[cig-commits] r8143 - doc/CitcomS/manual
sue at geodynamics.org
sue at geodynamics.org
Thu Oct 18 11:49:46 PDT 2007
Author: sue
Date: 2007-10-18 11:49:46 -0700 (Thu, 18 Oct 2007)
New Revision: 8143
Modified:
doc/CitcomS/manual/citcoms.lyx
Log:
various fixes and edits
Modified: doc/CitcomS/manual/citcoms.lyx
===================================================================
--- doc/CitcomS/manual/citcoms.lyx 2007-10-18 18:12:58 UTC (rev 8142)
+++ doc/CitcomS/manual/citcoms.lyx 2007-10-18 18:49:46 UTC (rev 8143)
@@ -15260,7 +15260,7 @@
\begin_layout Standard
The grid spacing of the regular grid.
- The regular grid is an auxiliary grid to help locating the tracers.
+ The regular grid is an auxiliary grid to help locate the tracers.
\end_layout
\end_inset
@@ -15365,7 +15365,7 @@
\begin_inset Text
\begin_layout Standard
-The warning level of tracer module.
+The warning level of the tracer module.
\end_layout
\end_inset
@@ -15397,7 +15397,7 @@
on
\family default
\size default
-, specify the internal heating number inside the composition anomaly.
+, specifies the internal heating number inside the composition anomaly.
\end_layout
\end_inset
@@ -15748,11 +15748,11 @@
\begin_inset Text
\begin_layout Standard
-If on, print the
+If on, prints the
\family typewriter
mpirun
\family default
- command line and exit without launching the job.
+ command line and exits without launching the job.
\end_layout
\end_inset
@@ -15863,7 +15863,7 @@
on
\family default
\size default
-, print the batch script and exit without scheduling the job.
+, prints the batch script and exits without scheduling the job.
\end_layout
\end_inset
@@ -15892,7 +15892,7 @@
on
\family default
\size default
-, wait for batch jobs to finish before exiting.
+, waits for batch jobs to finish before exiting.
\end_layout
\end_inset
@@ -15946,7 +15946,7 @@
\begin_inset Text
\begin_layout Standard
-The name for the job.
+The name of the job.
\end_layout
\end_inset
@@ -16112,7 +16112,7 @@
\begin_inset Text
\begin_layout Standard
-The time step interval between disk output.
+The time-step interval between disk output.
It replaces the
\family typewriter
storage_spacing
@@ -16140,7 +16140,7 @@
\begin_inset Text
\begin_layout Standard
-The time step interval between checkpoint output, which can be used later
+The time-step interval between checkpoint output, which can be used later
to resume the computation.
\end_layout
@@ -16251,8 +16251,8 @@
\begin_inset Text
\begin_layout Standard
-A facility for the velocity solver using Boussinesq approximation and Uzawa
- algorithm.
+A facility for the velocity solver using Boussinesq approximation and the
+ Uzawa algorithm.
\end_layout
@@ -18806,7 +18806,9 @@
\family typewriter
\size small
-output_optional="surf,botm,tracer,comp_el"
+output_optional="surf,botm,
+\newline
+tracer,comp_el"
\end_layout
\end_inset
@@ -20964,9 +20966,11 @@
must be input exactly as shown, while
\family typewriter
\series bold
-bold
+\emph on
+italicized
\family default
\series default
+\emph default
words should be substituted by your values.
All parameters are in non-dimensional units unless specified.
@@ -20996,14 +21000,20 @@
\newline
1
\series bold
- theta1
+
+\emph on
+theta1
\series default
+\emph default
\newline
2
\series bold
- theta2
+
+\emph on
+theta2
\series default
+\emph default
\newline
...
@@ -21011,22 +21021,31 @@
\series bold
\newline
+
+\emph on
nodex theta_nodex
\series default
+\emph default
\newline
nsd= 2
\newline
1
\series bold
- phi1
+
+\emph on
+phi1
\series default
+\emph default
\newline
2
\series bold
- phi2
+
+\emph on
+phi2
\series default
+\emph default
\newline
...
@@ -21034,22 +21053,31 @@
\series bold
\newline
+
+\emph on
nodey phi_nodey
\series default
+\emph default
\newline
nsd= 3
\newline
1
\series bold
- r1
+
+\emph on
+r1
\series default
+\emph default
\newline
2
\series bold
- r2
+
+\emph on
+r2
\series default
+\emph default
\newline
...
@@ -21057,12 +21085,14 @@
\series bold
\newline
+
+\emph on
nodez r_nodez
\end_layout
\begin_layout Standard
-For full spherical version of CitcomS.py, the mesh of each cap must be regular
- and equidistant in the horizontal dimension.
+For the full spherical version of CitcomS.py, the mesh of each cap must be
+ regular and equidistant in the horizontal dimension.
Only the vertical dimension is specified by
\family typewriter
coor_file
@@ -21080,14 +21110,20 @@
\newline
1
\series bold
- r1
+
+\emph on
+r1
\series default
+\emph default
\newline
2
\series bold
- r2
+
+\emph on
+r2
\series default
+\emph default
\newline
...
@@ -21095,6 +21131,8 @@
\series bold
\newline
+
+\emph on
nodez r_nodez
\end_layout
@@ -21148,7 +21186,7 @@
Even though the model starts at 83 million years before the present, by
default it will attempt to read in both a file for 84 and a file for 83
million years ago.
- To deal with this, just create a duplicate copy of
+ To deal with this, create a duplicate copy of
\family typewriter
bvel.dat83
\family default
@@ -21217,6 +21255,7 @@
\begin_layout LyX-Code
\series bold
+\emph on
Vx Vy
\end_layout
@@ -21296,6 +21335,7 @@
\begin_layout LyX-Code
\series bold
+\emph on
n viscosity_factor
\end_layout
@@ -21377,6 +21417,7 @@
\begin_layout LyX-Code
\series bold
+\emph on
n age
\end_layout
@@ -21395,6 +21436,7 @@
\begin_layout LyX-Code
\series bold
+\emph on
num_tracers num_columns
\newline
theta phi radius [flavor]
@@ -21434,7 +21476,9 @@
\begin_inset Formula $c_{P}$
\end_inset
- reserved reserved reserved
+
+\emph on
+reserved reserved reserved
\end_layout
\begin_layout Chapter
@@ -21469,8 +21513,8 @@
\family typewriter
autocombine.py
\family default
- produces 1 cap file for regional CitcomS.py and 12 cap files for full CitcomS.py,
- e.g.,
+ produces 1 cap file for regional CitcomS.py and 12 cap files for the full
+ CitcomS.py, e.g.,
\family typewriter
test-case.cap00.10
\family default
@@ -21782,6 +21826,8 @@
status open
\begin_layout Standard
+\noindent
+\align center
\begin_inset Tabular
<lyxtabular version="3" rows="8" columns="2">
<features>
@@ -22765,6 +22811,7 @@
\begin_layout Bibliography
\begin_inset LatexCommand bibitem
+label "3"
key "Moresi/Zhong/Gurnis The accuracy"
\end_inset
@@ -22782,7 +22829,7 @@
\begin_layout Bibliography
\begin_inset LatexCommand bibitem
-label "3"
+label "4"
key "Moresi/Gurnis Contraints"
\end_inset
@@ -22804,7 +22851,7 @@
\begin_layout Bibliography
\begin_inset LatexCommand bibitem
-label "4"
+label "5"
key "Zhong/Moresi The role of faults"
\end_inset
@@ -22827,7 +22874,7 @@
\begin_layout Bibliography
\begin_inset LatexCommand bibitem
-label "5"
+label "6"
key "Zhong et al The role of temperature"
\end_inset
@@ -22847,7 +22894,7 @@
\begin_layout Bibliography
\begin_inset LatexCommand bibitem
-label "6"
+label "7"
key "Tan et al Slabs in the lower"
\end_inset
@@ -22870,7 +22917,7 @@
\begin_layout Bibliography
\begin_inset LatexCommand bibitem
-label "7"
+label "8"
key "Conrad/Gurnis Seismic tomography"
\end_inset
@@ -22892,7 +22939,7 @@
\begin_layout Bibliography
\begin_inset LatexCommand bibitem
-label "8"
+label "9"
key "Hughes The Finite Element Method"
\end_inset
@@ -22909,7 +22956,7 @@
\begin_layout Bibliography
\begin_inset LatexCommand bibitem
-label "9"
+label "10"
key "Ramage/Wathen Iterative solution"
\end_inset
@@ -22933,7 +22980,7 @@
\begin_layout Bibliography
\begin_inset LatexCommand bibitem
-label "10"
+label "11"
key "Brooks A.N."
\end_inset
@@ -22950,7 +22997,7 @@
\begin_layout Bibliography
\begin_inset LatexCommand bibitem
-label "11"
+label "12"
key "Cahouet/Chabard Some fast 3D"
\end_inset
@@ -22974,7 +23021,7 @@
\begin_layout Bibliography
\begin_inset LatexCommand bibitem
-label "12"
+label "13"
key "Atanga/Silvester Iterative methods"
\end_inset
@@ -22998,7 +23045,7 @@
\begin_layout Bibliography
\begin_inset LatexCommand bibitem
-label "13"
+label "14"
key "Hager/OConnell A simple global"
\end_inset
@@ -23020,7 +23067,7 @@
\begin_layout Bibliography
\begin_inset LatexCommand bibitem
-label "14"
+label "15"
key "Tan et al GeoFramework Part I"
\end_inset
@@ -23041,7 +23088,7 @@
\begin_layout Bibliography
\begin_inset LatexCommand bibitem
-label "15"
+label "16"
key "Zhong et al Free-surface formulation"
\end_inset
@@ -23064,7 +23111,7 @@
\begin_layout Bibliography
\begin_inset LatexCommand bibitem
-label "16"
+label "17"
key "Zhong et al Three-dimensional"
\end_inset
@@ -23087,7 +23134,7 @@
\begin_layout Bibliography
\begin_inset LatexCommand bibitem
-label "17"
+label "18"
key "McNamara Zhong Thermochemical"
\end_inset
@@ -23105,7 +23152,7 @@
\begin_layout Bibliography
\begin_inset LatexCommand bibitem
-label "18"
+label "19"
key "Tackely King tracer ratio method"
\end_inset
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