[cig-commits] r7950 - in doc/CitcomS/manual: . graphics

[sue at geodynamics.org]

Author: sue
Date: 2007-09-12 11:29:49 -0700 (Wed, 12 Sep 2007)
New Revision: 7950

Modified:
   doc/CitcomS/manual/citcoms.lyx
   doc/CitcomS/manual/citcoms.pdf
   doc/CitcomS/manual/graphics/citcoms_cover-layers.pdf
   doc/CitcomS/manual/graphics/citcoms_cover.pdf
Log:
minor edits, cover updated

Modified: doc/CitcomS/manual/citcoms.lyx
===================================================================
--- doc/CitcomS/manual/citcoms.lyx	2007-09-12 18:14:36 UTC (rev 7949)
+++ doc/CitcomS/manual/citcoms.lyx	2007-09-12 18:29:49 UTC (rev 7950)
@@ -1,4 +1,4 @@
-#LyX 1.4.2 created this file. For more info see http://www.lyx.org/
+#LyX 1.4.3 created this file. For more info see http://www.lyx.org/
 \lyxformat 245
 \begin_document
 \begin_header
@@ -576,7 +576,7 @@
 \end_layout
 
 \begin_layout Standard
-The fourth major release of CitComS (2.2) incorporates the ability of tracing
+The fourth major release of CitComS (2.2) incorporated the ability of tracing
  particles in the flow.
  The tracer code was developed by Allen McNamara and Shijie Zhong in 2004
  and donated to CIG in early 2007.
@@ -587,12 +587,13 @@
 \end_layout
 
 \begin_layout Standard
-This release of CitComS (3.0) contains several new features: 1) two implementatio
-ns of compressible convection, one by Wei Leng and Shijie Zhong and the
- other by Eh Tan; 2) the ability to resume computation from previous checkpoints
-; 3) multi-component chemical convection; 4) compressed ASCII output by
- Thorsten Becker; 5) reading in initial temperature and tracer location
- from GRD files by Thorsten Becker; 6) exchanger package for solver coupling.
+This release of CitComS (3.0) contains several new features: (1) two implementati
+ons of compressible convection, one by Wei Leng and Shijie Zhong and the
+ other by Eh Tan; (2) the ability to resume computation from previous checkpoint
+s; (3) multi-component chemical convection; (4) compressed ASCII output
+ by Thorsten Becker; (5) reading in initial temperature and tracer location
+ from GRD files by Thorsten Becker; and (6) an exchanger package for solver
+ coupling.
 \end_layout
 
 \begin_layout Section
@@ -764,7 +765,7 @@
 
 \end_inset
 
-h 
+
 \end_layout
 
 \begin_layout Standard
@@ -907,7 +908,7 @@
 \begin_inset Formula $\delta\rho_{ph}$
 \end_inset
 
- is the density jump across a phase change, and 
+ is the density jump across a phase change, 
 \begin_inset Formula $\delta\rho_{ch}$
 \end_inset
 
@@ -924,7 +925,7 @@
 C
 \emph default
  is the composition.
- The phase functin is defined as:
+ The phase function is defined as:
 \end_layout
 
 \begin_layout Standard
@@ -934,7 +935,7 @@
 
 \end_inset
 
- (TODO: Sue, can you fix the eqn #?)
+
 \end_layout
 
 \begin_layout Standard
@@ -1182,13 +1183,13 @@
  functions and one constant pressure node for each element.
  The use of brick elements in 3D (or rectangular elements in 2D) is important
  for accurately determining the pressure, such as dynamic topography, in
- incompressible Stokes' flow 
+ incompressible Stokes flow 
 \begin_inset LatexCommand \cite{Hughes The Finite Element Method}
 
 \end_inset
 
 .
- The discrete form of equations 
+ The discrete form of Equations 
 \begin_inset LatexCommand \ref{eq:12}
 
 \end_inset
@@ -1335,8 +1336,8 @@
 \end_layout
 
 \begin_layout Standard
-In the incompressible case, there are two different stratgies to solve equation
- 
+In the incompressible case, there are two different strategies to solve
+ Equation 
 \begin_inset LatexCommand \ref{eq:19}
 
 \end_inset
@@ -1347,14 +1348,14 @@
 \end_inset
 
 .
- The first strategy is to add another iteration when solving equation 
+ The first strategy is to add another iteration when solving Equation 
 \begin_inset LatexCommand \ref{eq:21}
 
 \end_inset
 
 .
- The right-hand-side vector is updated by the velocity solution of previous
- iteraion.
+ The right-hand-side vector is updated by the velocity solution of the previous
+ iteration.
 \end_layout
 
 \begin_layout Standard
@@ -1370,7 +1371,7 @@
 \noindent
 This equation can be solved using the same conjugate gradient scheme as
  the incompressible case.
- The second startegy is to transfrom equation 
+ The second strategy is to transform Equation 
 \begin_inset LatexCommand \ref{eq:20}
 
 \end_inset
@@ -1379,7 +1380,7 @@
 \begin_inset Formula $\mathrm{\left(\mathbf{B}^{\mathit{T}}+\mathbf{C}\right)\mathit{\mathbf{A}^{\mathbf{\mathit{-1}}}}}$
 \end_inset
 
- and using equation 
+ and using Equation 
 \begin_inset LatexCommand \ref{eq:19}
 
 \end_inset
@@ -1390,7 +1391,7 @@
 
 \end_inset
 
-This equation is solved using a bi-conjugate gradient stablized scheme.
+This equation is solved using a bi-conjugate gradient stabilized scheme.
 \end_layout
 
 \begin_layout Section
@@ -1401,7 +1402,7 @@
 There are two forms of meshes and geometries for CitComS.
  By default CitComS will produce a mesh within a regional geometry that
  is bound by lines of constant latitude and longitude.
- There is an option to general a global mesh of a spherical shell.
+ There is an option to generate a global mesh of a spherical shell.
 \end_layout
 
 \begin_layout Standard
@@ -1533,12 +1534,16 @@
 \end_layout
 
 \begin_layout Standard
+\noindent
+\align center
 \begin_inset Float figure
 wide false
 sideways false
-status open
+status collapsed
 
 \begin_layout Standard
+\noindent
+\align center
 \begin_inset Graphics
 	filename graphics/cap_order.eps
 
@@ -1590,7 +1595,7 @@
 placement H
 wide false
 sideways false
-status open
+status collapsed
 
 \begin_layout Standard
 \noindent
@@ -2153,7 +2158,7 @@
 \family typewriter
 configure
 \family default
-, see section 
+, see Section 
 \begin_inset LatexCommand \ref{sec:Configuration}
 
 \end_inset
@@ -2423,7 +2428,7 @@
 \family typewriter
 .egg
 \family default
- packages, in addition to Pythia and store them under 
+ packages, in addition to Pythia, and store them under 
 \family typewriter
 \shape italic
 \emph on
@@ -4858,7 +4863,7 @@
 \end_inset
 
 ).
- Since v2.1 release, CitComS.py solves this problem when running the software
+ Since the v2.1 release, CitComS.py solves this problem when running the software
  on computers that have parallel file systems by assembling a binary HDF5
  file in parallel I/O mode.
  
@@ -7248,8 +7253,8 @@
 \begin_layout Standard
 The script will ask you a few questions on how to specify the great circle
  path.
- There are three options: 1) a starting point and an azimuth, 2) a starting
- point and another point on the great circle, and 3) a starting point and
+ There are three options: (1) a starting point and an azimuth, (2) a starting
+ point and another point on the great circle, and (3) a starting point and
  a rotation pole.
  The great circle path is used to construct the radial cross section.
 \end_layout
@@ -18978,8 +18983,8 @@
  In the second line, the first field is the current bulk sum of composition
  1.
  The second field is the initial bulk sum of composition 1.
- The third and fourth fields (if exist) are the current and initial bulk
- sum of composition 2, etc.
+ The third and fourth fields (if they exist) are the current and initial
+ bulk sum of composition 2, etc.
  ....
  The rest of the file is column-based, where the meaning of the columns
  is:
@@ -19934,12 +19939,11 @@
 155
 \emph default
 , 679-695.
- 
 \end_layout
 
 \begin_layout Bibliography
 
-\bibitem {McNamara Zhong Thermochemical}
+\bibitem [17]{McNamara Zhong Thermochemical}
 McNamara, A.K., and S.
  Zhong (2004), Thermochemical structures within a spherical mantle: Superplumes
  or Piles?
@@ -19949,12 +19953,11 @@
  Res.
 \emph default
 , 109, B07402, doi:10.1029/2003JB002847.
- 
 \end_layout
 
 \begin_layout Bibliography
 
-\bibitem {Tackely King tracer ratio method}
+\bibitem [18]{Tackely King tracer ratio method}
 Tackley, P.J., and S.D.
  King (2003), Testing the tracer ratio method for modeling active compositional
  fields in mantle convection simulations, 

Modified: doc/CitcomS/manual/citcoms.pdf
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Modified: doc/CitcomS/manual/graphics/citcoms_cover-layers.pdf
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Modified: doc/CitcomS/manual/graphics/citcoms_cover.pdf
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