[cig-commits] r14776 - doc/CitcomS/manual
tan2 at geodynamics.org
tan2 at geodynamics.org
Mon Apr 20 12:54:38 PDT 2009
Author: tan2
Date: 2009-04-20 12:54:38 -0700 (Mon, 20 Apr 2009)
New Revision: 14776
Modified:
doc/CitcomS/manual/citcoms.lyx
Log:
Updated the description of input parameters, esp. new parameters: mineral_physics_model, self_gravitation, use_cbf_topo, remove_angular_momentum, max_mg_cycles; and available schedulers.
Modified: doc/CitcomS/manual/citcoms.lyx
===================================================================
--- doc/CitcomS/manual/citcoms.lyx 2009-04-20 18:27:43 UTC (rev 14775)
+++ doc/CitcomS/manual/citcoms.lyx 2009-04-20 19:54:38 UTC (rev 14776)
@@ -1,4 +1,4 @@
-#LyX 1.5.1 created this file. For more info see http://www.lyx.org/
+#LyX 1.5.5 created this file. For more info see http://www.lyx.org/
\lyxformat 276
\begin_document
\begin_header
@@ -11119,21 +11119,21 @@
.
A tetrahedral symmetric pattern is developed for the convection.
- The surface heatflux
+ The surface heat flux
\begin_inset Formula $H_{surf}$
\end_inset
- at the steady state is 3.892, and the bottom heatflux
+ at the steady state is 3.892, and the bottom heat flux
\begin_inset Formula $H_{botm}$
\end_inset
is 12.817.
- The heatflux imbalance (
+ The heat flux imbalance (
\begin_inset Formula $H_{botm}r_{inner}^{2}/H_{surf}r_{outer}^{2}-1$
\end_inset
) is -0.38%.
- The Nussult number, converted from Equation
+ The Nussult number, converted from the surface heat flux by Equation
\begin_inset LatexCommand ref
reference "eq:Nusselt number"
@@ -11564,8 +11564,8 @@
0.2
\family default
) too high.
- This can cause the mesh size to change too rapidly across an element and
- the temperature solver to generate pronounced numerical artifacts.
+ This can cause the mesh size to change too rapidly across an element, which
+ will generate pronounced numerical artifacts in the temperature solver.
\end_layout
\begin_layout LyX-Code
@@ -11709,8 +11709,6 @@
\newline
\newline
-
-\newline
[CitcomS.ccoupler]
\newline
two_way_communication = on
@@ -11720,8 +11718,6 @@
\newline
\newline
-
-\newline
[CitcomS.ecoupler]
\newline
two_way_communication = on
@@ -11735,8 +11731,6 @@
\newline
\newline
-
-\newline
# assigning processors
to csolver and esolver
\newline
@@ -11749,16 +11743,12 @@
\newline
\newline
-
-\newline
[CitcomS.ccontroller]
\newline
monitoringFrequency = 2
\newline
\newline
-
-\newline
[CitcomS.econtroller]
\newline
monitorin
@@ -11766,8 +11756,6 @@
\newline
\newline
-
-\newline
[CitcomS.csolver]
\newline
datadir_old = ic
@@ -11783,8 +11771,6 @@
\newline
\newline
-
-\newline
[CitcomS.csolver.mesher]
\newline
nprocz = 2
@@ -11815,8 +11801,6 @@
\newline
\newline
-
-\newline
[Cit
comS.csolver.bc]
\newline
@@ -11824,8 +11808,6 @@
\newline
\newline
-
-\newline
[CitcomS.csolver.param]
\newline
file_vbcs = on
@@ -11837,8 +11819,6 @@
\newline
\newline
-
-\newline
[CitcomS.csolver.ic]
\newline
tic_method = -1
@@ -11848,8 +11828,6 @@
\newline
\newline
-
-\newline
[CitcomS.csolver.tsolver]
\newline
ADV = on
@@ -11870,57 +11848,44 @@
\newline
\newline
-
-\newline
-[CitcomS.csolver.vsolver]
-\newline
-tole_compressibility = 8e-6
-\newline
-
-\newline
-
-\newline
[CitcomS.csolver.visc]
\newline
-VISC_UPD
-ATE = on
+VISC_UPDATE = on
\newline
num_mat = 4
\newline
visc0 = 1,1,1,1
\newline
-TDEPV = on
+TDEPV =
+ on
\newline
viscE = 1.6,1.6,1.6,1.6
\newline
viscT = 0,0,0,0
\newline
-VM
-IN = on
+VMIN = on
\newline
visc_min = 1.0
\newline
VMAX = on
\newline
-visc_max = 100.0
+visc_max
+ = 100.0
\newline
\newline
-
+###############################################
\newline
-####################################
-###########
-\newline
\newline
[CitcomS.esolver]
\newline
-datadir_old = ic
+datadir_ol
+d = ic
\newline
datafile_old = embd
\newline
-datadir =
- output
+datadir = output
\newline
datafile = embd
\newline
@@ -11928,14 +11893,12 @@
\newline
\newline
-
+[CitcomS.es
+olver.mesher]
\newline
-[CitcomS.esolver.mesher]
-\newline
nprocz = 2
\newline
-nodex
- = 21
+nodex = 21
\newline
nodey = 21
\newline
@@ -11943,10 +11906,10 @@
\newline
radius_outer = 0.999
\newline
-radius_inner = 0.551
+radius_in
+ner = 0.551
\newline
-theta_min
- = 1.421
+theta_min = 1.421
\newline
theta_max = 1.721
\newline
@@ -11956,55 +11919,41 @@
\newline
\newline
-
+[CitcomS.esolve
+r.ic]
\newline
-[CitcomS.esolver.ic]
+tic_method = -1
\newline
-tic_method
- = -1
-\newline
solution_cycles_init = 0
\newline
\newline
-
-\newline
-[CitcomS.esolver.vsolver]
-\newline
-tole_compressibility
- = 6e-6
-\newline
-
-\newline
-
-\newline
[CitcomS.esolver.tsolver]
\newline
-ADV = on
+ADV =
+ on
\newline
filter_temp = off
\newline
monitor_max_T = off
\newline
-finetu
-nedt = 0.9
+finetunedt = 0.9
\newline
fixed_timestep = 0
\newline
-adv_gamma = 0.5
+adv_gamm
+a = 0.5
\newline
adv_sub_iterations = 2
\newline
\newline
-
+[CitcomS.esolver.visc]
\newline
-[CitcomS.esolver.vi
-sc]
-\newline
VISC_UPDATE = on
\newline
-num_mat = 4
+num_mat
+ = 4
\newline
visc0 = 1,1,1,1
\newline
@@ -12012,12 +11961,12 @@
\newline
viscE = 1.6,1.6,1.6,1.6
\newline
-viscT
- = 0,0,0,0
+viscT = 0,0,0,0
\newline
VMIN = on
\newline
-visc_min = 1.0
+visc_min
+ = 1.0
\newline
VMAX = on
\newline
@@ -12025,12 +11974,9 @@
\newline
\newline
-
-\newline
[CitcomS.esolver.bc]
\newline
-side_s
-bcs = on
+side_sbcs = on
\end_layout
\begin_layout Subsection
@@ -12201,54 +12147,16 @@
\family typewriter
\size small
-file_vbcs=off
-\newline
-vel_bound_file="bvel.dat"
+mineral_physics_model=3
\end_layout
\end_inset
</cell>
-<cell alignment="center" valignment="top" topline="true" leftline="true" rightline="true" usebox="none">
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
\begin_inset Text
\begin_layout Standard
-If
-\family typewriter
-\size small
-file_vbcs
-\family default
-\size default
- is set to
-\family typewriter
-\size small
-on
-\family default
-\size default
-, the top surface velocity boundary conditions are read in from files which
- have location and name specified by
-\family typewriter
-\size small
-vel_bound_file
-\size default
-.
-
-\family default
- Requires setting
-\family typewriter
-\size small
-topvbc=1
-\family default
-\size default
- to take effect.
- If you wish to have a uniform top surface velocity boundary condition or
- some simple geometric pattern, then
-\family typewriter
-\size small
-file_vbcs
-\family default
-\size default
- should be set to zero.
-
+Using which mineral physics model to convert the seismic velocities.
\end_layout
\end_inset
@@ -12262,17 +12170,9 @@
\family typewriter
\size small
-coor=0
-\family default
-\size default
-
+file_vbcs=off
\newline
-
-\family typewriter
-\size small
-coor_file="coor.dat"
-\newline
-coor_refine=0.1,0.15,0.1,0.2
+vel_bound_file="bvel.dat"
\end_layout
\end_inset
@@ -12283,56 +12183,41 @@
\begin_layout Standard
If
\family typewriter
-coor
+\size small
+file_vbcs
\family default
- is set to 0, then there will be uniform mesh in the latitudinal, longitudinal,
- and radial directions.
- If you wish to have a regular but uneven spacing between elements,
+\size default
+ is set to
\family typewriter
-coor
-\family default
- should be set to
-\family typewriter
\size small
-1
+on
\family default
\size default
-.
- Then the coordinate is reading from the file specified by
+, the top surface velocity boundary conditions are read in from files which
+ have location and name specified by
\family typewriter
\size small
-coor_file
-\family default
+vel_bound_file
\size default
.
- If
-\family typewriter
-\size small
-coor
+
\family default
-\size default
- is set to
-\size small
-2
-\size default
-, then there will be uniform mesh in the latitudinal and longitudinal directions.
- The mesh in the radial direction is generated according to
+ Requires setting
\family typewriter
\size small
-coor_refine
+topvbc=1
\family default
\size default
-, which is a vector of 4 numbers.
- The 1st value of
+ to take effect.
+ If you wish to have a uniform top surface velocity boundary condition or
+ some simple geometric pattern, then
\family typewriter
\size small
-coor_refine
+file_vbcs
\family default
\size default
- specifies the radius fraction of the bottom layer, the 2nd value specifies
- the fraction of the nodes in the bottom layer, the 3rd values specifies
- the top layer fraction, and the last value specifies the top layer node
- fraction.
+ should be set to zero.
+
\end_layout
\end_inset
@@ -12477,7 +12362,7 @@
\begin_layout Standard
\noindent
\begin_inset Tabular
-<lyxtabular version="3" rows="7" columns="2">
+<lyxtabular version="3" rows="9" columns="2">
<features>
<column alignment="left" valignment="top" leftline="true" width="1.85in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="4.25in">
@@ -12501,41 +12386,29 @@
Choose the format and layout of the output files.
Can be either
\family typewriter
-\size small
ascii
\family default
-\size default
,
\family typewriter
-\size small
ascii-gz
\family default
-\size default
or
\family typewriter
-\size small
hdf5
\family default
-\size default
.
If
\family typewriter
-\size small
ascii-gz
\family default
-\size default
is chosen, the code places gzipped files into
\family typewriter
-\size small
data_dir
\family default
-\size default
, and will put all time-step output into subdirectories of
\family typewriter
-\size small
data_dir
\family default
-\size default
.
The same naming logic holds for reading old velo files.
\end_layout
@@ -12564,52 +12437,40 @@
\begin_layout Standard
Choose additional output, including
\family typewriter
-\size small
surf
\family default
-\size default
,
\family typewriter
-\size small
botm
\family default
-\size default
,
\family typewriter
-\size small
geoid
\family default
-\size default
,
\family typewriter
-\size small
+seismic
+\family default
+,
+\family typewriter
stress
\family default
-\size default
,
\family typewriter
-\size small
pressure
\family default
-\size default
,
\family typewriter
-\size small
connectivity
\family default
-\size default
,
\family typewriter
-\size small
horiz_avg, tracer, heating, comp_el
\family default
-\size default
and
\family typewriter
-\size small
comp_nd
\family default
-\size default
.
\end_layout
@@ -12659,23 +12520,17 @@
\begin_layout Standard
Controls the prefix of output file names such as
\family typewriter
-\size small
regtest.xxx
\family default
-\size default
.
Cannot contain the ``
\family typewriter
-\size small
/
\family default
-\size default
'' character if
\family typewriter
-\size small
output_format=ascii
\family default
-\size default
.
\end_layout
@@ -12776,6 +12631,51 @@
\end_inset
</cell>
</row>
+<row bottomline="true">
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
+\begin_inset Text
+
+\begin_layout Standard
+
+\family typewriter
+self_gravitation=off
+\end_layout
+
+\end_inset
+</cell>
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
+\begin_inset Text
+
+\begin_layout Standard
+Considering the effect the self gravitation on the geoid or not.
+\end_layout
+
+\end_inset
+</cell>
+</row>
+<row bottomline="true">
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
+\begin_inset Text
+
+\begin_layout Standard
+
+\family typewriter
+use_cbf_topo=off
+\end_layout
+
+\end_inset
+</cell>
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
+\begin_inset Text
+
+\begin_layout Standard
+Using the Consistent Boundary Flux (CBF) method to compute the dynamic topograph
+y or not.
+\end_layout
+
+\end_inset
+</cell>
+</row>
</lyxtabular>
\end_inset
@@ -12889,11 +12789,12 @@
\begin_layout Standard
These specify the number of FEM nodes in each spherical cap.
+ These parameters are not used in the C version if multigrid solver is used.
\newline
\newline
-For a full spherical
- model,
+For
+ a full spherical model,
\family typewriter
nodex
\family default
@@ -12938,10 +12839,12 @@
\end_inset
must be satisfied.
+ These parameters are not used in the C version if conjgrad solver is used.
\newline
\newline
-For a full spherical model,
+For
+ a full spherical model,
\family typewriter
mgunitx
\family default
@@ -12968,7 +12871,7 @@
\begin_layout Standard
\noindent
\begin_inset Tabular
-<lyxtabular version="3" rows="2" columns="2">
+<lyxtabular version="3" rows="3" columns="2">
<features>
<column alignment="left" valignment="top" leftline="true" width="1.85in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="4.25in">
@@ -13051,8 +12954,8 @@
are the inner and outer radii in non-dimensional units.
It is probably more convenient to normalize lengths by the radius of the
Earth.
- If you do this, then the Rayleigh number, given below, must be calculated
- with the radius of the Earth, not the thickness of the mantle.
+ If you do this, then the Rayleigh number must be calculated with the radius
+ of the Earth, not the thickness of the mantle.
The core mantle boundary is close to having a non-dimensional radius of
0.55.
\end_layout
@@ -13060,6 +12963,77 @@
\end_inset
</cell>
</row>
+<row bottomline="true">
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
+\begin_inset Text
+
+\begin_layout Standard
+
+\family typewriter
+coor
+\size small
+=0
+\newline
+
+\family default
+\size default
+
+\newline
+
+\family typewriter
+coor_file="coor.dat"
+\newline
+coor_refine=0.1,0.15,0.1,0.2
+\end_layout
+
+\end_inset
+</cell>
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
+\begin_inset Text
+
+\begin_layout Standard
+If
+\family typewriter
+coor=0
+\family default
+, there will be uniform mesh in the latitudinal, longitudinal, and radial
+ directions.
+
+\newline
+If
+\family typewriter
+coor=1
+\family default
+, the coordinate is reading from the file specified by
+\family typewriter
+coor_file
+\family default
+.
+ This is used to have a regular but uneven spacing between elements.
+\newline
+If
+\family typewriter
+coor=
+\family default
+2, there will be uniform mesh in the latitudinal and longitudinal directions.
+ The mesh in the radial direction is generated according to
+\family typewriter
+coor_refine
+\family default
+, which is a vector of 4 numbers.
+ The 1st value of
+\family typewriter
+coor_refine
+\family default
+ specifies the radius fraction of the bottom layer, the 2nd value specifies
+ the fraction of the nodes in the bottom layer, the 3rd values specifies
+ the top layer fraction, and the last value specifies the top layer node
+ fraction.
+\end_layout
+
+\end_inset
+</cell>
+</row>
</lyxtabular>
\end_inset
@@ -13215,7 +13189,7 @@
\family default
\size default
-(only in non-Pyre version)
+(only in pure C version)
\family typewriter
\size small
@@ -13272,7 +13246,7 @@
\begin_layout Standard
Controls the termination of the code based on total wall clock time used.
- Available only in non-Pyre version.
+ Available only in pure C version.
\end_layout
\end_inset
@@ -13899,7 +13873,7 @@
\family typewriter
toptbcval
\family default
- specifies the surface heatflux (not working in this version).
+ specifies the surface heat flux (not working in this version).
If
\family typewriter
toptbc
@@ -15193,6 +15167,8 @@
\family typewriter
\size small
remove_rigid_rotation=on
+\newline
+remove_angular_momentum=on
\end_layout
\end_inset
@@ -15201,7 +15177,8 @@
\begin_inset Text
\begin_layout Standard
-Whether to remove rigid body rotation component from the velocity solution.
+Whether to remove rigid body rotation component or net angular momentum
+ from the velocity solution.
Only effective for global models.
\end_layout
@@ -15256,7 +15233,7 @@
\end_inset
</cell>
-<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
+<cell alignment="center" valignment="top" topline="true" leftline="true" rightline="true" usebox="none">
\begin_inset Text
\begin_layout Standard
@@ -15283,11 +15260,13 @@
vlowstep=1000
\newline
vhighstep=3
+\newline
+max_mg_cycles=50
\end_layout
\end_inset
</cell>
-<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
+<cell alignment="center" valignment="top" topline="true" leftline="true" rightline="true" usebox="none">
\begin_inset Text
\begin_layout Standard
@@ -15340,11 +15319,19 @@
vhighstep
\family default
\size default
- are the number of smoothing passes at lowest/highest levels; all these
- parameters should be small integers.
- For
+ are the number of smoothing passes at lowest/highest levels;
\family typewriter
\size small
+max_mg_cycles
+\family default
+\size default
+ is the maximum number of multigrid cycles used per solve; all these parameters
+ should be small integers.
+
+\newline
+For
+\family typewriter
+\size small
cgrad
\family default
\size default
@@ -15375,7 +15362,7 @@
\end_inset
</cell>
-<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
+<cell alignment="center" valignment="top" topline="true" leftline="true" rightline="true" usebox="none">
\begin_inset Text
\begin_layout Standard
@@ -15393,9 +15380,7 @@
\family typewriter
\size small
-accuracy=1.0e-6
-\newline
-tole_compressibility=1.0e-7
+accuracy=1.0e-4
\end_layout
\end_inset
@@ -15422,8 +15407,6 @@
uzawa=cg
\newline
compress_iter_maxstep=100
-\newline
-relative_err_accuracy=0.001
\end_layout
\end_inset
@@ -15451,8 +15434,7 @@
cg
\family default
\size default
-, additional parameters control the maximum iterations and desired accuracy
- for the solver.
+, additional parameters control the maximum iterations.
\end_layout
\end_inset
@@ -16121,7 +16103,7 @@
to
\family typewriter
\size small
-restart=on
+tic_method=-1
\family default
\size default
.
@@ -16470,8 +16452,6 @@
Problem=convection
\newline
Geometry=sphere
-\newline
-Spacing=regular
\end_layout
\end_inset
@@ -16709,7 +16689,7 @@
\begin_layout Standard
\noindent
\begin_inset Tabular
-<lyxtabular version="3" rows="3" columns="2">
+<lyxtabular version="3" rows="4" columns="2">
<features>
<column alignment="left" valignment="top" leftline="true" width="1.85in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="4.25in">
@@ -16771,7 +16751,7 @@
\end_inset
</cell>
</row>
-<row topline="true" bottomline="true">
+<row topline="true">
<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
\begin_inset Text
@@ -16784,7 +16764,7 @@
\end_inset
</cell>
-<cell alignment="center" valignment="top" topline="true" leftline="true" rightline="true" usebox="none">
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
\begin_inset Text
\begin_layout Standard
@@ -16797,6 +16777,33 @@
\end_inset
</cell>
</row>
+<row topline="true" bottomline="true">
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
+\begin_inset Text
+
+\begin_layout Standard
+
+\family typewriter
+\size small
+command
+\end_layout
+
+\end_inset
+</cell>
+<cell alignment="center" valignment="top" topline="true" leftline="true" rightline="true" usebox="none">
+\begin_inset Text
+
+\begin_layout Standard
+
+\family typewriter
+The command used to launch the job.
+ The default value should be customized if using any job scheduler, otherwise,
+ the default value should work well.
+\end_layout
+
+\end_inset
+</cell>
+</row>
</lyxtabular>
\end_inset
@@ -16813,6 +16820,34 @@
\begin_layout Standard
The scheduler facility controls how CitcomS submits jobs to a batch scheduler.
+ Available schedulers include:
+\family typewriter
+none
+\family default
+ (default, not using a batch scheduler),
+\family typewriter
+lsf
+\family default
+ (for Load Sharing Facility batch scheduler),
+\family typewriter
+pbs
+\family default
+ (for Portable Batch System batch scheduler),
+\family typewriter
+sge
+\family default
+ (for Sun Grid Engine batch scheduler), and tacc-ranger (a variant of PBS,
+ customized for the Ranger cluster at Texas Advanced Computing Center).
+ Only the command options for these schedulers are listed below.
+ For more information on configuring Pyre for your batch system, see CIG's
+
+\begin_inset LatexCommand htmlurl
+name "Pythia page"
+target "geodynamics.org/cig/software/packages/cs/pythia/docs/batch"
+
+\end_inset
+
+.
\end_layout
\begin_layout Standard
@@ -17145,7 +17180,7 @@
\begin_layout Standard
\begin_inset Tabular
-<lyxtabular version="3" rows="22" columns="2">
+<lyxtabular version="3" rows="23" columns="2">
<features>
<column alignment="left" valignment="top" leftline="true" width="1.85in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="4.25in">
@@ -17387,6 +17422,29 @@
\family typewriter
\size small
+tracer
+\end_layout
+
+\end_inset
+</cell>
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
+\begin_inset Text
+
+\begin_layout Standard
+A facility for tracer parameters.
+\end_layout
+
+\end_inset
+</cell>
+</row>
+<row topline="true">
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
+\begin_inset Text
+
+\begin_layout Standard
+
+\family typewriter
+\size small
visc
\end_layout
@@ -17695,7 +17753,7 @@
\begin_layout Standard
\noindent
\begin_inset Tabular
-<lyxtabular version="3" rows="17" columns="2">
+<lyxtabular version="3" rows="16" columns="2">
<features>
<column alignment="left" valignment="top" leftline="true" width="1.85in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="4.25in">
@@ -17707,30 +17765,6 @@
\family typewriter
\size small
-nproc_surf=1 or 12
-\end_layout
-
-\end_inset
-</cell>
-<cell alignment="center" valignment="top" topline="true" leftline="true" rightline="true" usebox="none">
-\begin_inset Text
-
-\begin_layout Standard
-This parameter is set by the solver facility.
- Users do not need to change it.
-\end_layout
-
-\end_inset
-</cell>
-</row>
-<row topline="true">
-<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
-\begin_inset Text
-
-\begin_layout Standard
-
-\family typewriter
-\size small
nprocx=1
\end_layout
@@ -18394,7 +18428,7 @@
\family typewriter
\size small
-accuracy=1e-06
+accuracy=1.0e-4
\end_layout
\end_inset
@@ -18417,7 +18451,7 @@
\family typewriter
\size small
-tole_compressibility=1e-07
+uzawa=cg
\end_layout
\end_inset
@@ -18440,7 +18474,7 @@
\family typewriter
\size small
-uzawa=cg
+compress_iter_maxstep=100
\end_layout
\end_inset
@@ -18463,7 +18497,7 @@
\family typewriter
\size small
-compress_iter_maxstep=100
+mg_cycle=1
\end_layout
\end_inset
@@ -18486,7 +18520,7 @@
\family typewriter
\size small
-relative_err_accuracy=0.001
+down_heavy=3
\end_layout
\end_inset
@@ -18509,7 +18543,7 @@
\family typewriter
\size small
-mg_cycle=1
+up_heavy=3
\end_layout
\end_inset
@@ -18532,7 +18566,7 @@
\family typewriter
\size small
-down_heavy=3
+vlowstep=1000
\end_layout
\end_inset
@@ -18555,7 +18589,7 @@
\family typewriter
\size small
-up_heavy=3
+vhighstep=3
\end_layout
\end_inset
@@ -18578,7 +18612,7 @@
\family typewriter
\size small
-vlowstep=1000
+max_mg_cycles=50
\end_layout
\end_inset
@@ -18601,7 +18635,7 @@
\family typewriter
\size small
-vhighstep=3
+piterations=1000
\end_layout
\end_inset
@@ -18624,7 +18658,7 @@
\family typewriter
\size small
-piterations=1000
+aug_lagr=on
\end_layout
\end_inset
@@ -18647,7 +18681,7 @@
\family typewriter
\size small
-aug_lagr=on
+aug_number=2000
\end_layout
\end_inset
@@ -18662,7 +18696,7 @@
\end_inset
</cell>
</row>
-<row topline="true">
+<row topline="true" bottomline="true">
<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
\begin_inset Text
@@ -18670,7 +18704,7 @@
\family typewriter
\size small
-aug_number=2000
+remove_rigid_rotation=on
\end_layout
\end_inset
@@ -18685,7 +18719,7 @@
\end_inset
</cell>
</row>
-<row topline="true" bottomline="true">
+<row bottomline="true">
<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
\begin_inset Text
@@ -18693,7 +18727,7 @@
\family typewriter
\size small
-remove_rigid_rotation=on
+remove_angular_momentum=on
\end_layout
\end_inset
@@ -19411,7 +19445,7 @@
\begin_layout Standard
\noindent
\begin_inset Tabular
-<lyxtabular version="3" rows="14" columns="2">
+<lyxtabular version="3" rows="15" columns="2">
<features>
<column alignment="left" valignment="top" leftline="true" width="1.85in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="4.25in">
@@ -19676,6 +19710,29 @@
\family typewriter
\size small
+mantle_temp=1.0
+\end_layout
+
+\end_inset
+</cell>
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
+\begin_inset Text
+
+\begin_layout Standard
+
+\end_layout
+
+\end_inset
+</cell>
+</row>
+<row topline="true">
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
+\begin_inset Text
+
+\begin_layout Standard
+
+\family typewriter
+\size small
blob_center=[-999,-999,-999]
\end_layout
@@ -19753,7 +19810,7 @@
\begin_layout Standard
\begin_inset Tabular
-<lyxtabular version="3" rows="11" columns="2">
+<lyxtabular version="3" rows="13" columns="2">
<features>
<column alignment="left" valignment="top" leftline="true" width="1.85in">
<column alignment="left" valignment="top" leftline="true" rightline="true" width="4.25in">
@@ -19835,6 +19892,50 @@
\begin_layout Standard
\family typewriter
+self_gravitation=off
+\end_layout
+
+\end_inset
+</cell>
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
+\begin_inset Text
+
+\begin_layout Standard
+
+\end_layout
+
+\end_inset
+</cell>
+</row>
+<row topline="true">
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
+\begin_inset Text
+
+\begin_layout Standard
+
+\family typewriter
+use_cbf_topo=off
+\end_layout
+
+\end_inset
+</cell>
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
+\begin_inset Text
+
+\begin_layout Standard
+
+\end_layout
+
+\end_inset
+</cell>
+</row>
+<row topline="true">
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
+\begin_inset Text
+
+\begin_layout Standard
+
+\family typewriter
\size small
cb_block_size=1048576
\end_layout
@@ -20093,12 +20194,12 @@
\family typewriter
\size small
-file_vbcs=off
+mineral_physics_model=3
\end_layout
\end_inset
</cell>
-<cell alignment="center" valignment="top" topline="true" leftline="true" rightline="true" usebox="none">
+<cell alignment="center" valignment="top" topline="true" leftline="true" usebox="none">
\begin_inset Text
\begin_layout Standard
@@ -20116,7 +20217,7 @@
\family typewriter
\size small
-vel_bound_file="bvel.dat"
+file_vbcs=off
\end_layout
\end_inset
@@ -20139,7 +20240,7 @@
\family typewriter
\size small
-mat_control=off
+vel_bound_file="bvel.dat"
\end_layout
\end_inset
@@ -20162,7 +20263,7 @@
\family typewriter
\size small
-mat_file="mat.dat"
+mat_control=off
\end_layout
\end_inset
@@ -20185,7 +20286,7 @@
\family typewriter
\size small
-lith_age=off
+mat_file="mat.dat"
\end_layout
\end_inset
@@ -20208,7 +20309,7 @@
\family typewriter
\size small
-lith_age_file="age.dat"
+lith_age=off
\end_layout
\end_inset
@@ -20231,7 +20332,7 @@
\family typewriter
\size small
-lith_age_time=off
+lith_age_file="age.dat"
\end_layout
\end_inset
@@ -20254,7 +20355,7 @@
\family typewriter
\size small
-lith_age_depth=0.0314
+lith_age_time=off
\end_layout
\end_inset
@@ -20277,7 +20378,7 @@
\family typewriter
\size small
-mantle_temp=1.0
+lith_age_depth=0.0314
\end_layout
\end_inset
@@ -23010,7 +23111,7 @@
\end_layout
\begin_layout LyX-Code
-colatitude longitude topography heatflux vel_colat vel_lon
+colatitude longitude topography heat_flux vel_colat vel_lon
\end_layout
\begin_layout Section
@@ -23154,7 +23255,7 @@
\end_layout
\begin_layout LyX-Code
-topography heatflux vel_colat vel_lon
+topography heat_flux vel_colat vel_lon
\end_layout
\begin_layout Subsection
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