[cig-commits] r15495 - doc/CitcomS/manual

[sue at geodynamics.org]

Author: sue
Date: 2009-07-31 15:03:16 -0700 (Fri, 31 Jul 2009)
New Revision: 15495

Modified:
   doc/CitcomS/manual/citcoms.lyx
   doc/CitcomS/manual/citcoms.pdf
Log:
fixed some typos, broke up very long paragraph w/bullets for clarity; made new pdf

Modified: doc/CitcomS/manual/citcoms.lyx
===================================================================
--- doc/CitcomS/manual/citcoms.lyx	2009-07-31 21:47:17 UTC (rev 15494)
+++ doc/CitcomS/manual/citcoms.lyx	2009-07-31 22:03:16 UTC (rev 15495)
@@ -721,46 +721,115 @@
 \begin_layout Standard
 This release of CitcomS 3.1 adds the ability to convert temperature and compositi
 on to seismic velocities.
- The seismic velocities output can be uploaded to CIG Seismology Web Portal
- for SPECFEM3D simulation to generate synthetic seismograms.
- Other enhancements includes: Allowing tracers in global model with nproc
- > 2 by changing the mesh slightly; The convergence of Stokes solver is
- controlled by parameter ``accuracy'' in [CitcomS.solver.vsolver].
+ The seismic velocities output can be uploaded to the CIG Seismology Web
+ Portal for SPECFEM3D simulation to generate synthetic seismograms.
+ Other enhancements include:
+\end_layout
+
+\begin_layout Itemize
+Allowing tracers in global model with nproc > 2 by changing the mesh slightly;
+\end_layout
+
+\begin_layout Itemize
+The convergence of Stokes solver is controlled by parameter ``accuracy''
+ in [CitcomS.solver.vsolver].
  ``tole_compressibility'' and ``relative_err_accuracy'' are not used anymore.
  Also, the norms of div(u), u, and p are no longer dependent on the grid
- size; Adding self-gravitational effect on geoid and adding Consistent-Boundary-
-Flux (CBF) method to compute dynamic topography, contributed by Shijie Zhong;
- Adding GMT/NetCDF grd input for surface velocity boundary conditions, initial
+ size;
+\end_layout
+
+\begin_layout Itemize
+Adding a self-gravitational effect on geoid and adding the Consistent-Boundary-F
+lux (CBF) method to compute dynamic topography, contributed by Shijie Zhong;
+\end_layout
+
+\begin_layout Itemize
+Adding GMT/NetCDF grd input for surface velocity boundary conditions, initial
  temperature, material dependence and local Rayleigh number in surface layers,
- contributed by Thorsten Becker; Adding capability to read in time- and
- geographic-dependent, top surface temperature boundary conditions, contributed
- by Mike Gurnis; Allowing multi-component chemical viscosity; Optimizing
- the speed.
- Cookbook 8 becomes 13% faster than v3.0; Better convergence for the coupled
- solver case; Moving input parameter ``mantle_temp'' from [CitcomS.solver.param]
- to [CitcomS.solver.ic] section.
- Several bugs are fixed.
- Important bug fixes include: A memory bug in visual/project_geoid.c, fixed
- by Thorsten Becker; Initial temperature ``tic_method=0'' for regional model
- applied sinusoidal perturbations to 0th processor only; Initial temperature
- ``tic_method=1'' for regional model generated a top thermal boundary layer
- 25x older than specfied by ``half_space_age''; Compiling with both HDF5
- and Exchanger support will crash Cookbook 9 (Issue 528); Insufficient error
- checking when reading input files (Issue 265, reported by Clint Conrad);
- Installation bug: Python.h and system header not properly checked by configure
- script (Isse 45, reported by Vlad Manea and Ricardo Arevalo); Manual fixes:
- description of rheol=4 (Isse 152, reported by James Robert), energy equation
- (Issue 162 & 164, reported by Dan Bower), documented all ``tic_method''
- and ``rheol'' options.
+ contributed by Thorsten Becker;
 \end_layout
 
+\begin_layout Itemize
+Adding capability to read in time- and geographic-dependent, top surface
+ temperature boundary conditions, contributed by Mike Gurnis; 
+\end_layout
+
+\begin_layout Itemize
+Allowing multi-component chemical viscosity; 
+\end_layout
+
+\begin_layout Itemize
+Optimizing the speed.
+ Cookbook 8 becomes 13% faster than v3.0; 
+\end_layout
+
+\begin_layout Itemize
+Better convergence for the coupled solver case; 
+\end_layout
+
+\begin_layout Itemize
+Moving input parameter ``mantle_temp'' from [CitcomS.solver.param] to [CitcomS.solv
+er.ic] section.
+ 
+\end_layout
+
+\begin_layout Itemize
+Several bugs are fixed.
+ Important bug fixes include: 
+\end_layout
+
+\begin_deeper
+\begin_layout Itemize
+A memory bug in visual/project_geoid.c, fixed by Thorsten Becker; 
+\end_layout
+
+\begin_layout Itemize
+Initial temperature ``tic_method=0'' for regional model applied sinusoidal
+ perturbations to 0th processor only; 
+\end_layout
+
+\begin_layout Itemize
+Initial temperature ``tic_method=1'' for regional model generated a top
+ thermal boundary layer 25x older than specfied by ``half_space_age''; 
+\end_layout
+
+\begin_layout Itemize
+Compiling with both HDF5 and Exchanger support will crash Cookbook 9 (Issue
+ 528); 
+\end_layout
+
+\begin_layout Itemize
+Insufficient error checking when reading input files (Issue 265, reported
+ by Clint Conrad); 
+\end_layout
+
+\begin_layout Itemize
+Installation bug: Python.h and system header not properly checked by configure
+ script (Isse 45, reported by Vlad Manea and Ricardo Arevalo); 
+\end_layout
+
+\begin_layout Itemize
+Manual fixes: description of rheol=4 (Issue 152, reported by James Robert),
+ energy equation (Issue 162 & 164, reported by Dan Bower), documented all
+ ``tic_method'' and ``rheol'' options.
+\end_layout
+
+\end_deeper
 \begin_layout Standard
 Some of the aforementioned features are backward-incompatible, including:
- 1) The global mesh is changed.
- The coordinates of all nodes are shifted laterally slightly.
- The change is not discernible by eyes, but does affect the solution compared
+ 
+\end_layout
+
+\begin_layout Enumerate
+The global mesh is changed.
+ The coordinates of all nodes are slightly shifted laterally.
+ The change is not visually discernible, but does affect the solution compared
  to previous versions.
- 2) The convergence criterion of the Stokes solver is changed.
+ 
+\end_layout
+
+\begin_layout Enumerate
+The convergence criterion of the Stokes solver is changed.
  A single parameter ``accuracy'' is used to control the accuracy of the
  continuity and momentum equations.
  The default value of ``accuracy'' was 
@@ -772,10 +841,14 @@
 \end_inset
 
 .
- 3) The input parameter ``mantle_temp'' is moved from [CitcomS.solver.param]
- to [CitcomS.solver.ic] section.
+ 
 \end_layout
 
+\begin_layout Enumerate
+The input parameter ``mantle_temp'' is moved from the [CitcomS.solver.param]
+ to the [CitcomS.solver.ic] section.
+\end_layout
+
 \begin_layout Section
 About Pyre
 \end_layout
@@ -11464,7 +11537,7 @@
 p
 \family default
 .
- The convergence of Stokes solver is achieved if either 1) 
+ The convergence of the Stokes solver is achieved if either (1) 
 \family typewriter
 div/v 
 \family default
@@ -11472,7 +11545,7 @@
 \family typewriter
  accuracy
 \family default
- or 2) both 
+ or (2) both 
 \family typewriter
 dv/v
 \family default

Modified: doc/CitcomS/manual/citcoms.pdf
===================================================================
(Binary files differ)