[cig-commits] r4792 - long/3D/Gale/trunk
walter at geodynamics.org
walter at geodynamics.org
Wed Oct 11 13:20:54 PDT 2006
Author: walter
Date: 2006-10-11 13:20:53 -0700 (Wed, 11 Oct 2006)
New Revision: 4792
Added:
long/3D/Gale/trunk/extension.xml
Removed:
long/3D/Gale/trunk/simple-extension.xml
Modified:
long/3D/Gale/trunk/
Log:
r712 at earth: boo | 2006-10-11 12:16:48 -0700
rename simple-extension to extension
Property changes on: long/3D/Gale/trunk
___________________________________________________________________
Name: svk:merge
- 3a629746-de10-0410-b17b-fd6ecaaa963e:/cig:711
+ 3a629746-de10-0410-b17b-fd6ecaaa963e:/cig:712
Added: long/3D/Gale/trunk/extension.xml
===================================================================
--- long/3D/Gale/trunk/extension.xml 2006-10-11 20:20:51 UTC (rev 4791)
+++ long/3D/Gale/trunk/extension.xml 2006-10-11 20:20:53 UTC (rev 4792)
@@ -0,0 +1,602 @@
+<?xml version="1.0"?>
+<StGermainData xmlns="http://www.vpac.org/StGermain/XML_IO_Handler/Jun2003">
+ <struct name="components">
+ <struct name="geometry">
+ <param name="Type">MeshGeometry</param>
+ <param name="mesh">mesh-linear</param>
+ <param name="decomp">decomp-linear</param>
+ <param name="sizeI">elementResI</param>
+ <param name="sizeJ">elementResJ</param>
+ <param name="sizeK">elementResK</param>
+ <param name="sizeShift">+1</param>
+ </struct>
+ <struct name="elementTopology">
+ <param name="Type">IJK26Topology</param>
+ <param name="sizeI">elementResI</param>
+ <param name="sizeJ">elementResJ</param>
+ <param name="sizeK">elementResK</param>
+ </struct>
+ <struct name="elementLayout">
+ <param name="Type">HexaEL</param>
+ <param name="Topology">elementTopology</param>
+ <param name="Geometry">geometry</param>
+ </struct>
+ <struct name="bodyNodeTopology">
+ <param name="Type">IJK6Topology</param>
+ <param name="sizeI">elementResI</param>
+ <param name="sizeJ">elementResJ</param>
+ <param name="sizeK">elementResK</param>
+ </struct>
+ <struct name="bodyNodeLayout">
+ <param name="Type">BodyNL</param>
+ <param name="ElementLayout">elementLayout</param>
+ <param name="Topology">bodyNodeTopology</param>
+ </struct>
+ <struct name="decomp-constant">
+ <param name="Type">HexaMD</param>
+ <param name="ElementLayout">elementLayout</param>
+ <param name="NodeLayout">bodyNodeLayout</param>
+ <param name="numPartitionedDims">numPartitionedDims</param>
+ </struct>
+ <struct name="meshLayout-constant">
+ <param name="Type">MeshLayout</param>
+ <param name="ElementLayout">elementLayout</param>
+ <param name="NodeLayout">bodyNodeLayout</param>
+ <param name="MeshDecomp">decomp-constant</param>
+ </struct>
+ <struct name="mesh-constant">
+ <param name="Type">FiniteElement_Mesh</param>
+ <param name="MeshLayout">meshLayout-constant</param>
+ <param name="ElementSize">8</param>
+ <param name="NodeSize">0</param>
+ </struct>
+ <struct name="cornerNodeTopology">
+ <param name="Type">IJK6Topology</param>
+ <param name="sizeI">elementResI</param>
+ <param name="sizeJ">elementResJ</param>
+ <param name="sizeK">elementResK</param>
+ <param name="sizeShift">1</param>
+ </struct>
+ <struct name="cornerNodeLayout">
+ <param name="Type">CornerNL</param>
+ <param name="ElementLayout">elementLayout</param>
+ <param name="Topology">cornerNodeTopology</param>
+ </struct>
+ <struct name="decomp-linear">
+ <param name="Type">HexaMD</param>
+ <param name="ElementLayout">elementLayout</param>
+ <param name="NodeLayout">cornerNodeLayout</param>
+ <param name="numPartitionedDims">numPartitionedDims</param>
+ </struct>
+ <struct name="meshLayout-linear">
+ <param name="Type">MeshLayout</param>
+ <param name="ElementLayout">elementLayout</param>
+ <param name="NodeLayout">cornerNodeLayout</param>
+ <param name="MeshDecomp">decomp-linear</param>
+ </struct>
+ <struct name="mesh-linear">
+ <param name="Type">FiniteElement_Mesh</param>
+ <param name="MeshLayout">meshLayout-linear</param>
+ <param name="ElementSize">8</param>
+ <param name="NodeSize">0</param>
+ </struct>
+ <struct name="velocity">
+ <param name="Type">Variable</param>
+ <param name="Rank">Vector</param>
+ <param name="Dependency">decomp-linear</param>
+ <param name="DataType">Double</param>
+ <param name="Count">decomp-linear-nodeDomainCount</param>
+ <param name="VectorComponentCount">dim</param>
+ <list name="names">
+ <param>vx</param>
+ <param>vy</param>
+ <param>vz</param>
+ </list>
+ </struct>
+ <struct name="velocityBCs">
+ <param name="Type">CompositeVC</param>
+ <param name="Data">mesh-linear</param>
+ </struct>
+ <struct name="velocityICs">
+ <param name="Type">CompositeVC</param>
+ <param name="Data">mesh-linear</param>
+ </struct>
+ <struct name="velocityDofLayout">
+ <param name="Type">DofLayout</param>
+ <param name="Count">decomp-linear-nodeDomainCount</param>
+ <param name="BaseVariableCount">dim</param>
+ <list name="BaseVariables">
+ <param>vx</param>
+ <param>vy</param>
+ <param>vz</param>
+ </list>
+ </struct>
+ <struct name="VelocityField">
+ <param name="Type">FeVariable</param>
+ <param name="FEMesh">mesh-linear</param>
+ <param name="DofLayout">velocityDofLayout</param>
+ <param name="BC">velocityBCs</param>
+ <param name="IC">velocityICs</param>
+ <param name="LinkedDofInfo">velocityLinkedDofs</param>
+ </struct>
+ <struct name="VelocityMagnitudeField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">Magnitude</param>
+ <param name="FeVariable">VelocityField</param>
+ </struct>
+ <struct name="VelocityGradientsField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">Gradient</param>
+ <param name="FeVariable">VelocityField</param>
+ </struct>
+ <struct name="VelocityXXField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TakeFirstComponent</param>
+ <param name="FeVariable">VelocityField</param>
+ </struct>
+ <struct name="VelocityYYField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TakeSecondComponent</param>
+ <param name="FeVariable">VelocityField</param>
+ </struct>
+ <struct name="StrainRateField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TensorSymmetricPart</param>
+ <param name="FeVariable">VelocityGradientsField</param>
+ </struct>
+ <struct name="VorticityField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TensorAntisymmetricPart</param>
+ <param name="FeVariable">VelocityGradientsField</param>
+ </struct>
+ <struct name="StrainRateInvariantField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">SymmetricTensor_Invariant</param>
+ <param name="FeVariable">StrainRateField</param>
+ </struct>
+ <struct name="StrainRateXXField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TakeFirstComponent</param>
+ <param name="FeVariable">StrainRateField</param>
+ </struct>
+ <struct name="StrainRateYYField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TakeSecondComponent</param>
+ <param name="FeVariable">StrainRateField</param>
+ </struct>
+ <struct name="pressure">
+ <param name="Type">Variable</param>
+ <param name="Rank">Scalar</param>
+ <param name="Dependency">decomp-constant</param>
+ <param name="DataType">Double</param>
+ <param name="Count">decomp-constant-nodeDomainCount</param>
+ </struct>
+ <struct name="pressureDofLayout">
+ <param name="Type">DofLayout</param>
+ <param name="Count">decomp-constant-nodeDomainCount</param>
+ <list name="BaseVariables">
+ <param>pressure</param>
+ </list>
+ </struct>
+ <struct name="PressureField">
+ <param name="Type">FeVariable</param>
+ <param name="FEMesh">mesh-constant</param>
+ <param name="GeometryMesh">mesh-linear</param>
+ <param name="DofLayout">pressureDofLayout</param>
+ <param name="LinkedDofInfo">pressureLinkedDofs</param>
+ </struct>
+ <struct name="cellLayout">
+ <param name="Type">SingleCellLayout</param>
+ </struct>
+ <struct name="particleLayout">
+ <param name="Type">GaussParticleLayout</param>
+ </struct>
+ <struct name="gaussSwarm">
+ <param name="Type">IntegrationPointsSwarm</param>
+ <param name="CellLayout">cellLayout</param>
+ <param name="ParticleLayout">particleLayout</param>
+ <param name="FiniteElement_Mesh">mesh-linear</param>
+ <param name="TimeIntegrator">timeIntegrator</param>
+ <param name="IntegrationPointMapper">gaussMapper</param>
+ </struct>
+ <struct name="gaussMapper">
+ <param name="Type">GaussMapper</param>
+ <param name="IntegrationPointsSwarm">gaussSwarm</param>
+ <param name="MaterialPointsSwarm">gaussMaterialSwarm</param>
+ </struct>
+ <struct name="backgroundLayout">
+ <param name="Type">BackgroundParticleLayout</param>
+ </struct>
+ <struct name="gaussMaterialSwarm">
+ <param name="Type">MaterialPointsSwarm</param>
+ <param name="CellLayout">cellLayout</param>
+ <param name="ParticleLayout">backgroundLayout</param>
+ <param name="FiniteElement_Mesh">mesh-linear</param>
+ </struct>
+ <struct name="timeIntegrator">
+ <param name="Type">TimeIntegrator</param>
+ <param name="order">1</param>
+ <param name="simultaneous">t</param>
+ <param name="Context">context</param>
+ </struct>
+ <struct name="elementCellLayout">
+ <param name="Type">ElementCellLayout</param>
+ <param name="Mesh">mesh-linear</param>
+ </struct>
+ <struct name="discreteVoronoi">
+ <param name="Type">CellularAutomataVoronoi</param>
+ <param name="resolution">10</param>
+ <param name="diagonalNeighbours">true</param>
+ </struct>
+ <struct name="weights">
+ <param name="Type">DiscreteVoronoiWeights</param>
+ <param name="DiscreteVoronoi">discreteVoronoi</param>
+ </struct>
+ <struct name="localLayout">
+ <param name="Type">MappedParticleLayout</param>
+ </struct>
+ <struct name="picIntegrationPoints">
+ <param name="Type">IntegrationPointsSwarm</param>
+ <param name="CellLayout">elementCellLayout</param>
+ <param name="ParticleLayout">localLayout</param>
+ <param name="FiniteElement_Mesh">mesh-linear</param>
+ <param name="WeightsCalculator">weights</param>
+ <param name="TimeIntegrator">timeIntegrator</param>
+ <param name="IntegrationPointMapper">mapper</param>
+ </struct>
+ <struct name="mapper">
+ <param name="Type">CoincidentMapper</param>
+ <param name="IntegrationPointsSwarm">picIntegrationPoints</param>
+ <param name="MaterialPointsSwarm">materialSwarm</param>
+ </struct>
+ <struct name="materialSwarmParticleLayout">
+ <param name="Type">SpaceFillerParticleLayout</param>
+ <param name="averageInitialParticlesPerCell">particlesPerCell</param>
+ </struct>
+ <struct name="materialSwarm">
+ <param name="Type">MaterialPointsSwarm</param>
+ <param name="CellLayout">elementCellLayout</param>
+ <param name="ParticleLayout">materialSwarmParticleLayout</param>
+ <param name="FiniteElement_Mesh">mesh-linear</param>
+ <param name="SplittingRoutine">splittingRoutine</param>
+ <param name="RemovalRoutine">removalRoutine</param>
+ <param name="EscapedRoutine">escapedRoutine</param>
+ </struct>
+ <struct name="materialSwarmAdvector">
+ <param name="Type">SwarmAdvector</param>
+ <param name="Swarm">materialSwarm</param>
+ <param name="TimeIntegrator">timeIntegrator</param>
+ <param name="VelocityField">VelocityField</param>
+ <param name="PeriodicBCsManager">periodicBCsManager</param>
+ <param name="allowFallbackToFirstOrder">True</param>
+ </struct>
+ <struct name="removalRoutine">
+ <param name="Type">DiscreteVoronoiRemove</param>
+ <param name="idealParticleCount">particlesPerCell</param>
+ <param name="DiscreteVoronoi">discreteVoronoi</param>
+ </struct>
+ <struct name="splittingRoutine">
+ <param name="Type">ReseedSplitting</param>
+ <param name="idealParticleCount">particlesPerCell</param>
+ <param name="DiscreteVoronoi">discreteVoronoi</param>
+ </struct>
+ <struct name="solutionVelocity">
+ <param name="Type">SolutionVector</param>
+ <param name="FeVariable">VelocityField</param>
+ </struct>
+ <struct name="solutionPressure">
+ <param name="Type">SolutionVector</param>
+ <param name="FeVariable">PressureField</param>
+ </struct>
+ <struct name="mom_force">
+ <param name="Type">ForceVector</param>
+ <param name="FeVariable">VelocityField</param>
+ <param name="ExtraInfo">context</param>
+ </struct>
+ <struct name="cont_force">
+ <param name="Type">ForceVector</param>
+ <param name="FeVariable">PressureField</param>
+ <param name="ExtraInfo">context</param>
+ </struct>
+ <struct name="k_matrix">
+ <param name="Type">StiffnessMatrix</param>
+ <param name="RowVariable">VelocityField</param>
+ <param name="ColumnVariable">VelocityField</param>
+ <param name="RHS">mom_force</param>
+ <param name="allowZeroElementContributions">False</param>
+ </struct>
+ <struct name="constitutiveMatrix">
+ <param name="Type">ConstitutiveMatrixCartesian</param>
+ <param name="Swarm">picIntegrationPoints</param>
+ <param name="StiffnessMatrix">k_matrix</param>
+ </struct>
+ <struct name="g_matrix">
+ <param name="Type">StiffnessMatrix</param>
+ <param name="RowVariable">VelocityField</param>
+ <param name="ColumnVariable">PressureField</param>
+ <param name="RHS">cont_force</param>
+ <param name="allowZeroElementContributions">False</param>
+ </struct>
+ <struct name="gradientStiffnessMatrixTerm">
+ <param name="Type">GradientStiffnessMatrixTerm</param>
+ <param name="Swarm">gaussSwarm</param>
+ <param name="StiffnessMatrix">g_matrix</param>
+ </struct>
+ <struct name="preconditioner">
+ <param name="Type">StiffnessMatrix</param>
+ <param name="RowVariable">PressureField</param>
+ <param name="ColumnVariable">PressureField</param>
+ <param name="RHS">cont_force</param>
+ <param name="allowZeroElementContributions">True</param>
+ </struct>
+ <struct name="preconditionerTerm">
+ <param name="Type">UzawaPreconditionerTerm</param>
+ <param name="Swarm">picIntegrationPoints</param>
+ <param name="StiffnessMatrix">preconditioner</param>
+ </struct>
+ <struct name="uzawa">
+ <param name="Type">Stokes_SLE_UzawaSolver</param>
+ <param name="Preconditioner">preconditioner</param>
+ <param name="tolerance">1.0e-5</param>
+ <param name="maxIterations">5000</param>
+ </struct>
+ <struct name="stokesEqn">
+ <param name="Type">Stokes_SLE</param>
+ <param name="SLE_Solver">uzawa</param>
+ <param name="Context">context</param>
+ <param name="StressTensorMatrix">k_matrix</param>
+ <param name="GradientMatrix">g_matrix</param>
+ <param name="DivergenceMatrix"></param>
+ <param name="CompressibilityMatrix">c_matrix</param>
+ <param name="VelocityVector">solutionVelocity</param>
+ <param name="PressureVector">solutionPressure</param>
+ <param name="ForceVector">mom_force</param>
+ <param name="ContinuityForceVector">cont_force</param>
+ <param name="killNonConvergent">false</param>
+ <param name="nonLinearMaxIterations">nonLinearMaxIterations</param>
+ <param name="nonLinearTolerance">nonLinearTolerance</param>
+ </struct>
+ <struct name="backgroundShape">
+ <param name="Type">Everywhere</param>
+ </struct>
+ <struct name="pdmsShape">
+ <param name="Type">Box</param>
+ <param name="startX">0.5</param>
+ <param name="endX">1.5</param>
+ <param name="startY">0.0</param>
+ <param name="endY">0.05</param>
+ <param name="startZ">minZ</param>
+ <param name="endZ">maxZ</param>
+ </struct>
+ <struct name="stripShape">
+ <param name="Type">Box</param>
+ <param name="startX">minX</param>
+ <param name="endX">maxX</param>
+ <param name="startY">0.15</param>
+ <param name="endY">0.25</param>
+ <param name="startZ">minZ</param>
+ <param name="endZ">maxZ</param>
+ </struct>
+ <struct name="crustShape">
+ <param name="Type">Intersection</param>
+ <list name="shapes">
+ <param>backgroundShape</param>
+ <param>!pdmsShape</param>
+ <param>!stripShape</param>
+ </list>
+ </struct>
+ <struct name="crustViscosity">
+ <param name="Type">MaterialViscosity</param>
+ <param name="eta0">10.0</param>
+ </struct>
+ <struct name="strainWeakening">
+ <param name="Type">StrainWeakening</param>
+ <param name="TimeIntegrator">timeIntegrator</param>
+ <param name="MaterialPointsSwarm">materialSwarm</param>
+ <param name="softeningStrain">0.1</param>
+ <param name="initialDamageFraction">0.0</param>
+ <param name="initialDamageWavenumber">0.5</param>
+ <param name="initialDamageFactor">0.5</param>
+ <param name="healingRate">0.0</param>
+ </struct>
+ <struct name="yielding">
+ <param name="Type">MohrCoulomb</param>
+ <param name="PressureField">PressureField</param>
+ <param name="VelocityGradientsField">VelocityGradientsField</param>
+ <param name="MaterialPointsSwarm">materialSwarm</param>
+ <param name="Context">context</param>
+ <param name="StrainWeakening">strainWeakening</param>
+ <param name="cohesion">10.0</param>
+ <param name="cohesionAfterSoftening">0.0001</param>
+ <param name="frictionCoefficient">0.0</param>
+ <param name="frictionCoefficientAfterSoftening">0.0</param>
+ <param name="minimumYieldStress">0.00001</param>
+ </struct>
+ <struct name="pdmsViscosity">
+ <param name="Type">MaterialViscosity</param>
+ <param name="eta0">1.0</param>
+ </struct>
+ <struct name="storeViscosity">
+ <param name="Type">StoreVisc</param>
+ <param name="MaterialPointsSwarm">materialSwarm</param>
+ </struct>
+ <struct name="crust">
+ <param name="Type">RheologyMaterial</param>
+ <param name="Shape">crustShape</param>
+ <list name="Rheology">
+ <param>crustViscosity</param>
+ <param>yielding</param>
+ <param>storeViscosity</param>
+ </list>
+ </struct>
+ <struct name="strip">
+ <param name="Type">RheologyMaterial</param>
+ <param name="Shape">stripShape</param>
+ <list name="Rheology">
+ <param>crustViscosity</param>
+ <param>yielding</param>
+ <param>storeViscosity</param>
+ </list>
+ </struct>
+ <struct name="pdms">
+ <param name="Type">RheologyMaterial</param>
+ <param name="Shape">pdmsShape</param>
+ <list name="Rheology">
+ <param>pdmsViscosity</param>
+ <param>storeViscosity</param>
+ </list>
+ </struct>
+ <struct name="escapedRoutine">
+ <param name="Type">EscapedRoutine</param>
+ <param name="idealParticleCount">0</param>
+ </struct>
+ <struct name="velocityRemesher">
+ <param name="Type">StripRemesher</param>
+ <param name="mesh">mesh-linear</param>
+ <param name="meshType">regular</param>
+ <list name="dims">
+ <param>true</param>
+ <param>true</param>
+ <param>true</param>
+ </list>
+ </struct>
+ <struct name="pressureRemesher">
+ <param name="Type">CellRemesher</param>
+ <param name="mesh">mesh-constant</param>
+ <param name="meshType">regular</param>
+ <param name="dims">3</param>
+ <param name="cellMesh">mesh-linear</param>
+ </struct>
+ </struct>
+ <list name="plugins">
+ <param>StG_FEM_StandardConditionFunctions</param>
+ <param>Underworld_EulerDeform</param>
+ <param>Underworld_DumpSwarm</param>
+ </list>
+ <param name="journal-level.info.Stg_ComponentFactory">1</param>
+ <param name="journal.debug">True</param>
+ <param name="journal-enable-branch.debug.StG_FEM">True</param>
+ <param name="journal-level-branch.debug.StG_FEM">1</param>
+ <param name="maxTimeSteps">500</param>
+ <param name="outputEvery">1</param>
+ <param name="dumpEvery">1</param>
+ <param name="outputPath">./output.sandbox</param>
+ <param name="dim">2</param>
+ <param name="shadowDepth">1</param>
+ <param name="minX">0.0f</param>
+ <param name="minY">0.0f</param>
+ <param name="minZ">0.0f</param>
+ <param name="maxX">2.0f</param>
+ <param name="maxY">0.35f</param>
+ <param name="maxZ">1.0f</param>
+ <param name="elementResI">32</param>
+ <param name="elementResJ">16</param>
+ <param name="elementResK">4</param>
+ <param name="allowUnbalancing">True</param>
+ <param name="buildNodeNeighbourTbl">True</param>
+ <param name="buildElementNeighbourTbl">True</param>
+ <param name="gaussParticlesX">2</param>
+ <param name="gaussParticlesY">2</param>
+ <param name="gaussParticlesZ">2</param>
+ <param name="particlesPerCell">30</param>
+ <param name="cellParticleCount">30</param>
+ <param name="seed">13</param>
+ <struct name="EulerDeform">
+ <list name="systems">
+ <struct>
+ <param name="mesh">mesh-constant</param>
+ <param name="remesher">pressureRemesher</param>
+ <param name="velocityField">VelocityField</param>
+ <list name="fields">
+ <struct>
+ <param name="field">PressureField</param>
+ <param name="variable">pressure</param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="mesh">mesh-linear</param>
+ <param name="remesher">velocityRemesher</param>
+ <param name="velocityField">VelocityField</param>
+ <param name="wrapTop">True</param>
+ <list name="fields">
+ <struct>
+ <param name="field">VelocityField</param>
+ <param name="variable">velocity</param>
+ </struct>
+ </list>
+ </struct>
+ </list>
+ </struct>
+ <struct name="velocityBCs">
+ <param name="type">CompositeVC</param>
+ <list name="vcList">
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">front</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vz</param>
+ <param name="type">double</param>
+ <param name="value">0</param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">back</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vz</param>
+ <param name="type">double</param>
+ <param name="value">0</param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">left</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vx</param>
+ <param name="type">double</param>
+ <param name="value">0.0</param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">right</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vx</param>
+ <param name="type">double</param>
+ <param name="value">1.0</param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">bottom</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vy</param>
+ <param name="type">double</param>
+ <param name="value">0</param>
+ </struct>
+ <struct>
+ <param name="name">vx</param>
+ <param name="type">func</param>
+ <param name="value">StepFunction</param>
+ </struct>
+ </list>
+ </struct>
+ </list>
+ </struct>
+ <param name="StepFunctionOffset">1.0</param>
+ <param name="StepFunctionValue">1.0</param>
+ <param name="StepFunctionDim">0</param>
+ <param name="StepFunctionLessThan">False</param>
+ <param name="interactive">t</param>
+ <param name="checkpointEvery">1</param>
+</StGermainData>
Deleted: long/3D/Gale/trunk/simple-extension.xml
===================================================================
--- long/3D/Gale/trunk/simple-extension.xml 2006-10-11 20:20:51 UTC (rev 4791)
+++ long/3D/Gale/trunk/simple-extension.xml 2006-10-11 20:20:53 UTC (rev 4792)
@@ -1,602 +0,0 @@
-<?xml version="1.0"?>
-<StGermainData xmlns="http://www.vpac.org/StGermain/XML_IO_Handler/Jun2003">
- <struct name="components">
- <struct name="geometry">
- <param name="Type">MeshGeometry</param>
- <param name="mesh">mesh-linear</param>
- <param name="decomp">decomp-linear</param>
- <param name="sizeI">elementResI</param>
- <param name="sizeJ">elementResJ</param>
- <param name="sizeK">elementResK</param>
- <param name="sizeShift">+1</param>
- </struct>
- <struct name="elementTopology">
- <param name="Type">IJK26Topology</param>
- <param name="sizeI">elementResI</param>
- <param name="sizeJ">elementResJ</param>
- <param name="sizeK">elementResK</param>
- </struct>
- <struct name="elementLayout">
- <param name="Type">HexaEL</param>
- <param name="Topology">elementTopology</param>
- <param name="Geometry">geometry</param>
- </struct>
- <struct name="bodyNodeTopology">
- <param name="Type">IJK6Topology</param>
- <param name="sizeI">elementResI</param>
- <param name="sizeJ">elementResJ</param>
- <param name="sizeK">elementResK</param>
- </struct>
- <struct name="bodyNodeLayout">
- <param name="Type">BodyNL</param>
- <param name="ElementLayout">elementLayout</param>
- <param name="Topology">bodyNodeTopology</param>
- </struct>
- <struct name="decomp-constant">
- <param name="Type">HexaMD</param>
- <param name="ElementLayout">elementLayout</param>
- <param name="NodeLayout">bodyNodeLayout</param>
- <param name="numPartitionedDims">numPartitionedDims</param>
- </struct>
- <struct name="meshLayout-constant">
- <param name="Type">MeshLayout</param>
- <param name="ElementLayout">elementLayout</param>
- <param name="NodeLayout">bodyNodeLayout</param>
- <param name="MeshDecomp">decomp-constant</param>
- </struct>
- <struct name="mesh-constant">
- <param name="Type">FiniteElement_Mesh</param>
- <param name="MeshLayout">meshLayout-constant</param>
- <param name="ElementSize">8</param>
- <param name="NodeSize">0</param>
- </struct>
- <struct name="cornerNodeTopology">
- <param name="Type">IJK6Topology</param>
- <param name="sizeI">elementResI</param>
- <param name="sizeJ">elementResJ</param>
- <param name="sizeK">elementResK</param>
- <param name="sizeShift">1</param>
- </struct>
- <struct name="cornerNodeLayout">
- <param name="Type">CornerNL</param>
- <param name="ElementLayout">elementLayout</param>
- <param name="Topology">cornerNodeTopology</param>
- </struct>
- <struct name="decomp-linear">
- <param name="Type">HexaMD</param>
- <param name="ElementLayout">elementLayout</param>
- <param name="NodeLayout">cornerNodeLayout</param>
- <param name="numPartitionedDims">numPartitionedDims</param>
- </struct>
- <struct name="meshLayout-linear">
- <param name="Type">MeshLayout</param>
- <param name="ElementLayout">elementLayout</param>
- <param name="NodeLayout">cornerNodeLayout</param>
- <param name="MeshDecomp">decomp-linear</param>
- </struct>
- <struct name="mesh-linear">
- <param name="Type">FiniteElement_Mesh</param>
- <param name="MeshLayout">meshLayout-linear</param>
- <param name="ElementSize">8</param>
- <param name="NodeSize">0</param>
- </struct>
- <struct name="velocity">
- <param name="Type">Variable</param>
- <param name="Rank">Vector</param>
- <param name="Dependency">decomp-linear</param>
- <param name="DataType">Double</param>
- <param name="Count">decomp-linear-nodeDomainCount</param>
- <param name="VectorComponentCount">dim</param>
- <list name="names">
- <param>vx</param>
- <param>vy</param>
- <param>vz</param>
- </list>
- </struct>
- <struct name="velocityBCs">
- <param name="Type">CompositeVC</param>
- <param name="Data">mesh-linear</param>
- </struct>
- <struct name="velocityICs">
- <param name="Type">CompositeVC</param>
- <param name="Data">mesh-linear</param>
- </struct>
- <struct name="velocityDofLayout">
- <param name="Type">DofLayout</param>
- <param name="Count">decomp-linear-nodeDomainCount</param>
- <param name="BaseVariableCount">dim</param>
- <list name="BaseVariables">
- <param>vx</param>
- <param>vy</param>
- <param>vz</param>
- </list>
- </struct>
- <struct name="VelocityField">
- <param name="Type">FeVariable</param>
- <param name="FEMesh">mesh-linear</param>
- <param name="DofLayout">velocityDofLayout</param>
- <param name="BC">velocityBCs</param>
- <param name="IC">velocityICs</param>
- <param name="LinkedDofInfo">velocityLinkedDofs</param>
- </struct>
- <struct name="VelocityMagnitudeField">
- <param name="Type">OperatorFeVariable</param>
- <param name="Operator">Magnitude</param>
- <param name="FeVariable">VelocityField</param>
- </struct>
- <struct name="VelocityGradientsField">
- <param name="Type">OperatorFeVariable</param>
- <param name="Operator">Gradient</param>
- <param name="FeVariable">VelocityField</param>
- </struct>
- <struct name="VelocityXXField">
- <param name="Type">OperatorFeVariable</param>
- <param name="Operator">TakeFirstComponent</param>
- <param name="FeVariable">VelocityField</param>
- </struct>
- <struct name="VelocityYYField">
- <param name="Type">OperatorFeVariable</param>
- <param name="Operator">TakeSecondComponent</param>
- <param name="FeVariable">VelocityField</param>
- </struct>
- <struct name="StrainRateField">
- <param name="Type">OperatorFeVariable</param>
- <param name="Operator">TensorSymmetricPart</param>
- <param name="FeVariable">VelocityGradientsField</param>
- </struct>
- <struct name="VorticityField">
- <param name="Type">OperatorFeVariable</param>
- <param name="Operator">TensorAntisymmetricPart</param>
- <param name="FeVariable">VelocityGradientsField</param>
- </struct>
- <struct name="StrainRateInvariantField">
- <param name="Type">OperatorFeVariable</param>
- <param name="Operator">SymmetricTensor_Invariant</param>
- <param name="FeVariable">StrainRateField</param>
- </struct>
- <struct name="StrainRateXXField">
- <param name="Type">OperatorFeVariable</param>
- <param name="Operator">TakeFirstComponent</param>
- <param name="FeVariable">StrainRateField</param>
- </struct>
- <struct name="StrainRateYYField">
- <param name="Type">OperatorFeVariable</param>
- <param name="Operator">TakeSecondComponent</param>
- <param name="FeVariable">StrainRateField</param>
- </struct>
- <struct name="pressure">
- <param name="Type">Variable</param>
- <param name="Rank">Scalar</param>
- <param name="Dependency">decomp-constant</param>
- <param name="DataType">Double</param>
- <param name="Count">decomp-constant-nodeDomainCount</param>
- </struct>
- <struct name="pressureDofLayout">
- <param name="Type">DofLayout</param>
- <param name="Count">decomp-constant-nodeDomainCount</param>
- <list name="BaseVariables">
- <param>pressure</param>
- </list>
- </struct>
- <struct name="PressureField">
- <param name="Type">FeVariable</param>
- <param name="FEMesh">mesh-constant</param>
- <param name="GeometryMesh">mesh-linear</param>
- <param name="DofLayout">pressureDofLayout</param>
- <param name="LinkedDofInfo">pressureLinkedDofs</param>
- </struct>
- <struct name="cellLayout">
- <param name="Type">SingleCellLayout</param>
- </struct>
- <struct name="particleLayout">
- <param name="Type">GaussParticleLayout</param>
- </struct>
- <struct name="gaussSwarm">
- <param name="Type">IntegrationPointsSwarm</param>
- <param name="CellLayout">cellLayout</param>
- <param name="ParticleLayout">particleLayout</param>
- <param name="FiniteElement_Mesh">mesh-linear</param>
- <param name="TimeIntegrator">timeIntegrator</param>
- <param name="IntegrationPointMapper">gaussMapper</param>
- </struct>
- <struct name="gaussMapper">
- <param name="Type">GaussMapper</param>
- <param name="IntegrationPointsSwarm">gaussSwarm</param>
- <param name="MaterialPointsSwarm">gaussMaterialSwarm</param>
- </struct>
- <struct name="backgroundLayout">
- <param name="Type">BackgroundParticleLayout</param>
- </struct>
- <struct name="gaussMaterialSwarm">
- <param name="Type">MaterialPointsSwarm</param>
- <param name="CellLayout">cellLayout</param>
- <param name="ParticleLayout">backgroundLayout</param>
- <param name="FiniteElement_Mesh">mesh-linear</param>
- </struct>
- <struct name="timeIntegrator">
- <param name="Type">TimeIntegrator</param>
- <param name="order">1</param>
- <param name="simultaneous">t</param>
- <param name="Context">context</param>
- </struct>
- <struct name="elementCellLayout">
- <param name="Type">ElementCellLayout</param>
- <param name="Mesh">mesh-linear</param>
- </struct>
- <struct name="discreteVoronoi">
- <param name="Type">CellularAutomataVoronoi</param>
- <param name="resolution">10</param>
- <param name="diagonalNeighbours">true</param>
- </struct>
- <struct name="weights">
- <param name="Type">DiscreteVoronoiWeights</param>
- <param name="DiscreteVoronoi">discreteVoronoi</param>
- </struct>
- <struct name="localLayout">
- <param name="Type">MappedParticleLayout</param>
- </struct>
- <struct name="picIntegrationPoints">
- <param name="Type">IntegrationPointsSwarm</param>
- <param name="CellLayout">elementCellLayout</param>
- <param name="ParticleLayout">localLayout</param>
- <param name="FiniteElement_Mesh">mesh-linear</param>
- <param name="WeightsCalculator">weights</param>
- <param name="TimeIntegrator">timeIntegrator</param>
- <param name="IntegrationPointMapper">mapper</param>
- </struct>
- <struct name="mapper">
- <param name="Type">CoincidentMapper</param>
- <param name="IntegrationPointsSwarm">picIntegrationPoints</param>
- <param name="MaterialPointsSwarm">materialSwarm</param>
- </struct>
- <struct name="materialSwarmParticleLayout">
- <param name="Type">SpaceFillerParticleLayout</param>
- <param name="averageInitialParticlesPerCell">particlesPerCell</param>
- </struct>
- <struct name="materialSwarm">
- <param name="Type">MaterialPointsSwarm</param>
- <param name="CellLayout">elementCellLayout</param>
- <param name="ParticleLayout">materialSwarmParticleLayout</param>
- <param name="FiniteElement_Mesh">mesh-linear</param>
- <param name="SplittingRoutine">splittingRoutine</param>
- <param name="RemovalRoutine">removalRoutine</param>
- <param name="EscapedRoutine">escapedRoutine</param>
- </struct>
- <struct name="materialSwarmAdvector">
- <param name="Type">SwarmAdvector</param>
- <param name="Swarm">materialSwarm</param>
- <param name="TimeIntegrator">timeIntegrator</param>
- <param name="VelocityField">VelocityField</param>
- <param name="PeriodicBCsManager">periodicBCsManager</param>
- <param name="allowFallbackToFirstOrder">True</param>
- </struct>
- <struct name="removalRoutine">
- <param name="Type">DiscreteVoronoiRemove</param>
- <param name="idealParticleCount">particlesPerCell</param>
- <param name="DiscreteVoronoi">discreteVoronoi</param>
- </struct>
- <struct name="splittingRoutine">
- <param name="Type">ReseedSplitting</param>
- <param name="idealParticleCount">particlesPerCell</param>
- <param name="DiscreteVoronoi">discreteVoronoi</param>
- </struct>
- <struct name="solutionVelocity">
- <param name="Type">SolutionVector</param>
- <param name="FeVariable">VelocityField</param>
- </struct>
- <struct name="solutionPressure">
- <param name="Type">SolutionVector</param>
- <param name="FeVariable">PressureField</param>
- </struct>
- <struct name="mom_force">
- <param name="Type">ForceVector</param>
- <param name="FeVariable">VelocityField</param>
- <param name="ExtraInfo">context</param>
- </struct>
- <struct name="cont_force">
- <param name="Type">ForceVector</param>
- <param name="FeVariable">PressureField</param>
- <param name="ExtraInfo">context</param>
- </struct>
- <struct name="k_matrix">
- <param name="Type">StiffnessMatrix</param>
- <param name="RowVariable">VelocityField</param>
- <param name="ColumnVariable">VelocityField</param>
- <param name="RHS">mom_force</param>
- <param name="allowZeroElementContributions">False</param>
- </struct>
- <struct name="constitutiveMatrix">
- <param name="Type">ConstitutiveMatrixCartesian</param>
- <param name="Swarm">picIntegrationPoints</param>
- <param name="StiffnessMatrix">k_matrix</param>
- </struct>
- <struct name="g_matrix">
- <param name="Type">StiffnessMatrix</param>
- <param name="RowVariable">VelocityField</param>
- <param name="ColumnVariable">PressureField</param>
- <param name="RHS">cont_force</param>
- <param name="allowZeroElementContributions">False</param>
- </struct>
- <struct name="gradientStiffnessMatrixTerm">
- <param name="Type">GradientStiffnessMatrixTerm</param>
- <param name="Swarm">gaussSwarm</param>
- <param name="StiffnessMatrix">g_matrix</param>
- </struct>
- <struct name="preconditioner">
- <param name="Type">StiffnessMatrix</param>
- <param name="RowVariable">PressureField</param>
- <param name="ColumnVariable">PressureField</param>
- <param name="RHS">cont_force</param>
- <param name="allowZeroElementContributions">True</param>
- </struct>
- <struct name="preconditionerTerm">
- <param name="Type">UzawaPreconditionerTerm</param>
- <param name="Swarm">picIntegrationPoints</param>
- <param name="StiffnessMatrix">preconditioner</param>
- </struct>
- <struct name="uzawa">
- <param name="Type">Stokes_SLE_UzawaSolver</param>
- <param name="Preconditioner">preconditioner</param>
- <param name="tolerance">1.0e-5</param>
- <param name="maxIterations">5000</param>
- </struct>
- <struct name="stokesEqn">
- <param name="Type">Stokes_SLE</param>
- <param name="SLE_Solver">uzawa</param>
- <param name="Context">context</param>
- <param name="StressTensorMatrix">k_matrix</param>
- <param name="GradientMatrix">g_matrix</param>
- <param name="DivergenceMatrix"></param>
- <param name="CompressibilityMatrix">c_matrix</param>
- <param name="VelocityVector">solutionVelocity</param>
- <param name="PressureVector">solutionPressure</param>
- <param name="ForceVector">mom_force</param>
- <param name="ContinuityForceVector">cont_force</param>
- <param name="killNonConvergent">false</param>
- <param name="nonLinearMaxIterations">nonLinearMaxIterations</param>
- <param name="nonLinearTolerance">nonLinearTolerance</param>
- </struct>
- <struct name="backgroundShape">
- <param name="Type">Everywhere</param>
- </struct>
- <struct name="pdmsShape">
- <param name="Type">Box</param>
- <param name="startX">0.5</param>
- <param name="endX">1.5</param>
- <param name="startY">0.0</param>
- <param name="endY">0.05</param>
- <param name="startZ">minZ</param>
- <param name="endZ">maxZ</param>
- </struct>
- <struct name="stripShape">
- <param name="Type">Box</param>
- <param name="startX">minX</param>
- <param name="endX">maxX</param>
- <param name="startY">0.15</param>
- <param name="endY">0.25</param>
- <param name="startZ">minZ</param>
- <param name="endZ">maxZ</param>
- </struct>
- <struct name="crustShape">
- <param name="Type">Intersection</param>
- <list name="shapes">
- <param>backgroundShape</param>
- <param>!pdmsShape</param>
- <param>!stripShape</param>
- </list>
- </struct>
- <struct name="crustViscosity">
- <param name="Type">MaterialViscosity</param>
- <param name="eta0">10.0</param>
- </struct>
- <struct name="strainWeakening">
- <param name="Type">StrainWeakening</param>
- <param name="TimeIntegrator">timeIntegrator</param>
- <param name="MaterialPointsSwarm">materialSwarm</param>
- <param name="softeningStrain">0.1</param>
- <param name="initialDamageFraction">0.0</param>
- <param name="initialDamageWavenumber">0.5</param>
- <param name="initialDamageFactor">0.5</param>
- <param name="healingRate">0.0</param>
- </struct>
- <struct name="yielding">
- <param name="Type">MohrCoulomb</param>
- <param name="PressureField">PressureField</param>
- <param name="VelocityGradientsField">VelocityGradientsField</param>
- <param name="MaterialPointsSwarm">materialSwarm</param>
- <param name="Context">context</param>
- <param name="StrainWeakening">strainWeakening</param>
- <param name="cohesion">10.0</param>
- <param name="cohesionAfterSoftening">0.0001</param>
- <param name="frictionCoefficient">0.0</param>
- <param name="frictionCoefficientAfterSoftening">0.0</param>
- <param name="minimumYieldStress">0.00001</param>
- </struct>
- <struct name="pdmsViscosity">
- <param name="Type">MaterialViscosity</param>
- <param name="eta0">1.0</param>
- </struct>
- <struct name="storeViscosity">
- <param name="Type">StoreVisc</param>
- <param name="MaterialPointsSwarm">materialSwarm</param>
- </struct>
- <struct name="crust">
- <param name="Type">RheologyMaterial</param>
- <param name="Shape">crustShape</param>
- <list name="Rheology">
- <param>crustViscosity</param>
- <param>yielding</param>
- <param>storeViscosity</param>
- </list>
- </struct>
- <struct name="strip">
- <param name="Type">RheologyMaterial</param>
- <param name="Shape">stripShape</param>
- <list name="Rheology">
- <param>crustViscosity</param>
- <param>yielding</param>
- <param>storeViscosity</param>
- </list>
- </struct>
- <struct name="pdms">
- <param name="Type">RheologyMaterial</param>
- <param name="Shape">pdmsShape</param>
- <list name="Rheology">
- <param>pdmsViscosity</param>
- <param>storeViscosity</param>
- </list>
- </struct>
- <struct name="escapedRoutine">
- <param name="Type">EscapedRoutine</param>
- <param name="idealParticleCount">0</param>
- </struct>
- <struct name="velocityRemesher">
- <param name="Type">StripRemesher</param>
- <param name="mesh">mesh-linear</param>
- <param name="meshType">regular</param>
- <list name="dims">
- <param>true</param>
- <param>true</param>
- <param>true</param>
- </list>
- </struct>
- <struct name="pressureRemesher">
- <param name="Type">CellRemesher</param>
- <param name="mesh">mesh-constant</param>
- <param name="meshType">regular</param>
- <param name="dims">3</param>
- <param name="cellMesh">mesh-linear</param>
- </struct>
- </struct>
- <list name="plugins">
- <param>StG_FEM_StandardConditionFunctions</param>
- <param>Underworld_EulerDeform</param>
- <param>Underworld_DumpSwarm</param>
- </list>
- <param name="journal-level.info.Stg_ComponentFactory">1</param>
- <param name="journal.debug">True</param>
- <param name="journal-enable-branch.debug.StG_FEM">True</param>
- <param name="journal-level-branch.debug.StG_FEM">1</param>
- <param name="maxTimeSteps">500</param>
- <param name="outputEvery">1</param>
- <param name="dumpEvery">1</param>
- <param name="outputPath">./output.sandbox</param>
- <param name="dim">2</param>
- <param name="shadowDepth">1</param>
- <param name="minX">0.0f</param>
- <param name="minY">0.0f</param>
- <param name="minZ">0.0f</param>
- <param name="maxX">2.0f</param>
- <param name="maxY">0.35f</param>
- <param name="maxZ">1.0f</param>
- <param name="elementResI">32</param>
- <param name="elementResJ">16</param>
- <param name="elementResK">4</param>
- <param name="allowUnbalancing">True</param>
- <param name="buildNodeNeighbourTbl">True</param>
- <param name="buildElementNeighbourTbl">True</param>
- <param name="gaussParticlesX">2</param>
- <param name="gaussParticlesY">2</param>
- <param name="gaussParticlesZ">2</param>
- <param name="particlesPerCell">30</param>
- <param name="cellParticleCount">30</param>
- <param name="seed">13</param>
- <struct name="EulerDeform">
- <list name="systems">
- <struct>
- <param name="mesh">mesh-constant</param>
- <param name="remesher">pressureRemesher</param>
- <param name="velocityField">VelocityField</param>
- <list name="fields">
- <struct>
- <param name="field">PressureField</param>
- <param name="variable">pressure</param>
- </struct>
- </list>
- </struct>
- <struct>
- <param name="mesh">mesh-linear</param>
- <param name="remesher">velocityRemesher</param>
- <param name="velocityField">VelocityField</param>
- <param name="wrapTop">True</param>
- <list name="fields">
- <struct>
- <param name="field">VelocityField</param>
- <param name="variable">velocity</param>
- </struct>
- </list>
- </struct>
- </list>
- </struct>
- <struct name="velocityBCs">
- <param name="type">CompositeVC</param>
- <list name="vcList">
- <struct>
- <param name="type">WallVC</param>
- <param name="wall">front</param>
- <list name="variables">
- <struct>
- <param name="name">vz</param>
- <param name="type">double</param>
- <param name="value">0</param>
- </struct>
- </list>
- </struct>
- <struct>
- <param name="type">WallVC</param>
- <param name="wall">back</param>
- <list name="variables">
- <struct>
- <param name="name">vz</param>
- <param name="type">double</param>
- <param name="value">0</param>
- </struct>
- </list>
- </struct>
- <struct>
- <param name="type">WallVC</param>
- <param name="wall">left</param>
- <list name="variables">
- <struct>
- <param name="name">vx</param>
- <param name="type">double</param>
- <param name="value">0.0</param>
- </struct>
- </list>
- </struct>
- <struct>
- <param name="type">WallVC</param>
- <param name="wall">right</param>
- <list name="variables">
- <struct>
- <param name="name">vx</param>
- <param name="type">double</param>
- <param name="value">1.0</param>
- </struct>
- </list>
- </struct>
- <struct>
- <param name="type">WallVC</param>
- <param name="wall">bottom</param>
- <list name="variables">
- <struct>
- <param name="name">vy</param>
- <param name="type">double</param>
- <param name="value">0</param>
- </struct>
- <struct>
- <param name="name">vx</param>
- <param name="type">func</param>
- <param name="value">StepFunction</param>
- </struct>
- </list>
- </struct>
- </list>
- </struct>
- <param name="StepFunctionOffset">1.0</param>
- <param name="StepFunctionValue">1.0</param>
- <param name="StepFunctionDim">0</param>
- <param name="StepFunctionLessThan">False</param>
- <param name="interactive">t</param>
- <param name="checkpointEvery">1</param>
-</StGermainData>
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