[cig-commits] r4995 - mc/3D/CitcomS/trunk/doc/manual
sue at geodynamics.org
sue at geodynamics.org
Fri Oct 13 16:46:36 PDT 2006
Author: sue
Date: 2006-10-13 16:46:36 -0700 (Fri, 13 Oct 2006)
New Revision: 4995
Modified:
mc/3D/CitcomS/trunk/doc/manual/citcoms.lyx
Log:
updated url handling
Modified: mc/3D/CitcomS/trunk/doc/manual/citcoms.lyx
===================================================================
--- mc/3D/CitcomS/trunk/doc/manual/citcoms.lyx 2006-10-13 23:18:11 UTC (rev 4994)
+++ mc/3D/CitcomS/trunk/doc/manual/citcoms.lyx 2006-10-13 23:46:36 UTC (rev 4995)
@@ -5,6 +5,9 @@
\textclass book
\begin_preamble
\usepackage{hyperref}
+
+\let\myUrl\url
+\renewcommand{\url}[1]{(\myUrl{#1})}
\end_preamble
\language english
\inputencoding auto
@@ -144,18 +147,18 @@
\begin_layout Standard
The style of this publication is based on the
-\begin_inset LatexCommand \htmlurl[Apple Publications Style Guide]{http://developer.apple.com/documentation/UserExperience/Conceptual/APStyleGuide/AppleStyleGuide2003.pdf}
+\begin_inset LatexCommand \htmlurl[Apple Publications Style Guide]{developer.apple.com/documentation/UserExperience/Conceptual/APStyleGuide/AppleStyleGuide2003.pdf}
\end_inset
, as recommended by
-\begin_inset LatexCommand \htmlurl[Python.org]{http://www.python.org/}
+\begin_inset LatexCommand \htmlurl[Python.org]{www.python.org}
\end_inset
.
The documentation was produced using
-\begin_inset LatexCommand \htmlurl[LyX]{http://www.lyx.org/}
+\begin_inset LatexCommand \htmlurl[LyX]{www.lyx.org}
\end_inset
@@ -167,7 +170,7 @@
\begin_layout Standard
Errors and bug fixes in this manual should be directed to
-\begin_inset LatexCommand \url[CIG Mantle Convection Mailing List]{<cig-mc at geodynamics.org>}
+\begin_inset LatexCommand \htmlurl[CIG Mantle Convection Mailing List]{cig-mc at geodynamics.org}
\end_inset
@@ -179,14 +182,14 @@
\end_layout
\begin_layout Standard
-This documentation is aimed at scientists who prefer to use prepackaged
- and specialized analysis tools.
- Users are likely to be experienced computational Earth scientists and have
- familiarity with basic scripting, software installation, and programming;
- but are not likely to be professional programmers.
- Of those, there are likely to be two classes of users: those who just run
- models and those who modify the source code.
-
+This documentation is aimed at two categories of users: scientists who prefer
+ to use prepackaged and specialized analysis tools, and experienced computationa
+l Earth scientists.
+ Of the latter, there are likely to be two classes of users: those who just
+ run models, and those who modify the source code.
+ Users who modify the source are likely to have familiarity with scripting,
+ software installation, and programming, but are not necessarily professional
+ programmers.
\end_layout
\begin_layout Standard
@@ -269,7 +272,7 @@
The developers also request that in your oral presentations and in your
paper acknowledgements that you indicate your use of this code, the authors
of the code, and
-\begin_inset LatexCommand \htmlurl[CIG]{http://www.geodynamics.org/}
+\begin_inset LatexCommand \htmlurl[CIG]{www.geodynamics.org}
\end_inset
@@ -282,12 +285,12 @@
\begin_layout Standard
Pyre development is funded by the
-\begin_inset LatexCommand \htmlurl[U.S. Dept. of Energy's Advanced Simulation and Computing program]{http://www.sandia.gov/NNSA/ASC/}
+\begin_inset LatexCommand \htmlurl[U.S. Dept. of Energy's Advanced Simulation and Computing program]{www.sandia.gov/NNSA/ASC}
\end_inset
and the
-\begin_inset LatexCommand \htmlurl[National Science Foundation's]{http://www.nsf.gov/}
+\begin_inset LatexCommand \htmlurl[National Science Foundation's]{www.nsf.gov}
\end_inset
@@ -461,7 +464,7 @@
respectively.
CitComS was released to the community through the GeoFramework website
as version 1.0 and 1.1, and is currently available from
-\begin_inset LatexCommand \htmlurl[CIG]{http://www.geodynamics.org/}
+\begin_inset LatexCommand \htmlurl[CIG]{www.geodynamics.org}
\end_inset
@@ -481,17 +484,17 @@
\begin_layout Standard
CitComS is one component of a larger collection of software encompassed
by the GeoFramework, a collaborative project between the
-\begin_inset LatexCommand \htmlurl[Center for Advanced Computing Research (CACR)]{http://www.cacr.caltech.edu/}
+\begin_inset LatexCommand \htmlurl[Center for Advanced Computing Research (CACR)]{www.cacr.caltech.edu}
\end_inset
and the
-\begin_inset LatexCommand \htmlurl[Seismological Laboratory]{http://www.gps.caltech.edu/seismo/}
+\begin_inset LatexCommand \htmlurl[Seismological Laboratory]{www.gps.caltech.edu/seismo}
\end_inset
, both at Caltech, and the
-\begin_inset LatexCommand \htmlurl[Victorian Partnership for Advanced Computing]{http://www.vpac.org/}
+\begin_inset LatexCommand \htmlurl[Victorian Partnership for Advanced Computing]{www.vpac.org}
\end_inset
@@ -1153,7 +1156,7 @@
tar
\family default
file) from the
-\begin_inset LatexCommand \htmlurl[Geodynamics Software Packages web page]{http://www.geodynamics.org/cig/software/packages/}
+\begin_inset LatexCommand \htmlurl[Geodynamics Software Packages web page]{www.geodynamics.org/cig/software/packages}
\end_inset
@@ -1191,13 +1194,13 @@
\begin_layout Standard
For help, send e-mail to the
-\begin_inset LatexCommand \url[CIG Mantle Convection Mailing List]{<cig-mc at geodynamics.org>}
+\begin_inset LatexCommand \htmlurl[CIG Mantle Convection Mailing List]{cig-mc at geodynamics.org}
\end_inset
.
You can subscribe to the Mailing List and view archived discussion at
-\begin_inset LatexCommand \htmlurl[Geodynamics Mail Lists]{http://www.geodynamics.org/cig/lists/}
+\begin_inset LatexCommand \htmlurl[Geodynamics Mail Lists]{www.geodynamics.org/cig/lists}
\end_inset
@@ -1281,7 +1284,7 @@
\begin_layout Standard
MPICH is a freely available, portable implementation of MPI.
For more information, visit the
-\begin_inset LatexCommand \htmlurl[MPICH home page]{http://www-unix.mcs.anl.gov/mpi/mpich/}
+\begin_inset LatexCommand \htmlurl[MPICH home page]{www-unix.mcs.anl.gov/mpi/mpich}
\end_inset
@@ -1294,7 +1297,7 @@
\begin_layout Standard
You can download Python from the
-\begin_inset LatexCommand \htmlurl[Python website]{http://www.python.org/}
+\begin_inset LatexCommand \htmlurl[Python website]{www.python.org}
\end_inset
@@ -1318,19 +1321,19 @@
Note for Mac OS X Users
\series default
: You will need Xcode, which is freely available from
-\begin_inset LatexCommand \htmlurl[Apple]{http://developer.apple.com/}
+\begin_inset LatexCommand \htmlurl[Apple]{developer.apple.com}
\end_inset
.
Instead of using MPICH, you will probably want to use
-\begin_inset LatexCommand \htmlurl[LAM/MPI]{http://www.lam-mpi.org/}
+\begin_inset LatexCommand \htmlurl[LAM/MPI]{www.lam-mpi.org}
\end_inset
.
LAM/MPI is available as a Fink package; if you have
-\begin_inset LatexCommand \htmlurl[Fink]{http://fink.sourceforge.net/}
+\begin_inset LatexCommand \htmlurl[Fink]{fink.sourceforge.net}
\end_inset
@@ -1348,7 +1351,7 @@
\begin_layout Standard
Download CitComS.py from the
-\begin_inset LatexCommand \htmlurl[Geodynamics website]{http://www.geodynamics.org/}
+\begin_inset LatexCommand \htmlurl[Geodynamics website]{www.geodynamics.org}
\end_inset
@@ -2040,7 +2043,7 @@
NumPy is an extension to Python which adds support for multi-dimensional
arrays for use in scientific computing.
You may download NumPy at the
-\begin_inset LatexCommand \htmlurl[NumPy home page]{http://numpy.scipy.org/}
+\begin_inset LatexCommand \htmlurl[NumPy home page]{numpy.scipy.org}
\end_inset
@@ -2070,7 +2073,7 @@
PyTables is an extension to Python which is able to expose HDF5 array datasets
as Python NumPy arrays.
It is available at
-\begin_inset LatexCommand \htmlurl[PyTables]{http://www.pytables.org}
+\begin_inset LatexCommand \htmlurl[PyTables]{www.pytables.org}
\end_inset
@@ -2102,7 +2105,7 @@
\begin_layout Standard
HDFView is a visual tool for browsing and editing HDF5 files.
You may download it from
-\begin_inset LatexCommand \htmlurl[HDF Java Products]{http://hdf.ncsa.uiuc.edu/hdf-java-html/hdfview/}
+\begin_inset LatexCommand \htmlurl[HDF Java Products]{hdf.ncsa.uiuc.edu/hdf-java-html/hdfview}
\end_inset
@@ -2121,7 +2124,7 @@
In order to import HDF5 file into OpenDX, you will need the OpenDXutils
package from the Cactus project.
Go to the
-\begin_inset LatexCommand \url[OpenDXutils package website]{http://www.cactuscode.org/Visualization/openDX}
+\begin_inset LatexCommand \url[OpenDXutils package website]{www.cactuscode.org/Visualization/openDX}
\end_inset
@@ -2330,7 +2333,7 @@
\begin_layout Standard
The CitcomS source code is available via a Subversion server at the
-\begin_inset LatexCommand \htmlurl[Geodynamics website]{http://www.geodynamics.org/}
+\begin_inset LatexCommand \htmlurl[Geodynamics website]{www.geodynamics.org}
\end_inset
@@ -2366,7 +2369,7 @@
\family default
; it should return a usage message.
For more information on Subversion, visit the
-\begin_inset LatexCommand \htmlurl[Subversion website]{http://subversion.tigris.org/}
+\begin_inset LatexCommand \htmlurl[Subversion website]{subversion.tigris.org}
\end_inset
@@ -2400,7 +2403,7 @@
\begin_layout Standard
For more information about these GNU tools, see the
-\begin_inset LatexCommand \htmlurl[GNU website]{http://www.gnu.org/software/}
+\begin_inset LatexCommand \htmlurl[GNU website]{www.gnu.org/software}
\end_inset
@@ -3559,7 +3562,7 @@
To visualize your results, it is recommended that you use the open source
Open Visualization Data Explorer, better known as OpenDX.
The software is available from the
-\begin_inset LatexCommand \htmlurl[OpenDX website]{http://www.opendx.org/}
+\begin_inset LatexCommand \htmlurl[OpenDX website]{www.opendx.org}
\end_inset
@@ -3574,7 +3577,7 @@
\family default
in your distribution.
If you are using Mac OS X, OpenDX is available via
-\begin_inset LatexCommand \htmlurl[Fink]{http://fink.sourceforge.net/}
+\begin_inset LatexCommand \htmlurl[Fink]{fink.sourceforge.net}
\end_inset
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