[cig-commits] r12393 - seismo/3D/ADJOINT_TOMO/flexwin/latex

alessia at geodynamics.org alessia at geodynamics.org
Tue Jul 8 04:34:27 PDT 2008


Author: alessia
Date: 2008-07-08 04:34:27 -0700 (Tue, 08 Jul 2008)
New Revision: 12393

Removed:
   seismo/3D/ADJOINT_TOMO/flexwin/latex/README
   seismo/3D/ADJOINT_TOMO/flexwin/latex/REFERENCES.bib
Modified:
   seismo/3D/ADJOINT_TOMO/flexwin/latex/flexwin_manual.pdf
   seismo/3D/ADJOINT_TOMO/flexwin/latex/flexwin_manual.tex
   seismo/3D/ADJOINT_TOMO/flexwin/latex/manual_introduction.tex
   seismo/3D/ADJOINT_TOMO/flexwin/latex/manual_other.tex
   seismo/3D/ADJOINT_TOMO/flexwin/latex/manual_technical.tex
Log:
updated manual for beta test release

Deleted: seismo/3D/ADJOINT_TOMO/flexwin/latex/README
===================================================================
--- seismo/3D/ADJOINT_TOMO/flexwin/latex/README	2008-07-08 09:57:07 UTC (rev 12392)
+++ seismo/3D/ADJOINT_TOMO/flexwin/latex/README	2008-07-08 11:34:27 UTC (rev 12393)
@@ -1,68 +0,0 @@
--------------
-Alessia, 16-March-2008
-
-TODOs:
-
-* Alessia: 
-    + write concluding paragraph to introduction
-    + add envelopes to Figure 1 
-    + write concluding paragraph to discussion
-    
-* Min+Carl:
-    + please add your time-dependent functions to appendix A
-    + what would you like to see in the discussion section?
-
-* Carl:
-    + please check the results section to make sure I have not changed your meaning too much with my edits and re-arrangement of figures
-    
-    
-------------
-
-
-Alessia Maggi, 24-march-2008
-
-TODOs:
-
-* Alessia: 
-    + finish introduction with description of what is to follow
-    + add envelopes to Figure 1 
-    + finsih first draft of discussion
-    + write abstract
-    
-* Min+Carl:
-    + please check the results section to make sure I have not changed your meaning too much with my edits and re-arrangement of figures
-    + please add your time-dependent functions to appendix A
-    + what would you like to see in the discussion section?
-
-* Min:
-    + you seem to be missing the start of the P-wave on the long-period records.  Could you lower the w_E earlier for this period range? 
-    + I have combined three of your figures into one (Figure 15) by some rather ugly pdf hacks.  Could you please make a decent version of something like this figure?
-
-    
-    
-
--------------------
-
-Carl Tape, 07-March-2008
-
-This file: /automeasure/latex/figures/socal/README
-
-To compile from Caltech, use pdflatex.
-
-Convert eps figures to pdf using epstopdf.
-
-------------------------------
-07-March-2008
-
-I have finally added my figures and text, but I have not made substantial changes to other sections.  The bulleted numbered lists follow the format of GJI, although I am not a big fan of them.  I bulleted a few sets of notes, which will eventually turn into text.
-
-Min, I think the next step is for you to add your figures and text to the paper, and also the parts of the tables left for you.  If you choose to use Adobe Illustrator, then you can see my AI EPS files here, if you want to use them as templates:
-
-/net/denali/scratch1/carltape/svn/cig/seismo/3D/automeasure_work/latex/figures/socal/
-
-These were made on a Mac using CS3.  The outlines guaranteed that related figures were exactly the same size, but we can get rid of the lines in the end if we want to.
-
-Alessia, it sounds like Min can get her edits committed within one week, hopefully sooner.  Then perhaps you can take another run-though at the text, then we can quickly, and then we can send it to Jeroen.
-
-I think it is going to be a great paper.  I think if we all focus our efforts now, we can submit it within a couple weeks.
-------------------------------

Deleted: seismo/3D/ADJOINT_TOMO/flexwin/latex/REFERENCES.bib
===================================================================
--- seismo/3D/ADJOINT_TOMO/flexwin/latex/REFERENCES.bib	2008-07-08 09:57:07 UTC (rev 12392)
+++ seismo/3D/ADJOINT_TOMO/flexwin/latex/REFERENCES.bib	2008-07-08 11:34:27 UTC (rev 12393)
@@ -1,4830 +0,0 @@
-%
-%--------------------------------------------------
-%
-%   Carl Tape, 30-May-2005
-%   Geophysics related references
-%   REFERENCES.bib
-%
-%      statistics
-%      Japan
-%      plate models and plate tectonics
-%      OMS
-%      SoCal studies
-%      time-reversed acoustics
-%      adjoint methods and optimization methods
-%      GPS proposition
-%      helioseismology
-%      physics of earthquakes
-%      seismology papers (Woodhouse)
-%      books
-%      spherical-hexagonal grids (Oxford thesis)
-%
-%--------------------------------------------------
-%
-
- at PREAMBLE{
-      "\def \agu{Am.~Geophys.~Un.} "
-    # "\def \acha{Applied Comput. Harmonic Anal.} "
-    # "\def \amsci{Am.~Sci.} "
-    # "\def \angeo{Annals.~Geophy.} "
-    # "\def \areps{Annu.~Rev. Earth Planet.~Sci.} "
-    # "\def \aa{Astron.~Astophys.} "
-    # "\def \ag{Astron.~Geophys.} "
-    # "\def \aj{Astrophys.~J.} "
-    # "\def \araa{Annu.~Rev. Astron.~Astrophys.} "
-    # "\def \bssa{Bull.~Seismol.~Soc.~Am.} "
-    # "\def \beri{Bull.~Earthq. Re.~Inst.} "
-    # "\def \cse{Comp.~Sci.~Eng.} "
-    # "\def \dao{Dynamics~Atmos.~Oceans} "
-    # "\def \eps{Earth~Planets~Space} "
-    # "\def \esr{Earth-Sci.~Rev.} "
-    # "\def \epsl{Earth~Planet. Sci.~Lett.} "
-    # "\def \eos{EOS~Trans. Am.~Geophys.~Union} "
-    # "\def \geol{Geology} "
-    # "\def \gsab{Geol.~Soc.~Am.~Bull.} "
-    # "\def \geop{Geophysics} "
-    # "\def \ggg{Geochem.~Geophy.~Geosyst.} "
-    # "\def \gji{Geophys.~J.~Int.} "
-    # "\def \grl{Geophys.~Res.~Lett.} "
-    # "\def \gjras{Geophys.~J. R.~Astron.~Soc.} "
-    # "\def \gml{Geo-Marine~Lett.} "
-    # "\def \gms{Geophys.~Monogr.~Series} "
-    # "\def \gp{Geophys.~Prosp.} "
-    # "\def \ia{Island~Arc} "
-    # "\def \ieee{IEEE~Trans.~Vis.~Comp.~Graphics} "
-    # "\def \igr{International Geology Review} "
-    # "\def \jaes{J.~Asian Earth~Sci.} "
-    # "\def \jasa{J.~Acoust.~Soc.~Am.} "
-    # "\def \jcp{J.~Comp.~Phys.} "
-    # "\def \jgr{J.~Geophys.~Res.} "
-    # "\def \jg{J.~Geodynam.} "
-    # "\def \jgeop{J.~Geophys.} "
-    # "\def \jmp{J.~Math.~Phys.} "
-    # "\def \jota{J.~Optim. Th.~App.} "
-    # "\def \jrssb{J.~R.~Statist.~Soc.~B} "
-    # "\def \mg{Marine~Geology} "
-    # "\def \mi{Math.~Intelligencer} "
-    # "\def \mnras{Mon.~Not. R.~Astron.~Soc.} "
-    # "\def \mwr{Monthly Weather Review} "
-    # "\def \nat{Nature} "
-    # "\def \nathaz{Natural~Hazards} "
-    # "\def \nzjgg{New.~Zealand J.~Geol.~Geophys.} "
-    # "\def \numa{Num.~Algor.} "
-    # "\def \pt{Phys.~Today} "
-    # "\def \pepi{Phys.~Earth Planet.~Inter.} "
-    # "\def \ptrsl{Phil.~Trans. R.~Soc.~Lond.} "
-    # "\def \ptrsA{Phil.~Trans. R.~Soc.~A.} "
-    # "\def \pag{Pure~App.~Geophys.} "
-    # "\def \qjrms{Q.~J.~R.~Meteorol.~Soc.} "
-    # "\def \rpp{Rep.~Prog.~Phys.} "
-    # "\def \rgsp{Rev.~Geophys.~Space.~Phys.} "
-    # "\def \rgp{Rev.~Geophys.} "
-    # "\def \rmp{Rev.~Mod.~Phys.} "
-    # "\def \sa{Sci.~Am.} "
-    # "\def \sci{Science} "
-    # "\def \scipro{Science~Progress} "
-    # "\def \srl{Seis.~Res.~Lett.} "
-    # "\def \sp{Sol.~Phys.} "
-    # "\def \sirev{SIAM~Rev.} "
-    # "\def \sjna{SIAM~J.~Num.~Anal.} "
-    # "\def \sjsc{SIAM~J.~Sci.~Comp.} "
-    # "\def \tec{Tectonics} "
-    # "\def \tecphy{Tectonophysics} "
-}
-
-
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% Statistics
-
- at article{,
-     AUTHOR = {},
-     JOURNAL = {},
-     PAGES = {},
-     TITLE = {{}},
-     VOLUME = {},
-     NUMBER = {},
-     YEAR = {}
-}
-
-
- at article{Akaike70,
-     AUTHOR = {H. Akaike},
-     TITLE = {{Statistical predictor identification}},
-     JOURNAL = {Ann.~Inst. Statist.~Math.},
-     PAGES = {203--217},
-     VOLUME = {22},
-     YEAR = {1970}
-}
-
-% ACM118 paper
- at article{galapagos,
-     AUTHOR = {M. P. Johnson and P. H. Raven},
-     TITLE = {{Species number and endemism: The Gal\'apagos Archipelago revisited}},
-     JOURNAL = {\sci},
-     PAGES = {893--896},
-     VOLUME = {179},
-     YEAR = {1973}
-}
-
- at book{Hansen98,
-     TITLE = {Pank-Deficient and Discrete Ill-Posed Problems},
-     AUTHOR = {P. C. Hansen},
-     PUBLISHER = {SIAM},
-     ADDRESS = {Philadelphia, Penn.},
-     YEAR = {1998}
-}
-
- at article{Cook77,
-     AUTHOR = {R. D. Cook},
-     TITLE = {{Detection of influential observations in linear regression}},
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-     PAGES = {15--18},
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-}
-
- at article{Golub79,
-     AUTHOR = {G. H. Golub and M. Heath and G. Wahba},
-     TITLE = {{Generalized cross-validation as a method for choosing a good ridge parameter}},
-     JOURNAL = {Technometrics},
-     PAGES = {215--223},
-     VOLUME = {21},
-     YEAR = {1979}
-}
-
- at book{Golub,
-     TITLE = {Matrix computations},
-     AUTHOR = {G. H. Golub and C. F. {{Van Loan}}},
-     PUBLISHER = {Johns Hopkins U.~Press},
-     ADDRESS = {Baltimore, U.S.A.},
-     EDITION = {2},
-     YEAR = {1989}
-}
-
-
- at article{Schneider01,
-     AUTHOR = {T. Schneider},
-     TITLE = {{Analysis of incomplete climate data: Estimation of mean values and covariance matrices and imputation of missing values}},
-     JOURNAL = {J.~Climate},
-     PAGES = {853--971},
-     VOLUME = {14},
-     YEAR = {2001}
-}
-
- at book{Sakamoto,
-     TITLE = {Akaike Information Criterion Statistics},
-     AUTHOR = {Y. Sakamoto and M. Ishiguro and G. Kitagawa},
-     ADDRESS = {Dordrecht, The~Netherlands},
-     PUBLISHER = {Reidel},
-     YEAR = {1987}
-}
-
- at article{Shao93,
-     AUTHOR = {J. Shao},
-     TITLE = {{Linear model selection by cross-validation}},
-     JOURNAL = {J.~Am.~Stat.~Assoc.},
-     PAGES = {486--494},
-     VOLUME = {88},
-     YEAR = {1993}
-}
-
- at article{Shao97,
-     AUTHOR = {J. Shao},
-     TITLE = {{An asymptotic theory for linear model selection}},
-     JOURNAL = {Statist.~Sinica},
-     PAGES = {221--242},
-     VOLUME = {7},
-     YEAR = {1997}
-}
-
-
- at book{Wahba90,
-     TITLE = {Spline Models for Observational Data},
-     AUTHOR = {G. Wahba},
-     PUBLISHER = {SIAM},
-     ADDRESS = {Philadelphia, Penn.},
-     YEAR = {1990}
-}
-
-
-% ACM118 text
- at book{Weisberg,
-     TITLE = {Applied Linear Regression},
-     AUTHOR = {S. Weisberg},
-     ADDRESS = {Hoboken, New~Jersey},
-     PUBLISHER = {Wiley},
-     EDITION = {5},
-     YEAR = {2005}
-}
-
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% Japan
-
- at article{Zhao92,
-     AUTHOR = {D. Zhao and S. Horiuchi and A. Hasegawa},
-     TITLE = {{Seismic velocity structure of the crust beneath the Japan Islands}},
-     JOURNAL = {\tecphy},
-     PAGES = {289--301},
-     VOLUME = {212},
-     YEAR = {1992}
-}
-
- at article{Zhao94,
-     AUTHOR = {D. Zhao and A. Hasegawa and H. Kanamori},
-     TITLE = {{Deep structure of Japan subduction zone as derived from local, regional, and teleseismic events}},
-     JOURNAL = {\jgr},
-     PAGES = {22,313--22,329},
-     VOLUME = {99},
-     NUMBER = {B11},
-     YEAR = {1994},
-     note={doi:10.1029/2000JB000073}
-}
-
- at article{LebedevNolet03,
-     AUTHOR = {S. Lebedev and G. Nolet},
-     TITLE = {{Upper mantle beneath Southeast Asia from S velocity tomography}},
-     JOURNAL = {\jgr},
-     VOLUME = {108},
-     YEAR = {2003},
-}
-
- at article{Chen07,
-     AUTHOR = {M. Chen and J. Tromp and D. Helmberger and H. Kanamori},
-     TITLE = {{Waveform modeling of the slab beneath Japan}},
-     JOURNAL = {\jgr},
-     VOLUME = {112},
-     YEAR = 2007,
-     note={doi:10.1029/2006JB004394}}
-
- at article{SmithSandwell97,
-     AUTHOR = {W. H. F. Smith and D. T. Sandwell},
-     TITLE = {{Global seafloor topography from satellite altimetry and ship depth soundings}},
-     JOURNAL = {\sci},
-     PAGES = {1957--1962},
-     VOLUME = {277},
-     YEAR = {1997}
-}
-
- at misc{Jennings94,
-     AUTHOR = {C. W. Jennings},  
-     TITLE = {{Fault activity map of California and adjacent areas, with locations and ages of recent volcanic eruptions}}, 
-     HOWPUBLISHED = {Calif.~Div. Mines~and~Geology},  
-     NOTE = {{Geologic Data Map No. 6, map scale 1:750,000}},
-     YEAR = {1994}
-}
-
- at misc{sedthick_Divins,
-     AUTHOR = {D. L. Divins},  
-     TITLE = {{NGDC Total Sediment Thickness of the World's Oceans $\&$ Marginal Seas}},  
-     NOTE = {{http://www.ngdc.noaa.gov/mgg/sedthick/sedthick.html}},
-}
-
- at inproceedings{sedthick_Laske,
-     AUTHOR = {G. Laske and G. Masters},
-     TITLE = {{A Global Digital Map of Sediment Thickness}},
-     BOOKTITLE = {\eos},
-     VOLUME = {78},
-     NOTE = {{F483}},
-     YEAR = {1997}
-}
-
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% PLATE MODELS (AND PLATE TECTONICS)
-
- at article{MorganMorgan07,
-     AUTHOR = {W. J. Morgan and J. P. Morgan},
-     TITLE = {{Plate velocities in the hotspot reference frame}},
-     JOURNAL = {xxx},
-     PAGES = {xxx},
-     VOLUME = {xxx},
-     YEAR = {2007}
-}
-
- at article{GordonStein90,
-     AUTHOR = {R. G. Gordon and S. Stein},
-     TITLE = {{Global tectonics and space geodesy}},
-     JOURNAL = {\sci},
-     PAGES = {333--342},
-     VOLUME = {256},
-     YEAR = {1990}
-}
-
- at article{Oneill05,
-     TITLE = {{On the uncertainties in hot spot reconstructions and the significance of moving hot spot reference frames}},  
-     AUTHOR = {C. O'Neill and D. M\"{u}ller and B. Steinberger}, 
-     JOURNAL = {\ggg},
-     VOLUME = {6}, 
-     PAGES = {1--35},
-     NOTE = {{Q04003, doi:10.1029/2004GC000784}},
-     YEAR = {2005}
-}
-
- at article{Bird03,
-     TITLE = {{An updated digital model of plate boundaries}},  
-     AUTHOR = {P. Bird}, 
-     JOURNAL = {\ggg},
-     VOLUME = {4}, 
-     PAGES = {1--52},
-     NOTE = {{1027, doi:10.1029/2001GC000252}},
-     YEAR = {2003}
-}
-
- at article{Kreemer00,
-     AUTHOR = {C. Kreemer and J. Haines and W. E. Holt and G. Blewitt and D. Lavallee},
-     TITLE = {{On the determination of a global strain rate model}},
-     JOURNAL = {\eps},
-     PAGES = {765--770},
-     VOLUME = {52},
-     YEAR = {2000}
-}
-
- at article{Kreemer03,
-     AUTHOR = {C. Kreemer and W. E. Holt and A. J. Haines},
-     TITLE = {{An integrated global model of present-day plate motions and plate boundary deformation}},
-     JOURNAL = {\gji},
-     PAGES = {8--34},
-     VOLUME = {154},
-     YEAR = {2003}
-}
-
- at article{REVEL,
-     TITLE = {{REVEL: A model for Recent plate velocities from space geodesy}},  
-     AUTHOR = {G. F. Sella and T. H. Dixon and A. Mao}, 
-     JOURNAL = {\jgr},
-     VOLUME = {107},
-     NUMBER = {B4}, 
-     NOTE = {{2081, 10.1029/2000JB000033}},
-     YEAR = {2002}
-}
-
- at article{NUVEL1,
-     AUTHOR = {C. DeMets and R. G. Gordon and D. F. Argus and S. Stein},
-     TITLE = {{Current plate motions}},
-     JOURNAL = {\gji},
-     PAGES = {425--478},
-     VOLUME = {101},
-     YEAR = {1990}
-}
-
- at article{NNR-NUVEL1,
-     AUTHOR = {D. F. Argus and R. G. Gordon},
-     TITLE = {{No-net-rotation model of current plate velocities incorporating plate motion model, NUVEL-1}},
-     JOURNAL = {\grl},
-     PAGES = {2039--2042},
-     VOLUME = {18},
-     YEAR = {1991}
-}
-
- at article{NUVEL1A,
-     AUTHOR = {C. DeMets and R. G. Gordon and D. F. Argus and S. Stein},
-     TITLE = {{Effect of recent revisions to the geomagnetic reversal time scale on estimates of current plate motions}},
-     JOURNAL = {\grl},
-     PAGES = {2191--2194},
-     VOLUME = {21},
-     YEAR = {1994}
-}
-
- at article{NNR-NUVEL1B,
-     AUTHOR = {S. Jin and W. Zhu},
-     TITLE = {{A revision of the parameters of the NNR-NUVEL-1A plate velocity model}},
-     JOURNAL = {\jg},
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-     VOLUME = {38},
-     YEAR = {2004}
-}
-
- at article{HS2-NUVEL1A,
-     AUTHOR = {A. E. Gripp and R. G. Gordon},
-     TITLE = {{Current plate velocities relative to the hotspots incorporating the NUVEL-1 global plate motion model}},
-     JOURNAL = {\grl},
-     PAGES = {1109--1112},
-     VOLUME = {17},
-     YEAR = {1990}
-}
-
- at article{HS3-NUVEL1A,
-     AUTHOR = {A. E. Gripp and R. G. Gordon},
-     TITLE = {{Young tracks of hotspots and current plate velocities}},
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-     VOLUME = {150},
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-}
-
- at book{CoxHart,
-     AUTHOR = {A. Cox and R. B. Hart},
-     TITLE = {Plate Tectonics: How It Works},
-     PUBLISHER = {Blackwell},
-     ADDRESS = {Palo Alto, Calif.},
-     YEAR = {1986}
-}
-
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% OMS PAPERS
-
- at article{LH50,
-     AUTHOR = {M. S. Longuet-Higgins},
-     TITLE = {{A theory of the origin of microseisms}},
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-     VOLUME = {243},
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-}
-
- at article{LH51,
-     AUTHOR = {R. I. B. Cooper and M. S. Longuet-Higgins},
-     TITLE = {{An experimental study of the pressure variations in standing water waves}},
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-}
-
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-     AUTHOR = {M. S. Longuet-Higgins},
-     TITLE = {{Can sea waves cause microseisms?}},
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-     PUBLISHER = {U.S. Nat. Acad. Sci. Pub.},
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-}
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- at misc{Kedar03,
-     TITLE = {{The use of ocean microseisms for time-dependent crustal stress monitoring}},
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-     TITLE = {{Upper mantle $S$ velocity structure of North America}},
-     VOLUME = {102},
-     NUMBER = {B10},
-     YEAR = {1997}
-}
-
- at article{Vidale86,
-     AUTHOR = {J. E. Vidale},
-     TITLE = {{Complex polarization analysis of particle motion}},
-     JOURNAL = {\bssa},
-     VOLUME = {76},
-     PAGES = {1393--1405},
-     YEAR = {1986}
-}
-
-
- at article{WaldHeaton94,
-     AUTHOR = {D. J. Wald and T. H. Heaton},
-     JOURNAL = {\bssa},
-     PAGES = {668--691},
-     TITLE = {{Spatial and temporal distribution of slip for the 1992 Landers, California, earthquake}},
-     VOLUME = {84},
-     YEAR = {1994}
-}
-
-
- at article{Wang93,
-     AUTHOR = {Z. Wang and F. A. Dahlen and J. Tromp},
-     JOURNAL = {\gji},
-     PAGES = {311--324},
-     TITLE = {{Surface wave caustics}},
-     VOLUME = {114},
-     YEAR = {1993}
-}
-
-
- at article{Wang94,
-     AUTHOR = {Z. Wang and F. A. Dahlen},
-     JOURNAL = {\gji},
-     PAGES = {381--401},
-     TITLE = {{JKWB surface-wave seismograms on a laterally heterogeneous earth}},
-     VOLUME = {119},
-     YEAR = {1994}
-}
-
- at article{Wang95,
-     AUTHOR = {Z. Wang and F. A. Dahlen},
-     JOURNAL = {\grl},
-     PAGES = {3099--3102},
-     TITLE = {{Spherical-spline parameterization of three-dimensional Earth}},
-     VOLUME = {22},
-     YEAR = {1995}
-}
-
- at article{WangDahlen95,
-     AUTHOR = {Z. Wang and F. A. Dahlen},
-     JOURNAL = {\gji},
-     PAGES = {757--773},
-     TITLE = {{Validity of surface-wave ray theory on a laterally heterogeneous Earth}},
-     VOLUME = {123},
-     YEAR = {1995}
-}
-
-
- at article{Wang98,
-     AUTHOR = {Z. Wang and J. Tromp and G. Ekstr\"{o}m},
-     JOURNAL = {\grl},
-     PAGES = {207--210},
-     TITLE = {{Global and regional surface-wave inversion: A spherical-spline parameterization}},
-     VOLUME = {25},
-     YEAR = {1998}
-}
-
- at article{Widmer92,
-     AUTHOR = {R. Widmer and G. Masters and F. Gilbert},
-     JOURNAL = {\gji},
-     PAGES = {559--576},
-     TITLE = {{Observably split multiplets---data analysis and interpretation in terms of large-scale aspherical structure}},
-     VOLUME = {111},
-     YEAR = {1992}
-}
-
-
- at phdthesis{Wong89,
-     AUTHOR = {Y. K. Wong},
-     TITLE = {{Upper Mantle Heterogeneity from Phase and Amplitude Data of Mantle Waves}},
-     SCHOOL = {Harvard University},
-     YEAR = {1989}
-}
-
- at article{WuLevshin94,
-     AUTHOR = {F. T. Wu and A. Levshin},
-     JOURNAL = {\pepi},
-     PAGES = {59--77},
-     TITLE = {{Surface wave group velocity tomography of East Asia}},
-     VOLUME = {94},
-     YEAR = {1994}
-}
-
-
- at article{WuAki85,
-     AUTHOR = {R. Wu and K. Aki},
-     JOURNAL = {\geop},
-     PAGES = {582--595},
-     TITLE = {{Scattering characteristics of elastic waves by an elastic heterogeneity}},
-     VOLUME = {50},
-     YEAR = {1985}
-}
-
- at article{Zhao00,
-     AUTHOR = {L. Zhao and T. H. Jordan and C. H. Chapman},
-     JOURNAL = {\gji},
-     PAGES = {558--576},
-     TITLE = {{Three-dimensional Fr\'{e}chet differential kernels for seismic delay times}},
-     VOLUME = {141},
-     YEAR = {2000}
-}
-
-
- at article{Zhao06,
-     AUTHOR = {L. Zhao and T. H. Jordan},
-     JOURNAL = {\gji},
-     TITLE = {{Structural sensitivities of finite-frequency seismic waves: a full-wave approach}},
-     VOLUME = {165},
-     PAGES = {981--990},
-     YEAR = {2006}
-}
-
- at article{Zhou04,
-     AUTHOR = {Y. Zhou and F. A. Dahlen and G. Nolet},
-     JOURNAL = {\gji},
-     PAGES = {142--168},
-     TITLE = {{Three-dimensional sensitivity kernels for surface wave observables}},
-     VOLUME = {158},
-     YEAR = {2004}
-}
-
-
- at article{Zhou05,
-     AUTHOR = {Y. Zhou and F. A. Dahlen and G. Nolet and G. Laske},
-     JOURNAL = {\gji},
-     PAGES = {1087--1111},
-     TITLE = {{Finite-frequency effects in global surface-wave tomography}},
-     VOLUME = {163},
-     YEAR = {2005}
-}
-
- at article{Zhou06,
-     AUTHOR = {},
-     JOURNAL = {\gji},
-     PAGES = {},
-     TITLE = {{}},
-     VOLUME = {},
-     YEAR = {}
-}
-
-
- at article{Zurn00,
-     AUTHOR = {W. Z\"{u}rn and G. Laske and R. Widmer-Schnidrig and F. Gilbert},
-     JOURNAL = {\gji},
-     PAGES = {113--118},
-     TITLE = {{Observation of Coriolis coupled modes below 1 mHz}},
-     VOLUME = {143},
-     YEAR = {2000}
-}
-
-
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% Woodhouse papers
-
- at article{Woodhouse74,
-     AUTHOR = {J. H. Woodhouse},
-     JOURNAL = {\gjras},
-     PAGES = {461--490},
-     TITLE = {{Surface waves in a laterally varying layered structure}},
-     VOLUME = {37},
-     YEAR = {1974}
-}
-
-
- at incollection{DW83book,
-     AUTHOR = {A. Dziewonski and J. H. Woodhouse},
-     TITLE = {{Studies of the seismic source using normal-mode theory}},
-     BOOKTITLE = {Earthquakes: observation, theory and interpretation: notes from the International School of Physics ``Enrico Fermi'' (1982: Varenna, Italy)},
-     PUBLISHER = {North-Holland Pub.},
-     ADDRESS = {Amsterdam},
-     EDITOR = {H. Kanamori and E. Boschi},
-     PAGES = {45--137},
-     VOLUME = {LXXXV},
-     YEAR = {1983}
-}
-
-
- at article{DW83,
-     AUTHOR = {A. Dziewonski and J. H. Woodhouse},
-     TITLE = {{An experiment in the systematic study of global seismicity: centroid-moment tensor solutions for 201 moderate and large earthquakes of 1981}},
-     JOURNAL = {\jgr},
-     VOLUME = {88},
-     PAGES = {3247--3271},
-     YEAR = {1983}
-}
-
-
- at article{WD84,
-     AUTHOR = {J. H. Woodhouse and A. M. Dziewonski},
-     JOURNAL = {\jgr},
-     PAGES = {5953--5986},
-     TITLE = {{Mapping the upper mantle: Three-dimensional modeling of Earth structure by inversion of seismic waveforms}},
-     VOLUME = {89},
-     YEAR = {1984}
-}
-
-
- at article{WW86,
-     AUTHOR = {J. H. Woodhouse and Y. K. Wong},
-     JOURNAL = {\gjras},
-     PAGES = {753--773},
-     TITLE = {{Amplitude, phase and path anomalies of mantle waves}},
-     VOLUME = {87},
-     YEAR = {1986}
-}
-
-
- at article{Woodhouse86,
-     AUTHOR = {J. H. Woodhouse and D. Giardini and X.-D. Li},
-     JOURNAL = {\grl},
-     PAGES = {1549--1552},
-     TITLE = {{Evidence for inner core anisotropy from free oscillations}},
-     VOLUME = {13},
-     YEAR = {1986}
-}
-
-
- at article{DW87,
-     AUTHOR = {A. Dziewonski and J. H. Woodhouse},
-     TITLE = {{Global images of the Earth's interior}},
-     JOURNAL = {\sci},
-     VOLUME = {236},
-     PAGES = {37--48},
-     YEAR = {1987}
-}
-
- at article{WD89,
-     AUTHOR = {J. H. Woodhouse and A. M. Dziewonski},
-     TITLE = {{Seismic modelling of the Earth's large-scale three-dimensional structure}},
-     JOURNAL = {\ptrsl},
-     VOLUME = {328},
-     PAGES = {291--308},
-     YEAR = {1989}
-}
-
-
- at article{RobertsonWoodhouse95,
-     AUTHOR = {G. S. Robertson and J. H. Woodhouse},
-     TITLE = {{Evidence for proportionality of $P$ and $S$ heterogeneity in the lower mantle}},
-     JOURNAL = {\gji},
-     VOLUME = {123},
-     PAGES = {85--116},
-     YEAR = {1995}
-}
-
-
- at article{TW95,
-     AUTHOR = {J. Trampert and J. H. Woodhouse},
-     JOURNAL = {\gji},
-     PAGES = {675--690},
-     TITLE = {{Global phase velocity maps of Love and Rayleigh waves between 40 and 150 seconds}},
-     VOLUME = {122},
-     YEAR = {1995}
-}
-
-
- at article{TW96,
-     AUTHOR = {J. Trampert and J. H. Woodhouse},
-     JOURNAL = {\grl},
-     PAGES = {21--24},
-     TITLE = {{High resolution global phase velocity distribution}},
-     VOLUME = {23},
-     YEAR = {1996}
-}
-
-
- at article{TW01,
-     AUTHOR = {J. Trampert and J. H. Woodhouse},
-     JOURNAL = {\gji},
-     PAGES = {165--174},
-     TITLE = {{Assessment of global phase velocity models}},
-     VOLUME = {144},
-     YEAR = {2001}
-}
-
-
- at article{TW03,
-     AUTHOR = {J. Trampert and J. H. Woodhouse},
-     JOURNAL = {\gji},
-     PAGES = {154--165},
-     TITLE = {{Global anisotropic phase velocity maps for fundamental mode surface waves between 40 and 150 s}},
-     VOLUME = {154},
-     YEAR = {2003}
-}
-
-
- at incollection{Woodhouse96,
-     AUTHOR = {J. H. Woodhouse},
-     TITLE = {{Long period seismology and the Earth's free oscillations}},
-     BOOKTITLE = {Seismic Modelling of Earth Structure},
-     PUBLISHER = {Editrice Compositori},
-     ADDRESS = {Bologna, Italy},
-     EDITOR = {E. Boschi and G. Ekstr\"{o}m and A. Morelli},
-     PAGES = {31--80},
-     YEAR = {1996}
-}
-
-
- at article{HeijstWoodhouse97,
-     AUTHOR = {H. J. van Heist and J. H. Woodhouse},
-     JOURNAL = {\gji},
-     PAGES = {209--230},
-     TITLE = {{Measuring surface-wave overtone phase velocities using a mode-branch stripping technique}},
-     VOLUME = {131},
-     YEAR = {1997}
-}
-
-
- at article{SharrockWoodhouse98,
-     AUTHOR = {D. S. Sharrock and J. H. Woodhouse},
-     JOURNAL = {\eps},
-     PAGES = {1013--1018},
-     TITLE = {{Investigation of the time dependent inner core structure by the analysis of free oscillation spectra}},
-     VOLUME = {50},
-     YEAR = {1998}
-}
-
-
- at article{SelbyWoodhouse00,
-     AUTHOR = {N. D. Selby and J. H. Woodhouse},
-     JOURNAL = {\gji},
-     PAGES = {933--940},
-     TITLE = {{Controls on Rayleigh wave amplitudes: attenuation and focusing}},
-     VOLUME = {142},
-     YEAR = {2000}
-}
-
-
- at article{Deuss00,
-     AUTHOR = {A. Deuss and J. H. Woodhouse and H. Paulssen and J. Trampert},
-     JOURNAL = {\gji},
-     PAGES = {67--73},
-     TITLE = {{The observation of inner core shear waves}},
-     VOLUME = {142},
-     YEAR = {2000}
-}
-
-
- at article{Deuss01,
-     AUTHOR = {A. Deuss and J. H. Woodhouse},
-     JOURNAL = {\sci},
-     PAGES = {354--357},
-     TITLE = {{Seismic observations of splitting of the mid-transition zone discontinuity in earth's mantle}},
-     VOLUME = {294},
-     YEAR = {2001}
-}
-
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% books
-
- at book{,
-     TITLE = {},
-     AUTHOR = {},
-     PUBLISHER = {},
-     ADDRESS = {},
-     YEAR = {}
-}
-
-
- at book{AkiRichards80,
-     ADDRESS = {San Francisco, Calif.},
-     AUTHOR = {K. Aki and P. G. Richards},
-     PUBLISHER = {W. H. Freeman},
-     TITLE = {Quantitative Seismology, Theory and Methods},
-     YEAR = {1980}
-}
-
- at book{AkiRichards02,
-     ADDRESS = {San Francisco, Calif.},
-     AUTHOR = {K. Aki and P. G. Richards},
-     PUBLISHER = {University Science Books},
-     TITLE = {Quantitative Seismology},
-     EDITION = {2},
-     YEAR = {2002}
-}
-
-
- at book{Arfken,
-     ADDRESS = {San Diego, Calif.},
-     AUTHOR = {G. B. Arfken and H. J. Weber},
-     PUBLISHER = {Academic Press},
-     TITLE = {Mathematical Methods for Physicists},
-     YEAR = {1995},
-     EDITION = {4}
-}
-
-
- at book{Claerbout,
-     ADDRESS = {Cambridge},
-     AUTHOR = {J. F. Claerbout},
-     PUBLISHER = {Cambridge~U. Press},
-     TITLE = {Fundamentals of Geophysical Data Processing},
-     EDITION = {2},
-     YEAR = {1985}
-}
-
-
- at book{Blakely,
-     AUTHOR = {R. J. Blakely},
-     PUBLISHER = {Cambridge~U. Press},
-     TITLE = {Potential Theory in Gravity $\&$ Magnetic Applications},
-     YEAR = {1995}
-}
-
-
- at book{BrownChurchill,
-     ADDRESS = {Boston, Mass.},
-     AUTHOR = {J. W. Brown and R. V. Churchill},
-     PUBLISHER = {McGraw Hill},
-     TITLE = {Fourier Series and Boundary Value Problems},
-     EDITION = {6},
-     YEAR = {2001}
-}
-
- at book{Chadwick,
-     TITLE = {Continuum Mechanics: Concise Theory and Problems},
-     AUTHOR = {P. Chadwick},
-     PUBLISHER = {Dover},
-     ADDRESS = {Mineola, New~York},
-     YEAR = {1976}
-}
-
- at book{DT,
-     ADDRESS = {New Jersey},
-     AUTHOR = {F. A. Dahlen and J. Tromp},
-     PUBLISHER = {Princeton U. Press},
-     TITLE = {Theoretical Global Seismology},
-     YEAR = {1998}
-}
-
- at book{Gill81,
-     TITLE = {Orogenic Andesites and Plate Tectonics},
-     AUTHOR = {J. B. Gill},
-     PUBLISHER = {Springer-Verlag},
-     ADDRESS = {New York},
-     YEAR = {1981}
-}
-
-
- at book{GRe1,
-     ADDRESS = {New Jersey},
-     AUTHOR = {B. Gutenberg and C. F. Richter},
-     PUBLISHER = {Princeton U. Press},
-     TITLE = {Seismicity of the Earth and Associated Phenomena},
-     EDITION = {1},
-     YEAR = {1949}
-}
-
- at book{GRe2,
-     ADDRESS = {New Jersey},
-     AUTHOR = {B. Gutenberg and C. F. Richter},
-     PUBLISHER = {Princeton U. Press},
-     TITLE = {Seismicity of the Earth and Associated Phenomena},
-     EDITION = {2},
-     YEAR = {1954}
-}
-
-
- at book{Hansen,
-     TITLE = {Rank-Deficient and Discrete Ill-Posed Problems},
-     AUTHOR = {P. C. Hansen},
-     PUBLISHER = {SIAM},
-     ADDRESS = {Philadelphia, Penn.},
-     YEAR = {1998}
-}
-
-
- at book{Malvern,
-     TITLE = {Introduction to the Mechanics of a Continuous Medium},
-     AUTHOR = {L. E. Malvern},
-     PUBLISHER = {Prentice-Hall},
-     ADDRESS = {Upper Saddle River, New Jersey},
-     YEAR = {1969}
-}
-
-
- at book{Edmonds60,
-     ADDRESS = {Princeton, New Jersey},
-     AUTHOR = {A. R. Edmonds},
-     PUBLISHER = {Princeton U. Press},
-     TITLE = {Angular Momentum in Quantum Mechanics},
-     YEAR = {1960},
-     EDITION = {2}
-}
-
-
- at book{Gubbins90,
-     AUTHOR = {D. Gubbins},
-     TITLE = {Seismology and Plate Tectonics},
-     PUBLISHER = {Cambridge U. Press},
-     ADDRESS = {Cambridge},
-     YEAR = {1990}
-}
-
-
- at book{JB40,
-     ADDRESS = {London},
-     AUTHOR = {H. Jeffreys and K. E. Bullen},
-     PUBLISHER = {British Association for the Advancement of Science},
-     TITLE = {Seismological Tables},
-     YEAR = {1940}
-}
-
-
- at book{Kreyszig88,
-     ADDRESS = {New York},
-     AUTHOR = {E. Kreyszig},
-     PUBLISHER = {Wiley},
-     TITLE = {Advanced Engineering Mathematics},
-     YEAR = {1988}
-}
-
-
- at book{LayWallace95,
-     ADDRESS = {San Diego},
-     AUTHOR = {T. Lay and T. C. Wallace},
-     PUBLISHER = {Academic Press},
-     TITLE = {Modern Global Seismology},
-     YEAR = {1995}
-}
-
- at book{Love11,
-     ADDRESS = {Cambridge},
-     AUTHOR = {A. E. H.  Love},
-     PUBLISHER = {Cambridge~U. Press},
-     TITLE = {Some Problems in Geodynamics},
-     YEAR = {1911}
-}
-
- at book{Love27,
-     TITLE = {A Treatise on the Mathematical Theory of Elasticity},
-     AUTHOR = {A. E. H. Love},
-     PUBLISHER = {Cambridge~U. Press},
-     ADDRESS = {Cambridge},
-     EDITION = {4},
-     YEAR = {1927}
-}
-
- at book{Kennett01,
-     TITLE = {The Seismic Wavefield: Introduction and Theoretical Development},
-     AUTHOR = {B. L. N. Kennett},
-     PUBLISHER = {Cambridge~U. Press},
-     ADDRESS = {Cambridge},
-     YEAR = {2001}
-}
-
- at book{Kennett02,
-     TITLE = {The Seismic Wavefield: Interpretation of Seismograms on Regional and Global Scales},
-     AUTHOR = {B. L. N. Kennett},
-     PUBLISHER = {Cambridge~U. Press},
-     ADDRESS = {Cambridge},
-     YEAR = {2002}
-}
-
- at book{Menke,
-     TITLE = {Geophysical Data Analysis: Discrete Inverse Theory},
-     AUTHOR = {W. Menke},
-     PUBLISHER = {Academic Press},
-     ADDRESS = {San Diego, Calif.},
-     YEAR = {1989}
-}
-
- at book{Oneil,
-     TITLE = {Advanced Engineering Mathematics},
-     AUTHOR = {P. V. O'Neil},
-     PUBLISHER = {Wadsworth},
-     ADDRESS = {Belmont, Calif.},
-     YEAR = {1983}
-}
-
- at book{PercivalWalden93,
-     TITLE = {Spectral Analysis for Physical Applications},
-     AUTHOR = {D. Percival and A. Walden},
-     PUBLISHER = {Cambridge~U. Press},
-     YEAR = {1993}
-}
-
- at book{Press94,
-     author = {W. H. Press and S. A. Teukolsky and W. T. Vetterling and B. P. Flannery},
-     title = {{Numerical Recipes: The Art of Scientific Computing}},
-     publisher = {Cambridge~U. Press},
-     address = {Cambridge},
-     year = {1994}
-}
-
- at book{Reynolds,
-     AUTHOR = {J. M. Reynolds},
-     ADDRESS = {Chichester, New~York},
-     PUBLISHER = {John Wiley},
-     TITLE = {An Introduction to Applied and Environmental Geophysics},
-     YEAR = {1997}
-}
-
- at book{Shearer99,
-     TITLE = {Introduction to Seismology},
-     AUTHOR = {P. M. Shearer},
-     ADDRESS = {Cambridge},
-     PUBLISHER = {Cambridge~U. Press},
-     YEAR = {1999}
-}
-
- at book{TS,
-     TITLE = {Geodynamics},
-     AUTHOR = {D. L. Turcotte and G. Schubert},
-     ADDRESS = {Cambridge},
-     PUBLISHER = {Cambridge~U. Press},
-     EDITION = {2},
-     YEAR = {2002}
-}
-
- at unpublished{Trefethen96,
-     TITLE = {Finite Difference and Spectral Methods for Ordinary and Partial Differential Equations},
-     AUTHOR = {L. N. Trefethen},
-     NOTE = {{available at http://web.comlab.ox.ac.uk/oucl/work/nick.trefethen/ pdetext.html}},
-     YEAR = {1996}
-}
-
- at book{Trefethen00,
-     TITLE = {Spectral Methods in Matlab},
-     AUTHOR = {L. N. Trefethen},
-     ADDRESS = {Philadelphia, Penn.},
-     PUBLISHER = {SIAM},
-     YEAR = {2000}
-}
-
-%------------------------
-% Latex sources
-
- at book{Lamport94,
-     TITLE = {\LaTeX: A Document Preparation System},
-     AUTHOR = {L. Lamport},
-     ADDRESS = {Reading, Mass.},
-     PUBLISHER = {Addison-Wesley},
-     YEAR = {1994},
-     EDITION = {2}
-}
-
- at book{Goossens94,
-     TITLE = {The \LaTeX\ Companion},
-     AUTHOR = {M. Goossens and F. Mittelback and A. Samari},
-     ADDRESS = {Reading, Mass.},
-     PUBLISHER = {Addison-Wesley},
-     YEAR = {1994}
-}
-
- at misc{LatexProject,
-     TITLE = {LaTeX -- A document preparation system},
-     NOTE = {\verb+http://www.latex-project.org/+},
-}
-
- at misc{prosper,
-     TITLE = {prosper},
-     NOTE = {\verb+http://prosper.sourceforge.net/+},
-}
-
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% articles related to spherical-hexagonal grids (Oxford thesis)
-
- at article{Williamson68,
-     AUTHOR = {D. L. Williamson},
-     JOURNAL = {Tellus},
-     PAGES = {642--653},
-     TITLE = {{Integration of the barotropic vorticity equation on a spherical geodesic grid}},
-     VOLUME = {20},
-     YEAR = {1968}
-}
-
- at article{Williamson69,
-     AUTHOR = {D. L. Williamson},
-     JOURNAL = {\mwr},
-     PAGES = {885--895},
-     TITLE = {{Numerical integration of fluid flow over triangular grids}},
-     VOLUME = {97},
-     YEAR = {1969}
-}
-
- at article{Williamson70,
-     AUTHOR = {D. L. Williamson},
-     JOURNAL = {\mwr},
-     PAGES = {512--520},
-     TITLE = {{Integration of the primitive barotropic model over a spherical geodesic grid}},
-     VOLUME = {98},
-     YEAR = {1970}
-}
-
- at article{Sadourny68,
-     AUTHOR = {R. Sadourny and A. Arakawa and Y. Mintz},
-     JOURNAL = {\mwr},
-     PAGES = {351--356},
-     TITLE = {{Integration of the non-divergent barotropic vorticity equation with an icosahedral-hexagonal grid for the sphere}},
-     VOLUME = {96},
-     YEAR = {1968}
-}
-
-
- at article{Sadourny69,
-     AUTHOR = {R. Sadourny and P. Morel},
-     JOURNAL = {\mwr},
-     PAGES = {439--445},
-     TITLE = {{A finite-difference approximation of the primitive equations for a hexagonal grid on a plane}},
-     VOLUME = {100},
-     YEAR = {1969}
-}
-
-
- at article{Sadourny72,
-     AUTHOR = {R. Sadourny},
-     JOURNAL = {\mwr},
-     PAGES = {136--144},
-     TITLE = {{Conservative finite-difference approximations of the primitive equations on quasi-uniform spherical grids}},
-     VOLUME = {100},
-     YEAR = {1972}
-}
-
-
- at article{Cullen74,
-     AUTHOR = {M. J. P. Cullen},
-     JOURNAL = {\qjrms},
-     PAGES = {555--562},
-     TITLE = {{Integration of the primitive equations on a sphere using the finite element method}},
-     VOLUME = {100},
-     YEAR = {1974}
-}
-
-
- at article{Augenbaum85,
-     AUTHOR = {J. M. Augenbaum and C. S. Peskin},
-     JOURNAL = {\jcp},
-     PAGES = {177--192},
-     TITLE = {{On the construction of the Voronoi mesh on a sphere}},
-     VOLUME = {14},
-     YEAR = {1985}
-}
-
-
- at article{BF85,
-     AUTHOR = {J. R. Baumgardner and P. O. Frederickson},
-     JOURNAL = {\sjna},
-     PAGES = {1107--1115},
-     TITLE = {{Icosahedral discretization of the two-sphere}},
-     VOLUME = {22},
-     YEAR = {1985}
-}
-
-
- at inproceedings{Masuda87,
-     AUTHOR = {Y. Masuda and H. Ohnishi},
-     ORGANIZATION = {Japan Meteorological Society},
-     PAGES = {317--326},
-     TITLE = {{An integration scheme of the primitive equation model with an icosahedral-hexagonal grid system and its application to the shallow-water equations}},
-     BOOKTITLE = {Short- and Medium-Range Numerical Weather Prediction},
-     EDITOR = {T. Matsumo},
-     YEAR = {1987}
-}
-
-
- at article{Heikes95a,
-     AUTHOR = {R. Heikes and D. A. Randall},
-     JOURNAL = {\mwr},
-     PAGES = {1862--1880},
-     TITLE = {{Numerical integration of the shallow-water equations on a twisted icosahedral grid. Part I: Basic design and results of tests}},
-     VOLUME = {123},
-     YEAR = {1995}
-}
-
-
- at article{Heikes95b,
-     AUTHOR = {R. Heikes and D. A. Randall},
-     JOURNAL = {\mwr},
-     PAGES = {1881--1887},
-     TITLE = {{Numerical integration of the shallow-water equations on a twisted icosahedral grid. Part II: A detailed description of the grid and an analysis of numerical accuracy}},
-     VOLUME = {123},
-     YEAR = {1995}
-}
-
-
- at article{Williamson92,
-     AUTHOR = {D. L. Williamson and J. B. Drake and J. J. Hack and R. Jakob and P. N. Swarztrauber},
-     JOURNAL = {\jcp},
-     PAGES = {211--224},
-     TITLE = {{A standard test for numerical approximations to the shallow water equations in spherical geometry}},
-     VOLUME = {102},
-     YEAR = {1992}
-}
-
-
- at article{Stuhne96,
-     AUTHOR = {G. R. Stuhne and W. R. Peltier},
-     JOURNAL = {\jcp},
-     PAGES = {58--81},
-     TITLE = {{Vortex erosion and amalgamation in a new model of large scale flow on the sphere}},
-     VOLUME = {128},
-     YEAR = {1996}
-}
-
-
-
- at article{Ronchi96,
-     AUTHOR = {C. Ronchi and R. Iacono and P. S. Paolucci},
-     JOURNAL = {\jcp},
-     PAGES = {93--114},
-     TITLE = {{The ``cubed sphere'': A new method for the solution of partial differential equations in spherical geometry}},
-     VOLUME = {124},
-     YEAR = {1996}
-}
-
-
- at article{Rancic96,
-     AUTHOR = {M. Rancic and R. J. Purser and F. Mesinger},
-     JOURNAL = {\qjrms},
-     PAGES = {959--982},
-     TITLE = {{A global shallow-water model using an expanded spherical cube: Gnomic versus conformal coordinates}},
-     VOLUME = {122},
-     YEAR = {1996}
-}
-
-
- at article{Thuburn97,
-     AUTHOR = {J. Thuburn},
-     JOURNAL = {\mwr},
-     PAGES = {2328--2347},
-     TITLE = {{A PV-based shallow-water model on a hexagonal-icosahedral grid}},
-     VOLUME = {125},
-     YEAR = {1997}
-}
-
-
- at article{Saff97,
-     AUTHOR = {E. B. Saff and A. B. J. Kuijlaars},
-     JOURNAL = {\mi},
-     PAGES = {5--11},
-     TITLE = {{Distributing many points on a sphere}},
-     VOLUME = {19},
-     NUMBER = {1},
-     YEAR = {1997}
-}
-
-
- at article{Swarz97,
-     AUTHOR = {P. N. Swarztrauber and D. L. Williamson and J. B. Drake},
-     JOURNAL = {\dao},
-     PAGES = {679--706},
-     TITLE = {{The Cartesian method for solving partial differential equations in spherical geometry}},
-     VOLUME = {27},
-     YEAR = {1997}
-}
-
-
- at article{CuiFreeden97,
-     TITLE = {{Equidistribution on the sphere}},
-     AUTHOR = {J. Cui and W. Freeden},
-     JOURNAL = {\sjsc},
-     PAGES = {595--609},
-     VOLUME = {18},
-     NUMBER = {2},
-     YEAR = {1997}
-}
-
-
- at techreport{Ringler99,
-     AUTHOR = {T. D. Ringler and R. P. Heikes and D. A. Randall},
-     INSTITUTION = {Colorado State U. Dept. of Atmospheric Science},
-     PAGES = {1--59},
-     TITLE = {{Modeling the atmospheric general circulation using a spherical geodesic grid: A technical report on a new class of dynamical cores}},
-     YEAR = {1999}
-}
-
-
- at article{Stuhne99,
-     AUTHOR = {G. R. Stuhne and W. R. Peltier},
-     JOURNAL = {\jcp},
-     PAGES = {23--58},
-     TITLE = {{New icosahedral grid-point discretizations of the shallow water equations on the sphere}},
-     VOLUME = {148},
-     YEAR = {1999}
-}
-
-
- at article{Ringler00,
-     AUTHOR = {T. D. Ringler and R. P. Heikes and D. A. Randall},
-     JOURNAL = {\mwr},
-     PAGES = {2471--2489},
-     TITLE = {{Modeling the atmospheric general circulation using a spherical geodesic grid: A new class of dynamical cores}},
-     VOLUME = {128},
-     YEAR = {2000}
-}
-
-
- at book{Boyd,
-     ADDRESS = {Mineola, New York},
-     AUTHOR = {J. P. Boyd},
-     PUBLISHER = {Dover},
-     TITLE = {Chebyschev and Fourier Spectral Methods},
-     EDITION = {2},
-     YEAR = {2001}
-}
-
- at article{Randall02,
-     AUTHOR = {D. A. Randall and T. D. Ringler and R. P. Heikes and P. Jones and J. Baumgardner},
-     JOURNAL = {\cse},
-     PAGES = {32--41},
-     TITLE = {{Climate modeling with spherical geodesic grids}},
-     VOLUME = {3},
-     MONTH = {September/October},
-     YEAR = {2002}
-}
-
- at article{Ringler02a,
-     TITLE = {{A potential enstrophy and energy conserving numerical scheme for solution of the shallow-water equations on a geodesic grid}},
-     AUTHOR = {T. D. Ringler and D. A. Randall},
-     JOURNAL = {\mwr},
-     PAGES = {1397--1410},
-     VOLUME = {130},
-     YEAR = {2002}
-}
-
- at article{Ringler02b,
-     TITLE = {{The ZM grid: An alternative to the Z grid}},
-     AUTHOR = {T. D. Ringler and D. A. Randall},
-     JOURNAL = {\mwr},
-     PAGES = {1411--1422},
-     VOLUME = {130},
-     YEAR = {2002}
-}
-
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

Modified: seismo/3D/ADJOINT_TOMO/flexwin/latex/flexwin_manual.pdf
===================================================================
(Binary files differ)

Modified: seismo/3D/ADJOINT_TOMO/flexwin/latex/flexwin_manual.tex
===================================================================
--- seismo/3D/ADJOINT_TOMO/flexwin/latex/flexwin_manual.tex	2008-07-08 09:57:07 UTC (rev 12392)
+++ seismo/3D/ADJOINT_TOMO/flexwin/latex/flexwin_manual.tex	2008-07-08 11:34:27 UTC (rev 12393)
@@ -11,7 +11,10 @@
 \usepackage[noend]{algorithmic}
 
 \onehalfspacing
+\setlength\parindent{0in}
+\addtolength{\parskip}{\baselineskip}
 
+
 \input{def_base}
 \begin{document}
 \title{FLEXWIN: An automated time-window selection algorithm for seismic tomography}
@@ -22,10 +25,8 @@
 
 \input{manual_introduction}
 \input{manual_technical}
-%\input{manual_method}
 \input{manual_tuning}
 \input{manual_other}
-%\input{figures_manual}
 
 \bibliographystyle{plainnat}
 \bibliography{AM-allcitations}

Modified: seismo/3D/ADJOINT_TOMO/flexwin/latex/manual_introduction.tex
===================================================================
--- seismo/3D/ADJOINT_TOMO/flexwin/latex/manual_introduction.tex	2008-07-08 09:57:07 UTC (rev 12392)
+++ seismo/3D/ADJOINT_TOMO/flexwin/latex/manual_introduction.tex	2008-07-08 11:34:27 UTC (rev 12393)
@@ -24,8 +24,6 @@
 the algorithm was designed for use in 3D-3D adjoint tomography, its inherent
 flexibility should make it useful in many data-selection applications.
 
-For a detailed introduction to FLEXWIN as applied to seismic tomography, please consult \cite{MaggiEtal2008}.
+For a detailed introduction to FLEXWIN as applied to seismic tomography, please consult \cite{MaggiEtal2008} ({\tt flexwin/latex/flexwin\_paper.pdf}).  If you use FLEXWIN for your own research, please cite \cite{MaggiEtal2008}.
 
-If you use FLEXWIN for your own research, please cite \cite{MaggiEtal2008}.
 
-

Modified: seismo/3D/ADJOINT_TOMO/flexwin/latex/manual_other.tex
===================================================================
--- seismo/3D/ADJOINT_TOMO/flexwin/latex/manual_other.tex	2008-07-08 09:57:07 UTC (rev 12392)
+++ seismo/3D/ADJOINT_TOMO/flexwin/latex/manual_other.tex	2008-07-08 11:34:27 UTC (rev 12393)
@@ -1,14 +1,31 @@
-\chapter*{Bug reports and suggestions for improvements}
+\chapter{More stuff\ldots}
+\section{Bug reports and suggestions for improvements}
 To report bugs or suggest improvements to the code, please send an email to the CIG Computational Seismology Mailing List (cig-seismo at geodynamics.org) or Alessia Maggi (alessia at sismo.u-strasbg.fr), and/or use our online bug tracking system Roundup (www.geodynamics.org/roundup).
 
-\chapter*{Notes and Acknowledgments}
+\section{Notes and Acknowledgments}
 [FIXME]  The filtering routines used in {\tt seismo\_subs.f90} are based on the SacLib libraries constructed by Brian Savage from the original source code of SAC (developed at Lawrence Livermore).  What about SAC licences??
 
 The main developers of the FLEXWIN source code are Alessia Maggi and Carl Tape.  The following individuals (listed in alphabetical order) have also contributed to the development of the source code: Daniel Chao, Min Chen, Jeroen Tromp.  The following individuals (listed in alphabetical order) contributed to this manual: Sue Kientz, Alessia Maggi, Carl Tape \ldots
 
-\chapter*{Copyright}
+\section{Copyright}
 Copyright XXX 2008, by the California Institute of Technology (U.S.) and University of Strasbourg (France).  ALL RIGHTS RESERVED.  U.S. Government Sponsorship Acknowledged.
 
-Any commercial use must be negotiated with the Office of Technology Transfer at the California Institute of Technology.  This software may be subject to U.S. export control laws and regulations.  By accepting this software, the user agrees to comply with all applicable U.S. export las and regulations, including the International Traffic and Arms Regulations, 22 C.F.R 120-130 and the Export Administration Regulations, 15 C.F.R. 730-744.  User has the responsibility to obtain export licenses, or other export authority as may be required before exporting such information to foreign countries or providing access to foreign nationals.  In no event shall the California Institute of Technology be liable to any party for direct, indirect, special, incidental or consequential damages, including lost profits, arising out of the use of this software and its documentation, even if the California Institute of Technology has been advised of the possibility of such damage.
+Any commercial use must be negotiated with the Office of Technology Transfer at
+the California Institute of Technology.  This software may be subject to U.S.
+export control laws and regulations.  By accepting this software, the user
+agrees to comply with all applicable U.S. export las and regulations, including
+the International Traffic and Arms Regulations, 22 C.F.R 120-130 and the Export
+Administration Regulations, 15 C.F.R. 730-744.  User has the responsibility to
+obtain export licenses, or other export authority as may be required before
+exporting such information to foreign countries or providing access to foreign
+nationals.  In no event shall the California Institute of Technology be liable
+to any party for direct, indirect, special, incidental or consequential
+damages, including lost profits, arising out of the use of this software and
+its documentation, even if the California Institute of Technology has been
+advised of the possibility of such damage.
 
-The California Institute of Technology specifically disclaims any warranties, included the implied warranties or merchantability and fitness for a particular purpose.  The software and documentation provided hereunder is on an "as is" basis, and the California Institute of Technology has no obligations to provide maintenance, support, updates, enhancements or modifications.
\ No newline at end of file
+The California Institute of Technology specifically disclaims any warranties,
+included the implied warranties or merchantability and fitness for a particular
+purpose.  The software and documentation provided hereunder is on an `as is'
+basis, and the California Institute of Technology has no obligations to provide
+maintenance, support, updates, enhancements or modifications.

Modified: seismo/3D/ADJOINT_TOMO/flexwin/latex/manual_technical.tex
===================================================================
--- seismo/3D/ADJOINT_TOMO/flexwin/latex/manual_technical.tex	2008-07-08 09:57:07 UTC (rev 12392)
+++ seismo/3D/ADJOINT_TOMO/flexwin/latex/manual_technical.tex	2008-07-08 11:34:27 UTC (rev 12393)
@@ -7,49 +7,179 @@
 In order to install and run, FLEXWIN requires:
 \begin{itemize}
 \item UNIX operating system (Linux, Solaris, MacOS \ldots)
-\item Other code : SAC / SacLib / libtau )
+\item a fortran compiler (gfortran, ifort, etc...) 
+\item other packages : (SAC, Seismic Analysis Code, available from IRIS)
 \end{itemize}
 
-SAC - more specifically the SAC library libsac.a - is required in order to for FLEXWIN to be able to read and write sac seismogram files.  Note that the bare bones of the code is not dependent on any input or output format for the data.  Should you prefer to use another seismogram format, you can write your own versions of {\tt read\_sac\_files(file\_s,file\_o)} in {\tt seismo\_subs.f90} and {\tt write\_lp\_sac(basename)} in {\tt io\_subs.f90}.
+FLEXWIN requires the following libraries external to the package in order to
+compile and run: libsacio.a and libSacLib.a.  Eventually, both libraries
+will be distributed by IRIS as part of the SAC package (at the moment only
+libsacio is distributed this way).  For the time being, you should compile
+libSacLib.a using the source code in the SacLib directory that accompanies
+flexwin.  
 
-The filtering and enveloping functionality used in this code comes from
-SacLib - {\bf should this be distributed with the code or made available separately?}
+{\bf Important note}: The SacLib directory is a temporary fix.  The SAC source code
+from which the SacLib library is compiled is proprietary and should not be
+distributed by anyone other than IRIS.  Brian Savage - the author of SacLib -
+is currently working on a new version of the library that will be distributed
+with future versions of SAC.  The official release of flexwin will require
+linkage to this new library.
 
-Travel-time prediction using IASPEI91 (not an essential feature of the code, but it can be useful for setting time-dependence of user parameters) requires libtau - {\bf should this be distributed with the code or made available separately?}
-
-
 \section{Obtaining the code}
 
 [TODO] Write this better once structure of code (and packages that will be
 delivered) is finalised.
 
-The code is available as a gzipped tarball from CIG (Computational Infrastructure for Geodynamics, {\tt http://www.geodynamics.org}). The tarball is unpacked using the follwing command 
+The code is available as a gzipped tarball from CIG (Computational Infrastructure for Geodynamics, {\tt http://www.geodynamics.org}). The tarball is unpacked by typing {\tt tar xvzf flexwin.tgz}.
+
+The package contains the flexwin code and documentation, as well as a set of
+test data, examples of user files for different scenarios, and a set of utility
+scripts that may be useful for running flexwin on large datasets.
+
+The contents of the flexwin directory are as follows:
+{\small
 \begin{verbatim}
-tar xvzf flexwin.tgz
+flexwin
+|-- Makefile.in
+|-- PAR_FILE
+|-- README
+|-- TODOs
+|-- configure
+|-- configure.ac
+|-- distaz.f
+|-- flexwin.f90
+|-- io_subs.f90
+|-- latex
+|-- make_gfortran
+|-- make_intel
+|-- make_intel_caltech
+|-- maxima.f90
+|-- measure_windows_xcorr.f90
+|-- measurement_module.f90
+|-- scripts
+|-- seismo_subs.f90
+|-- select_windows_stalta2.f90
+|-- test_data
+|-- travel_times.f90
+|-- ttimes_mod
+|-- user_files
+|-- user_functions.f90
+|-- user_parameters.f90
+`-- xcorr-measure.f90
 \end{verbatim}
-to obtain a {\tt FLEXWIN} directory containing the Fortran90 source code ({\tt
-.f90} files), a pdf copy of this manual ({\tt flexwin\_manual.pdf}), {\tt
-INSTALL} and {\tt README} text files with a bare bones instruction set to
-install and run the code, and a {\tt test\_data} directory containing a test
-data set to run the code on.
+}
 
-\section{Installation}
 
-[TODO] - Write this when you have cleaned up the distribution
+\section{Compilation}
 
-FLEXWIN is made up of a library of the subroutines which actually do the work,
-and an example front-end program which strings the relevant subroutines
-together into a full program.  This front-end program is only an example, showing the correct order of operations.  Feel free to make your own front-end.  
+[TODO] - Rewrite this for the official release.
 
-The makefiles contain the basic compilation instruction for the basic code
-(using sac i/o).  It is straightforward to modify them.
+{\bf Note}: Do NOT use the configure script for beta test compilation.  It will not
+work.
 
-make -f makefile clean
-make -f makefile executablename
+If your compiler of choice is gfortran, then you should be able to use the
+{\tt make\_gfortran} makefiles with only minor modifications (notably you may need to
+change the search path for the {\tt libsacio.a} library).  If you prefer another
+compiler, you should modify the OPT and FC lines in the makefiles accordingly.   
 
+{\bf Important note}: All the code is compiled with the -m32 option, which makes
+32bit binaries.  This option is currently required to enable compatibility with
+SAC.  Future versions of the SAC distribution may no longer require this
+compatibility flag.
+
+Steps to compile the flexwin package:
+\begin{enumerate}
+\item Compile {\tt libSacLib.a}.  In the {\tt SacLib} directory (which is outside the {\tt flexwin}
+directory) type: {\tt make -f make\_gfortran}.
+\item Compile {\tt libtau.a} and create {\tt iasp91.hed} and {\tt iasp91.tbl}.  In the
+{\tt flexwin/ttimes\_mod} directory type: {\tt make -f make\_gfortran}.  This will compile
+{\tt libtau.a}, and two programs, {\tt remodl} and {\tt setbrn}.  The makefile will also run
+{\tt remodl} and {\tt setbrn} to create the {\tt iasp91.hed} and {\tt iasp91.tbl} files.  You should
+then type {\tt make -f make\_gfortran install} to install the iasp91 files in the
+root directory.
+\item Compile {\tt flexwin}.  Edit the {\tt make\_gfortran} file in the root directory to ensure the {\tt SACLIBDIR} variable points to the location of your SAC libraries (by default {\tt /opt/sac/lib}).  Then type {\tt make -f make\_gfortran}.
+\end{enumerate}
+
+You should end up with the {\tt flexwin} executable.  The program requires the iasp91
+files (or links to them) to be present in the directory from which the code is
+launched. 
+
+
 \section{Running the Test case}
 
-[TODO]
+You should test your compiled code on the {\tt test\_data} dataset provided.  In the
+{\tt flexwin/test\_data} directory, type {\tt ./flexwin < input.test}.  The results of your
+run will be found in the {\tt MEASURE} subdirectory, and
+should match those found in the {\tt MEASURE.orig}
+subdirectory.
 
+You can also test the basic plotting script by running {\tt ./plot\_seismos\_gmt.sh
+MEASURE/ABKT.II.LHZ}, whose output will be
+{\tt MEASURE/ABKT.II.LHZ.seis.eps} and a corresponding .pdf
+file.  Your result should be identical to that shown in Figure~\ref{fg:test_data}.
 
+\begin{figure}
+\center \includegraphics[width=4in]{../test_data/MEASURE.orig/ABKT_II_LHZ_seis.pdf}
+\caption{\label{fg:test_data}
+Windowing results for the test data set, plotted using the {\tt ./plot\_seismos\_gmt.sh} script.
+}
+\end{figure}
 
+
+\section{Running FLEXWIN}
+
+In general, flexwin is run as follows: {\tt ./flexwin < input} where the {\tt input} file is formatted as follows:
+{\small
+\begin{verbatim}
+327
+RAW_DATA/9627721.CI.ADO.BHR.sac.d.fil
+SYNTH/ADO.CI.BHR.new.fil
+MEASURE/ADO.CI.BHR
+RAW_DATA/9627721.CI.ADO.BHT.sac.d.fil
+SYNTH/ADO.CI.BHT.new.fil
+MEASURE/ADO.CI.BHT
+RAW_DATA/9627721.CI.ADO.BHZ.sac.d.fil
+SYNTH/ADO.CI.BHZ.new.fil
+MEASURE/ADO.CI.BHZ
+....
+\end{verbatim}
+}
+
+i.e. the number of traces to be measured, followed by (in order) the path to
+the raw data sac file, the path to the synthetic sac file and the path and
+basename for the (many!) output files for that trace. 
+
+\section{Output files}
+Most output files are in ascii.  All file names start with the basename given
+in the input file for that trace:
+\begin{description}
+\item[basename.obs]	ascii observed seismogram (filtered) 
+\item[basename.syn]	ascii synthetic seismogram (filtered)
+\item[basename.obs\_lp.sac] sac observed seismogram (filtered)
+\item[basename.syn\_lp.sac] sac synthetic seismogram (filtered)
+\item[basename.env.obs]	ascii envelope of observed seismogram (filtered)
+\item[basename.env.syn]	ascii envelope of synthetic seismogram (filtered)
+\item[basename.win]		list of windows with theoretical phase arrival times
+\item[basename.win.qual]	list of windows with Tshift,CC,dlnA values 
+\item[basename.phases]		theoretical arrival times of phases
+\item[basename.stalta]		STA:LTA timeseries used to select the windows, and
+the time-dependent values of the STA:LTA water level, the cross-correlation
+limit $CC_0$, the time-lag limit $\Delta\tau_0$, amplitude ratio limit
+$\Delta\ln{A}_0$ and the window signal to noise limit $r_0$.
+\item[basename.info]	information on the path and some statistics
+\end{description}
+For more details about the file formats, read the {\tt write\_}
+subroutines in {\tt io\_subs.f90}.
+
+\section{Scripts}
+Several plotting routines ({\tt plot\_*.sh}) are provided as examples for
+plotting seismograms, measurements and adjoint sources.  All plotting is
+done in gmt.  These scripts will need to be modified to suit your
+particular plotting needs.
+
+The script {\tt extract\_event\_windowing\_stats.sh} extracts statistical
+information on the window selection process, on the measurements.  Again,
+you can use use this script as a template for your own information
+extraction needs.
+
+



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