[cig-commits] r6101 - in long/3D/Gale/trunk/src/Underworld: .
InputFiles InputFiles/timingExamples
walter at geodynamics.org
walter at geodynamics.org
Fri Feb 23 11:49:10 PST 2007
Author: walter
Date: 2007-02-23 11:49:10 -0800 (Fri, 23 Feb 2007)
New Revision: 6101
Added:
long/3D/Gale/trunk/src/Underworld/InputFiles/timingExamples/
long/3D/Gale/trunk/src/Underworld/InputFiles/timingExamples/ExtensionNoVisuals_100x100x50.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/timingExamples/ExtensionNoVisuals_128x128x64.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/timingExamples/ExtensionNoVisuals_64x32x32.xml
long/3D/Gale/trunk/src/Underworld/InputFiles/timingExamples/ExtensionNoVisuals_64x64x32.xml
Modified:
long/3D/Gale/trunk/src/Underworld/
Log:
r828 at earth (orig r418): LouisMoresi | 2007-01-23 21:45:45 -0800
Adding some timing/reliablility examples to the underworld InputFiles directory. These should probably be completely flattened - at the moment I have just flattened the Underworld/InputFiles part.
Property changes on: long/3D/Gale/trunk/src/Underworld
___________________________________________________________________
Name: svk:merge
- 9570c393-cf10-0410-b476-9a651db1e55a:/cig:775
c24a034b-ab11-0410-afe6-cfe714e2959e:/branches/decomp3d:413
c24a034b-ab11-0410-afe6-cfe714e2959e:/trunk:396
+ 9570c393-cf10-0410-b476-9a651db1e55a:/cig:775
c24a034b-ab11-0410-afe6-cfe714e2959e:/branches/decomp3d:418
c24a034b-ab11-0410-afe6-cfe714e2959e:/trunk:396
Added: long/3D/Gale/trunk/src/Underworld/InputFiles/timingExamples/ExtensionNoVisuals_100x100x50.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/timingExamples/ExtensionNoVisuals_100x100x50.xml 2007-02-23 18:23:05 UTC (rev 6100)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/timingExamples/ExtensionNoVisuals_100x100x50.xml 2007-02-23 19:49:10 UTC (rev 6101)
@@ -0,0 +1,586 @@
+<?xml version="1.0"?>
+<StGermainData xmlns="http://www.vpac.org/StGermain/XML_IO_Handler/Jun2003">
+ <list name="plugins">
+ <param>Underworld_MovingMesh</param>
+ <param>StgFEM_StandardConditionFunctions</param>
+ <param>StgFEM_FrequentOutput</param>
+ <param>Underworld_Vrms</param>
+ <param>StgFEM_CPUTime</param>
+ </list>
+ <struct name="components">
+ <struct name="mesh-constant">
+ <param name="Type">FeMesh</param>
+ <param name="elementType">constant</param>
+ </struct>
+ <struct name="constantMesh-generator">
+ <param name="Type">C0Generator</param>
+ <param name="mesh">mesh-constant</param>
+ <param name="elementMesh">mesh-linear</param>
+ </struct>
+ <struct name="mesh-linear">
+ <param name="Type">FeMesh</param>
+ <param name="elementType">linear</param>
+ </struct>
+ <struct name="linearMesh-generator">
+ <param name="Type">CartesianGenerator</param>
+ <param name="mesh">mesh-linear</param>
+ <param name="dims">dim</param>
+ <param name="shadowDepth">shadowDepth</param>
+ <list name="size">
+ <param>elementResI</param>
+ <param>elementResJ</param>
+ <param>elementResK</param>
+ </list>
+ <list name="minCoord">
+ <param>minX</param>
+ <param>minY</param>
+ <param>minZ</param>
+ </list>
+ <list name="maxCoord">
+ <param>maxX</param>
+ <param>maxY</param>
+ <param>maxZ</param>
+ </list>
+ </struct>
+ <struct name="velocity">
+ <param name="Type">MeshVariable</param>
+ <param name="mesh">mesh-linear</param>
+ <param name="Rank">Vector</param>
+ <param name="DataType">Double</param>
+ <param name="VectorComponentCount">dim</param>
+ <list name="names">
+ <param>vx</param>
+ <param>vy</param>
+ <param>vz</param>
+ </list>
+ </struct>
+ <struct name="velocityBCs">
+ <param name="Type">CompositeVC</param>
+ <param name="Data">mesh-linear</param>
+ </struct>
+ <struct name="velocityICs">
+ <param name="Type">CompositeVC</param>
+ <param name="Data">mesh-linear</param>
+ </struct>
+ <struct name="velocityDofLayout">
+ <param name="Type">DofLayout</param>
+ <param name="mesh">mesh-linear</param>
+ <param name="BaseVariableCount">dim</param>
+ <list name="BaseVariables">
+ <param>vx</param>
+ <param>vy</param>
+ <param>vz</param>
+ </list>
+ </struct>
+ <struct name="VelocityField">
+ <param name="Type">FeVariable</param>
+ <param name="FEMesh">mesh-linear</param>
+ <param name="DofLayout">velocityDofLayout</param>
+ <param name="BC">velocityBCs</param>
+ <param name="IC">velocityICs</param>
+ <param name="LinkedDofInfo">velocityLinkedDofs</param>
+ </struct>
+ <struct name="VelocityMagnitudeField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">Magnitude</param>
+ <param name="FeVariable">VelocityField</param>
+ </struct>
+ <struct name="VelocityGradientsField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">Gradient</param>
+ <param name="FeVariable">VelocityField</param>
+ </struct>
+ <struct name="VelocityGradientsInvariantField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TensorInvariant</param>
+ <param name="FeVariable">VelocityGradientsField</param>
+ </struct>
+ <struct name="VelocityXXField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TakeFirstComponent</param>
+ <param name="FeVariable">VelocityField</param>
+ </struct>
+ <struct name="VelocityYYField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TakeSecondComponent</param>
+ <param name="FeVariable">VelocityField</param>
+ </struct>
+ <struct name="StrainRateField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TensorSymmetricPart</param>
+ <param name="FeVariable">VelocityGradientsField</param>
+ </struct>
+ <struct name="VorticityField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TensorAntisymmetricPart</param>
+ <param name="FeVariable">VelocityGradientsField</param>
+ </struct>
+ <struct name="StrainRateInvariantField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">SymmetricTensor_Invariant</param>
+ <param name="FeVariable">StrainRateField</param>
+ </struct>
+ <struct name="StrainRateXXField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TakeFirstComponent</param>
+ <param name="FeVariable">StrainRateField</param>
+ </struct>
+ <struct name="StrainRateYYField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TakeSecondComponent</param>
+ <param name="FeVariable">StrainRateField</param>
+ </struct>
+ <struct name="pressure">
+ <param name="Type">MeshVariable</param>
+ <param name="mesh">mesh-constant</param>
+ <param name="Rank">Scalar</param>
+ <param name="DataType">Double</param>
+ </struct>
+ <struct name="pressureDofLayout">
+ <param name="Type">DofLayout</param>
+ <param name="mesh">mesh-constant</param>
+ <list name="BaseVariables">
+ <param>pressure</param>
+ </list>
+ </struct>
+ <struct name="PressureField">
+ <param name="Type">FeVariable</param>
+ <param name="FEMesh">mesh-constant</param>
+ <param name="DofLayout">pressureDofLayout</param>
+ <param name="LinkedDofInfo">pressureLinkedDofs</param>
+ </struct>
+ <struct name="cellLayout">
+ <param name="Type">SingleCellLayout</param>
+ </struct>
+ <struct name="particleLayout">
+ <param name="Type">GaussParticleLayout</param>
+ </struct>
+ <struct name="gaussSwarm">
+ <param name="Type">IntegrationPointsSwarm</param>
+ <param name="CellLayout">cellLayout</param>
+ <param name="ParticleLayout">particleLayout</param>
+ <param name="FeMesh">mesh-linear</param>
+ <param name="TimeIntegrator">timeIntegrator</param>
+ <param name="IntegrationPointMapper">gaussMapper</param>
+ </struct>
+ <struct name="gaussMapper">
+ <param name="Type">GaussMapper</param>
+ <param name="IntegrationPointsSwarm">gaussSwarm</param>
+ <param name="MaterialPointsSwarm">gaussMaterialSwarm</param>
+ </struct>
+ <struct name="backgroundLayout">
+ <param name="Type">BackgroundParticleLayout</param>
+ </struct>
+ <struct name="gaussMaterialSwarm">
+ <param name="Type">MaterialPointsSwarm</param>
+ <param name="CellLayout">cellLayout</param>
+ <param name="ParticleLayout">backgroundLayout</param>
+ <param name="FeMesh">mesh-linear</param>
+ </struct>
+ <struct name="timeIntegrator">
+ <param name="Type">TimeIntegrator</param>
+ <param name="order">timeIntegratorOrder</param>
+ <param name="simultaneous">f</param>
+ <param name="Context">context</param>
+ </struct>
+ <struct name="elementCellLayout">
+ <param name="Type">ElementCellLayout</param>
+ <param name="Mesh">mesh-linear</param>
+ </struct>
+ <struct name="discreteVoronoi">
+ <param name="Type">CellularAutomataVoronoi</param>
+ <param name="resolution">10</param>
+ <param name="diagonalNeighbours">true</param>
+ </struct>
+ <struct name="weights">
+ <param name="Type">DVCWeights</param>
+ <param name="resolution">10</param>
+ </struct>
+ <struct name="localLayout">
+ <param name="Type">MappedParticleLayout</param>
+ </struct>
+ <struct name="picIntegrationPoints">
+ <param name="Type">IntegrationPointsSwarm</param>
+ <param name="CellLayout">elementCellLayout</param>
+ <param name="ParticleLayout">localLayout</param>
+ <param name="FeMesh">mesh-linear</param>
+ <param name="WeightsCalculator">weights</param>
+ <param name="TimeIntegrator">timeIntegrator</param>
+ <param name="IntegrationPointMapper">mapper</param>
+ </struct>
+ <struct name="mapper">
+ <param name="Type">CoincidentMapper</param>
+ <param name="IntegrationPointsSwarm">picIntegrationPoints</param>
+ <param name="MaterialPointsSwarm">materialSwarm</param>
+ </struct>
+ <struct name="materialSwarmParticleLayout">
+ <param name="Type">SpaceFillerParticleLayout</param>
+ <param name="averageInitialParticlesPerCell">particlesPerCell</param>
+ </struct>
+ <struct name="materialSwarm">
+ <param name="Type">MaterialPointsSwarm</param>
+ <param name="CellLayout">elementCellLayout</param>
+ <param name="ParticleLayout">materialSwarmParticleLayout</param>
+ <param name="FeMesh">mesh-linear</param>
+ <param name="SplittingRoutine">splittingRoutine</param>
+ <param name="RemovalRoutine">removalRoutine</param>
+ <param name="EscapedRoutine">escapedRoutine</param>
+ </struct>
+ <struct name="materialSwarmAdvector">
+ <param name="Type">SwarmAdvector</param>
+ <param name="Swarm">materialSwarm</param>
+ <param name="TimeIntegrator">timeIntegrator</param>
+ <param name="VelocityField">VelocityField</param>
+ <param name="PeriodicBCsManager">periodicBCsManager</param>
+ <param name="allowFallbackToFirstOrder">True</param>
+ </struct>
+ <struct name="solutionVelocity">
+ <param name="Type">SolutionVector</param>
+ <param name="FeVariable">VelocityField</param>
+ </struct>
+ <struct name="solutionPressure">
+ <param name="Type">SolutionVector</param>
+ <param name="FeVariable">PressureField</param>
+ </struct>
+ <struct name="mom_force">
+ <param name="Type">ForceVector</param>
+ <param name="FeVariable">VelocityField</param>
+ <param name="ExtraInfo">context</param>
+ </struct>
+ <struct name="cont_force">
+ <param name="Type">ForceVector</param>
+ <param name="FeVariable">PressureField</param>
+ <param name="ExtraInfo">context</param>
+ </struct>
+ <struct name="k_matrix">
+ <param name="Type">StiffnessMatrix</param>
+ <param name="RowVariable">VelocityField</param>
+ <param name="ColumnVariable">VelocityField</param>
+ <param name="RHS">mom_force</param>
+ <param name="allowZeroElementContributions">False</param>
+ </struct>
+ <struct name="constitutiveMatrix">
+ <param name="Type">ConstitutiveMatrixCartesian</param>
+ <param name="Swarm">picIntegrationPoints</param>
+ <param name="StiffnessMatrix">k_matrix</param>
+ </struct>
+ <struct name="g_matrix">
+ <param name="Type">StiffnessMatrix</param>
+ <param name="RowVariable">VelocityField</param>
+ <param name="ColumnVariable">PressureField</param>
+ <param name="RHS">cont_force</param>
+ <param name="allowZeroElementContributions">False</param>
+ </struct>
+ <struct name="gradientStiffnessMatrixTerm">
+ <param name="Type">GradientStiffnessMatrixTerm</param>
+ <param name="Swarm">gaussSwarm</param>
+ <param name="StiffnessMatrix">g_matrix</param>
+ </struct>
+ <struct name="preconditioner">
+ <param name="Type">StiffnessMatrix</param>
+ <param name="RowVariable">PressureField</param>
+ <param name="ColumnVariable">PressureField</param>
+ <param name="RHS">cont_force</param>
+ <param name="allowZeroElementContributions">True</param>
+ </struct>
+ <struct name="preconditionerTerm">
+ <param name="Type">UzawaPreconditionerTerm</param>
+ <param name="Swarm">picIntegrationPoints</param>
+ <param name="StiffnessMatrix">preconditioner</param>
+ </struct>
+ <struct name="uzawa">
+ <param name="Type">Stokes_SLE_UzawaSolver</param>
+ <param name="Preconditioner">preconditioner</param>
+ <param name="tolerance">5.0e-3</param>
+ <param name="maxIterations">1000</param>
+ <param name="useAbsoluteTolerance">False</param>
+ </struct>
+ <struct name="stokesEqn">
+ <param name="Type">Stokes_SLE</param>
+ <param name="SLE_Solver">uzawa</param>
+ <param name="Context">context</param>
+ <param name="StressTensorMatrix">k_matrix</param>
+ <param name="GradientMatrix">g_matrix</param>
+ <param name="DivergenceMatrix"></param>
+ <param name="CompressibilityMatrix">c_matrix</param>
+ <param name="VelocityVector">solutionVelocity</param>
+ <param name="PressureVector">solutionPressure</param>
+ <param name="ForceVector">mom_force</param>
+ <param name="ContinuityForceVector">cont_force</param>
+ <param name="killNonConvergent">false</param>
+ <param name="nonLinearMaxIterations">nonLinearMaxIterations</param>
+ <param name="nonLinearTolerance">nonLinearTolerance</param>
+ <param name="makeConvergenceFile">false</param>
+ </struct>
+ <struct name="c_matrix">
+ <param name="Type">StiffnessMatrix</param>
+ <param name="RowVariable">PressureField</param>
+ <param name="ColumnVariable">PressureField</param>
+ <param name="RHS">cont_force</param>
+ <param name="allowZeroElementContributions">True</param>
+ </struct>
+ <struct name="backgroundShape">
+ <param name="Type">Everywhere</param>
+ </struct>
+ <struct name="incompressibleShape">
+ <param name="Type">Box</param>
+ <param name="startX">minX</param>
+ <param name="endX">maxX</param>
+ <param name="startY">0.8</param>
+ <param name="endY">0.85</param>
+ <param name="startZ">minZ</param>
+ <param name="endZ">maxZ</param>
+ </struct>
+ <struct name="crustShape">
+ <param name="Type">Box</param>
+ <param name="startX">minX</param>
+ <param name="endX">maxX</param>
+ <param name="startY">0.4</param>
+ <param name="endY">0.8</param>
+ <param name="startZ">minZ</param>
+ <param name="endZ">maxZ</param>
+ </struct>
+ <struct name="weakZoneShape1">
+ <param name="Type">Box</param>
+ <param name="startX">0.775</param>
+ <param name="endX">0.825</param>
+ <param name="startY">0.4</param>
+ <param name="endY">0.45</param>
+ <param name="startZ">minZ</param>
+ <param name="endZ">0.66666</param>
+ </struct>
+ <struct name="weakZoneShape2">
+ <param name="Type">Box</param>
+ <param name="startX">1.175</param>
+ <param name="endX">1.225</param>
+ <param name="startY">0.4</param>
+ <param name="endY">0.45</param>
+ <param name="startZ">1.33333</param>
+ <param name="endZ">maxZ</param>
+ </struct>
+ <struct name="weakZoneShape">
+ <param name="Type">Union</param>
+ <list name="shapes">
+ <param>weakZoneShape1</param>
+ <param>weakZoneShape2</param>
+ </list>
+ </struct>
+ <struct name="crustShape2">
+ <param name="Type">Intersection</param>
+ <list name="shapes">
+ <param>crustShape</param>
+ <param>!weakZoneShape</param>
+ </list>
+ </struct>
+ <struct name="mantleShape">
+ <param name="Type">Box</param>
+ <param name="startX">minX</param>
+ <param name="endX">maxX</param>
+ <param name="startY">0.0</param>
+ <param name="endY">0.4</param>
+ <param name="startZ">minZ</param>
+ <param name="endZ">maxZ</param>
+ </struct>
+ <struct name="mantleShape2">
+ <param name="Type">Union</param>
+ <list name="shapes">
+ <param>mantleShape</param>
+ <param>weakZoneShape</param>
+ </list>
+ </struct>
+ <struct name="backgroundViscosity">
+ <param name="Type">MaterialViscosity</param>
+ <param name="eta0">1.0e-1</param>
+ </struct>
+ <struct name="compresibility">
+ <param name="Type">Compressible</param>
+ <param name="GeometryMesh">mesh-linear</param>
+ <param name="StiffnessMatrix">c_matrix</param>
+ <param name="Swarm">picIntegrationPoints</param>
+ <param name="oneOnLambda">10.0</param>
+ </struct>
+ <struct name="background">
+ <param name="Type">RheologyMaterial</param>
+ <param name="Shape">backgroundShape</param>
+ <param name="Compressible">compresibility</param>
+ <param name="Rheology">backgroundViscosity</param>
+ </struct>
+ <struct name="incompressible">
+ <param name="Type">RheologyMaterial</param>
+ <param name="Shape">incompressibleShape</param>
+ <param name="Rheology">backgroundViscosity</param>
+ </struct>
+ <struct name="crustViscosity">
+ <param name="Type">MaterialViscosity</param>
+ <param name="eta0">10.000</param>
+ </struct>
+ <struct name="strainWeakening">
+ <param name="Type">StrainWeakening</param>
+ <param name="TimeIntegrator">timeIntegrator</param>
+ <param name="MaterialPointsSwarm">materialSwarm</param>
+ <param name="softeningStrain">0.1</param>
+ <param name="initialDamageFraction">0.05</param>
+ <param name="initialDamageWavenumber">0.5</param>
+ <param name="initialDamageFactor">1.0</param>
+ <param name="healingRate">0.01</param>
+ </struct>
+ <struct name="yielding">
+ <param name="Type">FaultingMoresiMuhlhaus2006</param>
+ <param name="PressureField">PressureField</param>
+ <param name="VelocityGradientsField">VelocityGradientsField</param>
+ <param name="MaterialPointsSwarm">materialSwarm</param>
+ <param name="Director">director</param>
+ <param name="Context">context</param>
+ <param name="StrainWeakening">strainWeakening</param>
+ <param name="cohesion">15.0</param>
+ <param name="cohesionAfterSoftening">1.0</param>
+ <param name="frictionCoefficient">0.5</param>
+ <param name="frictionCoefficientAfterSoftening">0.01</param>
+ <param name="minimumYieldStress">0.0001</param>
+ <param name="ignoreOldOrientation">false</param>
+ </struct>
+ <struct name="director">
+ <param name="Type">Director</param>
+ <param name="TimeIntegrator">timeIntegrator</param>
+ <param name="VelocityGradientsField">VelocityGradientsField</param>
+ <param name="MaterialPointsSwarm">materialSwarm</param>
+ <param name="initialDirectionX">0.0</param>
+ <param name="initialDirectionY">1.0</param>
+ <param name="initialDirectionZ">0.0</param>
+ <param name="dontUpdate">True</param>
+ </struct>
+ <struct name="crust">
+ <param name="Type">RheologyMaterial</param>
+ <param name="Shape">crustShape2</param>
+ <list name="Rheology">
+ <param>crustViscosity</param>
+ <param>yielding</param>
+ </list>
+ </struct>
+ <struct name="mantleViscosity">
+ <param name="Type">MaterialViscosity</param>
+ <param name="eta0">1.000</param>
+ </struct>
+ <struct name="mantle">
+ <param name="Type">RheologyMaterial</param>
+ <param name="Shape">mantleShape2</param>
+ <param name="Rheology">mantleViscosity</param>
+ </struct>
+ <struct name="MantleField">
+ <param name="Type">MaterialFeVariable</param>
+ <param name="Swarm">picIntegrationPoints</param>
+ <param name="Material">mantle</param>
+ <param name="Context">context</param>
+ <param name="Mesh">mesh-linear</param>
+ </struct>
+ <struct name="CompressibleField">
+ <param name="Type">MaterialFeVariable</param>
+ <param name="Swarm">picIntegrationPoints</param>
+ <param name="Material">background</param>
+ <param name="Context">context</param>
+ <param name="Mesh">mesh-linear</param>
+ </struct>
+ </struct>
+ <param name="maxTimeSteps">20</param>
+ <param name="outputPath">./OutputFiles/ExtensionTimingExampleNoViz</param>
+ <param name="dumpEvery">1</param>
+ <param name="checkpointEvery">5</param>
+ <param name="nonLinearMaxIterations">10</param>
+ <param name="journal.info.Context-verbose">True</param>
+ <param name="journal-level.info.Stg_ComponentFactory">2</param>
+ <param name="journal.debug">t</param>
+ <param name="journal-enable-branch.debug.StgFEM">t</param>
+ <param name="journal-enable-branch.debug.lucDebug">t</param>
+ <param name="journal-level-branch.debug.lucDebug">2</param>
+ <param name="journal-level-branch.debug.StgFEM">2</param>
+ <param name="dim">3</param>
+ <param name="elementResI">100</param>
+ <param name="elementResJ">100</param>
+ <param name="elementResK">50</param>
+ <param name="shadowDepth">1</param>
+ <param name="minX">0.0</param>
+ <param name="minY">0.0</param>
+ <param name="minZ">0.0</param>
+ <param name="maxX">2.0</param>
+ <param name="maxY">1.0</param>
+ <param name="maxZ">1.0</param>
+ <param name="allowUnbalancing">True</param>
+ <param name="particlesPerCell">20</param>
+ <param name="cellParticleCount">20</param>
+ <param name="seed">13</param>
+ <struct name="velocityBCs">
+ <param name="type">CompositeVC</param>
+ <list name="vcList">
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">bottom</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vy</param>
+ <param name="type">double</param>
+ <param name="value">0</param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">left</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vx</param>
+ <param name="type">double</param>
+ <param name="value">-0.5</param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">right</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vx</param>
+ <param name="type">double</param>
+ <param name="value">0.5</param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">front</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vz</param>
+ <param name="type">double</param>
+ <param name="value">0</param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">back</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vz</param>
+ <param name="type">double</param>
+ <param name="value">0</param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">top</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vy</param>
+ <param name="type">double</param>
+ <param name="value">0</param>
+ </struct>
+ </list>
+ </struct>
+ </list>
+ </struct>
+ <param name="nonLinearTolerance">0.033</param>
+ <param name="killNonConvergent">f</param>
+ <param name="outputEvery">1</param>
+ <param name="experimentName">experiment</param>
+</StGermainData>
Added: long/3D/Gale/trunk/src/Underworld/InputFiles/timingExamples/ExtensionNoVisuals_128x128x64.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/timingExamples/ExtensionNoVisuals_128x128x64.xml 2007-02-23 18:23:05 UTC (rev 6100)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/timingExamples/ExtensionNoVisuals_128x128x64.xml 2007-02-23 19:49:10 UTC (rev 6101)
@@ -0,0 +1,586 @@
+<?xml version="1.0"?>
+<StGermainData xmlns="http://www.vpac.org/StGermain/XML_IO_Handler/Jun2003">
+ <list name="plugins">
+ <param>Underworld_MovingMesh</param>
+ <param>StgFEM_StandardConditionFunctions</param>
+ <param>StgFEM_FrequentOutput</param>
+ <param>Underworld_Vrms</param>
+ <param>StgFEM_CPUTime</param>
+ </list>
+ <struct name="components">
+ <struct name="mesh-constant">
+ <param name="Type">FeMesh</param>
+ <param name="elementType">constant</param>
+ </struct>
+ <struct name="constantMesh-generator">
+ <param name="Type">C0Generator</param>
+ <param name="mesh">mesh-constant</param>
+ <param name="elementMesh">mesh-linear</param>
+ </struct>
+ <struct name="mesh-linear">
+ <param name="Type">FeMesh</param>
+ <param name="elementType">linear</param>
+ </struct>
+ <struct name="linearMesh-generator">
+ <param name="Type">CartesianGenerator</param>
+ <param name="mesh">mesh-linear</param>
+ <param name="dims">dim</param>
+ <param name="shadowDepth">shadowDepth</param>
+ <list name="size">
+ <param>elementResI</param>
+ <param>elementResJ</param>
+ <param>elementResK</param>
+ </list>
+ <list name="minCoord">
+ <param>minX</param>
+ <param>minY</param>
+ <param>minZ</param>
+ </list>
+ <list name="maxCoord">
+ <param>maxX</param>
+ <param>maxY</param>
+ <param>maxZ</param>
+ </list>
+ </struct>
+ <struct name="velocity">
+ <param name="Type">MeshVariable</param>
+ <param name="mesh">mesh-linear</param>
+ <param name="Rank">Vector</param>
+ <param name="DataType">Double</param>
+ <param name="VectorComponentCount">dim</param>
+ <list name="names">
+ <param>vx</param>
+ <param>vy</param>
+ <param>vz</param>
+ </list>
+ </struct>
+ <struct name="velocityBCs">
+ <param name="Type">CompositeVC</param>
+ <param name="Data">mesh-linear</param>
+ </struct>
+ <struct name="velocityICs">
+ <param name="Type">CompositeVC</param>
+ <param name="Data">mesh-linear</param>
+ </struct>
+ <struct name="velocityDofLayout">
+ <param name="Type">DofLayout</param>
+ <param name="mesh">mesh-linear</param>
+ <param name="BaseVariableCount">dim</param>
+ <list name="BaseVariables">
+ <param>vx</param>
+ <param>vy</param>
+ <param>vz</param>
+ </list>
+ </struct>
+ <struct name="VelocityField">
+ <param name="Type">FeVariable</param>
+ <param name="FEMesh">mesh-linear</param>
+ <param name="DofLayout">velocityDofLayout</param>
+ <param name="BC">velocityBCs</param>
+ <param name="IC">velocityICs</param>
+ <param name="LinkedDofInfo">velocityLinkedDofs</param>
+ </struct>
+ <struct name="VelocityMagnitudeField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">Magnitude</param>
+ <param name="FeVariable">VelocityField</param>
+ </struct>
+ <struct name="VelocityGradientsField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">Gradient</param>
+ <param name="FeVariable">VelocityField</param>
+ </struct>
+ <struct name="VelocityGradientsInvariantField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TensorInvariant</param>
+ <param name="FeVariable">VelocityGradientsField</param>
+ </struct>
+ <struct name="VelocityXXField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TakeFirstComponent</param>
+ <param name="FeVariable">VelocityField</param>
+ </struct>
+ <struct name="VelocityYYField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TakeSecondComponent</param>
+ <param name="FeVariable">VelocityField</param>
+ </struct>
+ <struct name="StrainRateField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TensorSymmetricPart</param>
+ <param name="FeVariable">VelocityGradientsField</param>
+ </struct>
+ <struct name="VorticityField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TensorAntisymmetricPart</param>
+ <param name="FeVariable">VelocityGradientsField</param>
+ </struct>
+ <struct name="StrainRateInvariantField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">SymmetricTensor_Invariant</param>
+ <param name="FeVariable">StrainRateField</param>
+ </struct>
+ <struct name="StrainRateXXField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TakeFirstComponent</param>
+ <param name="FeVariable">StrainRateField</param>
+ </struct>
+ <struct name="StrainRateYYField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TakeSecondComponent</param>
+ <param name="FeVariable">StrainRateField</param>
+ </struct>
+ <struct name="pressure">
+ <param name="Type">MeshVariable</param>
+ <param name="mesh">mesh-constant</param>
+ <param name="Rank">Scalar</param>
+ <param name="DataType">Double</param>
+ </struct>
+ <struct name="pressureDofLayout">
+ <param name="Type">DofLayout</param>
+ <param name="mesh">mesh-constant</param>
+ <list name="BaseVariables">
+ <param>pressure</param>
+ </list>
+ </struct>
+ <struct name="PressureField">
+ <param name="Type">FeVariable</param>
+ <param name="FEMesh">mesh-constant</param>
+ <param name="DofLayout">pressureDofLayout</param>
+ <param name="LinkedDofInfo">pressureLinkedDofs</param>
+ </struct>
+ <struct name="cellLayout">
+ <param name="Type">SingleCellLayout</param>
+ </struct>
+ <struct name="particleLayout">
+ <param name="Type">GaussParticleLayout</param>
+ </struct>
+ <struct name="gaussSwarm">
+ <param name="Type">IntegrationPointsSwarm</param>
+ <param name="CellLayout">cellLayout</param>
+ <param name="ParticleLayout">particleLayout</param>
+ <param name="FeMesh">mesh-linear</param>
+ <param name="TimeIntegrator">timeIntegrator</param>
+ <param name="IntegrationPointMapper">gaussMapper</param>
+ </struct>
+ <struct name="gaussMapper">
+ <param name="Type">GaussMapper</param>
+ <param name="IntegrationPointsSwarm">gaussSwarm</param>
+ <param name="MaterialPointsSwarm">gaussMaterialSwarm</param>
+ </struct>
+ <struct name="backgroundLayout">
+ <param name="Type">BackgroundParticleLayout</param>
+ </struct>
+ <struct name="gaussMaterialSwarm">
+ <param name="Type">MaterialPointsSwarm</param>
+ <param name="CellLayout">cellLayout</param>
+ <param name="ParticleLayout">backgroundLayout</param>
+ <param name="FeMesh">mesh-linear</param>
+ </struct>
+ <struct name="timeIntegrator">
+ <param name="Type">TimeIntegrator</param>
+ <param name="order">timeIntegratorOrder</param>
+ <param name="simultaneous">f</param>
+ <param name="Context">context</param>
+ </struct>
+ <struct name="elementCellLayout">
+ <param name="Type">ElementCellLayout</param>
+ <param name="Mesh">mesh-linear</param>
+ </struct>
+ <struct name="discreteVoronoi">
+ <param name="Type">CellularAutomataVoronoi</param>
+ <param name="resolution">10</param>
+ <param name="diagonalNeighbours">true</param>
+ </struct>
+ <struct name="weights">
+ <param name="Type">DVCWeights</param>
+ <param name="resolution">10</param>
+ </struct>
+ <struct name="localLayout">
+ <param name="Type">MappedParticleLayout</param>
+ </struct>
+ <struct name="picIntegrationPoints">
+ <param name="Type">IntegrationPointsSwarm</param>
+ <param name="CellLayout">elementCellLayout</param>
+ <param name="ParticleLayout">localLayout</param>
+ <param name="FeMesh">mesh-linear</param>
+ <param name="WeightsCalculator">weights</param>
+ <param name="TimeIntegrator">timeIntegrator</param>
+ <param name="IntegrationPointMapper">mapper</param>
+ </struct>
+ <struct name="mapper">
+ <param name="Type">CoincidentMapper</param>
+ <param name="IntegrationPointsSwarm">picIntegrationPoints</param>
+ <param name="MaterialPointsSwarm">materialSwarm</param>
+ </struct>
+ <struct name="materialSwarmParticleLayout">
+ <param name="Type">SpaceFillerParticleLayout</param>
+ <param name="averageInitialParticlesPerCell">particlesPerCell</param>
+ </struct>
+ <struct name="materialSwarm">
+ <param name="Type">MaterialPointsSwarm</param>
+ <param name="CellLayout">elementCellLayout</param>
+ <param name="ParticleLayout">materialSwarmParticleLayout</param>
+ <param name="FeMesh">mesh-linear</param>
+ <param name="SplittingRoutine">splittingRoutine</param>
+ <param name="RemovalRoutine">removalRoutine</param>
+ <param name="EscapedRoutine">escapedRoutine</param>
+ </struct>
+ <struct name="materialSwarmAdvector">
+ <param name="Type">SwarmAdvector</param>
+ <param name="Swarm">materialSwarm</param>
+ <param name="TimeIntegrator">timeIntegrator</param>
+ <param name="VelocityField">VelocityField</param>
+ <param name="PeriodicBCsManager">periodicBCsManager</param>
+ <param name="allowFallbackToFirstOrder">True</param>
+ </struct>
+ <struct name="solutionVelocity">
+ <param name="Type">SolutionVector</param>
+ <param name="FeVariable">VelocityField</param>
+ </struct>
+ <struct name="solutionPressure">
+ <param name="Type">SolutionVector</param>
+ <param name="FeVariable">PressureField</param>
+ </struct>
+ <struct name="mom_force">
+ <param name="Type">ForceVector</param>
+ <param name="FeVariable">VelocityField</param>
+ <param name="ExtraInfo">context</param>
+ </struct>
+ <struct name="cont_force">
+ <param name="Type">ForceVector</param>
+ <param name="FeVariable">PressureField</param>
+ <param name="ExtraInfo">context</param>
+ </struct>
+ <struct name="k_matrix">
+ <param name="Type">StiffnessMatrix</param>
+ <param name="RowVariable">VelocityField</param>
+ <param name="ColumnVariable">VelocityField</param>
+ <param name="RHS">mom_force</param>
+ <param name="allowZeroElementContributions">False</param>
+ </struct>
+ <struct name="constitutiveMatrix">
+ <param name="Type">ConstitutiveMatrixCartesian</param>
+ <param name="Swarm">picIntegrationPoints</param>
+ <param name="StiffnessMatrix">k_matrix</param>
+ </struct>
+ <struct name="g_matrix">
+ <param name="Type">StiffnessMatrix</param>
+ <param name="RowVariable">VelocityField</param>
+ <param name="ColumnVariable">PressureField</param>
+ <param name="RHS">cont_force</param>
+ <param name="allowZeroElementContributions">False</param>
+ </struct>
+ <struct name="gradientStiffnessMatrixTerm">
+ <param name="Type">GradientStiffnessMatrixTerm</param>
+ <param name="Swarm">gaussSwarm</param>
+ <param name="StiffnessMatrix">g_matrix</param>
+ </struct>
+ <struct name="preconditioner">
+ <param name="Type">StiffnessMatrix</param>
+ <param name="RowVariable">PressureField</param>
+ <param name="ColumnVariable">PressureField</param>
+ <param name="RHS">cont_force</param>
+ <param name="allowZeroElementContributions">True</param>
+ </struct>
+ <struct name="preconditionerTerm">
+ <param name="Type">UzawaPreconditionerTerm</param>
+ <param name="Swarm">picIntegrationPoints</param>
+ <param name="StiffnessMatrix">preconditioner</param>
+ </struct>
+ <struct name="uzawa">
+ <param name="Type">Stokes_SLE_UzawaSolver</param>
+ <param name="Preconditioner">preconditioner</param>
+ <param name="tolerance">5.0e-3</param>
+ <param name="maxIterations">1000</param>
+ <param name="useAbsoluteTolerance">False</param>
+ </struct>
+ <struct name="stokesEqn">
+ <param name="Type">Stokes_SLE</param>
+ <param name="SLE_Solver">uzawa</param>
+ <param name="Context">context</param>
+ <param name="StressTensorMatrix">k_matrix</param>
+ <param name="GradientMatrix">g_matrix</param>
+ <param name="DivergenceMatrix"></param>
+ <param name="CompressibilityMatrix">c_matrix</param>
+ <param name="VelocityVector">solutionVelocity</param>
+ <param name="PressureVector">solutionPressure</param>
+ <param name="ForceVector">mom_force</param>
+ <param name="ContinuityForceVector">cont_force</param>
+ <param name="killNonConvergent">false</param>
+ <param name="nonLinearMaxIterations">nonLinearMaxIterations</param>
+ <param name="nonLinearTolerance">nonLinearTolerance</param>
+ <param name="makeConvergenceFile">false</param>
+ </struct>
+ <struct name="c_matrix">
+ <param name="Type">StiffnessMatrix</param>
+ <param name="RowVariable">PressureField</param>
+ <param name="ColumnVariable">PressureField</param>
+ <param name="RHS">cont_force</param>
+ <param name="allowZeroElementContributions">True</param>
+ </struct>
+ <struct name="backgroundShape">
+ <param name="Type">Everywhere</param>
+ </struct>
+ <struct name="incompressibleShape">
+ <param name="Type">Box</param>
+ <param name="startX">minX</param>
+ <param name="endX">maxX</param>
+ <param name="startY">0.8</param>
+ <param name="endY">0.85</param>
+ <param name="startZ">minZ</param>
+ <param name="endZ">maxZ</param>
+ </struct>
+ <struct name="crustShape">
+ <param name="Type">Box</param>
+ <param name="startX">minX</param>
+ <param name="endX">maxX</param>
+ <param name="startY">0.4</param>
+ <param name="endY">0.8</param>
+ <param name="startZ">minZ</param>
+ <param name="endZ">maxZ</param>
+ </struct>
+ <struct name="weakZoneShape1">
+ <param name="Type">Box</param>
+ <param name="startX">0.775</param>
+ <param name="endX">0.825</param>
+ <param name="startY">0.4</param>
+ <param name="endY">0.45</param>
+ <param name="startZ">minZ</param>
+ <param name="endZ">0.66666</param>
+ </struct>
+ <struct name="weakZoneShape2">
+ <param name="Type">Box</param>
+ <param name="startX">1.175</param>
+ <param name="endX">1.225</param>
+ <param name="startY">0.4</param>
+ <param name="endY">0.45</param>
+ <param name="startZ">1.33333</param>
+ <param name="endZ">maxZ</param>
+ </struct>
+ <struct name="weakZoneShape">
+ <param name="Type">Union</param>
+ <list name="shapes">
+ <param>weakZoneShape1</param>
+ <param>weakZoneShape2</param>
+ </list>
+ </struct>
+ <struct name="crustShape2">
+ <param name="Type">Intersection</param>
+ <list name="shapes">
+ <param>crustShape</param>
+ <param>!weakZoneShape</param>
+ </list>
+ </struct>
+ <struct name="mantleShape">
+ <param name="Type">Box</param>
+ <param name="startX">minX</param>
+ <param name="endX">maxX</param>
+ <param name="startY">0.0</param>
+ <param name="endY">0.4</param>
+ <param name="startZ">minZ</param>
+ <param name="endZ">maxZ</param>
+ </struct>
+ <struct name="mantleShape2">
+ <param name="Type">Union</param>
+ <list name="shapes">
+ <param>mantleShape</param>
+ <param>weakZoneShape</param>
+ </list>
+ </struct>
+ <struct name="backgroundViscosity">
+ <param name="Type">MaterialViscosity</param>
+ <param name="eta0">1.0e-1</param>
+ </struct>
+ <struct name="compresibility">
+ <param name="Type">Compressible</param>
+ <param name="GeometryMesh">mesh-linear</param>
+ <param name="StiffnessMatrix">c_matrix</param>
+ <param name="Swarm">picIntegrationPoints</param>
+ <param name="oneOnLambda">10.0</param>
+ </struct>
+ <struct name="background">
+ <param name="Type">RheologyMaterial</param>
+ <param name="Shape">backgroundShape</param>
+ <param name="Compressible">compresibility</param>
+ <param name="Rheology">backgroundViscosity</param>
+ </struct>
+ <struct name="incompressible">
+ <param name="Type">RheologyMaterial</param>
+ <param name="Shape">incompressibleShape</param>
+ <param name="Rheology">backgroundViscosity</param>
+ </struct>
+ <struct name="crustViscosity">
+ <param name="Type">MaterialViscosity</param>
+ <param name="eta0">10.000</param>
+ </struct>
+ <struct name="strainWeakening">
+ <param name="Type">StrainWeakening</param>
+ <param name="TimeIntegrator">timeIntegrator</param>
+ <param name="MaterialPointsSwarm">materialSwarm</param>
+ <param name="softeningStrain">0.1</param>
+ <param name="initialDamageFraction">0.05</param>
+ <param name="initialDamageWavenumber">0.5</param>
+ <param name="initialDamageFactor">1.0</param>
+ <param name="healingRate">0.01</param>
+ </struct>
+ <struct name="yielding">
+ <param name="Type">FaultingMoresiMuhlhaus2006</param>
+ <param name="PressureField">PressureField</param>
+ <param name="VelocityGradientsField">VelocityGradientsField</param>
+ <param name="MaterialPointsSwarm">materialSwarm</param>
+ <param name="Director">director</param>
+ <param name="Context">context</param>
+ <param name="StrainWeakening">strainWeakening</param>
+ <param name="cohesion">15.0</param>
+ <param name="cohesionAfterSoftening">1.0</param>
+ <param name="frictionCoefficient">0.5</param>
+ <param name="frictionCoefficientAfterSoftening">0.01</param>
+ <param name="minimumYieldStress">0.0001</param>
+ <param name="ignoreOldOrientation">false</param>
+ </struct>
+ <struct name="director">
+ <param name="Type">Director</param>
+ <param name="TimeIntegrator">timeIntegrator</param>
+ <param name="VelocityGradientsField">VelocityGradientsField</param>
+ <param name="MaterialPointsSwarm">materialSwarm</param>
+ <param name="initialDirectionX">0.0</param>
+ <param name="initialDirectionY">1.0</param>
+ <param name="initialDirectionZ">0.0</param>
+ <param name="dontUpdate">True</param>
+ </struct>
+ <struct name="crust">
+ <param name="Type">RheologyMaterial</param>
+ <param name="Shape">crustShape2</param>
+ <list name="Rheology">
+ <param>crustViscosity</param>
+ <param>yielding</param>
+ </list>
+ </struct>
+ <struct name="mantleViscosity">
+ <param name="Type">MaterialViscosity</param>
+ <param name="eta0">1.000</param>
+ </struct>
+ <struct name="mantle">
+ <param name="Type">RheologyMaterial</param>
+ <param name="Shape">mantleShape2</param>
+ <param name="Rheology">mantleViscosity</param>
+ </struct>
+ <struct name="MantleField">
+ <param name="Type">MaterialFeVariable</param>
+ <param name="Swarm">picIntegrationPoints</param>
+ <param name="Material">mantle</param>
+ <param name="Context">context</param>
+ <param name="Mesh">mesh-linear</param>
+ </struct>
+ <struct name="CompressibleField">
+ <param name="Type">MaterialFeVariable</param>
+ <param name="Swarm">picIntegrationPoints</param>
+ <param name="Material">background</param>
+ <param name="Context">context</param>
+ <param name="Mesh">mesh-linear</param>
+ </struct>
+ </struct>
+ <param name="maxTimeSteps">20</param>
+ <param name="outputPath">./OutputFiles/ExtensionTimingExampleNoViz</param>
+ <param name="dumpEvery">1</param>
+ <param name="checkpointEvery">5</param>
+ <param name="nonLinearMaxIterations">10</param>
+ <param name="journal.info.Context-verbose">True</param>
+ <param name="journal-level.info.Stg_ComponentFactory">2</param>
+ <param name="journal.debug">t</param>
+ <param name="journal-enable-branch.debug.StgFEM">t</param>
+ <param name="journal-enable-branch.debug.lucDebug">t</param>
+ <param name="journal-level-branch.debug.lucDebug">2</param>
+ <param name="journal-level-branch.debug.StgFEM">2</param>
+ <param name="dim">3</param>
+ <param name="elementResI">128</param>
+ <param name="elementResJ">128</param>
+ <param name="elementResK">64</param>
+ <param name="shadowDepth">1</param>
+ <param name="minX">0.0</param>
+ <param name="minY">0.0</param>
+ <param name="minZ">0.0</param>
+ <param name="maxX">2.0</param>
+ <param name="maxY">1.0</param>
+ <param name="maxZ">1.0</param>
+ <param name="allowUnbalancing">True</param>
+ <param name="particlesPerCell">20</param>
+ <param name="cellParticleCount">20</param>
+ <param name="seed">13</param>
+ <struct name="velocityBCs">
+ <param name="type">CompositeVC</param>
+ <list name="vcList">
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">bottom</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vy</param>
+ <param name="type">double</param>
+ <param name="value">0</param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">left</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vx</param>
+ <param name="type">double</param>
+ <param name="value">-0.5</param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">right</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vx</param>
+ <param name="type">double</param>
+ <param name="value">0.5</param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">front</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vz</param>
+ <param name="type">double</param>
+ <param name="value">0</param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">back</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vz</param>
+ <param name="type">double</param>
+ <param name="value">0</param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">top</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vy</param>
+ <param name="type">double</param>
+ <param name="value">0</param>
+ </struct>
+ </list>
+ </struct>
+ </list>
+ </struct>
+ <param name="nonLinearTolerance">0.033</param>
+ <param name="killNonConvergent">f</param>
+ <param name="outputEvery">1</param>
+ <param name="experimentName">experiment</param>
+</StGermainData>
Added: long/3D/Gale/trunk/src/Underworld/InputFiles/timingExamples/ExtensionNoVisuals_64x32x32.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/timingExamples/ExtensionNoVisuals_64x32x32.xml 2007-02-23 18:23:05 UTC (rev 6100)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/timingExamples/ExtensionNoVisuals_64x32x32.xml 2007-02-23 19:49:10 UTC (rev 6101)
@@ -0,0 +1,586 @@
+<?xml version="1.0"?>
+<StGermainData xmlns="http://www.vpac.org/StGermain/XML_IO_Handler/Jun2003">
+ <list name="plugins">
+ <param>Underworld_MovingMesh</param>
+ <param>StgFEM_StandardConditionFunctions</param>
+ <param>StgFEM_FrequentOutput</param>
+ <param>Underworld_Vrms</param>
+ <param>StgFEM_CPUTime</param>
+ </list>
+ <struct name="components">
+ <struct name="mesh-constant">
+ <param name="Type">FeMesh</param>
+ <param name="elementType">constant</param>
+ </struct>
+ <struct name="constantMesh-generator">
+ <param name="Type">C0Generator</param>
+ <param name="mesh">mesh-constant</param>
+ <param name="elementMesh">mesh-linear</param>
+ </struct>
+ <struct name="mesh-linear">
+ <param name="Type">FeMesh</param>
+ <param name="elementType">linear</param>
+ </struct>
+ <struct name="linearMesh-generator">
+ <param name="Type">CartesianGenerator</param>
+ <param name="mesh">mesh-linear</param>
+ <param name="dims">dim</param>
+ <param name="shadowDepth">shadowDepth</param>
+ <list name="size">
+ <param>elementResI</param>
+ <param>elementResJ</param>
+ <param>elementResK</param>
+ </list>
+ <list name="minCoord">
+ <param>minX</param>
+ <param>minY</param>
+ <param>minZ</param>
+ </list>
+ <list name="maxCoord">
+ <param>maxX</param>
+ <param>maxY</param>
+ <param>maxZ</param>
+ </list>
+ </struct>
+ <struct name="velocity">
+ <param name="Type">MeshVariable</param>
+ <param name="mesh">mesh-linear</param>
+ <param name="Rank">Vector</param>
+ <param name="DataType">Double</param>
+ <param name="VectorComponentCount">dim</param>
+ <list name="names">
+ <param>vx</param>
+ <param>vy</param>
+ <param>vz</param>
+ </list>
+ </struct>
+ <struct name="velocityBCs">
+ <param name="Type">CompositeVC</param>
+ <param name="Data">mesh-linear</param>
+ </struct>
+ <struct name="velocityICs">
+ <param name="Type">CompositeVC</param>
+ <param name="Data">mesh-linear</param>
+ </struct>
+ <struct name="velocityDofLayout">
+ <param name="Type">DofLayout</param>
+ <param name="mesh">mesh-linear</param>
+ <param name="BaseVariableCount">dim</param>
+ <list name="BaseVariables">
+ <param>vx</param>
+ <param>vy</param>
+ <param>vz</param>
+ </list>
+ </struct>
+ <struct name="VelocityField">
+ <param name="Type">FeVariable</param>
+ <param name="FEMesh">mesh-linear</param>
+ <param name="DofLayout">velocityDofLayout</param>
+ <param name="BC">velocityBCs</param>
+ <param name="IC">velocityICs</param>
+ <param name="LinkedDofInfo">velocityLinkedDofs</param>
+ </struct>
+ <struct name="VelocityMagnitudeField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">Magnitude</param>
+ <param name="FeVariable">VelocityField</param>
+ </struct>
+ <struct name="VelocityGradientsField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">Gradient</param>
+ <param name="FeVariable">VelocityField</param>
+ </struct>
+ <struct name="VelocityGradientsInvariantField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TensorInvariant</param>
+ <param name="FeVariable">VelocityGradientsField</param>
+ </struct>
+ <struct name="VelocityXXField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TakeFirstComponent</param>
+ <param name="FeVariable">VelocityField</param>
+ </struct>
+ <struct name="VelocityYYField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TakeSecondComponent</param>
+ <param name="FeVariable">VelocityField</param>
+ </struct>
+ <struct name="StrainRateField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TensorSymmetricPart</param>
+ <param name="FeVariable">VelocityGradientsField</param>
+ </struct>
+ <struct name="VorticityField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TensorAntisymmetricPart</param>
+ <param name="FeVariable">VelocityGradientsField</param>
+ </struct>
+ <struct name="StrainRateInvariantField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">SymmetricTensor_Invariant</param>
+ <param name="FeVariable">StrainRateField</param>
+ </struct>
+ <struct name="StrainRateXXField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TakeFirstComponent</param>
+ <param name="FeVariable">StrainRateField</param>
+ </struct>
+ <struct name="StrainRateYYField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TakeSecondComponent</param>
+ <param name="FeVariable">StrainRateField</param>
+ </struct>
+ <struct name="pressure">
+ <param name="Type">MeshVariable</param>
+ <param name="mesh">mesh-constant</param>
+ <param name="Rank">Scalar</param>
+ <param name="DataType">Double</param>
+ </struct>
+ <struct name="pressureDofLayout">
+ <param name="Type">DofLayout</param>
+ <param name="mesh">mesh-constant</param>
+ <list name="BaseVariables">
+ <param>pressure</param>
+ </list>
+ </struct>
+ <struct name="PressureField">
+ <param name="Type">FeVariable</param>
+ <param name="FEMesh">mesh-constant</param>
+ <param name="DofLayout">pressureDofLayout</param>
+ <param name="LinkedDofInfo">pressureLinkedDofs</param>
+ </struct>
+ <struct name="cellLayout">
+ <param name="Type">SingleCellLayout</param>
+ </struct>
+ <struct name="particleLayout">
+ <param name="Type">GaussParticleLayout</param>
+ </struct>
+ <struct name="gaussSwarm">
+ <param name="Type">IntegrationPointsSwarm</param>
+ <param name="CellLayout">cellLayout</param>
+ <param name="ParticleLayout">particleLayout</param>
+ <param name="FeMesh">mesh-linear</param>
+ <param name="TimeIntegrator">timeIntegrator</param>
+ <param name="IntegrationPointMapper">gaussMapper</param>
+ </struct>
+ <struct name="gaussMapper">
+ <param name="Type">GaussMapper</param>
+ <param name="IntegrationPointsSwarm">gaussSwarm</param>
+ <param name="MaterialPointsSwarm">gaussMaterialSwarm</param>
+ </struct>
+ <struct name="backgroundLayout">
+ <param name="Type">BackgroundParticleLayout</param>
+ </struct>
+ <struct name="gaussMaterialSwarm">
+ <param name="Type">MaterialPointsSwarm</param>
+ <param name="CellLayout">cellLayout</param>
+ <param name="ParticleLayout">backgroundLayout</param>
+ <param name="FeMesh">mesh-linear</param>
+ </struct>
+ <struct name="timeIntegrator">
+ <param name="Type">TimeIntegrator</param>
+ <param name="order">timeIntegratorOrder</param>
+ <param name="simultaneous">f</param>
+ <param name="Context">context</param>
+ </struct>
+ <struct name="elementCellLayout">
+ <param name="Type">ElementCellLayout</param>
+ <param name="Mesh">mesh-linear</param>
+ </struct>
+ <struct name="discreteVoronoi">
+ <param name="Type">CellularAutomataVoronoi</param>
+ <param name="resolution">10</param>
+ <param name="diagonalNeighbours">true</param>
+ </struct>
+ <struct name="weights">
+ <param name="Type">DVCWeights</param>
+ <param name="resolution">10</param>
+ </struct>
+ <struct name="localLayout">
+ <param name="Type">MappedParticleLayout</param>
+ </struct>
+ <struct name="picIntegrationPoints">
+ <param name="Type">IntegrationPointsSwarm</param>
+ <param name="CellLayout">elementCellLayout</param>
+ <param name="ParticleLayout">localLayout</param>
+ <param name="FeMesh">mesh-linear</param>
+ <param name="WeightsCalculator">weights</param>
+ <param name="TimeIntegrator">timeIntegrator</param>
+ <param name="IntegrationPointMapper">mapper</param>
+ </struct>
+ <struct name="mapper">
+ <param name="Type">CoincidentMapper</param>
+ <param name="IntegrationPointsSwarm">picIntegrationPoints</param>
+ <param name="MaterialPointsSwarm">materialSwarm</param>
+ </struct>
+ <struct name="materialSwarmParticleLayout">
+ <param name="Type">SpaceFillerParticleLayout</param>
+ <param name="averageInitialParticlesPerCell">particlesPerCell</param>
+ </struct>
+ <struct name="materialSwarm">
+ <param name="Type">MaterialPointsSwarm</param>
+ <param name="CellLayout">elementCellLayout</param>
+ <param name="ParticleLayout">materialSwarmParticleLayout</param>
+ <param name="FeMesh">mesh-linear</param>
+ <param name="SplittingRoutine">splittingRoutine</param>
+ <param name="RemovalRoutine">removalRoutine</param>
+ <param name="EscapedRoutine">escapedRoutine</param>
+ </struct>
+ <struct name="materialSwarmAdvector">
+ <param name="Type">SwarmAdvector</param>
+ <param name="Swarm">materialSwarm</param>
+ <param name="TimeIntegrator">timeIntegrator</param>
+ <param name="VelocityField">VelocityField</param>
+ <param name="PeriodicBCsManager">periodicBCsManager</param>
+ <param name="allowFallbackToFirstOrder">True</param>
+ </struct>
+ <struct name="solutionVelocity">
+ <param name="Type">SolutionVector</param>
+ <param name="FeVariable">VelocityField</param>
+ </struct>
+ <struct name="solutionPressure">
+ <param name="Type">SolutionVector</param>
+ <param name="FeVariable">PressureField</param>
+ </struct>
+ <struct name="mom_force">
+ <param name="Type">ForceVector</param>
+ <param name="FeVariable">VelocityField</param>
+ <param name="ExtraInfo">context</param>
+ </struct>
+ <struct name="cont_force">
+ <param name="Type">ForceVector</param>
+ <param name="FeVariable">PressureField</param>
+ <param name="ExtraInfo">context</param>
+ </struct>
+ <struct name="k_matrix">
+ <param name="Type">StiffnessMatrix</param>
+ <param name="RowVariable">VelocityField</param>
+ <param name="ColumnVariable">VelocityField</param>
+ <param name="RHS">mom_force</param>
+ <param name="allowZeroElementContributions">False</param>
+ </struct>
+ <struct name="constitutiveMatrix">
+ <param name="Type">ConstitutiveMatrixCartesian</param>
+ <param name="Swarm">picIntegrationPoints</param>
+ <param name="StiffnessMatrix">k_matrix</param>
+ </struct>
+ <struct name="g_matrix">
+ <param name="Type">StiffnessMatrix</param>
+ <param name="RowVariable">VelocityField</param>
+ <param name="ColumnVariable">PressureField</param>
+ <param name="RHS">cont_force</param>
+ <param name="allowZeroElementContributions">False</param>
+ </struct>
+ <struct name="gradientStiffnessMatrixTerm">
+ <param name="Type">GradientStiffnessMatrixTerm</param>
+ <param name="Swarm">gaussSwarm</param>
+ <param name="StiffnessMatrix">g_matrix</param>
+ </struct>
+ <struct name="preconditioner">
+ <param name="Type">StiffnessMatrix</param>
+ <param name="RowVariable">PressureField</param>
+ <param name="ColumnVariable">PressureField</param>
+ <param name="RHS">cont_force</param>
+ <param name="allowZeroElementContributions">True</param>
+ </struct>
+ <struct name="preconditionerTerm">
+ <param name="Type">UzawaPreconditionerTerm</param>
+ <param name="Swarm">picIntegrationPoints</param>
+ <param name="StiffnessMatrix">preconditioner</param>
+ </struct>
+ <struct name="uzawa">
+ <param name="Type">Stokes_SLE_UzawaSolver</param>
+ <param name="Preconditioner">preconditioner</param>
+ <param name="tolerance">5.0e-3</param>
+ <param name="maxIterations">1000</param>
+ <param name="useAbsoluteTolerance">False</param>
+ </struct>
+ <struct name="stokesEqn">
+ <param name="Type">Stokes_SLE</param>
+ <param name="SLE_Solver">uzawa</param>
+ <param name="Context">context</param>
+ <param name="StressTensorMatrix">k_matrix</param>
+ <param name="GradientMatrix">g_matrix</param>
+ <param name="DivergenceMatrix"></param>
+ <param name="CompressibilityMatrix">c_matrix</param>
+ <param name="VelocityVector">solutionVelocity</param>
+ <param name="PressureVector">solutionPressure</param>
+ <param name="ForceVector">mom_force</param>
+ <param name="ContinuityForceVector">cont_force</param>
+ <param name="killNonConvergent">false</param>
+ <param name="nonLinearMaxIterations">nonLinearMaxIterations</param>
+ <param name="nonLinearTolerance">nonLinearTolerance</param>
+ <param name="makeConvergenceFile">false</param>
+ </struct>
+ <struct name="c_matrix">
+ <param name="Type">StiffnessMatrix</param>
+ <param name="RowVariable">PressureField</param>
+ <param name="ColumnVariable">PressureField</param>
+ <param name="RHS">cont_force</param>
+ <param name="allowZeroElementContributions">True</param>
+ </struct>
+ <struct name="backgroundShape">
+ <param name="Type">Everywhere</param>
+ </struct>
+ <struct name="incompressibleShape">
+ <param name="Type">Box</param>
+ <param name="startX">minX</param>
+ <param name="endX">maxX</param>
+ <param name="startY">0.8</param>
+ <param name="endY">0.85</param>
+ <param name="startZ">minZ</param>
+ <param name="endZ">maxZ</param>
+ </struct>
+ <struct name="crustShape">
+ <param name="Type">Box</param>
+ <param name="startX">minX</param>
+ <param name="endX">maxX</param>
+ <param name="startY">0.4</param>
+ <param name="endY">0.8</param>
+ <param name="startZ">minZ</param>
+ <param name="endZ">maxZ</param>
+ </struct>
+ <struct name="weakZoneShape1">
+ <param name="Type">Box</param>
+ <param name="startX">0.775</param>
+ <param name="endX">0.825</param>
+ <param name="startY">0.4</param>
+ <param name="endY">0.45</param>
+ <param name="startZ">minZ</param>
+ <param name="endZ">0.66666</param>
+ </struct>
+ <struct name="weakZoneShape2">
+ <param name="Type">Box</param>
+ <param name="startX">1.175</param>
+ <param name="endX">1.225</param>
+ <param name="startY">0.4</param>
+ <param name="endY">0.45</param>
+ <param name="startZ">1.33333</param>
+ <param name="endZ">maxZ</param>
+ </struct>
+ <struct name="weakZoneShape">
+ <param name="Type">Union</param>
+ <list name="shapes">
+ <param>weakZoneShape1</param>
+ <param>weakZoneShape2</param>
+ </list>
+ </struct>
+ <struct name="crustShape2">
+ <param name="Type">Intersection</param>
+ <list name="shapes">
+ <param>crustShape</param>
+ <param>!weakZoneShape</param>
+ </list>
+ </struct>
+ <struct name="mantleShape">
+ <param name="Type">Box</param>
+ <param name="startX">minX</param>
+ <param name="endX">maxX</param>
+ <param name="startY">0.0</param>
+ <param name="endY">0.4</param>
+ <param name="startZ">minZ</param>
+ <param name="endZ">maxZ</param>
+ </struct>
+ <struct name="mantleShape2">
+ <param name="Type">Union</param>
+ <list name="shapes">
+ <param>mantleShape</param>
+ <param>weakZoneShape</param>
+ </list>
+ </struct>
+ <struct name="backgroundViscosity">
+ <param name="Type">MaterialViscosity</param>
+ <param name="eta0">1.0e-1</param>
+ </struct>
+ <struct name="compresibility">
+ <param name="Type">Compressible</param>
+ <param name="GeometryMesh">mesh-linear</param>
+ <param name="StiffnessMatrix">c_matrix</param>
+ <param name="Swarm">picIntegrationPoints</param>
+ <param name="oneOnLambda">10.0</param>
+ </struct>
+ <struct name="background">
+ <param name="Type">RheologyMaterial</param>
+ <param name="Shape">backgroundShape</param>
+ <param name="Compressible">compresibility</param>
+ <param name="Rheology">backgroundViscosity</param>
+ </struct>
+ <struct name="incompressible">
+ <param name="Type">RheologyMaterial</param>
+ <param name="Shape">incompressibleShape</param>
+ <param name="Rheology">backgroundViscosity</param>
+ </struct>
+ <struct name="crustViscosity">
+ <param name="Type">MaterialViscosity</param>
+ <param name="eta0">10.000</param>
+ </struct>
+ <struct name="strainWeakening">
+ <param name="Type">StrainWeakening</param>
+ <param name="TimeIntegrator">timeIntegrator</param>
+ <param name="MaterialPointsSwarm">materialSwarm</param>
+ <param name="softeningStrain">0.1</param>
+ <param name="initialDamageFraction">0.05</param>
+ <param name="initialDamageWavenumber">0.5</param>
+ <param name="initialDamageFactor">1.0</param>
+ <param name="healingRate">0.01</param>
+ </struct>
+ <struct name="yielding">
+ <param name="Type">FaultingMoresiMuhlhaus2006</param>
+ <param name="PressureField">PressureField</param>
+ <param name="VelocityGradientsField">VelocityGradientsField</param>
+ <param name="MaterialPointsSwarm">materialSwarm</param>
+ <param name="Director">director</param>
+ <param name="Context">context</param>
+ <param name="StrainWeakening">strainWeakening</param>
+ <param name="cohesion">15.0</param>
+ <param name="cohesionAfterSoftening">1.0</param>
+ <param name="frictionCoefficient">0.5</param>
+ <param name="frictionCoefficientAfterSoftening">0.01</param>
+ <param name="minimumYieldStress">0.0001</param>
+ <param name="ignoreOldOrientation">false</param>
+ </struct>
+ <struct name="director">
+ <param name="Type">Director</param>
+ <param name="TimeIntegrator">timeIntegrator</param>
+ <param name="VelocityGradientsField">VelocityGradientsField</param>
+ <param name="MaterialPointsSwarm">materialSwarm</param>
+ <param name="initialDirectionX">0.0</param>
+ <param name="initialDirectionY">1.0</param>
+ <param name="initialDirectionZ">0.0</param>
+ <param name="dontUpdate">True</param>
+ </struct>
+ <struct name="crust">
+ <param name="Type">RheologyMaterial</param>
+ <param name="Shape">crustShape2</param>
+ <list name="Rheology">
+ <param>crustViscosity</param>
+ <param>yielding</param>
+ </list>
+ </struct>
+ <struct name="mantleViscosity">
+ <param name="Type">MaterialViscosity</param>
+ <param name="eta0">1.000</param>
+ </struct>
+ <struct name="mantle">
+ <param name="Type">RheologyMaterial</param>
+ <param name="Shape">mantleShape2</param>
+ <param name="Rheology">mantleViscosity</param>
+ </struct>
+ <struct name="MantleField">
+ <param name="Type">MaterialFeVariable</param>
+ <param name="Swarm">picIntegrationPoints</param>
+ <param name="Material">mantle</param>
+ <param name="Context">context</param>
+ <param name="Mesh">mesh-linear</param>
+ </struct>
+ <struct name="CompressibleField">
+ <param name="Type">MaterialFeVariable</param>
+ <param name="Swarm">picIntegrationPoints</param>
+ <param name="Material">background</param>
+ <param name="Context">context</param>
+ <param name="Mesh">mesh-linear</param>
+ </struct>
+ </struct>
+ <param name="maxTimeSteps">20</param>
+ <param name="outputPath">./OutputFiles/ExtensionTimingExampleNoViz</param>
+ <param name="dumpEvery">1</param>
+ <param name="checkpointEvery">5</param>
+ <param name="nonLinearMaxIterations">10</param>
+ <param name="journal.info.Context-verbose">True</param>
+ <param name="journal-level.info.Stg_ComponentFactory">2</param>
+ <param name="journal.debug">t</param>
+ <param name="journal-enable-branch.debug.StgFEM">t</param>
+ <param name="journal-enable-branch.debug.lucDebug">t</param>
+ <param name="journal-level-branch.debug.lucDebug">2</param>
+ <param name="journal-level-branch.debug.StgFEM">2</param>
+ <param name="dim">3</param>
+ <param name="elementResI">64</param>
+ <param name="elementResJ">32</param>
+ <param name="elementResK">32</param>
+ <param name="shadowDepth">1</param>
+ <param name="minX">0.0</param>
+ <param name="minY">0.0</param>
+ <param name="minZ">0.0</param>
+ <param name="maxX">2.0</param>
+ <param name="maxY">1.0</param>
+ <param name="maxZ">1.0</param>
+ <param name="allowUnbalancing">True</param>
+ <param name="particlesPerCell">20</param>
+ <param name="cellParticleCount">20</param>
+ <param name="seed">13</param>
+ <struct name="velocityBCs">
+ <param name="type">CompositeVC</param>
+ <list name="vcList">
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">bottom</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vy</param>
+ <param name="type">double</param>
+ <param name="value">0</param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">left</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vx</param>
+ <param name="type">double</param>
+ <param name="value">-0.5</param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">right</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vx</param>
+ <param name="type">double</param>
+ <param name="value">0.5</param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">front</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vz</param>
+ <param name="type">double</param>
+ <param name="value">0</param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">back</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vz</param>
+ <param name="type">double</param>
+ <param name="value">0</param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">top</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vy</param>
+ <param name="type">double</param>
+ <param name="value">0</param>
+ </struct>
+ </list>
+ </struct>
+ </list>
+ </struct>
+ <param name="nonLinearTolerance">0.033</param>
+ <param name="killNonConvergent">f</param>
+ <param name="outputEvery">1</param>
+ <param name="experimentName">experiment</param>
+</StGermainData>
Added: long/3D/Gale/trunk/src/Underworld/InputFiles/timingExamples/ExtensionNoVisuals_64x64x32.xml
===================================================================
--- long/3D/Gale/trunk/src/Underworld/InputFiles/timingExamples/ExtensionNoVisuals_64x64x32.xml 2007-02-23 18:23:05 UTC (rev 6100)
+++ long/3D/Gale/trunk/src/Underworld/InputFiles/timingExamples/ExtensionNoVisuals_64x64x32.xml 2007-02-23 19:49:10 UTC (rev 6101)
@@ -0,0 +1,586 @@
+<?xml version="1.0"?>
+<StGermainData xmlns="http://www.vpac.org/StGermain/XML_IO_Handler/Jun2003">
+ <list name="plugins">
+ <param>Underworld_MovingMesh</param>
+ <param>StgFEM_StandardConditionFunctions</param>
+ <param>StgFEM_FrequentOutput</param>
+ <param>Underworld_Vrms</param>
+ <param>StgFEM_CPUTime</param>
+ </list>
+ <struct name="components">
+ <struct name="mesh-constant">
+ <param name="Type">FeMesh</param>
+ <param name="elementType">constant</param>
+ </struct>
+ <struct name="constantMesh-generator">
+ <param name="Type">C0Generator</param>
+ <param name="mesh">mesh-constant</param>
+ <param name="elementMesh">mesh-linear</param>
+ </struct>
+ <struct name="mesh-linear">
+ <param name="Type">FeMesh</param>
+ <param name="elementType">linear</param>
+ </struct>
+ <struct name="linearMesh-generator">
+ <param name="Type">CartesianGenerator</param>
+ <param name="mesh">mesh-linear</param>
+ <param name="dims">dim</param>
+ <param name="shadowDepth">shadowDepth</param>
+ <list name="size">
+ <param>elementResI</param>
+ <param>elementResJ</param>
+ <param>elementResK</param>
+ </list>
+ <list name="minCoord">
+ <param>minX</param>
+ <param>minY</param>
+ <param>minZ</param>
+ </list>
+ <list name="maxCoord">
+ <param>maxX</param>
+ <param>maxY</param>
+ <param>maxZ</param>
+ </list>
+ </struct>
+ <struct name="velocity">
+ <param name="Type">MeshVariable</param>
+ <param name="mesh">mesh-linear</param>
+ <param name="Rank">Vector</param>
+ <param name="DataType">Double</param>
+ <param name="VectorComponentCount">dim</param>
+ <list name="names">
+ <param>vx</param>
+ <param>vy</param>
+ <param>vz</param>
+ </list>
+ </struct>
+ <struct name="velocityBCs">
+ <param name="Type">CompositeVC</param>
+ <param name="Data">mesh-linear</param>
+ </struct>
+ <struct name="velocityICs">
+ <param name="Type">CompositeVC</param>
+ <param name="Data">mesh-linear</param>
+ </struct>
+ <struct name="velocityDofLayout">
+ <param name="Type">DofLayout</param>
+ <param name="mesh">mesh-linear</param>
+ <param name="BaseVariableCount">dim</param>
+ <list name="BaseVariables">
+ <param>vx</param>
+ <param>vy</param>
+ <param>vz</param>
+ </list>
+ </struct>
+ <struct name="VelocityField">
+ <param name="Type">FeVariable</param>
+ <param name="FEMesh">mesh-linear</param>
+ <param name="DofLayout">velocityDofLayout</param>
+ <param name="BC">velocityBCs</param>
+ <param name="IC">velocityICs</param>
+ <param name="LinkedDofInfo">velocityLinkedDofs</param>
+ </struct>
+ <struct name="VelocityMagnitudeField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">Magnitude</param>
+ <param name="FeVariable">VelocityField</param>
+ </struct>
+ <struct name="VelocityGradientsField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">Gradient</param>
+ <param name="FeVariable">VelocityField</param>
+ </struct>
+ <struct name="VelocityGradientsInvariantField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TensorInvariant</param>
+ <param name="FeVariable">VelocityGradientsField</param>
+ </struct>
+ <struct name="VelocityXXField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TakeFirstComponent</param>
+ <param name="FeVariable">VelocityField</param>
+ </struct>
+ <struct name="VelocityYYField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TakeSecondComponent</param>
+ <param name="FeVariable">VelocityField</param>
+ </struct>
+ <struct name="StrainRateField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TensorSymmetricPart</param>
+ <param name="FeVariable">VelocityGradientsField</param>
+ </struct>
+ <struct name="VorticityField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TensorAntisymmetricPart</param>
+ <param name="FeVariable">VelocityGradientsField</param>
+ </struct>
+ <struct name="StrainRateInvariantField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">SymmetricTensor_Invariant</param>
+ <param name="FeVariable">StrainRateField</param>
+ </struct>
+ <struct name="StrainRateXXField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TakeFirstComponent</param>
+ <param name="FeVariable">StrainRateField</param>
+ </struct>
+ <struct name="StrainRateYYField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TakeSecondComponent</param>
+ <param name="FeVariable">StrainRateField</param>
+ </struct>
+ <struct name="pressure">
+ <param name="Type">MeshVariable</param>
+ <param name="mesh">mesh-constant</param>
+ <param name="Rank">Scalar</param>
+ <param name="DataType">Double</param>
+ </struct>
+ <struct name="pressureDofLayout">
+ <param name="Type">DofLayout</param>
+ <param name="mesh">mesh-constant</param>
+ <list name="BaseVariables">
+ <param>pressure</param>
+ </list>
+ </struct>
+ <struct name="PressureField">
+ <param name="Type">FeVariable</param>
+ <param name="FEMesh">mesh-constant</param>
+ <param name="DofLayout">pressureDofLayout</param>
+ <param name="LinkedDofInfo">pressureLinkedDofs</param>
+ </struct>
+ <struct name="cellLayout">
+ <param name="Type">SingleCellLayout</param>
+ </struct>
+ <struct name="particleLayout">
+ <param name="Type">GaussParticleLayout</param>
+ </struct>
+ <struct name="gaussSwarm">
+ <param name="Type">IntegrationPointsSwarm</param>
+ <param name="CellLayout">cellLayout</param>
+ <param name="ParticleLayout">particleLayout</param>
+ <param name="FeMesh">mesh-linear</param>
+ <param name="TimeIntegrator">timeIntegrator</param>
+ <param name="IntegrationPointMapper">gaussMapper</param>
+ </struct>
+ <struct name="gaussMapper">
+ <param name="Type">GaussMapper</param>
+ <param name="IntegrationPointsSwarm">gaussSwarm</param>
+ <param name="MaterialPointsSwarm">gaussMaterialSwarm</param>
+ </struct>
+ <struct name="backgroundLayout">
+ <param name="Type">BackgroundParticleLayout</param>
+ </struct>
+ <struct name="gaussMaterialSwarm">
+ <param name="Type">MaterialPointsSwarm</param>
+ <param name="CellLayout">cellLayout</param>
+ <param name="ParticleLayout">backgroundLayout</param>
+ <param name="FeMesh">mesh-linear</param>
+ </struct>
+ <struct name="timeIntegrator">
+ <param name="Type">TimeIntegrator</param>
+ <param name="order">timeIntegratorOrder</param>
+ <param name="simultaneous">f</param>
+ <param name="Context">context</param>
+ </struct>
+ <struct name="elementCellLayout">
+ <param name="Type">ElementCellLayout</param>
+ <param name="Mesh">mesh-linear</param>
+ </struct>
+ <struct name="discreteVoronoi">
+ <param name="Type">CellularAutomataVoronoi</param>
+ <param name="resolution">10</param>
+ <param name="diagonalNeighbours">true</param>
+ </struct>
+ <struct name="weights">
+ <param name="Type">DVCWeights</param>
+ <param name="resolution">10</param>
+ </struct>
+ <struct name="localLayout">
+ <param name="Type">MappedParticleLayout</param>
+ </struct>
+ <struct name="picIntegrationPoints">
+ <param name="Type">IntegrationPointsSwarm</param>
+ <param name="CellLayout">elementCellLayout</param>
+ <param name="ParticleLayout">localLayout</param>
+ <param name="FeMesh">mesh-linear</param>
+ <param name="WeightsCalculator">weights</param>
+ <param name="TimeIntegrator">timeIntegrator</param>
+ <param name="IntegrationPointMapper">mapper</param>
+ </struct>
+ <struct name="mapper">
+ <param name="Type">CoincidentMapper</param>
+ <param name="IntegrationPointsSwarm">picIntegrationPoints</param>
+ <param name="MaterialPointsSwarm">materialSwarm</param>
+ </struct>
+ <struct name="materialSwarmParticleLayout">
+ <param name="Type">SpaceFillerParticleLayout</param>
+ <param name="averageInitialParticlesPerCell">particlesPerCell</param>
+ </struct>
+ <struct name="materialSwarm">
+ <param name="Type">MaterialPointsSwarm</param>
+ <param name="CellLayout">elementCellLayout</param>
+ <param name="ParticleLayout">materialSwarmParticleLayout</param>
+ <param name="FeMesh">mesh-linear</param>
+ <param name="SplittingRoutine">splittingRoutine</param>
+ <param name="RemovalRoutine">removalRoutine</param>
+ <param name="EscapedRoutine">escapedRoutine</param>
+ </struct>
+ <struct name="materialSwarmAdvector">
+ <param name="Type">SwarmAdvector</param>
+ <param name="Swarm">materialSwarm</param>
+ <param name="TimeIntegrator">timeIntegrator</param>
+ <param name="VelocityField">VelocityField</param>
+ <param name="PeriodicBCsManager">periodicBCsManager</param>
+ <param name="allowFallbackToFirstOrder">True</param>
+ </struct>
+ <struct name="solutionVelocity">
+ <param name="Type">SolutionVector</param>
+ <param name="FeVariable">VelocityField</param>
+ </struct>
+ <struct name="solutionPressure">
+ <param name="Type">SolutionVector</param>
+ <param name="FeVariable">PressureField</param>
+ </struct>
+ <struct name="mom_force">
+ <param name="Type">ForceVector</param>
+ <param name="FeVariable">VelocityField</param>
+ <param name="ExtraInfo">context</param>
+ </struct>
+ <struct name="cont_force">
+ <param name="Type">ForceVector</param>
+ <param name="FeVariable">PressureField</param>
+ <param name="ExtraInfo">context</param>
+ </struct>
+ <struct name="k_matrix">
+ <param name="Type">StiffnessMatrix</param>
+ <param name="RowVariable">VelocityField</param>
+ <param name="ColumnVariable">VelocityField</param>
+ <param name="RHS">mom_force</param>
+ <param name="allowZeroElementContributions">False</param>
+ </struct>
+ <struct name="constitutiveMatrix">
+ <param name="Type">ConstitutiveMatrixCartesian</param>
+ <param name="Swarm">picIntegrationPoints</param>
+ <param name="StiffnessMatrix">k_matrix</param>
+ </struct>
+ <struct name="g_matrix">
+ <param name="Type">StiffnessMatrix</param>
+ <param name="RowVariable">VelocityField</param>
+ <param name="ColumnVariable">PressureField</param>
+ <param name="RHS">cont_force</param>
+ <param name="allowZeroElementContributions">False</param>
+ </struct>
+ <struct name="gradientStiffnessMatrixTerm">
+ <param name="Type">GradientStiffnessMatrixTerm</param>
+ <param name="Swarm">gaussSwarm</param>
+ <param name="StiffnessMatrix">g_matrix</param>
+ </struct>
+ <struct name="preconditioner">
+ <param name="Type">StiffnessMatrix</param>
+ <param name="RowVariable">PressureField</param>
+ <param name="ColumnVariable">PressureField</param>
+ <param name="RHS">cont_force</param>
+ <param name="allowZeroElementContributions">True</param>
+ </struct>
+ <struct name="preconditionerTerm">
+ <param name="Type">UzawaPreconditionerTerm</param>
+ <param name="Swarm">picIntegrationPoints</param>
+ <param name="StiffnessMatrix">preconditioner</param>
+ </struct>
+ <struct name="uzawa">
+ <param name="Type">Stokes_SLE_UzawaSolver</param>
+ <param name="Preconditioner">preconditioner</param>
+ <param name="tolerance">5.0e-3</param>
+ <param name="maxIterations">1000</param>
+ <param name="useAbsoluteTolerance">False</param>
+ </struct>
+ <struct name="stokesEqn">
+ <param name="Type">Stokes_SLE</param>
+ <param name="SLE_Solver">uzawa</param>
+ <param name="Context">context</param>
+ <param name="StressTensorMatrix">k_matrix</param>
+ <param name="GradientMatrix">g_matrix</param>
+ <param name="DivergenceMatrix"></param>
+ <param name="CompressibilityMatrix">c_matrix</param>
+ <param name="VelocityVector">solutionVelocity</param>
+ <param name="PressureVector">solutionPressure</param>
+ <param name="ForceVector">mom_force</param>
+ <param name="ContinuityForceVector">cont_force</param>
+ <param name="killNonConvergent">false</param>
+ <param name="nonLinearMaxIterations">nonLinearMaxIterations</param>
+ <param name="nonLinearTolerance">nonLinearTolerance</param>
+ <param name="makeConvergenceFile">false</param>
+ </struct>
+ <struct name="c_matrix">
+ <param name="Type">StiffnessMatrix</param>
+ <param name="RowVariable">PressureField</param>
+ <param name="ColumnVariable">PressureField</param>
+ <param name="RHS">cont_force</param>
+ <param name="allowZeroElementContributions">True</param>
+ </struct>
+ <struct name="backgroundShape">
+ <param name="Type">Everywhere</param>
+ </struct>
+ <struct name="incompressibleShape">
+ <param name="Type">Box</param>
+ <param name="startX">minX</param>
+ <param name="endX">maxX</param>
+ <param name="startY">0.8</param>
+ <param name="endY">0.85</param>
+ <param name="startZ">minZ</param>
+ <param name="endZ">maxZ</param>
+ </struct>
+ <struct name="crustShape">
+ <param name="Type">Box</param>
+ <param name="startX">minX</param>
+ <param name="endX">maxX</param>
+ <param name="startY">0.4</param>
+ <param name="endY">0.8</param>
+ <param name="startZ">minZ</param>
+ <param name="endZ">maxZ</param>
+ </struct>
+ <struct name="weakZoneShape1">
+ <param name="Type">Box</param>
+ <param name="startX">0.775</param>
+ <param name="endX">0.825</param>
+ <param name="startY">0.4</param>
+ <param name="endY">0.45</param>
+ <param name="startZ">minZ</param>
+ <param name="endZ">0.66666</param>
+ </struct>
+ <struct name="weakZoneShape2">
+ <param name="Type">Box</param>
+ <param name="startX">1.175</param>
+ <param name="endX">1.225</param>
+ <param name="startY">0.4</param>
+ <param name="endY">0.45</param>
+ <param name="startZ">1.33333</param>
+ <param name="endZ">maxZ</param>
+ </struct>
+ <struct name="weakZoneShape">
+ <param name="Type">Union</param>
+ <list name="shapes">
+ <param>weakZoneShape1</param>
+ <param>weakZoneShape2</param>
+ </list>
+ </struct>
+ <struct name="crustShape2">
+ <param name="Type">Intersection</param>
+ <list name="shapes">
+ <param>crustShape</param>
+ <param>!weakZoneShape</param>
+ </list>
+ </struct>
+ <struct name="mantleShape">
+ <param name="Type">Box</param>
+ <param name="startX">minX</param>
+ <param name="endX">maxX</param>
+ <param name="startY">0.0</param>
+ <param name="endY">0.4</param>
+ <param name="startZ">minZ</param>
+ <param name="endZ">maxZ</param>
+ </struct>
+ <struct name="mantleShape2">
+ <param name="Type">Union</param>
+ <list name="shapes">
+ <param>mantleShape</param>
+ <param>weakZoneShape</param>
+ </list>
+ </struct>
+ <struct name="backgroundViscosity">
+ <param name="Type">MaterialViscosity</param>
+ <param name="eta0">1.0e-1</param>
+ </struct>
+ <struct name="compresibility">
+ <param name="Type">Compressible</param>
+ <param name="GeometryMesh">mesh-linear</param>
+ <param name="StiffnessMatrix">c_matrix</param>
+ <param name="Swarm">picIntegrationPoints</param>
+ <param name="oneOnLambda">10.0</param>
+ </struct>
+ <struct name="background">
+ <param name="Type">RheologyMaterial</param>
+ <param name="Shape">backgroundShape</param>
+ <param name="Compressible">compresibility</param>
+ <param name="Rheology">backgroundViscosity</param>
+ </struct>
+ <struct name="incompressible">
+ <param name="Type">RheologyMaterial</param>
+ <param name="Shape">incompressibleShape</param>
+ <param name="Rheology">backgroundViscosity</param>
+ </struct>
+ <struct name="crustViscosity">
+ <param name="Type">MaterialViscosity</param>
+ <param name="eta0">10.000</param>
+ </struct>
+ <struct name="strainWeakening">
+ <param name="Type">StrainWeakening</param>
+ <param name="TimeIntegrator">timeIntegrator</param>
+ <param name="MaterialPointsSwarm">materialSwarm</param>
+ <param name="softeningStrain">0.1</param>
+ <param name="initialDamageFraction">0.05</param>
+ <param name="initialDamageWavenumber">0.5</param>
+ <param name="initialDamageFactor">1.0</param>
+ <param name="healingRate">0.01</param>
+ </struct>
+ <struct name="yielding">
+ <param name="Type">FaultingMoresiMuhlhaus2006</param>
+ <param name="PressureField">PressureField</param>
+ <param name="VelocityGradientsField">VelocityGradientsField</param>
+ <param name="MaterialPointsSwarm">materialSwarm</param>
+ <param name="Director">director</param>
+ <param name="Context">context</param>
+ <param name="StrainWeakening">strainWeakening</param>
+ <param name="cohesion">15.0</param>
+ <param name="cohesionAfterSoftening">1.0</param>
+ <param name="frictionCoefficient">0.5</param>
+ <param name="frictionCoefficientAfterSoftening">0.01</param>
+ <param name="minimumYieldStress">0.0001</param>
+ <param name="ignoreOldOrientation">false</param>
+ </struct>
+ <struct name="director">
+ <param name="Type">Director</param>
+ <param name="TimeIntegrator">timeIntegrator</param>
+ <param name="VelocityGradientsField">VelocityGradientsField</param>
+ <param name="MaterialPointsSwarm">materialSwarm</param>
+ <param name="initialDirectionX">0.0</param>
+ <param name="initialDirectionY">1.0</param>
+ <param name="initialDirectionZ">0.0</param>
+ <param name="dontUpdate">True</param>
+ </struct>
+ <struct name="crust">
+ <param name="Type">RheologyMaterial</param>
+ <param name="Shape">crustShape2</param>
+ <list name="Rheology">
+ <param>crustViscosity</param>
+ <param>yielding</param>
+ </list>
+ </struct>
+ <struct name="mantleViscosity">
+ <param name="Type">MaterialViscosity</param>
+ <param name="eta0">1.000</param>
+ </struct>
+ <struct name="mantle">
+ <param name="Type">RheologyMaterial</param>
+ <param name="Shape">mantleShape2</param>
+ <param name="Rheology">mantleViscosity</param>
+ </struct>
+ <struct name="MantleField">
+ <param name="Type">MaterialFeVariable</param>
+ <param name="Swarm">picIntegrationPoints</param>
+ <param name="Material">mantle</param>
+ <param name="Context">context</param>
+ <param name="Mesh">mesh-linear</param>
+ </struct>
+ <struct name="CompressibleField">
+ <param name="Type">MaterialFeVariable</param>
+ <param name="Swarm">picIntegrationPoints</param>
+ <param name="Material">background</param>
+ <param name="Context">context</param>
+ <param name="Mesh">mesh-linear</param>
+ </struct>
+ </struct>
+ <param name="maxTimeSteps">20</param>
+ <param name="outputPath">./OutputFiles/ExtensionTimingExampleNoViz</param>
+ <param name="dumpEvery">1</param>
+ <param name="checkpointEvery">5</param>
+ <param name="nonLinearMaxIterations">10</param>
+ <param name="journal.info.Context-verbose">True</param>
+ <param name="journal-level.info.Stg_ComponentFactory">2</param>
+ <param name="journal.debug">t</param>
+ <param name="journal-enable-branch.debug.StgFEM">t</param>
+ <param name="journal-enable-branch.debug.lucDebug">t</param>
+ <param name="journal-level-branch.debug.lucDebug">2</param>
+ <param name="journal-level-branch.debug.StgFEM">2</param>
+ <param name="dim">3</param>
+ <param name="elementResI">64</param>
+ <param name="elementResJ">64</param>
+ <param name="elementResK">32</param>
+ <param name="shadowDepth">1</param>
+ <param name="minX">0.0</param>
+ <param name="minY">0.0</param>
+ <param name="minZ">0.0</param>
+ <param name="maxX">2.0</param>
+ <param name="maxY">1.0</param>
+ <param name="maxZ">1.0</param>
+ <param name="allowUnbalancing">True</param>
+ <param name="particlesPerCell">20</param>
+ <param name="cellParticleCount">20</param>
+ <param name="seed">13</param>
+ <struct name="velocityBCs">
+ <param name="type">CompositeVC</param>
+ <list name="vcList">
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">bottom</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vy</param>
+ <param name="type">double</param>
+ <param name="value">0</param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">left</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vx</param>
+ <param name="type">double</param>
+ <param name="value">-0.5</param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">right</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vx</param>
+ <param name="type">double</param>
+ <param name="value">0.5</param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">front</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vz</param>
+ <param name="type">double</param>
+ <param name="value">0</param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">back</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vz</param>
+ <param name="type">double</param>
+ <param name="value">0</param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">top</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vy</param>
+ <param name="type">double</param>
+ <param name="value">0</param>
+ </struct>
+ </list>
+ </struct>
+ </list>
+ </struct>
+ <param name="nonLinearTolerance">0.033</param>
+ <param name="killNonConvergent">f</param>
+ <param name="outputEvery">1</param>
+ <param name="experimentName">experiment</param>
+</StGermainData>
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