[cig-commits] r4760 - mc/3D/CitcomS/trunk/doc/manual
tan2 at geodynamics.org
tan2 at geodynamics.org
Mon Oct 9 17:41:20 PDT 2006
Author: tan2
Date: 2006-10-09 17:41:19 -0700 (Mon, 09 Oct 2006)
New Revision: 4760
Modified:
mc/3D/CitcomS/trunk/doc/manual/citcoms.lyx
Log:
Added section on visualizing HDF5 output
Modified: mc/3D/CitcomS/trunk/doc/manual/citcoms.lyx
===================================================================
--- mc/3D/CitcomS/trunk/doc/manual/citcoms.lyx 2006-10-10 00:38:19 UTC (rev 4759)
+++ mc/3D/CitcomS/trunk/doc/manual/citcoms.lyx 2006-10-10 00:41:19 UTC (rev 4760)
@@ -3600,40 +3600,56 @@
\begin_layout Standard
You will see an OpenDX
\family sans
+\series bold
Data Explorer
\family default
+\series default
window.
Click
\family sans
+\series bold
Edit Visual Programs
\family default
+\series default
and select
-\family typewriter
+\family sans
+\series bold
visRegional.net
\family default
+\series default
from the file selector.
You will see a
\family sans
+\series bold
Visual Program Editor
\family default
+\series default
window.
Then select the
\family sans
+\series bold
import
\family default
+\series default
tab in the main window and double-click on the
\family sans
+\series bold
FileSelector
\family default
+\series default
block, which will open a
\family sans
+\series bold
Control Panel
\family default
+\series default
window.
In the
\family sans
+\series bold
CitcomSImport filename
\family default
+\series default
input box, select the header file of your postprocessed data, e.g.,
\end_layout
@@ -3648,17 +3664,21 @@
\family typewriter
\family sans
+\series bold
Execute\SpecialChar \menuseparator
Execute on Change
\family default
+\series default
.
A new window will appear with the image of the model.
If you want to zoom, rotate, change projection, and otherwise manipulate
the view of the model, experiment with the menu
\family sans
+\series bold
Options\SpecialChar \menuseparator
View Control
\family default
+\series default
.
\end_layout
@@ -3696,8 +3716,10 @@
\begin_layout Itemize
\family sans
+\series bold
CitcomSImport reduced
\family default
+\series default
, can increase or reduce the resolution of the velocity vectors and grids.
\end_layout
@@ -3705,16 +3727,20 @@
\begin_layout Itemize
\family sans
+\series bold
Core radius
\family default
+\series default
is the size of the orange sphere which represents the core-mantle boundary.
\end_layout
\begin_layout Itemize
\family sans
+\series bold
Isosurface value
\family default
+\series default
is the temperature isosurfaces.
You can change the values of the isosurfaces, including adding additional
isosurfaces or deleting existing ones.
@@ -3724,8 +3750,10 @@
\begin_layout Itemize
\family sans
+\series bold
Slab cut dimension
\family default
+\series default
is the direction of the slab (an OpenDX term of cross-section).
\end_layout
@@ -3733,8 +3761,10 @@
\begin_layout Itemize
\family sans
+\series bold
Slab cut position
\family default
+\series default
is the position of the slab.
\end_layout
@@ -3754,40 +3784,56 @@
\begin_layout Standard
After launched OpenDX, You will see an OpenDX
\family sans
+\series bold
Data Explorer
\family default
+\series default
window.
Click
\family sans
+\series bold
Edit Visual Programs
\family default
+\series default
and select
-\family typewriter
+\family sans
+\series bold
visFull.net
\family default
+\series default
from the file selector.
You will see a
\family sans
+\series bold
Visual Program Editor
\family default
+\series default
window.
Then select the
\family sans
+\series bold
import
\family default
+\series default
tab in the main window and double-click on the
\family sans
+\series bold
FileSelector
\family default
+\series default
block, which will open a
\family sans
-Control Panel
+\series bold
+Control Panel
\family default
- window.
+\series default
+window.
In the
\family sans
+\series bold
Format String of CitcomSFullImport
\family default
+\series default
input box, select one of the 12 header files of your postprocessed data,
e.g.,
\end_layout
@@ -3819,17 +3865,21 @@
\family typewriter
\family sans
+\series bold
Execute\SpecialChar \menuseparator
Execute on Change
\family default
+\series default
.
A new window will appear with the image of the model.
If you want to zoom, rotate, change projection, and otherwise manipulate
the view of the model, experiment with the menu
\family sans
+\series bold
Options\SpecialChar \menuseparator
View Control
\family default
+\series default
.
\end_layout
@@ -3840,8 +3890,10 @@
\begin_layout Itemize
\family sans
+\series bold
CitcomSFullImport reduced
\family default
+\series default
, can increase or reduce the resolution of the velocity vectors and grids.
\end_layout
@@ -3849,16 +3901,20 @@
\begin_layout Itemize
\family sans
+\series bold
Core radius
\family default
+\series default
is the size of the orange sphere which represents the core-mantle boundary.
\end_layout
\begin_layout Itemize
\family sans
+\series bold
Isosurface value
\family default
+\series default
is the temperature isosurfaces.
You can change the values of the isosurfaces, including adding additional
isosurfaces or deleting existing ones.
@@ -3868,12 +3924,16 @@
\begin_layout Itemize
\family sans
+\series bold
Latitude of normal axis
\family default
+\series default
and
\family sans
+\series bold
Longitude of normal axis
\family default
+\series default
are the directions of the normal axis to the cross-section plane.
\end_layout
@@ -3882,9 +3942,113 @@
\end_layout
\begin_layout Standard
-(TODO)
+If you choose the HDF5 output format (
+\family typewriter
+solver.output.output_format=hdf5
+\family default
+), you can directly visualize the data without postprocessing.
+ First, you need to installl and setup OpenDXutils package.
+ (TODO: link to installation) Then, open either
+\family sans
+\series bold
+visRegional.net
+\family default
+\series default
+ or
+\family sans
+\series bold
+visFull.net
+\family default
+\series default
+ in OpenDX.
+ In the Tools panel of the main window, select the
+\family sans
+\series bold
+CitcomSImportHDF5
+\family default
+\series default
+ module in the
+\family sans
+\series bold
+Macros
+\family default
+\series default
+ category.
+ Place the module in the work space and rewire the network as shown in Figure
+
+\begin_inset LatexCommand \ref{fig:Import-CitComS.py-HDF5}
+
+\end_inset
+
+.
\end_layout
+\begin_layout Standard
+\begin_inset Float figure
+wide false
+sideways false
+status open
+
+\begin_layout Standard
+\begin_inset Graphics
+ filename graphics/CitcomSImportHDF5.net.gif
+ lyxscale 50
+ width 75page%
+ keepAspectRatio
+
+\end_inset
+
+
+\end_layout
+
+\begin_layout Caption
+\begin_inset LatexCommand \label{fig:Import-CitComS.py-HDF5}
+
+\end_inset
+
+Import CitComS.py HDF5 data.
+ The
+\family sans
+\series bold
+CitcomSImportHDF5
+\family default
+\series default
+ module is highlighted in the Tools panel.
+\end_layout
+
+\end_inset
+
+
+\end_layout
+
+\begin_layout Standard
+There are four input tabs in the
+\family sans
+\series bold
+CitcomSImportHDF5
+\family default
+\series default
+ module.
+ The first tab (connected to the
+\family sans
+\series bold
+FileSelector
+\family default
+\series default
+ module) specifies the HDF5 filename.
+ The second tab (connected to the
+\family sans
+\series bold
+Integer
+\family default
+\series default
+ module) specifies the resultion reduction factor.
+ The third tab (unconnected, default to 0) specifies which time frame to
+ import.
+ The fourth tab (unconnected, default to 0) specifies which cap(s) to import.
+
+\end_layout
+
\begin_layout Chapter
Cookbooks
\end_layout
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