[cig-commits] r4622 - in mc/3D/CitcomS/trunk: . bin module module/Exchanger

leif at geodynamics.org leif at geodynamics.org
Mon Sep 25 18:09:16 PDT 2006


Author: leif
Date: 2006-09-25 18:09:16 -0700 (Mon, 25 Sep 2006)
New Revision: 4622

Added:
   mc/3D/CitcomS/trunk/ez_setup.py
   mc/3D/CitcomS/trunk/setup.py
Modified:
   mc/3D/CitcomS/trunk/bin/Makefile.am
   mc/3D/CitcomS/trunk/bin/pycitcoms.cc
   mc/3D/CitcomS/trunk/configure.ac
   mc/3D/CitcomS/trunk/module/Exchanger/Makefile.am
   mc/3D/CitcomS/trunk/module/Makefile.am
Log:
Made 'Exchanger' optional.  Give "--with-exchanger=[yes|no]" as an argument
to 'configure' to manually specify whether you want Exchanger; the default
is "auto", which means to use Exchanger if it's installed (and on your
PYTHONPATH).

Egg-ified 'configure' checks for Python packages.  This means that CitcomS now
requires the egg-ified CIG version of Pythia -- and (optionally) the egg-ified
Exchanger.  Old Pythia/Exchanger installations will not work, as they lack the
egg-metadata ('configure' will act as if they are not installed).

Added 'setup.py', which will automatically download and install the egg
version of Pythia -- as well as the egg system itself ('setuptools').  If
you want Exchanger, you still must install it manually (the way C++ is used
prevents complete egg-ification of Exchanger).  Note that 'setup.py' actually
checks-out the latest Pythia from the SVN repository.  The release version of
CitcomS will download a packaged Pythia from the website instead.


Modified: mc/3D/CitcomS/trunk/bin/Makefile.am
===================================================================
--- mc/3D/CitcomS/trunk/bin/Makefile.am	2006-09-26 00:39:50 UTC (rev 4621)
+++ mc/3D/CitcomS/trunk/bin/Makefile.am	2006-09-26 01:09:16 UTC (rev 4622)
@@ -28,6 +28,7 @@
 bin_SCRIPTS =
 
 abs_top_srcdir = @abs_top_srcdir@
+abs_top_builddir = @abs_top_builddir@
 abs_builddir = @abs_builddir@
 
 if COND_PYRE
@@ -43,12 +44,22 @@
 else
     INTERPRETER = $(PYTHON)
     noinstINTERPRETER = $(PYTHON)
-    noinstPYTHONPATH = $(abs_top_srcdir):$(abs_top_srcdir)/module/.libs:$(abs_top_srcdir)/module/Exchanger/.libs
+    noinstPYTHONPATH = $(abs_top_srcdir):$(abs_top_builddir)/module/.libs:$(abs_top_builddir)/module/Exchanger/.libs
     libCitcomS = $(top_builddir)/lib/libCitcomS.la
 endif
 
+if COND_EXCHANGER
+    MAYBE_EXCHANGER_CPPFLAGS = -DWITH_EXCHANGER
+    MAYBE_EXCHANGER_INCLUDES = -I$(top_srcdir)/module/Exchanger
+    MAYBE_EXCHANGER_LDADD = $(top_builddir)/module/Exchanger/libExchangerLibmodule.a
+else
+    MAYBE_EXCHANGER_CPPFLAGS =
+    MAYBE_EXCHANGER_INCLUDES =
+    MAYBE_EXCHANGER_LDADD =
 endif
 
+endif
+
 CC = $(MPICC)
 CXX = $(MPICXX)
 INCLUDES = \
@@ -58,7 +69,8 @@
 if COND_PYRE
 INCLUDES += \
 	-I$(top_srcdir)/module \
-	-I$(top_srcdir)/module/Exchanger \
+	$(MAYBE_EXCHANGER_INCLUDES) \
+	$(PYTHON_EGG_CPPFLAGS) \
 	-I$(PYTHON_INCDIR)
 endif
 
@@ -101,10 +113,11 @@
 
 # pycitcoms (libCitcomS + CitcomSLibmodule + libExchanger +
 # ExchangerLibmodule + embedded Python interpreter)
+pycitcoms_CPPFLAGS = $(MAYBE_EXCHANGER_CPPFLAGS)
 pycitcoms_SOURCES = pycitcoms.cc
 pycitcoms_LDADD = \
 	$(top_builddir)/module/libPyxMPImodule.a \
-	$(top_builddir)/module/Exchanger/libExchangerLibmodule.a \
+	$(MAYBE_EXCHANGER_LDADD) \
 	$(top_builddir)/module/libCitcomSLibmodule.a \
 	$(libCitcomS) \
 	$(LIBHDF5) \
@@ -113,7 +126,7 @@
 	@rm -f pycitcoms$(EXEEXT)
 	$(CXXLINK) $(PYTHON_LDFLAGS) $(PYTHON_LINKFORSHARED) \
 		$(pycitcoms_LDFLAGS) $(pycitcoms_OBJECTS) $(pycitcoms_LDADD) \
-		-lExchanger -l_mpimodule -ljournal \
+		$(PYTHON_EGG_LDFLAGS) \
 		$(PYTHON_BLDLIBRARY) \
 		$(MPILIBS) \
 		$(FCLIBS) \

Modified: mc/3D/CitcomS/trunk/bin/pycitcoms.cc
===================================================================
--- mc/3D/CitcomS/trunk/bin/pycitcoms.cc	2006-09-26 00:39:50 UTC (rev 4621)
+++ mc/3D/CitcomS/trunk/bin/pycitcoms.cc	2006-09-26 01:09:16 UTC (rev 4622)
@@ -30,13 +30,17 @@
 #include <stdio.h>
 #include <mpi.h>
 #include "CitcomSmodule.h"
+#ifdef WITH_EXCHANGER
 #include "Exchangermodule.h"
+#endif
 
 PyMODINIT_FUNC initPyxMPI(void);
 
 struct _inittab inittab[] = {
     { "PyxMPI", initPyxMPI },
+#ifdef WITH_EXCHANGER
     { "ExchangerLib", initExchangerLib },
+#endif
     { "CitcomSLib", initCitcomSLib },
     { 0, 0 }
 };

Modified: mc/3D/CitcomS/trunk/configure.ac
===================================================================
--- mc/3D/CitcomS/trunk/configure.ac	2006-09-26 00:39:50 UTC (rev 4621)
+++ mc/3D/CitcomS/trunk/configure.ac	2006-09-26 01:09:16 UTC (rev 4622)
@@ -35,11 +35,6 @@
 # 'configure' options
 AC_ARG_VAR(PYTHON, [Python interpreter])
 AC_ARG_VAR(PYTHONPATH, [Python module search path])
-AC_ARG_VAR(MPIRUN, [command to run MPI programs])
-AC_ARG_VAR(BSUB, [command to submit LSF batch jobs])
-AC_ARG_VAR(QSUB, [command to submit PBS batch jobs])
-AC_ARG_VAR(GLOBUSRUN, [command to submit Globus batch jobs])
-AC_ARG_VAR(BATCHTYPE, [default batch system (lsf, pbs, or globus)])
 AC_ARG_VAR(PHDF5_HOME, [home path to parallel HDF5 library])
 AC_ARG_WITH([pyre],
     [AC_HELP_STRING([--with-pyre],
@@ -47,6 +42,11 @@
     [want_pyre="$withval"],
     [want_pyre=yes])
 AM_CONDITIONAL([COND_PYRE], [test "$want_pyre" = yes])
+AC_ARG_WITH([exchanger],
+    [AC_HELP_STRING([--with-exchanger],
+        [use Exchanger @<:@default=auto@:>@])],
+    [want_exchanger="$withval"],
+    [want_exchanger=auto])
 AC_ARG_WITH([hdf5],
     [AC_HELP_STRING([--with-hdf5],
         [enable HDF5 output @<:@default=auto@:>@])],
@@ -59,48 +59,35 @@
     [want_embedding=yes])
 AM_CONDITIONAL([COND_EMBEDDING], [test "$want_embedding" = yes])
 
-# Checks for programs.
 if test "$want_pyre" = yes; then
+    # Check for Python.
     AM_PATH_PYTHON([2.3])
     CIT_PYTHON_SYSCONFIG
-    AC_PATH_PROG([MPIRUN], [mpirun])
-    if test -z "$MPIRUN"; then
-        AC_PATH_PROG([MPIRUN], [mpiexec])
-        if test -z "$MPIRUN"; then
-            AC_MSG_ERROR([program 'mpirun' not found])
-        fi
+
+    # Checks for Python modules and packages.
+    CIT_CHECK_PYTHON_EGG([pythia >= 0.8-1.0dev-r4617, < 0.8-2.0a, == dev])
+    if test "$want_exchanger" != no; then
+        CIT_CHECK_PYTHON_EGG([Exchanger >= 1.0, < 2.0a],
+                             [ # found
+                                 if test "$want_exchanger" = auto; then
+                                     want_exchanger=yes
+                                 fi
+                             ], [ # not found
+                                 if test "$want_exchanger" = auto; then
+                                     want_exchanger=no
+                                     AC_MSG_WARN(['Exchanger' package not found; disabling Exchanger support])
+                                 else
+                                     AC_MSG_ERROR(['Exchanger' package not found])
+                                 fi
+			     ])
     fi
-    AC_PATH_PROG([BSUB], [bsub])
-    AC_PATH_PROG([QSUB], [qsub])
-    AC_PATH_PROG([GLOBUSRUN], [globusrun])
-    if test -z "$BATCHTYPE"; then
-        if test -n "$BSUB"; then
-            LAUNCHER="lsf"
-        elif test -n "$QSUB"; then
-            LAUNCHER="pbs"
-        elif test -n "$GLOBUSRUN"; then
-            LAUNCHER="globus"
-        else
-            if $MPIRUN --help 2>&1 | grep machinefile >/dev/null; then
-                LAUNCHER="mpich"
-            elif $MPIRUN --invalid 2>&1 | grep softness >/dev/null; then
-                # MPICH2
-                LAUNCHER="mpich"
-            else
-                LAUNCHER="lam-mpi"
-            fi
-        fi
-        test -z "$BSUB" && BSUB="bsub"
-        test -z "$QSUB" && QSUB="qsub"
-        test -z "$GLOBUSRUN" && GLOBUSRUN="globusrun"
-    else
-        case "$BATCHTYPE" in
-            lsf | pbs | globus) LAUNCHER=$BATCHTYPE ;;
-            *) AC_MSG_ERROR([BATCHTYPE=$BATCHTYPE is invalid]) ;;
-        esac
-    fi
-    AC_SUBST([LAUNCHER])
+    CIT_PYTHON_EGG_FLAGS
+else
+    want_exchanger=no
 fi
+AM_CONDITIONAL([COND_EXCHANGER], [test "$want_exchanger" = yes])
+
+# Checks for programs.
 CIT_PROG_MPICC
 CIT_PROG_MPICXX
 CC=$MPICC
@@ -111,14 +98,6 @@
 fi
 AC_PROG_LIBTOOL
 
-# Checks for Python modules and packages.
-if test "$want_pyre" = yes; then
-    PYTHONPATH="${pythondir}:${pyexecdir}${PYTHONPATH:+:${PYTHONPATH}}"; export PYTHONPATH
-    CIT_PATH_PYTHIA([0.8], [mpi])
-    CIT_PATH_EXCHANGER([1.0])
-    AC_SUBST([PYTHONPATH])
-fi
-
 # Checks for libraries.
 if test "$want_pyre" = yes; then
     AC_LANG_PUSH(C++)
@@ -136,7 +115,7 @@
 else
     CIT_HEADER_MPI
 fi
-if test "$want_hdf5" = yes -o "$want_hdf5" = auto; then
+if test "$want_hdf5" != no; then
     if test "$PHDF5_HOME"; then
         CPPFLAGS="-I$PHDF5_HOME/include $CPPFLAGS"
     fi
@@ -144,7 +123,7 @@
     if test "$HDF5NOTFOUND"; then
         if test "$want_hdf5" = auto; then
             want_hdf5=no
-            echo Cannot find hdf5.h, disable HDF5 support
+            AC_MSG_WARN([Cannot find hdf5.h, disabling HDF5 support])
         else
             AC_MSG_ERROR([HDF5 header file "hdf5.h" not found!])
         fi
@@ -167,7 +146,7 @@
 fi
 AC_SUBST(LIBM)
 
-if test "$want_hdf5" = yes -o "$want_hdf5" = auto; then
+if test "$want_hdf5" != no; then
     if test "$PHDF5_HOME"; then
         LDFLAGS="-L$PHDF5_HOME/lib $LDFLAGS"
     fi
@@ -178,19 +157,19 @@
     if test "$HDF5NOTFOUND"; then
         if test "$want_hdf5" = auto; then
             want_hdf5=no
-            echo Cannot find find HDF5 library, disable HDF5 support
+            AC_MSG_WARN([Cannot find HDF5 library, disabling HDF5 support])
         else
             AC_MSG_ERROR([HDF5 library not found; try setting PHDF5_HOME])
         fi
     fi
 fi
-if test "$want_hdf5" = yes -o "$want_hdf5" = auto; then
+if test "$want_hdf5" != no; then
     # Checks for HDF5 parallel-IO function
     AC_CHECK_LIB(hdf5, H5Pset_dxpl_mpio, [have_phdf5="yes"], [HDF5NOTFOUND=1])
     if test "$HDF5NOTFOUND"; then
         if test "$want_hdf5" = auto; then
             want_hdf5=no
-            echo Cannot find find parallel HDF5 library, disable HDF5 support
+            AC_MSG_WARN([Cannot find parallel HDF5 library, disabling HDF5 support])
         else
             AC_MSG_ERROR([Need Parallel HDF5; try compiling HDF5 with --enable-parallel])
         fi
@@ -214,10 +193,6 @@
                  visual/Makefile
                  visual/OpenDXMacro/Makefile])
 
-if test "$want_pyre" = yes; then
-    AC_CONFIG_SUBDIRS([pythia-0.8 Exchanger])
-fi
-
 AC_OUTPUT
 
 # report configuration summary
@@ -234,6 +209,7 @@
 echo -e "\t LDFLAGS: " $LDFLAGS
 echo -e "\t CXXFLAGS: " $CXXFLAGS
 echo -e "\t with-pyre: " $want_pyre
+echo -e "\t with-exchanger: " $want_exchanger
 echo -e "\t with-hdf5: " $want_hdf5
 echo
 

Added: mc/3D/CitcomS/trunk/ez_setup.py
===================================================================
--- mc/3D/CitcomS/trunk/ez_setup.py	2006-09-26 00:39:50 UTC (rev 4621)
+++ mc/3D/CitcomS/trunk/ez_setup.py	2006-09-26 01:09:16 UTC (rev 4622)
@@ -0,0 +1,222 @@
+#!python
+"""Bootstrap setuptools installation
+
+If you want to use setuptools in your package's setup.py, just include this
+file in the same directory with it, and add this to the top of your setup.py::
+
+    from ez_setup import use_setuptools
+    use_setuptools()
+
+If you want to require a specific version of setuptools, set a download
+mirror, or use an alternate download directory, you can do so by supplying
+the appropriate options to ``use_setuptools()``.
+
+This file can also be run as a script to install or upgrade setuptools.
+"""
+import sys
+DEFAULT_VERSION = "0.6c3"
+DEFAULT_URL     = "http://cheeseshop.python.org/packages/%s/s/setuptools/" % sys.version[:3]
+
+md5_data = {
+    'setuptools-0.6b1-py2.3.egg': '8822caf901250d848b996b7f25c6e6ca',
+    'setuptools-0.6b1-py2.4.egg': 'b79a8a403e4502fbb85ee3f1941735cb',
+    'setuptools-0.6b2-py2.3.egg': '5657759d8a6d8fc44070a9d07272d99b',
+    'setuptools-0.6b2-py2.4.egg': '4996a8d169d2be661fa32a6e52e4f82a',
+    'setuptools-0.6b3-py2.3.egg': 'bb31c0fc7399a63579975cad9f5a0618',
+    'setuptools-0.6b3-py2.4.egg': '38a8c6b3d6ecd22247f179f7da669fac',
+    'setuptools-0.6b4-py2.3.egg': '62045a24ed4e1ebc77fe039aa4e6f7e5',
+    'setuptools-0.6b4-py2.4.egg': '4cb2a185d228dacffb2d17f103b3b1c4',
+    'setuptools-0.6c1-py2.3.egg': 'b3f2b5539d65cb7f74ad79127f1a908c',
+    'setuptools-0.6c1-py2.4.egg': 'b45adeda0667d2d2ffe14009364f2a4b',
+    'setuptools-0.6c2-py2.3.egg': 'f0064bf6aa2b7d0f3ba0b43f20817c27',
+    'setuptools-0.6c2-py2.4.egg': '616192eec35f47e8ea16cd6a122b7277',
+    'setuptools-0.6c3-py2.3.egg': 'f181fa125dfe85a259c9cd6f1d7b78fa',
+    'setuptools-0.6c3-py2.4.egg': 'e0ed74682c998bfb73bf803a50e7b71e',
+    'setuptools-0.6c3-py2.5.egg': 'abef16fdd61955514841c7c6bd98965e',
+}
+
+import sys, os
+
+def _validate_md5(egg_name, data):
+    if egg_name in md5_data:
+        from md5 import md5
+        digest = md5(data).hexdigest()
+        if digest != md5_data[egg_name]:
+            print >>sys.stderr, (
+                "md5 validation of %s failed!  (Possible download problem?)"
+                % egg_name
+            )
+            sys.exit(2)
+    return data
+
+
+def use_setuptools(
+    version=DEFAULT_VERSION, download_base=DEFAULT_URL, to_dir=os.curdir,
+    download_delay=15
+):
+    """Automatically find/download setuptools and make it available on sys.path
+
+    `version` should be a valid setuptools version number that is available
+    as an egg for download under the `download_base` URL (which should end with
+    a '/').  `to_dir` is the directory where setuptools will be downloaded, if
+    it is not already available.  If `download_delay` is specified, it should
+    be the number of seconds that will be paused before initiating a download,
+    should one be required.  If an older version of setuptools is installed,
+    this routine will print a message to ``sys.stderr`` and raise SystemExit in
+    an attempt to abort the calling script.
+    """
+    try:
+        import setuptools
+        if setuptools.__version__ == '0.0.1':
+            print >>sys.stderr, (
+            "You have an obsolete version of setuptools installed.  Please\n"
+            "remove it from your system entirely before rerunning this script."
+            )
+            sys.exit(2)
+    except ImportError:
+        egg = download_setuptools(version, download_base, to_dir, download_delay)
+        sys.path.insert(0, egg)
+        import setuptools; setuptools.bootstrap_install_from = egg
+
+    import pkg_resources
+    try:
+        pkg_resources.require("setuptools>="+version)
+
+    except pkg_resources.VersionConflict, e:
+        # XXX could we install in a subprocess here?
+        print >>sys.stderr, (
+            "The required version of setuptools (>=%s) is not available, and\n"
+            "can't be installed while this script is running. Please install\n"
+            " a more recent version first.\n\n(Currently using %r)"
+        ) % (version, e.args[0])
+        sys.exit(2)
+
+def download_setuptools(
+    version=DEFAULT_VERSION, download_base=DEFAULT_URL, to_dir=os.curdir,
+    delay = 15
+):
+    """Download setuptools from a specified location and return its filename
+
+    `version` should be a valid setuptools version number that is available
+    as an egg for download under the `download_base` URL (which should end
+    with a '/'). `to_dir` is the directory where the egg will be downloaded.
+    `delay` is the number of seconds to pause before an actual download attempt.
+    """
+    import urllib2, shutil
+    egg_name = "setuptools-%s-py%s.egg" % (version,sys.version[:3])
+    url = download_base + egg_name
+    saveto = os.path.join(to_dir, egg_name)
+    src = dst = None
+    if not os.path.exists(saveto):  # Avoid repeated downloads
+        try:
+            from distutils import log
+            if delay:
+                log.warn("""
+---------------------------------------------------------------------------
+This script requires setuptools version %s to run (even to display
+help).  I will attempt to download it for you (from
+%s), but
+you may need to enable firewall access for this script first.
+I will start the download in %d seconds.
+
+(Note: if this machine does not have network access, please obtain the file
+
+   %s
+
+and place it in this directory before rerunning this script.)
+---------------------------------------------------------------------------""",
+                    version, download_base, delay, url
+                ); from time import sleep; sleep(delay)
+            log.warn("Downloading %s", url)
+            src = urllib2.urlopen(url)
+            # Read/write all in one block, so we don't create a corrupt file
+            # if the download is interrupted.
+            data = _validate_md5(egg_name, src.read())
+            dst = open(saveto,"wb"); dst.write(data)
+        finally:
+            if src: src.close()
+            if dst: dst.close()
+    return os.path.realpath(saveto)
+
+def main(argv, version=DEFAULT_VERSION):
+    """Install or upgrade setuptools and EasyInstall"""
+
+    try:
+        import setuptools
+    except ImportError:
+        egg = None
+        try:
+            egg = download_setuptools(version, delay=0)
+            sys.path.insert(0,egg)
+            from setuptools.command.easy_install import main
+            return main(list(argv)+[egg])   # we're done here
+        finally:
+            if egg and os.path.exists(egg):
+                os.unlink(egg)
+    else:
+        if setuptools.__version__ == '0.0.1':
+            # tell the user to uninstall obsolete version
+            use_setuptools(version)
+
+    req = "setuptools>="+version
+    import pkg_resources
+    try:
+        pkg_resources.require(req)
+    except pkg_resources.VersionConflict:
+        try:
+            from setuptools.command.easy_install import main
+        except ImportError:
+            from easy_install import main
+        main(list(argv)+[download_setuptools(delay=0)])
+        sys.exit(0) # try to force an exit
+    else:
+        if argv:
+            from setuptools.command.easy_install import main
+            main(argv)
+        else:
+            print "Setuptools version",version,"or greater has been installed."
+            print '(Run "ez_setup.py -U setuptools" to reinstall or upgrade.)'
+
+
+
+def update_md5(filenames):
+    """Update our built-in md5 registry"""
+
+    import re
+    from md5 import md5
+
+    for name in filenames:
+        base = os.path.basename(name)
+        f = open(name,'rb')
+        md5_data[base] = md5(f.read()).hexdigest()
+        f.close()
+
+    data = ["    %r: %r,\n" % it for it in md5_data.items()]
+    data.sort()
+    repl = "".join(data)
+
+    import inspect
+    srcfile = inspect.getsourcefile(sys.modules[__name__])
+    f = open(srcfile, 'rb'); src = f.read(); f.close()
+
+    match = re.search("\nmd5_data = {\n([^}]+)}", src)
+    if not match:
+        print >>sys.stderr, "Internal error!"
+        sys.exit(2)
+
+    src = src[:match.start(1)] + repl + src[match.end(1):]
+    f = open(srcfile,'w')
+    f.write(src)
+    f.close()
+
+
+if __name__=='__main__':
+    if len(sys.argv)>2 and sys.argv[1]=='--md5update':
+        update_md5(sys.argv[2:])
+    else:
+        main(sys.argv[1:])
+
+
+
+
+

Modified: mc/3D/CitcomS/trunk/module/Exchanger/Makefile.am
===================================================================
--- mc/3D/CitcomS/trunk/module/Exchanger/Makefile.am	2006-09-26 00:39:50 UTC (rev 4621)
+++ mc/3D/CitcomS/trunk/module/Exchanger/Makefile.am	2006-09-26 01:09:16 UTC (rev 4622)
@@ -42,14 +42,14 @@
 ExchangerLibmodule_la_LDFLAGS = -module -release $(VERSION)
 ExchangerLibmodule_la_LIBADD = \
 	$(top_builddir)/lib/libCitcomS.la \
-	-lExchanger \
-	-l_mpimodule -ljournal
+	$(PYTHON_EGG_LDFLAGS)
 ExchangerLibmodule_la_SOURCES = $(sources)
 
 CXX = $(MPICXX)
 CXXLD = @CXX@
 INCLUDES = \
 	-I$(top_srcdir)/lib \
+	$(PYTHON_EGG_CPPFLAGS) \
 	-I$(PYTHON_INCDIR) \
 	$(MPIINCLUDES)
 

Modified: mc/3D/CitcomS/trunk/module/Makefile.am
===================================================================
--- mc/3D/CitcomS/trunk/module/Makefile.am	2006-09-26 00:39:50 UTC (rev 4621)
+++ mc/3D/CitcomS/trunk/module/Makefile.am	2006-09-26 01:09:16 UTC (rev 4622)
@@ -23,7 +23,10 @@
 
 # $Id$
 
-SUBDIRS = Exchanger
+if COND_EXCHANGER
+    MAYBE_EXCHANGER = Exchanger
+endif
+SUBDIRS = $(MAYBE_EXCHANGER)
 
 noinst_LIBRARIES =
 pyexec_LTLIBRARIES =
@@ -53,7 +56,8 @@
 CitcomSLibmodule_la_LDFLAGS = -module -release $(VERSION)
 CitcomSLibmodule_la_LIBADD = \
 	$(top_builddir)/lib/libCitcomS.la \
-	-l_mpimodule -ljournal $(MPILIBS)
+	$(PYTHON_EGG_LDFLAGS) \
+	$(MPILIBS)
 CitcomSLibmodule_la_SOURCES = $(sources)
 
 PyxMPImodule_la_LDFLAGS = -module -release $(VERSION)
@@ -67,6 +71,7 @@
 INCLUDES = \
 	-I$(top_srcdir)/module/Regional \
 	-I$(top_srcdir)/lib \
+	$(PYTHON_EGG_CPPFLAGS) \
 	-I$(PYTHON_INCDIR) \
 	$(MPIINCLUDES)
 

Added: mc/3D/CitcomS/trunk/setup.py
===================================================================
--- mc/3D/CitcomS/trunk/setup.py	2006-09-26 00:39:50 UTC (rev 4621)
+++ mc/3D/CitcomS/trunk/setup.py	2006-09-26 01:09:16 UTC (rev 4622)
@@ -0,0 +1,27 @@
+
+# This is not a normal 'setup.py' script; it is provided as a
+# convenience to install Python packages required by CitcomS.  For
+# instructions on installing CitcomS itself, see the file INSTALL.
+
+from ez_setup import use_setuptools
+use_setuptools()
+
+import setuptools
+import sys
+
+requirements = []
+
+if setuptools.bootstrap_install_from:
+    requirements.append(setuptools.bootstrap_install_from)
+    setuptools.bootstrap_install_from = None
+
+requirements.append('pythia >= 0.8-1.0dev-r4617, < 0.8-2.0a, == dev')
+
+setuptools.setup(
+    script_args = (
+    ['easy_install',
+     '--find-links=svn://geodynamics.org/cig/cs/pythia/trunk#egg=pythia-dev'] +
+    sys.argv[1:] +
+    requirements
+    )
+)



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