[cig-commits] r6660 -
short/3D/PyLith/branches/pylith-0.8/doc/userguide/runpylith
willic3 at geodynamics.org
willic3 at geodynamics.org
Tue Apr 24 14:15:02 PDT 2007
Author: willic3
Date: 2007-04-24 14:15:01 -0700 (Tue, 24 Apr 2007)
New Revision: 6660
Modified:
short/3D/PyLith/branches/pylith-0.8/doc/userguide/runpylith/runpylith.lyx
Log:
Fixed end of section and created a revised table of PETSc settings.
Modified: short/3D/PyLith/branches/pylith-0.8/doc/userguide/runpylith/runpylith.lyx
===================================================================
--- short/3D/PyLith/branches/pylith-0.8/doc/userguide/runpylith/runpylith.lyx 2007-04-24 20:38:29 UTC (rev 6659)
+++ short/3D/PyLith/branches/pylith-0.8/doc/userguide/runpylith/runpylith.lyx 2007-04-24 21:15:01 UTC (rev 6660)
@@ -1,4 +1,4 @@
-#LyX 1.4.3 created this file. For more info see http://www.lyx.org/
+#LyX 1.4.4 created this file. For more info see http://www.lyx.org/
\lyxformat 245
\begin_document
\begin_header
@@ -308,6 +308,9 @@
\color none
Time steps for which full output is requested.
+\shape italic
+\color inherit
+Required for time-dependent problems.
\end_layout
\begin_layout Description
@@ -341,7 +344,6 @@
Local coordinate rotation information for boundary conditions.
\shape italic
-\color default
Not yet implemented.
\end_layout
@@ -355,7 +357,6 @@
File for changing default parameters.
\shape italic
-\color default
Now considered obsolete.
Use
\family typewriter
@@ -721,7 +722,11 @@
\begin_layout Standard
PyLith relies on PETSc for the linear algebra computations.
- Many PETSc options can be set using command-line arguments.
+ Many PETSc options can be set in
+\family typewriter
+.cfg
+\family default
+ files.
The ones of primary interest in the case of PyLith are shown in Table\InsetSpace ~
\begin_inset LatexCommand \ref{tab:Useful-command-line-arguments}
@@ -732,6 +737,10 @@
\end_layout
\begin_layout Standard
+
+\end_layout
+
+\begin_layout Standard
\begin_inset Float table
placement htbp
wide false
@@ -741,198 +750,247 @@
\begin_layout Standard
\align center
\begin_inset Tabular
-<lyxtabular version="3" rows="7" columns="2">
+<lyxtabular version="3" rows="7" columns="3">
<features>
-<column alignment="left" valignment="top" leftline="true" width="1.75in">
+<column alignment="left" valignment="top" leftline="true" width="1.3in">
+<column alignment="left" valignment="top" leftline="true" width="1.3in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="4in">
<row topline="true" bottomline="true">
-<cell alignment="left" valignment="top" usebox="none">
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
\begin_inset Text
\begin_layout Standard
\series bold
-Argument
+Property
\end_layout
\end_inset
</cell>
-<cell alignment="left" valignment="top" usebox="none">
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
\begin_inset Text
\begin_layout Standard
\series bold
-Description
+Default Value
\end_layout
\end_inset
</cell>
+<cell alignment="center" valignment="top" topline="true" leftline="true" rightline="true" usebox="none">
+\begin_inset Text
+
+\begin_layout Standard
+
+\series bold
+Description
+\end_layout
+
+\end_inset
+</cell>
</row>
-<row topline="true" bottomline="true">
-<cell alignment="left" valignment="top" topline="true" usebox="none">
+<row topline="true">
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
\begin_inset Text
\begin_layout Standard
\family typewriter
-\color black
--log_summary
+log_summary
\end_layout
\end_inset
</cell>
-<cell alignment="left" valignment="top" topline="true" usebox="none">
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
\begin_inset Text
\begin_layout Standard
-Print logging objects and events
+
+\shape italic
+true
\end_layout
\end_inset
</cell>
+<cell alignment="center" valignment="top" topline="true" leftline="true" rightline="true" usebox="none">
+\begin_inset Text
+
+\begin_layout Standard
+Print logging objects and events.
+\end_layout
+
+\end_inset
+</cell>
</row>
-<row bottomline="true">
-<cell alignment="left" valignment="top" usebox="none">
+<row topline="true">
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
\begin_inset Text
\begin_layout Standard
\family typewriter
-\color black
--pc_type
-\emph on
-bjacobi
+ksp_monitor
\end_layout
\end_inset
</cell>
-<cell alignment="left" valignment="top" usebox="none">
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
\begin_inset Text
\begin_layout Standard
-Set preconditioner type to block Jacobi.
- See PETSc documentation for a list of all preconditioner types.
-
+
+\shape italic
+true
\end_layout
\end_inset
</cell>
+<cell alignment="center" valignment="top" topline="true" leftline="true" rightline="true" usebox="none">
+\begin_inset Text
+
+\begin_layout Standard
+Dump preconditioned residual norm to stdout.
+\end_layout
+
+\end_inset
+</cell>
</row>
-<row bottomline="true">
-<cell alignment="left" valignment="top" usebox="none">
+<row topline="true">
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
\begin_inset Text
\begin_layout Standard
\family typewriter
-\color black
--sub_pc_type
-\emph on
-ilu
-\emph default
-
+ksp_view
\end_layout
\end_inset
</cell>
-<cell alignment="left" valignment="top" usebox="none">
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
\begin_inset Text
\begin_layout Standard
-Set preconditioner to incomplete factorization for each block.
- See PETSc documentation for a list of all preconditioners.
+
+\shape italic
+true
+\end_layout
+
+\end_inset
+</cell>
+<cell alignment="center" valignment="top" topline="true" leftline="true" rightline="true" usebox="none">
+\begin_inset Text
+
+\begin_layout Standard
+Print linear solver parameters.
\end_layout
\end_inset
</cell>
</row>
-<row bottomline="true">
-<cell alignment="left" valignment="top" usebox="none">
+<row topline="true">
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
\begin_inset Text
\begin_layout Standard
\family typewriter
-\color black
--ksp_monitor
-\emph on
-stdout
-\emph default
-
+ksp_rtol
\end_layout
\end_inset
</cell>
-<cell alignment="left" valignment="top" usebox="none">
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
\begin_inset Text
\begin_layout Standard
-Dump preconditioned residual norm to stdout.
- If only
-\family typewriter
-\color black
--ksp_monitor
-\family default
-\color none
- is given, the default is to use stdout.
-
+
+\shape italic
+1.0e-09
\end_layout
\end_inset
</cell>
+<cell alignment="center" valignment="top" topline="true" leftline="true" rightline="true" usebox="none">
+\begin_inset Text
+
+\begin_layout Standard
+Convergence tolerance for relative decrease in residual norm.
+\end_layout
+
+\end_inset
+</cell>
</row>
-<row bottomline="true">
-<cell alignment="left" valignment="top" usebox="none">
+<row topline="true">
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
\begin_inset Text
\begin_layout Standard
\family typewriter
-\color black
--ksp_view
+pc_type
\end_layout
\end_inset
</cell>
-<cell alignment="left" valignment="top" usebox="none">
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
\begin_inset Text
\begin_layout Standard
-Print linear solver parameters.
+
+\shape italic
+bjacobi
+\end_layout
+
+\end_inset
+</cell>
+<cell alignment="center" valignment="top" topline="true" leftline="true" rightline="true" usebox="none">
+\begin_inset Text
+
+\begin_layout Standard
+Set preconditioner type to block Jacobi.
+ See PETSc documentation for a list of all preconditioner types.
\end_layout
\end_inset
</cell>
</row>
-<row bottomline="true">
-<cell alignment="left" valignment="top" usebox="none">
+<row topline="true" bottomline="true">
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
\begin_inset Text
\begin_layout Standard
\family typewriter
-\color black
--ksp_rtol
-\emph on
-1.0e-09
-\emph default
-
+sub_pc_type
\end_layout
\end_inset
</cell>
-<cell alignment="left" valignment="top" usebox="none">
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
\begin_inset Text
\begin_layout Standard
-Tolerance for relative decrease in residual norm
+
+\shape italic
+ilu
\end_layout
\end_inset
</cell>
+<cell alignment="center" valignment="top" topline="true" leftline="true" rightline="true" usebox="none">
+\begin_inset Text
+
+\begin_layout Standard
+Set preconditioner to incomplete factorization for each block.
+ See PETSc documentation for a list of all preconditioners.
+\end_layout
+
+\end_inset
+</cell>
</row>
</lyxtabular>
@@ -954,27 +1012,8 @@
\end_layout
-\begin_layout Section
-Setting Pyre properties using
-\family typewriter
-.pml
-\family default
- files
-\end_layout
-
\begin_layout Standard
-PyLith's Pyre properties can also be set using
-\family typewriter
-\color black
-.pml
-\family default
-\color none
- files.
- These are XML files that follow a special Pyre XML schema.
-\end_layout
-\begin_layout Standard
-ADD STUFF HERE
\end_layout
\end_body
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