- long/3D/Gale/trunk/src/Underworld/Utils/src/types.h 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/Utils/src/types.h 2006-06-30 23:42:28 UTC (rev 3908)
@@ -49,5 +49,7 @@
typedef struct UnderworldContext UnderworldContext;
typedef struct PressureTemperatureOutput PressureTemperatureOutput;
typedef struct RadiogenicHeatingTerm RadiogenicHeatingTerm;
+ typedef struct StressField StressField;
+ typedef struct ViscosityField ViscosityField;
#endif
Modified: long/3D/Gale/trunk/src/Underworld/plugins/MaterialThermalDiffusivity/MaterialThermalDiffusivity.c
===================================================================
--- long/3D/Gale/trunk/src/Underworld/plugins/MaterialThermalDiffusivity/MaterialThermalDiffusivity.c 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/plugins/MaterialThermalDiffusivity/MaterialThermalDiffusivity.c 2006-06-30 23:42:28 UTC (rev 3908)
@@ -51,30 +51,30 @@
void Underworld_MaterialThermalDiffusivity_Setup( UnderworldContext* context ) {
AdvectionDiffusionSLE* energySLE = context->energySLE;
- IntegrationPointsSwarm* materialPoints = context->materialPoints;
+ IntegrationPointsSwarm* picIntegrationPoints = context->picIntegrationPoints;
ExtensionInfo_Index particleExtHandle;
SwarmVariable* swarmVariable;
ForceVector* residual;
AdvDiffResidualForceTerm* residualForceTerm;
assert( energySLE );
- assert( materialPoints );
+ assert( picIntegrationPoints );
/* Add Material Extension */
- particleExtHandle = ExtensionManager_Add( materialPoints->particleExtensionMgr,
+ particleExtHandle = ExtensionManager_Add( picIntegrationPoints->particleExtensionMgr,
CURR_MODULE_NAME, sizeof( double ) );
swarmVariable = Swarm_NewScalarVariable(
- materialPoints,
+ picIntegrationPoints,
"thermalDiffusivity",
- (ArithPointer) ExtensionManager_Get( materialPoints->particleExtensionMgr, 0, particleExtHandle ),
+ (ArithPointer) ExtensionManager_Get( picIntegrationPoints->particleExtensionMgr, 0, particleExtHandle ),
Variable_DataType_Double );
/* Set Pointers */
residual = energySLE->residual;
residualForceTerm = Stg_CheckType( Stg_ObjectList_At( residual->forceTermList, 0 ), AdvDiffResidualForceTerm );
residualForceTerm->diffusivityVariable = swarmVariable->variable;
- residualForceTerm->integrationSwarm = (Swarm*) materialPoints;
+ residualForceTerm->integrationSwarm = (Swarm*) picIntegrationPoints;
}
void Underworld_MaterialThermalDiffusivity_Assign( UnderworldContext* context ) {
@@ -85,7 +85,7 @@
Dictionary* dictionary;
double* materialThermalDiffusivity;
Particle_Index lParticle_I;
- IntegrationPointsSwarm* swarm = context->materialPoints;
+ IntegrationPointsSwarm* swarm = context->picIntegrationPoints;
AdvectionDiffusionSLE* energySLE = context->energySLE;
ForceVector* residual;
AdvDiffResidualForceTerm* residualForceTerm;
Modified: long/3D/Gale/trunk/src/Underworld/src/main.c
===================================================================
--- long/3D/Gale/trunk/src/Underworld/src/main.c 2006-06-30 21:52:32 UTC (rev 3907)
+++ long/3D/Gale/trunk/src/Underworld/src/main.c 2006-06-30 23:42:28 UTC (rev 3908)
@@ -133,7 +133,7 @@
/* Run (Solve) phase ------------------------------------------------------------------------------------------------*/
AbstractContext_Dump( context );
- Context_Run( context );
+ Stg_Component_Execute( context, 0 /* dummy */, False );
/* Destruct phase ---------------------------------------------------------------------------------------------------*/
Stg_Component_Destroy( context, 0 /* dummy */, False );
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