[cig-commits] commit: merging tag with the current repo to avoid multi heads
Mercurial
hg at geodynamics.org
Mon Nov 24 11:31:21 PST 2008
changeset: 122:537d139cf964
parent: 121:8a7e07972acf
parent: 120:0096891fa4d4
user: Julian Giordani <julian.giordani at sci.monash.edu.au>
date: Thu Oct 16 14:56:43 2008 +1100
files: Apps/BuoyancyBenchmark/makefile Apps/BuoyancyBenchmark/tests/AnalyticPressure/makefile Apps/BuoyancyBenchmark/tests/makefile Apps/LidDrivenPIC/makefile Apps/LidDrivenPIC/tests/makefile Apps/PIC_Components/makefile Apps/RayleighTaylor/makefile Apps/RayleighTaylor/tests/AnalyticBlock/makefile Apps/RayleighTaylor/tests/AnalyticColumn/makefile Apps/RayleighTaylor/tests/makefile Apps/ThermoChem/Makefile.def Apps/ThermoChem/makefile Apps/makefile MaterialPoints/makefile MaterialPoints/src/makefile MaterialPoints/tests/makefile MaterialPoints/tests/plugins/makefile PopulationControl/makefile PopulationControl/src/makefile PopulationControl/tests/makefile PopulationControl/tests/plugins/makefile Utils/makefile Utils/src/makefile Utils/tests/makefile Voronoi/makefile Voronoi/src/makefile Voronoi/tests/makefile Voronoi/tests/plugins/makefile Weights/makefile Weights/src/makefile Weights/tests/makefile Weights/tests/plugins/makefile doc/Makefile.def doc/makefile libPICellerator/Makefile.def libPICellerator/Toolbox/makefile libPICellerator/makefile libPICellerator/src/makefile libPICellerator/tests/makefile makefile plugins/CalculateParticleDisplacement/makefile plugins/Output/MaterialCentroid/makefile plugins/Output/makefile plugins/makefile
description:
merging tag with the current repo to avoid multi heads
diff -r 8a7e07972acf -r 537d139cf964 .hgignore
--- a/.hgignore Thu Oct 16 13:30:48 2008 +1100
+++ b/.hgignore Thu Oct 16 14:56:43 2008 +1100
@@ -1,3 +1,10 @@
+# use glob syntax.
+syntax: glob
+
+*~
+
+# switch to regexp syntax.
+syntax: regexp
(^|/)\.svn($|/)
(^|/)\.hg($|/)
(^|/)\.hgtags($|/)
diff -r 8a7e07972acf -r 537d139cf964 Apps/BuoyancyBenchmark/makefile
--- a/Apps/BuoyancyBenchmark/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,74 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 277 2006-04-11 11:28:01Z PatrickSunter $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-SHELL := $(shell which bash)
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-
-include ${PROJ_ROOT}/Makefile.system
-
-subdirs = tests
-
-modName := $(shell basename `pwd` )
-mod = ${PROJECT}_${modName}
-includes = ${PROJECT}/${modName}
-
-SRCS = $(wildcard *.c)
-HDRS = $(wildcard *.h)
-
-XMLS_TARGET_DIR = ${EXAMPLES_DIR}/${modName}
-XMLS = $(wildcard *.xml)
-
-PROJ_LIBS = lib${PROJECT}Update.so lib${PROJECT}Materials.so
-EXTERNAL_INCLUDES =
-EXTERNAL_LIBS =
-packages = STGFEM PETSC STGDOMAIN STGERMAIN MPI XML MATH DL
-
-ifdef HAVE_PYTHON
- packages += PYTHON
-endif
-
-examples_xml = demo.xml
-
-# obtain defaults for required variables according to system and project location, and then run the build.
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 Apps/BuoyancyBenchmark/tests/AnalyticPressure/makefile
--- a/Apps/BuoyancyBenchmark/tests/AnalyticPressure/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,73 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 277 2006-04-11 11:28:01Z PatrickSunter $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-#Finds the Absolute path to the Project Root directory
-SHELL := /bin/bash
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-include ${PROJ_ROOT}/Makefile.system
-
-# Subdirectories
-subdirs := $(shell find * -type d -prune ! -name .svn )
-
-# Source Code and Header files
-SRCS := $(wildcard *.c)
-HDRS := $(wildcard *.h)
-
-# What to call the plugin
-modName := $(shell basename `pwd`)
-mod = ${PROJECT}_${modName}
-
-# Where to put header files
-includes = ${PROJECT}/${modName}
-
-# External Libraries and Headers
-EXTERNAL_INCLUDES =
-EXTERNAL_LIBS =
-packages = STGFEM PETSC STGDOMAIN STGERMAIN MPI XML MATH DL
-
-ifdef HAVE_PYTHON
- packages += PYTHON
-endif
-
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 Apps/BuoyancyBenchmark/tests/makefile
--- a/Apps/BuoyancyBenchmark/tests/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,65 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 277 2006-04-11 11:28:01Z PatrickSunter $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-# obtain defaults for required variables according to system and project location, and then run the build.
-SHELL := $(shell which bash)
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-
-include ${PROJ_ROOT}/Makefile.system
-
-subdirs = AnalyticPressure
-
-modName = $(shell basename `pwd | sed s/tests//g`)
-checks = $(wildcard *.sh)
-
-EXTERNAL_INCLUDES = -I${INC_DIR}/${PROJECT}
-
-XMLS_TARGET_DIR = ${EXAMPLES_DIR}/${modName}/tests
-XMLS = $(wildcard *.xml)
-
-EXTERNAL_INCLUDES =
-EXTERNAL_LIBS =
-packages = STGFEM PETSC STGDOMAIN STGERMAIN MPI XML MATH DL
-
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 Apps/LidDrivenPIC/makefile
--- a/Apps/LidDrivenPIC/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,75 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 518 2007-10-11 08:07:50Z SteveQuenette $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-SHELL := $(shell which bash)
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-
-include ${PROJ_ROOT}/Makefile.system
-
-subdirs = tests
-
-modName := $(shell basename `pwd` )
-mod = ${PROJECT}_${modName}
-includes = ${PROJECT}/${modName}
-
-SRCS = $(wildcard *.c)
-HDRS = $(wildcard *.h)
-
-XMLS_TARGET_DIR = ${EXAMPLES_DIR}/${modName}
-XMLS = $(wildcard *.xml)
-
-PROJ_LIBS = lib${PROJECT}Update.so lib${PROJECT}Materials.so
-EXTERNAL_INCLUDES =
-EXTERNAL_LIBS =
-packages = STGFEM PETSC STGDOMAIN STGERMAIN MPI XML MATH DL
-
-
-ifdef HAVE_PYTHON
- packages += PYTHON
-endif
-
-examples_xml = demo.xml
-
-# obtain defaults for required variables according to system and project location, and then run the build.
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 Apps/LidDrivenPIC/tests/makefile
--- a/Apps/LidDrivenPIC/tests/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,63 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 518 2007-10-11 08:07:50Z SteveQuenette $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-# obtain defaults for required variables according to system and project location, and then run the build.
-SHELL := $(shell which bash)
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-
-include ${PROJ_ROOT}/Makefile.system
-
-modName = $(shell basename `pwd | sed s/tests//g`)
-checks = $(wildcard *.sh)
-
-EXTERNAL_INCLUDES = -I${INC_DIR}/${PROJECT}
-
-XMLS_TARGET_DIR = ${EXAMPLES_DIR}/${modName}/tests
-XMLS = $(wildcard *.xml)
-
-EXTERNAL_INCLUDES =
-EXTERNAL_LIBS =
-packages = STGFEM PETSC STGDOMAIN STGERMAIN MPI XML MATH DL
-
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 Apps/PIC_Components/makefile
--- a/Apps/PIC_Components/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,54 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 277 2006-04-11 11:28:01Z PatrickSunter $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-SHELL := $(shell which bash)
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-
-include ${PROJ_ROOT}/Makefile.system
-
-XMLS_TARGET_DIR = ${EXPORT_INCLUDE_DIR}
-XMLS = $(wildcard *.xml)
-
-# obtain defaults for required variables according to system and project location, and then run the build.
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 Apps/RayleighTaylor/makefile
--- a/Apps/RayleighTaylor/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,74 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 518 2007-10-11 08:07:50Z SteveQuenette $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-SHELL := $(shell which bash)
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-
-include ${PROJ_ROOT}/Makefile.system
-
-subdirs = tests
-
-modName := $(shell basename `pwd` )
-mod = ${PROJECT}_${modName}
-includes = ${PROJECT}/${modName}
-
-SRCS = $(wildcard *.c)
-HDRS = $(wildcard *.h)
-
-XMLS_TARGET_DIR = ${EXAMPLES_DIR}/${modName}
-XMLS = $(wildcard *.xml)
-
-PROJ_LIBS = lib${PROJECT}Update.so lib${PROJECT}Materials.so
-EXTERNAL_INCLUDES =
-EXTERNAL_LIBS =
-packages = STGFEM PETSC STGDOMAIN STGERMAIN MPI XML MATH DL
-
-ifdef HAVE_PYTHON
- packages += PYTHON
-endif
-
-examples_xml = demo.xml
-
-# obtain defaults for required variables according to system and project location, and then run the build.
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 Apps/RayleighTaylor/tests/AnalyticBlock/makefile
--- a/Apps/RayleighTaylor/tests/AnalyticBlock/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,74 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 518 2007-10-11 08:07:50Z SteveQuenette $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-#Finds the Absolute path to the Project Root directory
-SHELL := /bin/bash
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-include ${PROJ_ROOT}/Makefile.system
-
-# Subdirectories
-subdirs := $(shell find * -type d -prune ! -name .svn )
-
-# Source Code and Header files
-SRCS := $(wildcard *.c)
-HDRS := $(wildcard *.h)
-
-# What to call the plugin
-modName := $(shell basename `pwd`)
-mod = ${PROJECT}_${modName}
-
-# Where to put header files
-includes = ${PROJECT}/${modName}
-
-# External Libraries and Headers
-EXTERNAL_INCLUDES =
-EXTERNAL_LIBS =
-packages = STGFEM PETSC STGDOMAIN STGERMAIN MPI XML MATH DL
-
-
-ifdef HAVE_PYTHON
- packages += PYTHON
-endif
-
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 Apps/RayleighTaylor/tests/AnalyticColumn/makefile
--- a/Apps/RayleighTaylor/tests/AnalyticColumn/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,73 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 518 2007-10-11 08:07:50Z SteveQuenette $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-#Finds the Absolute path to the Project Root directory
-SHELL := /bin/bash
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-include ${PROJ_ROOT}/Makefile.system
-
-# Subdirectories
-subdirs := $(shell find * -type d -prune ! -name .svn )
-
-# Source Code and Header files
-SRCS := $(wildcard *.c)
-HDRS := $(wildcard *.h)
-
-# What to call the plugin
-modName := $(shell basename `pwd`)
-mod = ${PROJECT}_${modName}
-
-# Where to put header files
-includes = ${PROJECT}/${modName}
-
-# External Libraries and Headers
-EXTERNAL_INCLUDES =
-EXTERNAL_LIBS =
-packages = STGFEM PETSC STGDOMAIN STGERMAIN MPI XML MATH DL
-
-ifdef HAVE_PYTHON
- packages += PYTHON
-endif
-
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 Apps/RayleighTaylor/tests/makefile
--- a/Apps/RayleighTaylor/tests/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,79 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 518 2007-10-11 08:07:50Z SteveQuenette $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-# obtain defaults for required variables according to system and project location, and then run the build.
-SHELL := $(shell which bash)
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-
-include ${PROJ_ROOT}/Makefile.system
-
-subdirs = #AnalyticColumn AnalyticBlock
-
-modName = $(shell basename `pwd | sed s/tests//g`)
-
-checks = \
- testRayTay3D.0of1.sh \
- testRayTaySuperimposedBall2D.0of1.sh \
- testRayTaySuperimposedBall2D-invert.0of1.sh
- # testAnalyticBlock.0of1.sh \
- testAnalyticBlock.0of2.sh \
- testAnalyticColumn.0of1.sh \
- testAnalyticColumn.0of2.sh \
- testAnalyticColumn3D.0of1.sh \
-
-ifeq (${MACHINE},i686)
- # i686 archs have weaker floating point calculations
- checks += testRayTay2D-i686.0of1.sh
-else
- checks += testRayTay2D.0of1.sh
-endif
-
-XMLS_TARGET_DIR = ${EXAMPLES_DIR}/${modName}/tests
-XMLS = $(wildcard *.xml)
-
-EXTERNAL_INCLUDES = -I${INC_DIR}/${PROJECT}
-EXTERNAL_LIBS =
-packages = STGFEM PETSC STGDOMAIN STGERMAIN MPI XML MATH DL
-
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 Apps/ThermoChem/Makefile.def
--- a/Apps/ThermoChem/Makefile.def Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,20 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Victorian Partnership for Advanced Computing (VPAC) Ltd, Australia
-## (C) 2003 All Rights Reserved
-##
-## <copyright-release-tag>
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-def_sub = # tests
-
-modName := $(shell basename `pwd` )
-modName := $(shell echo ${modName} | cut -c 1 | tr '[:lower:]' '[:upper:]' )$(shell echo ${modName} | cut -c 2- )
-
-def_mod = ${PROJECT}_${modName}
-def_inc = ${PROJECT}/${modName}
-
-def_srcs = $(wildcard *.c)
-
-def_hdrs = $(wildcard *.h)
diff -r 8a7e07972acf -r 537d139cf964 Apps/ThermoChem/makefile
--- a/Apps/ThermoChem/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,76 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 518 2007-10-11 08:07:50Z SteveQuenette $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-SHELL := $(shell which bash)
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-
-include ${PROJ_ROOT}/Makefile.system
-include Makefile.def
-
-subdirs = ${def_sub}
-
-modName := $(shell basename `pwd` )
-mod = ${def_mod}
-includes = ${def_inc}
-
-SRCS = ${def_srcs}
-HDRS = ${def_hdrs}
-
-XMLS_TARGET_DIR = ${EXAMPLES_DIR}/${modName}
-XMLS = ${wildcard *.xml}
-
-PROJ_LIBS = lib${PROJECT}Update.so lib${PROJECT}Materials.so
-EXTERNAL_INCLUDES =
-EXTERNAL_LIBS =
-packages = STGFEM PETSC STGDOMAIN STGERMAIN MPI XML MATH DL
-
-
-ifdef HAVE_PYTHON
- packages += PYTHON
-endif
-
-examples_xml = demo.xml
-
-# obtain defaults for required variables according to system and project location, and then run the build.
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 Apps/makefile
--- a/Apps/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,51 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 409 2007-01-17 13:01:26Z SteveQuenette $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-# obtain defaults for required variables according to system and project location, and then run the build.
-PROJ_ROOT = ..
-include ${PROJ_ROOT}/Makefile.system
-
-subdirs = src BuoyancyBenchmark LidDrivenPIC RayleighTaylor ThermoChem
-
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 MaterialPoints/makefile
--- a/MaterialPoints/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,53 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 482 2007-06-28 05:31:25Z PatrickSunter $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-#Finds the Absolute path to the Project Root directory
-SHELL := /bin/bash
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-include ${PROJ_ROOT}/Makefile.system
-
-# Subdirectories
-subdirs := src tests
-
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 MaterialPoints/src/makefile
--- a/MaterialPoints/src/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,67 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 518 2007-10-11 08:07:50Z SteveQuenette $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-#Finds the Absolute path to the Project Root directory
-SHELL := /bin/bash
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-include ${PROJ_ROOT}/Makefile.system
-
-# Source Code and Header files
-SRCS := $(wildcard *.c)
-HDRS := $(wildcard *.h)
-
-# External Libraries and Headers
-EXTERNAL_INCLUDES =
-EXTERNAL_LIBS =
-packages = STGFEM PETSC STGDOMAIN STGERMAIN MPI XML MATH DL
-
-# Work out name to call library
-lib = ${PROJECT}$(shell basename `pwd | sed s/src//g`)
-libdynamic = yes
-libstatic = yes
-
-# Name of directory to place header files
-includes := ${PROJECT}/$(shell basename `pwd | sed s/src//g`)
-
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 MaterialPoints/tests/makefile
--- a/MaterialPoints/tests/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,63 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 518 2007-10-11 08:07:50Z SteveQuenette $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-#Finds the Absolute path to the Project Root directory
-SHELL := /bin/bash
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-include ${PROJ_ROOT}/Makefile.system
-
-# External Libraries and Headers
-EXTERNAL_INCLUDES = -I${INC_DIR}/${PROJECT} -DLIB_DIR=\"${LIB_DIR}\"
-EXTERNAL_LIBS = ${RPATH_LFLAGS} -L${LIB_DIR} -l${PROJECT}MaterialPoints -l${PROJECT}Weights -l${PROJECT}Voronoi -l${PROJECT}PopulationControl
-packages = STGFEM PETSC STGDOMAIN STGERMAIN MPI XML MATH DL
-
-# Subdirectories
-subdirs := plugins
-
-tests = lib${PROJECT}_MaterialPoints
-SRCS = $(wildcard *.c)
-
-checks = $(wildcard *.sh)
-
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 MaterialPoints/tests/plugins/makefile
--- a/MaterialPoints/tests/plugins/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,60 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 518 2007-10-11 08:07:50Z SteveQuenette $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-#Finds the Absolute path to the Project Root directory
-SHELL := /bin/bash
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-include ${PROJ_ROOT}/Makefile.system
-
-# External Libraries and Headers
-EXTERNAL_INCLUDES =
-EXTERNAL_LIBS =
-packages = STGFEM PETSC STGDOMAIN STGERMAIN MPI XML MATH DL
-
-
-# Note don't put the .c extension. just the base name of the plugin
-plugins := testAdvection testMaterialFeVariable
-
-include ${PROJ_ROOT}/Makefile.vmake
-
diff -r 8a7e07972acf -r 537d139cf964 PopulationControl/makefile
--- a/PopulationControl/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,53 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 277 2006-04-11 11:28:01Z PatrickSunter $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-#Finds the Absolute path to the Project Root directory
-SHELL := /bin/bash
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-include ${PROJ_ROOT}/Makefile.system
-
-# Subdirectories
-subdirs := src tests
-
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 PopulationControl/src/makefile
--- a/PopulationControl/src/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,67 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 518 2007-10-11 08:07:50Z SteveQuenette $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-#Finds the Absolute path to the Project Root directory
-SHELL := /bin/bash
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-include ${PROJ_ROOT}/Makefile.system
-
-# Source Code and Header files
-SRCS := $(wildcard *.c)
-HDRS := $(wildcard *.h)
-
-# External Libraries and Headers
-EXTERNAL_INCLUDES =
-EXTERNAL_LIBS =
-packages = STGFEM PETSC STGDOMAIN STGERMAIN MPI XML MATH DL
-
-# Work out name to call library
-lib = ${PROJECT}$(shell basename `pwd | sed s/src//g`)
-libstatic = yes
-libdynamic = yes
-
-# Name of directory to place header files
-includes := ${PROJECT}/$(shell basename `pwd | sed s/src//g`)
-
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 PopulationControl/tests/makefile
--- a/PopulationControl/tests/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,55 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 277 2006-04-11 11:28:01Z PatrickSunter $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-#Finds the Absolute path to the Project Root directory
-SHELL := /bin/bash
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-include ${PROJ_ROOT}/Makefile.system
-
-# Subdirectories
-subdirs := plugins
-
-checks = $(wildcard *.sh)
-
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 PopulationControl/tests/plugins/makefile
--- a/PopulationControl/tests/plugins/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,59 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 518 2007-10-11 08:07:50Z SteveQuenette $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-#Finds the Absolute path to the Project Root directory
-SHELL := /bin/bash
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-include ${PROJ_ROOT}/Makefile.system
-
-# External Libraries and Headers
-EXTERNAL_INCLUDES =
-EXTERNAL_LIBS =
-packages = STGFEM PETSC STGDOMAIN STGERMAIN MPI XML MATH DL
-
-# Note don't put the .c extension. just the base name of the plugin
-plugins := $(wildcard *.c)
-
-include ${PROJ_ROOT}/Makefile.vmake
-
diff -r 8a7e07972acf -r 537d139cf964 Utils/makefile
--- a/Utils/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,53 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 484 2007-06-28 05:57:43Z PatrickSunter $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-#Finds the Absolute path to the Project Root directory
-SHELL := /bin/bash
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-include ${PROJ_ROOT}/Makefile.system
-
-# Subdirectories
-subdirs := src tests
-
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 Utils/src/makefile
--- a/Utils/src/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,67 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 518 2007-10-11 08:07:50Z SteveQuenette $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-#Finds the Absolute path to the Project Root directory
-SHELL := /bin/bash
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-include ${PROJ_ROOT}/Makefile.system
-
-# Source Code and Header files
-SRCS := $(wildcard *.c)
-HDRS := $(wildcard *.h)
-
-# External Libraries and Headers
-EXTERNAL_INCLUDES =
-EXTERNAL_LIBS =
-packages = STGFEM PETSC STGDOMAIN STGERMAIN MPI XML MATH DL
-
-# Work out name to call library
-lib = ${PROJECT}$(shell basename `pwd | sed s/src//g`)
-libdynamic = yes
-libstatic = yes
-
-# Name of directory to place header files
-includes := ${PROJECT}/$(shell basename `pwd | sed s/src//g`)
-
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 Utils/tests/makefile
--- a/Utils/tests/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,61 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 422 2007-02-12 04:15:13Z KathleenHumble $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-#Finds the Absolute path to the Project Root directory
-SHELL := /bin/bash
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-include ${PROJ_ROOT}/Makefile.system
-
-
-# External Libraries and Headers
-EXTERNAL_INCLUDES =
-EXTERNAL_LIBS =
-packages = STGFEM PETSC STGDOMAIN STGERMAIN MPI XML MATH DL
-
-
-checks = $(wildcard *.sh)
-
-tests = libPICelleratorUtils
-
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 Voronoi/makefile
--- a/Voronoi/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,53 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 277 2006-04-11 11:28:01Z PatrickSunter $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-#Finds the Absolute path to the Project Root directory
-SHELL := /bin/bash
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-include ${PROJ_ROOT}/Makefile.system
-
-# Subdirectories
-subdirs := src tests
-
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 Voronoi/src/makefile
--- a/Voronoi/src/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,67 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 518 2007-10-11 08:07:50Z SteveQuenette $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-#Finds the Absolute path to the Project Root directory
-SHELL := /bin/bash
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-include ${PROJ_ROOT}/Makefile.system
-
-# Source Code and Header files
-SRCS := $(wildcard *.c)
-HDRS := $(wildcard *.h)
-
-# External Libraries and Headers
-EXTERNAL_INCLUDES =
-EXTERNAL_LIBS =
-packages = STGFEM PETSC STGDOMAIN STGERMAIN MPI XML MATH DL
-
-# Work out name to call library
-lib = ${PROJECT}$(shell basename `pwd | sed s/src//g`)
-libstatic = yes
-libdynamic = yes
-
-# Name of directory to place header files
-includes := ${PROJECT}/$(shell basename `pwd | sed s/src//g`)
-
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 Voronoi/tests/makefile
--- a/Voronoi/tests/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,55 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 277 2006-04-11 11:28:01Z PatrickSunter $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-#Finds the Absolute path to the Project Root directory
-SHELL := /bin/bash
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-include ${PROJ_ROOT}/Makefile.system
-
-# Subdirectories
-subdirs := plugins
-
-checks = $(wildcard *.sh)
-
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 Voronoi/tests/plugins/makefile
--- a/Voronoi/tests/plugins/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,59 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 518 2007-10-11 08:07:50Z SteveQuenette $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-#Finds the Absolute path to the Project Root directory
-SHELL := /bin/bash
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-include ${PROJ_ROOT}/Makefile.system
-
-# External Libraries and Headers
-EXTERNAL_INCLUDES =
-EXTERNAL_LIBS =
-packages = STGFEM PETSC STGDOMAIN STGERMAIN MPI XML MATH DL
-
-# Note don't put the .c extension. just the base name of the plugin
-plugins := testDiscreteVoronoi
-
-include ${PROJ_ROOT}/Makefile.vmake
-
diff -r 8a7e07972acf -r 537d139cf964 Weights/makefile
--- a/Weights/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,53 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 277 2006-04-11 11:28:01Z PatrickSunter $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-#Finds the Absolute path to the Project Root directory
-SHELL := /bin/bash
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-include ${PROJ_ROOT}/Makefile.system
-
-# Subdirectories
-subdirs := src tests
-
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 Weights/src/makefile
--- a/Weights/src/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,67 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 518 2007-10-11 08:07:50Z SteveQuenette $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-#Finds the Absolute path to the Project Root directory
-SHELL := /bin/bash
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-include ${PROJ_ROOT}/Makefile.system
-
-# Source Code and Header files
-SRCS := $(wildcard *.c)
-HDRS := $(wildcard *.h)
-
-# External Libraries and Headers
-EXTERNAL_INCLUDES =
-EXTERNAL_LIBS =
-packages = STGFEM PETSC STGDOMAIN STGERMAIN MPI XML MATH DL
-
-# Work out name to call library
-lib = ${PROJECT}$(shell basename `pwd | sed s/src//g`)
-libstatic = yes
-libdynamic = yes
-
-# Name of directory to place header files
-includes := ${PROJECT}/$(shell basename `pwd | sed s/src//g`)
-
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 Weights/tests/makefile
--- a/Weights/tests/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,70 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 518 2007-10-11 08:07:50Z SteveQuenette $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-#Finds the Absolute path to the Project Root directory
-SHELL := /bin/bash
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-include ${PROJ_ROOT}/Makefile.system
-
-# External Libraries and Headers
-EXTERNAL_INCLUDES = -I${INC_DIR}/${PROJECT}
-EXTERNAL_LIBS = ${RPATH_LFLAGS} -L${LIB_DIR} -l${PROJECT}Weights -l${PROJECT}Voronoi -l${PROJECT}PopulationControl
-packages = STGFEM PETSC STGDOMAIN STGERMAIN MPI XML MATH DL
-
-# Subdirectories
-subdirs := plugins
-
-checks = $(wildcard *.sh)
-
-def_tst = libPICelleratorWeights
-
-tests = ${def_tst}
-
-def_srcs = testDVCWeights.c
-
-SRCS = ${def_srcs}
-
-
-
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 Weights/tests/plugins/makefile
--- a/Weights/tests/plugins/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,59 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 518 2007-10-11 08:07:50Z SteveQuenette $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-#Finds the Absolute path to the Project Root directory
-SHELL := /bin/bash
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-include ${PROJ_ROOT}/Makefile.system
-
-# External Libraries and Headers
-EXTERNAL_INCLUDES =
-EXTERNAL_LIBS =
-packages = STGFEM PETSC STGDOMAIN STGERMAIN MPI XML MATH DL
-
-# Note don't put the .c extension. just the base name of the plugin
-plugins := testElementIntegral
-
-include ${PROJ_ROOT}/Makefile.vmake
-
diff -r 8a7e07972acf -r 537d139cf964 doc/Makefile.def
--- a/doc/Makefile.def Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,24 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street, Melbourne, 3053, Australia.
-##
-## Authors:
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## Patrick D. Sunter, Software Engineer, VPAC. (pds at vpac.org)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Siew-Ching Tan, Software Engineer, VPAC. (siew at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-##
-## This file may be distributed under the terms of the VPAC Public License
-## as defined by VPAC of Australia and appearing in the file
-## LICENSE.VPL included in the packaging of this file.
-##
-## This file is provided AS IS with NO WARRANTY OF ANY KIND, INCLUDING THE
-## WARRANTY OF DESIGN, MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.
-##
-## $Id: Makefile.def 2338 2004-11-19 04:51:11Z SteveQuenette $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-def_doxinputs = C_full.doxyconf.in
diff -r 8a7e07972acf -r 537d139cf964 doc/makefile
--- a/doc/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,57 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 277 2006-04-11 11:28:01Z PatrickSunter $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-# obtain defaults for required variables according to system and project location, and then run the build.
-ifndef PROJ_ROOT
- PROJ_ROOT=..
-endif
-include ${PROJ_ROOT}/Makefile.system
-
-# test that Doxygen is installed and working
-
-
-include Makefile.def
-DOXINPUTS = ${def_doxinputs}
-
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 libPICellerator/Makefile.def
--- a/libPICellerator/Makefile.def Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,10 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Victorian Partnership for Advanced Computing (VPAC) Ltd, Australia
-## (C) 2003 All Rights Reserved
-##
-## <copyright-release-tag>
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-def_sub = src tests Toolbox
diff -r 8a7e07972acf -r 537d139cf964 libPICellerator/Toolbox/makefile
--- a/libPICellerator/Toolbox/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,60 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-## Computational Infrastructure for Geodynamics - http://www.geodynamics.org
-##
-## Contributors:
-## Patrick D. Sunter, Software Engineer, VPAC. (pds at vpac.org)
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 535 2006-04-11 13:07:34Z PatrickSunter $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-SHELL := $(shell which bash)
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-
-include ${PROJ_ROOT}/Makefile.system
-
-modName := $(shell basename `pwd` )
-modName := $(shell echo ${modName} | cut -c 1 | tr '[:lower:]' '[:upper:]' )$(shell echo ${modName} | cut -c 2- )
-
-mod = ${PROJECT}_${modName}
-includes = ${PROJECT}/${modName}
-
-SRCS = $(wildcard *.c)
-HDRS = $(wildcard *.h)
-
-EXTERNAL_INCLUDES =
-EXTERNAL_LIBS = -lPICellerator
-packages = STGFEM PETSC STGDOMAIN STGERMAIN MPI XML MATH DL
-
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 libPICellerator/makefile
--- a/libPICellerator/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,55 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 277 2006-04-11 11:28:01Z PatrickSunter $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-# obtain defaults for required variables according to system and project location, and then run the build.
-ifndef PROJ_ROOT
- PROJ_ROOT=..
-endif
-include ${PROJ_ROOT}/Makefile.system
-
-include Makefile.def
-
-subdirs = ${def_sub}
-
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 libPICellerator/src/makefile
--- a/libPICellerator/src/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,69 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 518 2007-10-11 08:07:50Z SteveQuenette $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-# obtain defaults for required variables according to system and project location, and then run the build.
-ifndef PROJ_ROOT
- PROJ_ROOT=../..
-endif
-include ${PROJ_ROOT}/Makefile.system
-
-lib = ${PROJECT}
-libstatic = yes
-libdynamic = yes
-includes = ${PROJECT}
-
-SRCS = \
- Init.c \
- Finalise.c
-
-HDRS = Init.h \
- Finalise.h \
- PICellerator.h \
-
-PROJ_OBJLISTS = PICelleratorVoronoi PICelleratorPopulationControl PICelleratorWeights PICelleratorMaterialPoints PICelleratorUtils
-EXTERNAL_INCLUDES = -I${INC_DIR}/${PROJECT} -DLIB_DIR=\"${LIB_DIR}\"
-EXTERNAL_LIBS = -L${LIB_DIR}
-packages = STGFEM PETSC STGDOMAIN STGERMAIN MPI XML MATH DL
-
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 libPICellerator/tests/makefile
--- a/libPICellerator/tests/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,60 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 422 2007-02-12 04:15:13Z KathleenHumble $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-SHELL := /bin/bash
-# obtain defaults for required variables according to system and project location, and then run the build.
-ifndef PROJ_ROOT
- PROJ_ROOT=../..
-endif
-include ${PROJ_ROOT}/Makefile.system
-
-tests = lib${PROJECT}
-
-checks = $(wildcard *.sh)
-
-SRCS = $(wildcard *.c)
-EXTERNAL_INCLUDES = -I${INC_DIR}/${PROJECT} -DLIB_DIR=\"${LIB_DIR}\"
-EXTERNAL_LIBS = ${RPATH_LFLAGS} -L${LIB_DIR} -l${PROJECT}
-packages = STGFEM PETSC STGDOMAIN STGERMAIN MPI XML MATH DL
-
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 makefile
--- a/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,58 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 504 2007-08-05 09:48:58Z SteveQuenette $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-# obtain defaults for required variables according to system and project location, and then run the build.
-override PROJ_ROOT=.
-include ${PROJ_ROOT}/Makefile.system
-
-subdirs = Voronoi PopulationControl Weights MaterialPoints Utils libPICellerator plugins Apps
-
-ifeq (true,$(shell if test -x $(DOXYGEN); then echo true; fi ))
- subdirs += doc
-else
- warn := $(shell echo Not entering doc directory as doxygen not found. 1>&2 )
- warn := $(shell echo To generate doxgen docs, please set the DOXYGEN environment variable then re-run configure.sh. 1>&2 )
-endif
-
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 plugins/CalculateParticleDisplacement/makefile
--- a/plugins/CalculateParticleDisplacement/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,75 +0,0 @@
-
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 277 2006-04-11 11:28:01Z PatrickSunter $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-#Finds the Absolute path to the Project Root directory
-SHELL := /bin/bash
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-include ${PROJ_ROOT}/Makefile.system
-
-# Subdirectories
-subdirs := $(shell find * -type d -prune ! -name .svn )
-
-# Source Code and Header files
-SRCS := $(wildcard *.c)
-HDRS := $(wildcard *.h)
-
-# What to call the plugin
-modName := $(shell basename `pwd`)
-mod = ${PROJECT}_${modName}
-
-# Where to put header files
-includes = ${PROJECT}/${modName}
-
-# External Libraries and Headers
-EXTERNAL_INCLUDES =
-EXTERNAL_LIBS =
-packages = STGFEM PETSC STGDOMAIN STGERMAIN MPI XML MATH DL
-
-ifdef HAVE_PYTHON
- packages += PYTHON
-endif
-
-
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 plugins/Output/MaterialCentroid/makefile
--- a/plugins/Output/MaterialCentroid/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,74 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 518 2007-10-11 08:07:50Z SteveQuenette $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-#Finds the Absolute path to the Project Root directory
-SHELL := /bin/bash
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-include ${PROJ_ROOT}/Makefile.system
-
-# Subdirectories
-subdirs := $(shell find * -type d -prune ! -name .svn )
-
-# Source Code and Header files
-SRCS := $(wildcard *.c)
-HDRS := $(wildcard *.h)
-
-# What to call the plugin
-modName := $(shell basename `pwd`)
-mod = ${PROJECT}_${modName}
-
-# Where to put header files
-includes = ${PROJECT}/${modName}
-
-# External Libraries and Headers
-EXTERNAL_INCLUDES =
-EXTERNAL_LIBS =
-packages = STGFEM PETSC STGDOMAIN STGERMAIN MPI XML MATH DL
-
-ifdef HAVE_PYTHON
- packages += PYTHON
-endif
-
-
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 plugins/Output/makefile
--- a/plugins/Output/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,53 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-## Copyright (c) 2005-2006, Monash Cluster Computing, Building 28, Monash University Clayton Campus,
-## Victoria, 3800, Australia
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-##
-## Contributors:
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Patrick D. Sunter, Software Engineer, VPAC. (patrick at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## David Stegman, Postdoctoral Fellow, Monash University. (david.stegman at sci.monash.edu.au)
-## Wendy Sharples, PhD Student, Monash University (wendy.sharples at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 277 2006-04-11 11:28:01Z PatrickSunter $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-#Finds the Absolute path to the Project Root directory
-SHELL := /bin/bash
-PROJ_ROOT := $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-include ${PROJ_ROOT}/Makefile.system
-
-# Subdirectories
-subdirs := $(shell find * -type d -follow -prune ! -name .svn )
-
-include ${PROJ_ROOT}/Makefile.vmake
diff -r 8a7e07972acf -r 537d139cf964 plugins/makefile
--- a/plugins/makefile Thu Oct 16 13:30:48 2008 +1100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,51 +0,0 @@
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-##
-## Copyright (C), 2003-2006, Victorian Partnership for Advanced Computing (VPAC) Ltd, 110 Victoria Street,
-## Melbourne, 3053, Australia.
-##
-## Primary Contributing Organisations:
-## Victorian Partnership for Advanced Computing Ltd, Computational Software Development - http://csd.vpac.org
-## Australian Computational Earth Systems Simulator - http://www.access.edu.au
-## Monash Cluster Computing - http://www.mcc.monash.edu.au
-## Computational Infrastructure for Geodynamics - http://www.geodynamics.org
-##
-## Contributors:
-## Patrick D. Sunter, Software Engineer, VPAC. (pds at vpac.org)
-## Robert Turnbull, Research Assistant, Monash University. (robert.turnbull at sci.monash.edu.au)
-## Stevan M. Quenette, Senior Software Engineer, VPAC. (steve at vpac.org)
-## David May, PhD Student, Monash University (david.may at sci.monash.edu.au)
-## Louis Moresi, Associate Professor, Monash University. (louis.moresi at sci.monash.edu.au)
-## Luke J. Hodkinson, Computational Engineer, VPAC. (lhodkins at vpac.org)
-## Alan H. Lo, Computational Engineer, VPAC. (alan at vpac.org)
-## Raquibul Hassan, Computational Engineer, VPAC. (raq at vpac.org)
-## Julian Giordani, Research Assistant, Monash University. (julian.giordani at sci.monash.edu.au)
-## Vincent Lemiale, Postdoctoral Fellow, Monash University. (vincent.lemiale at sci.monash.edu.au)
-##
-## This library is free software; you can redistribute it and/or
-## modify it under the terms of the GNU Lesser General Public
-## License as published by the Free Software Foundation; either
-## version 2.1 of the License, or (at your option) any later version.
-##
-## This library is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-## Lesser General Public License for more details.
-##
-## You should have received a copy of the GNU Lesser General Public
-## License along with this library; if not, write to the Free Software
-## Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-##
-## $Id: makefile 503 2007-08-02 08:41:48Z SteveQuenette $
-##
-##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-# obtain defaults for required variables according to system and project location, and then run the build.
-SHELL := $(shell which bash)
-PROJ_ROOT:= $(shell until test -r ./Makefile.system ; do cd .. ; done ; echo `pwd`)
-include ${PROJ_ROOT}/Makefile.system
-
-subdirs = \
- Output \
- CalculateParticleDisplacement
-
-include ${PROJ_ROOT}/Makefile.vmake
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