[cig-commits] r14590 - mc/3D/CitcomS/trunk/lib

tan2 at geodynamics.org tan2 at geodynamics.org
Fri Apr 3 17:59:32 PDT 2009


Author: tan2
Date: 2009-04-03 17:59:32 -0700 (Fri, 03 Apr 2009)
New Revision: 14590

Added:
   mc/3D/CitcomS/trunk/lib/Mineral_physics_models.c
Removed:
   mc/3D/CitcomS/trunk/lib/Seismic_model.c
Modified:
   mc/3D/CitcomS/trunk/lib/Makefile.am
Log:
Renamed Seismic_model.c to Mineral_physics_models.c


Modified: mc/3D/CitcomS/trunk/lib/Makefile.am
===================================================================
--- mc/3D/CitcomS/trunk/lib/Makefile.am	2009-04-04 00:57:47 UTC (rev 14589)
+++ mc/3D/CitcomS/trunk/lib/Makefile.am	2009-04-04 00:59:32 UTC (rev 14590)
@@ -88,6 +88,7 @@
 	Lith_age.c \
 	Material_properties.c \
 	material_properties.h \
+	Mineral_physics_models.c \
 	Nodal_mesh.c \
 	Output.c \
 	output.h \
@@ -104,7 +105,6 @@
 	phase_change.h \
 	Problem_related.c \
 	Process_buoyancy.c \
-	Seismic_model.c \
 	Shape_functions.c \
 	Size_does_matter.c \
 	Solver_conj_grad.c \

Copied: mc/3D/CitcomS/trunk/lib/Mineral_physics_models.c (from rev 14589, mc/3D/CitcomS/trunk/lib/Seismic_model.c)
===================================================================
--- mc/3D/CitcomS/trunk/lib/Mineral_physics_models.c	                        (rev 0)
+++ mc/3D/CitcomS/trunk/lib/Mineral_physics_models.c	2009-04-04 00:59:32 UTC (rev 14590)
@@ -0,0 +1,296 @@
+/*
+ *~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ *
+ *<LicenseText>
+ *
+ * CitcomS by Louis Moresi, Shijie Zhong, Lijie Han, Eh Tan,
+ * Clint Conrad, Michael Gurnis, and Eun-seo Choi.
+ * Copyright (C) 1994-2005, California Institute of Technology.
+ *
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 2 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
+ *
+ *</LicenseText>
+ *
+ *~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ */
+
+#include <stdio.h>
+#include "global_defs.h"
+
+
+void compute_horiz_avg(struct All_variables*);
+
+
+/*
+ * Given a radius (non-dimensional),
+ * returns Vp/Vs/rho (in km/s and g/cm^3) of PREM.
+ */
+void get_prem(double r, double *vp, double *vs, double *rho)
+{
+#define NUM_PREM_LAYERS 11
+
+/* some specfem flags */
+#define SUPPRESS_CRUSTAL_MESH 0
+#define ONE_CRUST 1
+
+    /* radius of various layers */
+    const double prem_radius[NUM_PREM_LAYERS] =
+        {0.19164966253335425,  /* 0: ICB */
+         0.54622508240464607,  /* 1: CMB */
+         0.56976926699105324,  /* 2: top of D'' */
+         0.87898289122586726,  /* 3: 771 */
+         0.89483597551404803,  /* 4: 670 */
+         0.90582326165437133,  /* 5: 600 */
+         0.93721550776958096,  /* 6: 400 */
+         0.96546852927326954,  /* 7: 220 */
+         0.99617014597394449,  /* 8: Moho */
+         0.99764558154135929,  /* 9: middle crust */
+         1.00000000000000000}; /*10: top surface */
+
+    const int j_cmb = 1;
+    const int j_moho = 8;
+
+
+    /* polynomial coefficients of PREM */
+    const double prem_vs[NUM_PREM_LAYERS][4] =
+        {{ 3.6678,   0.0000, -4.4475,  0.0000},
+         { 0.0010,   0.0000,  0.0000,  0.0000},
+         { 6.9254,   1.4672, -2.0834,  0.9783},
+         {11.1671, -13.7818, 17.4575, -9.2777},
+         {22.3459, -17.2473, -2.0834,  0.9783},
+         { 9.9839,  -4.9324,  0.0000,  0.0000},
+         {22.3512, -18.5856,  0.0000,  0.0000},
+         { 8.9496,  -4.4597,  0.0000,  0.0000},
+         { 2.1519,   2.3481,  0.0000,  0.0000},
+         { 3.9000,   0.0000,  0.0000,  0.0000},
+         { 3.2000,   0.0000,  0.0000,  0.0000}};
+
+    const double prem_vp[NUM_PREM_LAYERS][4] =
+        {{11.2622,   0.0000, -6.3640,  0.0000},
+         {11.0487,  -4.0362,  4.8023,-13.5732},
+         {15.3891,  -5.3181,  5.5242, -2.5514},
+         {24.9520, -40.4673, 51.4832,-26.6419},
+         {29.2766, -23.6027,  5.5242, -2.5514},
+         {19.0957,  -9.8672,  0.0000,  0.0000},
+         {39.7027, -32.6166,  0.0000,  0.0000},
+         {20.3926, -12.2569,  0.0000,  0.0000},
+         { 4.1875,   3.9382,  0.0000,  0.0000},
+         { 6.8000,   0.0000,  0.0000,  0.0000},
+         { 5.8000,   0.0000,  0.0000,  0.0000}};
+
+    const double  prem_rho[NUM_PREM_LAYERS][4] =
+        {{13.0885,   0.0000, -8.8381,  0.0000},
+         {12.5815,  -1.2638, -3.6426, -5.5281},
+         { 7.9565,  -6.4761,  5.5283, -3.0807},
+         { 7.9565,  -6.4761,  5.5283, -3.0807},
+         { 7.9565,  -6.4761,  5.5283, -3.0807},
+         { 5.3197,  -1.4836,  0.0000,  0.0000},
+         {11.2494,  -8.0298,  0.0000,  0.0000},
+         { 7.1089,  -3.8045,  0.0000,  0.0000},
+         { 2.6910,   0.6924,  0.0000,  0.0000},
+         { 2.9000,   0.0000,  0.0000,  0.0000},
+         { 2.6000,   0.0000,  0.0000,  0.0000}};
+
+
+    int j;
+    double r2, r3;
+
+    /* make sure r is above CMB */
+    r = (r < prem_radius[j_cmb]) ? prem_radius[j_cmb] : r;
+    r2 = r * r;
+    r3 = r2 * r;
+
+    /* find layer */
+    for (j = 0; j < NUM_PREM_LAYERS; ++j)
+        if (r < prem_radius[j]) break;
+
+    if (j < 0) j = 0;
+    if (j >= NUM_PREM_LAYERS) j = NUM_PREM_LAYERS - 1;
+
+    if(SUPPRESS_CRUSTAL_MESH && j > j_moho) {
+        /* extend of Moho up to the surface instead of the crust */
+        j = 8;
+    }
+    if(ONE_CRUST && j > j_moho) {
+        /* replace mid-crust with upper crust */
+        j = 10;
+    }
+
+    /* expand polynomials */
+    *vp = prem_vp[j][0]
+        + prem_vp[j][1] * r
+        + prem_vp[j][2] * r2
+        + prem_vp[j][3] * r3;
+    *vs = prem_vs[j][0]
+        + prem_vs[j][1] * r
+        + prem_vs[j][2] * r2
+        + prem_vs[j][3] * r3;
+    *rho = prem_rho[j][0]
+        + prem_rho[j][1] * r
+        + prem_rho[j][2] * r2
+        + prem_rho[j][3] * r3;
+
+    /** debug **
+    fprintf(stderr, "%e %d %f %f %f\n", r, j, *rho, *vp, *vs);
+    /**/
+
+#undef NUM_PREM_LAYERS
+#undef SUPPRESS_CRUSTAL_MESH
+#undef ONE_CRUST
+
+    return;
+}
+
+
+
+static void modified_Trampert_Vacher_Vlaar_PEPI2001(struct All_variables *E,
+                                                    double *rho, double *vp, double *vs)
+{
+
+    /* Table 2 in the paper, including quasi-harmonic and anelastic parts */
+    const double dlnvpdt[3] = {-5.71e-5, 2.44e-8, -3.84e-12};
+    const double dlnvsdt[3] = {-9.37e-5, 3.70e-8, -5.46e-12};
+    const double dlnvpdc[3] = {1.72e-1, -0.98e-4, 1.44e-8};
+    const double dlnvsdc[3] = {1.50e-1, -1.43e-4, 1.92e-8};
+
+    const int m = 1;
+    int i, j, nz;
+    double *rhor, *vpr, *vsr, *depthkm;
+    double d, d2, dT, dC, drho, dvp, dvs;
+
+    /* compute horizontal average, if not done yet */
+    if(!E->output.horiz_avg)
+        compute_horiz_avg(E);
+
+
+    /* reference model (PREM) */
+    rhor = malloc((E->lmesh.noz+1) * sizeof(double));
+    vpr = malloc((E->lmesh.noz+1) * sizeof(double));
+    vsr = malloc((E->lmesh.noz+1) * sizeof(double));
+    depthkm = malloc((E->lmesh.noz+1) * sizeof(double));
+
+    for(nz=1; nz<=E->lmesh.noz; nz++) {
+        get_prem(E->sx[m][3][nz], &vpr[nz], &vsr[nz], &rhor[nz]);
+        depthkm[nz] = (E->sphere.ro - E->sx[m][3][nz]) * E->data.radius_km;
+    }
+
+    /* deviation from the reference */
+    dC = 0;
+    for(i=0; i<E->lmesh.nno; i++) {
+        nz = (i % E->lmesh.noz) + 1;
+
+        d = depthkm[nz];
+        d2 = d * d;
+        dT = (E->T[m][i+1] - E->Have.T[nz]) * E->data.ref_temperature;
+
+        drho = -dT * E->refstate.thermal_expansivity[nz] * E->data.therm_exp;
+
+        dvp = dT * (dlnvpdt[0] + dlnvpdt[1]*d + dlnvpdt[2]*d2);
+        dvs = dT * (dlnvsdt[0] + dlnvsdt[1]*d + dlnvsdt[2]*d2);
+
+        if(E->control.tracer && E->composition.on && E->composition.ichemical_buoyancy)
+            for(j=0; j<E->composition.ncomp; j++) {
+                dC = E->composition.comp_node[m][j][i+1] - E->Have.C[j][nz];
+
+                drho += dC * E->composition.buoyancy_ratio[j]
+                    * E->data.ref_temperature * E->data.therm_exp / E->refstate.rho[nz];
+
+                dvp += dC * (dlnvpdc[0] + dlnvpdc[1]*d + dlnvpdc[2]*d2);
+                dvs += dC * (dlnvsdc[0] + dlnvsdc[1]*d + dlnvsdc[2]*d2);
+            }
+
+        rho[i] = rhor[nz] * (1 + drho);
+        vp[i] = vpr[nz] * (1 + dvp);
+        vs[i] = vsr[nz] * (1 + dvs);
+
+        /** debug **
+        fprintf(stderr, "node=%d dT=%f K, dC=%f, %e %e %e\n",
+                i, dT, dC, drho, dvp, dvs);
+        /**/
+    }
+
+
+    free(rhor);
+    free(vpr);
+    free(vsr);
+    free(depthkm);
+
+    return;
+}
+
+
+
+void compute_seismic_model(struct All_variables *E,
+                           double *rho, double *vp, double *vs)
+{
+
+    switch(E->control.mineral_physics_model) {
+
+    case 0:
+        /* reserved for Stixrude and Lithgow-Bertelloni, GJI, 2005 model */
+        fprintf(stderr,"Invalid value: 'mineral_physics_model=%d'\n",
+                E->control.mineral_physics_model);
+        parallel_process_termination();
+
+        break;
+
+    case 1:
+        /* reserved for Karato, GRL, 1993 model */
+        fprintf(stderr,"Invalid value: 'mineral_physics_model=%d'\n",
+                E->control.mineral_physics_model);
+        parallel_process_termination();
+
+        break;
+
+    case 2:
+        /* reserved for Stacy, PEPI, 1998 model */
+        fprintf(stderr,"Invalid value: 'mineral_physics_model=%d'\n",
+                E->control.mineral_physics_model);
+        parallel_process_termination();
+
+        break;
+
+    case 3:
+        /* Based on the paper:
+         * Trampert, Vacher, and Vlaar, PEPI, 2001.
+         *
+         * Note that the paper has its own reference profile (which is not
+         * shown in the paper), and is only valid between
+         * 1000 km < depth < 2600 km.
+         *
+         * But here we use PREM as the reference model, and extend the model to the
+         * whole mantle.
+         */
+
+        modified_Trampert_Vacher_Vlaar_PEPI2001(E, rho, vp, vs);
+        break;
+
+    case 100:
+        /* user-defined initial temperature goes here */
+        fprintf(stderr,"Need user definition for mineral physics model: 'mineral_physics_model=%d'\n",
+                E->control.mineral_physics_model);
+        parallel_process_termination();
+        break;
+
+    default:
+        /* unknown option */
+        fprintf(stderr,"Invalid value: 'mineral_physics_model=%d'\n",
+                E->control.mineral_physics_model);
+        parallel_process_termination();
+        break;
+    }
+
+    return;
+}


Property changes on: mc/3D/CitcomS/trunk/lib/Mineral_physics_models.c
___________________________________________________________________
Name: svn:mergeinfo
   + 

Deleted: mc/3D/CitcomS/trunk/lib/Seismic_model.c
===================================================================
--- mc/3D/CitcomS/trunk/lib/Seismic_model.c	2009-04-04 00:57:47 UTC (rev 14589)
+++ mc/3D/CitcomS/trunk/lib/Seismic_model.c	2009-04-04 00:59:32 UTC (rev 14590)
@@ -1,296 +0,0 @@
-/*
- *~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- *
- *<LicenseText>
- *
- * CitcomS by Louis Moresi, Shijie Zhong, Lijie Han, Eh Tan,
- * Clint Conrad, Michael Gurnis, and Eun-seo Choi.
- * Copyright (C) 1994-2005, California Institute of Technology.
- *
- * This program is free software; you can redistribute it and/or modify
- * it under the terms of the GNU General Public License as published by
- * the Free Software Foundation; either version 2 of the License, or
- * (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
- *
- *</LicenseText>
- *
- *~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- */
-
-#include <stdio.h>
-#include "global_defs.h"
-
-
-void compute_horiz_avg(struct All_variables*);
-
-
-/*
- * Given a radius (non-dimensional),
- * returns Vp/Vs/rho (in km/s and g/cm^3) of PREM.
- */
-void get_prem(double r, double *vp, double *vs, double *rho)
-{
-#define NUM_PREM_LAYERS 11
-
-/* some specfem flags */
-#define SUPPRESS_CRUSTAL_MESH 0
-#define ONE_CRUST 1
-
-    /* radius of various layers */
-    const double prem_radius[NUM_PREM_LAYERS] =
-        {0.19164966253335425,  /* 0: ICB */
-         0.54622508240464607,  /* 1: CMB */
-         0.56976926699105324,  /* 2: top of D'' */
-         0.87898289122586726,  /* 3: 771 */
-         0.89483597551404803,  /* 4: 670 */
-         0.90582326165437133,  /* 5: 600 */
-         0.93721550776958096,  /* 6: 400 */
-         0.96546852927326954,  /* 7: 220 */
-         0.99617014597394449,  /* 8: Moho */
-         0.99764558154135929,  /* 9: middle crust */
-         1.00000000000000000}; /*10: top surface */
-
-    const int j_cmb = 1;
-    const int j_moho = 8;
-
-
-    /* polynomial coefficients of PREM */
-    const double prem_vs[NUM_PREM_LAYERS][4] =
-        {{ 3.6678,   0.0000, -4.4475,  0.0000},
-         { 0.0010,   0.0000,  0.0000,  0.0000},
-         { 6.9254,   1.4672, -2.0834,  0.9783},
-         {11.1671, -13.7818, 17.4575, -9.2777},
-         {22.3459, -17.2473, -2.0834,  0.9783},
-         { 9.9839,  -4.9324,  0.0000,  0.0000},
-         {22.3512, -18.5856,  0.0000,  0.0000},
-         { 8.9496,  -4.4597,  0.0000,  0.0000},
-         { 2.1519,   2.3481,  0.0000,  0.0000},
-         { 3.9000,   0.0000,  0.0000,  0.0000},
-         { 3.2000,   0.0000,  0.0000,  0.0000}};
-
-    const double prem_vp[NUM_PREM_LAYERS][4] =
-        {{11.2622,   0.0000, -6.3640,  0.0000},
-         {11.0487,  -4.0362,  4.8023,-13.5732},
-         {15.3891,  -5.3181,  5.5242, -2.5514},
-         {24.9520, -40.4673, 51.4832,-26.6419},
-         {29.2766, -23.6027,  5.5242, -2.5514},
-         {19.0957,  -9.8672,  0.0000,  0.0000},
-         {39.7027, -32.6166,  0.0000,  0.0000},
-         {20.3926, -12.2569,  0.0000,  0.0000},
-         { 4.1875,   3.9382,  0.0000,  0.0000},
-         { 6.8000,   0.0000,  0.0000,  0.0000},
-         { 5.8000,   0.0000,  0.0000,  0.0000}};
-
-    const double  prem_rho[NUM_PREM_LAYERS][4] =
-        {{13.0885,   0.0000, -8.8381,  0.0000},
-         {12.5815,  -1.2638, -3.6426, -5.5281},
-         { 7.9565,  -6.4761,  5.5283, -3.0807},
-         { 7.9565,  -6.4761,  5.5283, -3.0807},
-         { 7.9565,  -6.4761,  5.5283, -3.0807},
-         { 5.3197,  -1.4836,  0.0000,  0.0000},
-         {11.2494,  -8.0298,  0.0000,  0.0000},
-         { 7.1089,  -3.8045,  0.0000,  0.0000},
-         { 2.6910,   0.6924,  0.0000,  0.0000},
-         { 2.9000,   0.0000,  0.0000,  0.0000},
-         { 2.6000,   0.0000,  0.0000,  0.0000}};
-
-
-    int j;
-    double r2, r3;
-
-    /* make sure r is above CMB */
-    r = (r < prem_radius[j_cmb]) ? prem_radius[j_cmb] : r;
-    r2 = r * r;
-    r3 = r2 * r;
-
-    /* find layer */
-    for (j = 0; j < NUM_PREM_LAYERS; ++j)
-        if (r < prem_radius[j]) break;
-
-    if (j < 0) j = 0;
-    if (j >= NUM_PREM_LAYERS) j = NUM_PREM_LAYERS - 1;
-
-    if(SUPPRESS_CRUSTAL_MESH && j > j_moho) {
-        /* extend of Moho up to the surface instead of the crust */
-        j = 8;
-    }
-    if(ONE_CRUST && j > j_moho) {
-        /* replace mid-crust with upper crust */
-        j = 10;
-    }
-
-    /* expand polynomials */
-    *vp = prem_vp[j][0]
-        + prem_vp[j][1] * r
-        + prem_vp[j][2] * r2
-        + prem_vp[j][3] * r3;
-    *vs = prem_vs[j][0]
-        + prem_vs[j][1] * r
-        + prem_vs[j][2] * r2
-        + prem_vs[j][3] * r3;
-    *rho = prem_rho[j][0]
-        + prem_rho[j][1] * r
-        + prem_rho[j][2] * r2
-        + prem_rho[j][3] * r3;
-
-    /** debug **
-    fprintf(stderr, "%e %d %f %f %f\n", r, j, *rho, *vp, *vs);
-    /**/
-
-#undef NUM_PREM_LAYERS
-#undef SUPPRESS_CRUSTAL_MESH
-#undef ONE_CRUST
-
-    return;
-}
-
-
-
-static void modified_Trampert_Vacher_Vlaar_PEPI2001(struct All_variables *E,
-                                                    double *rho, double *vp, double *vs)
-{
-
-    /* Table 2 in the paper, including quasi-harmonic and anelastic parts */
-    const double dlnvpdt[3] = {-5.71e-5, 2.44e-8, -3.84e-12};
-    const double dlnvsdt[3] = {-9.37e-5, 3.70e-8, -5.46e-12};
-    const double dlnvpdc[3] = {1.72e-1, -0.98e-4, 1.44e-8};
-    const double dlnvsdc[3] = {1.50e-1, -1.43e-4, 1.92e-8};
-
-    const int m = 1;
-    int i, j, nz;
-    double *rhor, *vpr, *vsr, *depthkm;
-    double d, d2, dT, dC, drho, dvp, dvs;
-
-    /* compute horizontal average, if not done yet */
-    if(!E->output.horiz_avg)
-        compute_horiz_avg(E);
-
-
-    /* reference model (PREM) */
-    rhor = malloc((E->lmesh.noz+1) * sizeof(double));
-    vpr = malloc((E->lmesh.noz+1) * sizeof(double));
-    vsr = malloc((E->lmesh.noz+1) * sizeof(double));
-    depthkm = malloc((E->lmesh.noz+1) * sizeof(double));
-
-    for(nz=1; nz<=E->lmesh.noz; nz++) {
-        get_prem(E->sx[m][3][nz], &vpr[nz], &vsr[nz], &rhor[nz]);
-        depthkm[nz] = (E->sphere.ro - E->sx[m][3][nz]) * E->data.radius_km;
-    }
-
-    /* deviation from the reference */
-    dC = 0;
-    for(i=0; i<E->lmesh.nno; i++) {
-        nz = (i % E->lmesh.noz) + 1;
-
-        d = depthkm[nz];
-        d2 = d * d;
-        dT = (E->T[m][i+1] - E->Have.T[nz]) * E->data.ref_temperature;
-
-        drho = -dT * E->refstate.thermal_expansivity[nz] * E->data.therm_exp;
-
-        dvp = dT * (dlnvpdt[0] + dlnvpdt[1]*d + dlnvpdt[2]*d2);
-        dvs = dT * (dlnvsdt[0] + dlnvsdt[1]*d + dlnvsdt[2]*d2);
-
-        if(E->control.tracer && E->composition.on && E->composition.ichemical_buoyancy)
-            for(j=0; j<E->composition.ncomp; j++) {
-                dC = E->composition.comp_node[m][j][i+1] - E->Have.C[j][nz];
-
-                drho += dC * E->composition.buoyancy_ratio[j]
-                    * E->data.ref_temperature * E->data.therm_exp / E->refstate.rho[nz];
-
-                dvp += dC * (dlnvpdc[0] + dlnvpdc[1]*d + dlnvpdc[2]*d2);
-                dvs += dC * (dlnvsdc[0] + dlnvsdc[1]*d + dlnvsdc[2]*d2);
-            }
-
-        rho[i] = rhor[nz] * (1 + drho);
-        vp[i] = vpr[nz] * (1 + dvp);
-        vs[i] = vsr[nz] * (1 + dvs);
-
-        /** debug **
-        fprintf(stderr, "node=%d dT=%f K, dC=%f, %e %e %e\n",
-                i, dT, dC, drho, dvp, dvs);
-        /**/
-    }
-
-
-    free(rhor);
-    free(vpr);
-    free(vsr);
-    free(depthkm);
-
-    return;
-}
-
-
-
-void compute_seismic_model(struct All_variables *E,
-                           double *rho, double *vp, double *vs)
-{
-
-    switch(E->control.mineral_physics_model) {
-
-    case 0:
-        /* reserved for Stixrude and Lithgow-Bertelloni, GJI, 2005 model */
-        fprintf(stderr,"Invalid value: 'mineral_physics_model=%d'\n",
-                E->control.mineral_physics_model);
-        parallel_process_termination();
-
-        break;
-
-    case 1:
-        /* reserved for Karato, GRL, 1993 model */
-        fprintf(stderr,"Invalid value: 'mineral_physics_model=%d'\n",
-                E->control.mineral_physics_model);
-        parallel_process_termination();
-
-        break;
-
-    case 2:
-        /* reserved for Stacy, PEPI, 1998 model */
-        fprintf(stderr,"Invalid value: 'mineral_physics_model=%d'\n",
-                E->control.mineral_physics_model);
-        parallel_process_termination();
-
-        break;
-
-    case 3:
-        /* Based on the paper:
-         * Trampert, Vacher, and Vlaar, PEPI, 2001.
-         *
-         * Note that the paper has its own reference profile (which is not
-         * shown in the paper), and is only valid between
-         * 1000 km < depth < 2600 km.
-         *
-         * But here we use PREM as the reference model, and extend the model to the
-         * whole mantle.
-         */
-
-        modified_Trampert_Vacher_Vlaar_PEPI2001(E, rho, vp, vs);
-        break;
-
-    case 100:
-        /* user-defined initial temperature goes here */
-        fprintf(stderr,"Need user definition for mineral physics model: 'mineral_physics_model=%d'\n",
-                E->control.mineral_physics_model);
-        parallel_process_termination();
-        break;
-
-    default:
-        /* unknown option */
-        fprintf(stderr,"Invalid value: 'mineral_physics_model=%d'\n",
-                E->control.mineral_physics_model);
-        parallel_process_termination();
-        break;
-    }
-
-    return;
-}



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