[cig-commits] r4918 - in long/3D/Gale/trunk/src/Underworld: . InputFiles/tests

Wed Oct 11 13:53:04 PDT 2006

Author: walter
Date: 2006-10-11 13:53:02 -0700 (Wed, 11 Oct 2006)
New Revision: 4918

Modified:
   long/3D/Gale/trunk/src/Underworld/
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testAnisotropic-checkpoint.0of1.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testAnisotropic-checkpoint.0of2.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testAnisotropic-checkpoint.0of4.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testArrhenius-checkpoint.0of1.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testArrhenius-checkpoint.0of2.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testArrhenius-checkpoint.0of4.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtension-checkpoint.0of1.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtension-checkpoint.0of2.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtension-checkpoint.0of4.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionFMM-checkpoint.0of1.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionFMM-checkpoint.0of2.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionFMM-checkpoint.0of4.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionFMM3D-checkpoint.0of1.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testFrankKamenetskii-checkpoint.0of1.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testFrankKamenetskii-checkpoint.0of2.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testFrankKamenetskii-checkpoint.0of4.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testInternalHeating-checkpoint.0of1.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testInternalHeating-checkpoint.0of2.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testInternalHeating-checkpoint.0of4.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testMobileLid-checkpoint.0of1.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testMobileLid-checkpoint.0of2.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testMobileLid-checkpoint.0of4.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testMultiComponent-checkpoint.0of1.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testMultiComponent-checkpoint.0of2.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testMultiComponent-checkpoint.0of4.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testNonNewtonian-checkpoint.0of1.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testNonNewtonian-checkpoint.0of2.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testNonNewtonian-checkpoint.0of4.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testRayleighTaylor2D-checkpoint.0of1.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testRayleighTaylor2D-checkpoint.0of2.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testRayleighTaylor2D-checkpoint.0of4.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testSlabSubduction-checkpoint.0of1.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testSlabSubduction-checkpoint.0of2.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testSlabSubduction-checkpoint.0of4.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testThermoChemBenchmark-checkpoint.0of1.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testThermoChemBenchmark-checkpoint.0of2.sh
   long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testThermoChemBenchmark-checkpoint.0of4.sh
Log:
 r578 at earth:  boo | 2006-10-11 13:52:05 -0700
  r540 at earth (orig r317):  KathleenHumble | 2006-08-23 17:16:18 -0700
  adding in ./ in front of each test*.xml reference in the shell script
  This explicit stating of the obvious is needed for some of the more 
  pedantic cluster machines
  
 



Property changes on: long/3D/Gale/trunk/src/Underworld
___________________________________________________________________
Name: svk:merge
   - 9570c393-cf10-0410-b476-9a651db1e55a:/cig:577
c24a034b-ab11-0410-afe6-cfe714e2959e:/trunk:316
   + 9570c393-cf10-0410-b476-9a651db1e55a:/cig:578
c24a034b-ab11-0410-afe6-cfe714e2959e:/trunk:317

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testAnisotropic-checkpoint.0of1.sh
===================================================================

--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testAnisotropic-checkpoint.0of1.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testAnisotropic-checkpoint.0of1.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -22,15 +22,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testAnisotropic-checkpoint.0of2.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testAnisotropic-checkpoint.0of2.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testAnisotropic-checkpoint.0of2.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -22,15 +22,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --elementResI=8 --elementResJ=8 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --elementResI=8 --elementResJ=8 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few steps to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1 --elementResI=8 --elementResJ=8 > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1 --elementResI=8 --elementResJ=8 > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --elementResI=8 --elementResJ=8 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --elementResI=8 --elementResJ=8 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testAnisotropic-checkpoint.0of4.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testAnisotropic-checkpoint.0of4.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testAnisotropic-checkpoint.0of4.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -22,15 +22,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --elementResI=8 --elementResJ=8 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" -no_signal_handler > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --elementResI=8 --elementResJ=8 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" -no_signal_handler > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1 --elementResI=8 --elementResJ=8 -no_signal_handler > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1 --elementResI=8 --elementResJ=8 -no_signal_handler > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --elementResI=8 --elementResJ=8 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution -no_signal_handler --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --elementResI=8 --elementResJ=8 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution -no_signal_handler --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testArrhenius-checkpoint.0of1.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testArrhenius-checkpoint.0of1.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testArrhenius-checkpoint.0of1.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -22,15 +22,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testArrhenius-checkpoint.0of2.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testArrhenius-checkpoint.0of2.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testArrhenius-checkpoint.0of2.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -22,15 +22,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 -no_signal_handler --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 -no_signal_handler --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1 -no_signal_handler > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1 -no_signal_handler > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution  -no_signal_handler --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution  -no_signal_handler --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testArrhenius-checkpoint.0of4.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testArrhenius-checkpoint.0of4.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testArrhenius-checkpoint.0of4.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -22,15 +22,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 -no_signal_handler --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 -no_signal_handler --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1 -no_signal_handler > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1 -no_signal_handler > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution  -no_signal_handler --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution  -no_signal_handler --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtension-checkpoint.0of1.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtension-checkpoint.0of1.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtension-checkpoint.0of1.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -22,15 +22,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --elementResI=15 --elementResJ=15 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --elementResI=15 --elementResJ=15 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1 --elementResI=15 --elementResJ=15  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1 --elementResI=15 --elementResJ=15  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --elementResI=15 --elementResJ=15 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --elementResI=15 --elementResJ=15 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtension-checkpoint.0of2.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtension-checkpoint.0of2.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtension-checkpoint.0of2.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -22,15 +22,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --elementResI=15 --elementResJ=15 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --elementResI=15 --elementResJ=15 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1 --elementResI=15 --elementResJ=15  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1 --elementResI=15 --elementResJ=15  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --elementResI=15 --elementResJ=15 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --elementResI=15 --elementResJ=15 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtension-checkpoint.0of4.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtension-checkpoint.0of4.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtension-checkpoint.0of4.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -22,15 +22,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --elementResI=15 --elementResJ=15 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --elementResI=15 --elementResJ=15 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1 --elementResI=15 --elementResJ=15  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1 --elementResI=15 --elementResJ=15  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --elementResI=15 --elementResJ=15 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --elementResI=15 --elementResJ=15 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionFMM-checkpoint.0of1.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionFMM-checkpoint.0of1.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionFMM-checkpoint.0of1.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -22,15 +22,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --elementResI=20 --elementResJ=10 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --elementResI=20 --elementResJ=10 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1 --elementResI=20 --elementResJ=10  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1 --elementResI=20 --elementResJ=10  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --elementResI=20 --elementResJ=10 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --elementResI=20 --elementResJ=10 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionFMM-checkpoint.0of2.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionFMM-checkpoint.0of2.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionFMM-checkpoint.0of2.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -22,15 +22,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --elementResI=20 --elementResJ=10 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --elementResI=20 --elementResJ=10 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1 --elementResI=20 --elementResJ=10  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1 --elementResI=20 --elementResJ=10  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --elementResI=20 --elementResJ=10 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --elementResI=20 --elementResJ=10 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionFMM-checkpoint.0of4.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionFMM-checkpoint.0of4.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionFMM-checkpoint.0of4.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -22,15 +22,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --elementResI=20 --elementResJ=10 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --elementResI=20 --elementResJ=10 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1 --elementResI=20 --elementResJ=10  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1 --elementResI=20 --elementResJ=10  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --elementResI=20 --elementResJ=10 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --elementResI=20 --elementResJ=10 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionFMM3D-checkpoint.0of1.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionFMM3D-checkpoint.0of1.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testExtensionFMM3D-checkpoint.0of1.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -23,15 +23,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --elementResI=8 --elementResJ=4 --elementResK=8 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --elementResI=8 --elementResJ=4 --elementResK=8 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1 --elementResI=8 --elementResJ=4 --elementResK=8  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1 --elementResI=8 --elementResJ=4 --elementResK=8  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --elementResI=8 --elementResJ=4 --elementResK=8 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --elementResI=8 --elementResJ=4 --elementResK=8 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testFrankKamenetskii-checkpoint.0of1.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testFrankKamenetskii-checkpoint.0of1.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testFrankKamenetskii-checkpoint.0of1.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -23,15 +23,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testFrankKamenetskii-checkpoint.0of2.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testFrankKamenetskii-checkpoint.0of2.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testFrankKamenetskii-checkpoint.0of2.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -23,15 +23,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testFrankKamenetskii-checkpoint.0of4.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testFrankKamenetskii-checkpoint.0of4.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testFrankKamenetskii-checkpoint.0of4.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -23,15 +23,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testInternalHeating-checkpoint.0of1.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testInternalHeating-checkpoint.0of1.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testInternalHeating-checkpoint.0of1.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -22,15 +22,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testInternalHeating-checkpoint.0of2.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testInternalHeating-checkpoint.0of2.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testInternalHeating-checkpoint.0of2.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -22,15 +22,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testInternalHeating-checkpoint.0of4.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testInternalHeating-checkpoint.0of4.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testInternalHeating-checkpoint.0of4.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -22,15 +22,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testMobileLid-checkpoint.0of1.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testMobileLid-checkpoint.0of1.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testMobileLid-checkpoint.0of1.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -22,15 +22,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testMobileLid-checkpoint.0of2.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testMobileLid-checkpoint.0of2.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testMobileLid-checkpoint.0of2.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -22,15 +22,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testMobileLid-checkpoint.0of4.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testMobileLid-checkpoint.0of4.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testMobileLid-checkpoint.0of4.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -22,15 +22,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testMultiComponent-checkpoint.0of1.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testMultiComponent-checkpoint.0of1.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testMultiComponent-checkpoint.0of1.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -22,15 +22,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testMultiComponent-checkpoint.0of2.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testMultiComponent-checkpoint.0of2.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testMultiComponent-checkpoint.0of2.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -22,15 +22,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testMultiComponent-checkpoint.0of4.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testMultiComponent-checkpoint.0of4.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testMultiComponent-checkpoint.0of4.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -22,15 +22,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testNonNewtonian-checkpoint.0of1.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testNonNewtonian-checkpoint.0of1.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testNonNewtonian-checkpoint.0of1.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -23,15 +23,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testNonNewtonian-checkpoint.0of2.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testNonNewtonian-checkpoint.0of2.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testNonNewtonian-checkpoint.0of2.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -23,15 +23,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testNonNewtonian-checkpoint.0of4.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testNonNewtonian-checkpoint.0of4.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testNonNewtonian-checkpoint.0of4.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -23,15 +23,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testRayleighTaylor2D-checkpoint.0of1.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testRayleighTaylor2D-checkpoint.0of1.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testRayleighTaylor2D-checkpoint.0of1.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -23,15 +23,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testRayleighTaylor2D-checkpoint.0of2.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testRayleighTaylor2D-checkpoint.0of2.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testRayleighTaylor2D-checkpoint.0of2.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -23,15 +23,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testRayleighTaylor2D-checkpoint.0of4.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testRayleighTaylor2D-checkpoint.0of4.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testRayleighTaylor2D-checkpoint.0of4.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -23,15 +23,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testSlabSubduction-checkpoint.0of1.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testSlabSubduction-checkpoint.0of1.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testSlabSubduction-checkpoint.0of1.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -22,15 +22,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --elementResI=8 --elementResJ=4 --elementResK=8 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --elementResI=8 --elementResJ=4 --elementResK=8 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1 --elementResI=8 --elementResJ=4 --elementResK=8 > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1 --elementResI=8 --elementResJ=4 --elementResK=8 > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --elementResI=8 --elementResJ=4 --elementResK=8 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --elementResI=8 --elementResJ=4 --elementResK=8 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testSlabSubduction-checkpoint.0of2.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testSlabSubduction-checkpoint.0of2.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testSlabSubduction-checkpoint.0of2.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -22,15 +22,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --elementResI=8 --elementResJ=4 --elementResK=8 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --elementResI=8 --elementResJ=4 --elementResK=8 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1 --elementResI=8 --elementResJ=4 --elementResK=8 > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1 --elementResI=8 --elementResJ=4 --elementResK=8 > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --elementResI=8 --elementResJ=4 --elementResK=8 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --elementResI=8 --elementResJ=4 --elementResK=8 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testSlabSubduction-checkpoint.0of4.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testSlabSubduction-checkpoint.0of4.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testSlabSubduction-checkpoint.0of4.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -22,15 +22,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --elementResI=8 --elementResJ=4 --elementResK=8 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --elementResI=8 --elementResJ=4 --elementResK=8 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1 --elementResI=8 --elementResJ=4 --elementResK=8 > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1 --elementResI=8 --elementResJ=4 --elementResK=8 > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --elementResI=8 --elementResJ=4 --elementResK=8 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --elementResI=8 --elementResJ=4 --elementResK=8 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testThermoChemBenchmark-checkpoint.0of1.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testThermoChemBenchmark-checkpoint.0of1.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testThermoChemBenchmark-checkpoint.0of1.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -22,15 +22,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testThermoChemBenchmark-checkpoint.0of2.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testThermoChemBenchmark-checkpoint.0of2.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testThermoChemBenchmark-checkpoint.0of2.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -22,15 +22,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

Modified: long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testThermoChemBenchmark-checkpoint.0of4.sh
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testThermoChemBenchmark-checkpoint.0of4.sh	2006-10-11 20:53:00 UTC (rev 4917)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/tests/testThermoChemBenchmark-checkpoint.0of4.sh	2006-10-11 20:53:02 UTC (rev 4918)
@@ -22,15 +22,15 @@
 	
 	printf "\tRunning for 4 timesteps to generate expected result\n"
 	rm -rf ./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=4 --checkpointEvery=1 --outputPath=./output/"${partTestname}${procToWatch}of${nproc}GeneratedTestResult" > ./log/"${testname}.generateExpectedResult.out" 2> ./log/"${testname}.generateExpectedResult.error"
 	
 	# Run MPI's to generate first few stepa to checkpoint.
 	printf "\tRunning for 2 timesteps to generate checkpoints to reload from\n"
-	RunMPICommand ${testname} Underworld "${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
+	RunMPICommand ${testname} Underworld "./${partTestname}.xml" --interactive=False --maxTimeSteps=2 --checkpointEvery=1  > ./log/"${testname}.generateCheckpoint.out" --outputPath=./output/ 2> ./log/"${testname}.generateCheckpoint.error"
 	
 	# Do checkpointing test
 	printf "Doing actual test: restarting from timestep 2, checking if result by timestep 4 == previously generated one\n"
-	runAndHandleSystemTestStdLocations "Underworld ${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
+	runAndHandleSystemTestStdLocations "Underworld ./${partTestname}.xml --interactive=False --dumpEvery=1 --maxTimeSteps=2 --restartTimestep=2 --checkpointEvery=1 --plugins[]=StG_FEM_CompareFeVariableAgainstReferenceSolution --StG_FEM_CompareFeVariableAgainstReferenceSolution.referencePath=./output/${partTestname}${procToWatch}of${nproc}GeneratedTestResult --StG_FEM_CompareFeVariableAgainstReferenceSolution.timeStepToCompare=4 --StG_FEM_CompareFeVariableAgainstReferenceSolution.referenceFeVariabeSuffix=" "$0" "$@"
 
 else echo "${partTestname}.xml doesn't exist, so can't test it"
 fi

