[cig-commits] r15363 - in short/3D/PyLith/trunk/doc/presentations: . pylith1.3/figs pylith1.4 pylith1.4/figs
brad at geodynamics.org
brad at geodynamics.org
Fri Jun 19 17:18:16 PDT 2009
Author: brad
Date: 2009-06-19 17:18:14 -0700 (Fri, 19 Jun 2009)
New Revision: 15363
Added:
short/3D/PyLith/trunk/doc/presentations/pylith1.4/
short/3D/PyLith/trunk/doc/presentations/pylith1.4/figs/
short/3D/PyLith/trunk/doc/presentations/pylith1.4/figs/benchmark_scaling.pdf.BAK
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short/3D/PyLith/trunk/doc/presentations/pylith1.4/figs/packages.pdf.BAK
short/3D/PyLith/trunk/doc/presentations/pylith1.4/figs/packages.svg
short/3D/PyLith/trunk/doc/presentations/pylith1.4/figs/quad4cohesive.eps.gz
short/3D/PyLith/trunk/doc/presentations/pylith1.4/figs/quad4cohesive.fig
short/3D/PyLith/trunk/doc/presentations/pylith1.4/figs/savageprescott_profile2.pdf.BAK
short/3D/PyLith/trunk/doc/presentations/pylith1.4/figs/savageprescott_profile9.pdf.BAK
short/3D/PyLith/trunk/doc/presentations/pylith1.4/figs/savageprescott_soln.pdf.BAK
short/3D/PyLith/trunk/doc/presentations/pylith1.4/figs/workflow.png
short/3D/PyLith/trunk/doc/presentations/pylith1.4/makefile
short/3D/PyLith/trunk/doc/presentations/pylith1.4/pylith_overview.pdf
short/3D/PyLith/trunk/doc/presentations/pylith1.4/pylith_overview.tex
Removed:
short/3D/PyLith/trunk/doc/presentations/pylith1.3/figs/packages.fig
Modified:
short/3D/PyLith/trunk/doc/presentations/Makefile.am
Log:
Added pylith1.4 stuff.
Modified: short/3D/PyLith/trunk/doc/presentations/Makefile.am
===================================================================
--- short/3D/PyLith/trunk/doc/presentations/Makefile.am 2009-06-19 23:49:06 UTC (rev 15362)
+++ short/3D/PyLith/trunk/doc/presentations/Makefile.am 2009-06-20 00:18:14 UTC (rev 15363)
@@ -13,7 +13,8 @@
EXTRA_DIST = \
pylith1.0/pylith_overview.pdf \
pylith1.2/pylith_overview.pdf \
- pylith1.3/pylith_overview.pdf
+ pylith1.3/pylith_overview.pdf \
+ pylith1.4/pylith_overview.pdf
# End of file
Deleted: short/3D/PyLith/trunk/doc/presentations/pylith1.3/figs/packages.fig
===================================================================
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===================================================================
--- short/3D/PyLith/trunk/doc/presentations/pylith1.4/makefile (rev 0)
+++ short/3D/PyLith/trunk/doc/presentations/pylith1.4/makefile 2009-06-20 00:18:14 UTC (rev 15363)
@@ -0,0 +1,59 @@
+MASTERROOT = pylith_overview
+
+TEXMASTER = $(MASTERROOT).tex
+
+TEXSRCS =
+
+TEXFILES = $(TEXMASTER) $(TEXSRCS)
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+again:
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+
+clean:
+ rm -f $(AUXFILES) $(DVIFILE) $(PSFILE) $(PDFTMPFILE)\
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+ rm -fr auto
+ rm `find figs -name "*.pdf"`
+
+pdffigs:
+ for i in `find figs -name "*.eps"`; do ~/bin/epstopdf $$i; done
+ for i in `find figs -name "*.pdf.BAK"`; do j=`echo $$i | sed -e s/.BAK//g`; cp -f $$i $$j; done
+
+compressfigs:
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+
+uncompressfigs:
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+++ short/3D/PyLith/trunk/doc/presentations/pylith1.4/pylith_overview.tex 2009-06-20 00:18:14 UTC (rev 15363)
@@ -0,0 +1,358 @@
+\documentclass[pdftex,cig,slideColor]{pp4slides}
+\usepackage{amsmath}
+\usepackage{mpmulti}
+\usepackage{multirow}
+\usepackage{amsfonts}
+\usepackage{pifont}
+\usepackage{rotating} % use turn environment
+
+\title{PyLith}
+\subtitle{}
+\author{Brad Aagaard, Charles Williams, Matthew Knepley, \\[10pt]
+ Sue Kientz and Leif Strand}
+\institution{\includegraphics[height=2cm]{../logos/cig}}
+\date{June 22, 2009}
+
+% --------------------------------------------------------- DOCUMENT
+\begin{document}
+
+% ------------------------------------------------------------ SLIDE
+\maketitle
+\vfill
+
+% ------------------------------------------------------------ SLIDE
+\foilhead{PyLith}
+ \summary{What is it good for?}
+
+ \begin{itemize}
+ \item Elasticity problems where geometry does not change significantly
+ \item Quasi-static crustal deformation
+ \begin{itemize}
+ \item Strain accumulation associated with interseismic deformation
+ \item Post-seismic relaxation of the crust
+ \item Volcanic deformation associated with magma chambers and/or dikes
+ \end{itemize}
+ \item Dynamic rupture and wave propagation
+ \begin{itemize}
+ \item Kinematic (prescribed) earthquake ruptures
+ \item Local/regional ground-motion modeling
+ \end{itemize}
+ \end{itemize}
+
+\bgadd{\vspace*{7.9in}%
+ \begin{center}%
+ \includegraphics[height=14mm]{../logos/cig}
+ \end{center}}
+
+% ------------------------------------------------------------ SLIDE
+\foilhead{Crustal Deformation Modeling}
+ \summary{Overview of workflow for typical research problem}
+
+ \vfill
+ \begin{center}
+ \includegraphics[scale=0.9]{figs/workflow}
+ \end{center}
+
+% ------------------------------------------------------------ SLIDE
+\foilhead{Features in PyLith 1.4}
+ \summary{}
+
+ \begin{itemize}
+ \item Time integration schemes
+ \begin{itemize}
+ \item Implicit time stepping for quasi-static problems
+ \item Explicit time stepping for dynamic problems
+ \end{itemize}
+ \item Bulk constitutive models
+ \begin{itemize}
+ \item Elastic model (1-D, 2-D, and 3-D)
+ \item Linear and Generalized Maxwell viscoelastic models (3-D)
+ \item Power-law viscoelastic model (3-D)
+ \end{itemize}
+ \item Boundary and interface conditions
+ \begin{itemize}
+ \item Time-dependent Dirichlet boundary conditions
+ \item Time-dependent Neumann (traction) boundary conditions
+ \item Absorbing boundary conditions
+ \item Kinematic (prescribed slip) fault interfaces w/multiple ruptures
+ \item Time-dependent point forces
+ \item Gravitational body forces
+ \end{itemize}
+ \end{itemize}
+
+% ------------------------------------------------------------ SLIDE
+\foilhead{Features in PyLith 1.4 (cont.)}
+ \summary{}
+
+ \begin{itemize}
+ \item Automatic and user-controlled time stepping
+ \item Ability to specify initial stress state
+ \item Importing meshes
+ \begin{itemize}
+ \item LaGriT: GMV/Pset
+ \item CUBIT: Exodus II
+ \item ASCII: PyLith mesh ASCII format (intended for toy problems only)
+ \end{itemize}
+ \item Output: VTK files
+ \begin{itemize}
+ \item Solution over volume
+ \item Solution over surface boundary
+ \item State variables (e.g., stress and strain) for each material
+ \item Fault information (e.g., slip and tractions)
+ \end{itemize}
+ \item Automatic conversion of units for all parameters
+ \end{itemize}
+
+% ------------------------------------------------------------ SLIDE
+\foilhead{PyLith 1.4 Performance}
+ \summary{PyLith 1.4 is $\sim$5\% faster and uses $\sim$50\% less memory than PyLith 1.3}
+
+ \vfill
+ \begin{center}
+ \includegraphics[scale=1.0]{figs/benchmark_scaling}
+ \end{center}
+ \vfill
+
+% ------------------------------------------------------------ SLIDE
+\foilhead{PyLith 1.x: Planned Releases}
+ \summary{Current productivity is about 2 feature releases per year}
+
+ \begin{itemize}
+ \item PyLith 1.5: anticipate release in late 2009 or early 2010
+ \begin{itemize}
+ \item Fault constitutive behavior with several widely used friction models
+ \item Ability to specify initial strain and state variables
+ \end{itemize}
+ \item PyLith 1.6: Large deformations and finite strain
+ \item PyLith 1.7: Automation of 4-D Green's functions
+ \item PyLith 1.8: Coupling of quasi-static and dynamic simulations
+ \end{itemize}
+
+% ------------------------------------------------------------ SLIDE
+\foilhead{PyLith Design Objective}
+ \summary{Want a code developed for and by the community}
+
+ \begin{itemize}
+ \item Modular
+ \begin{itemize}
+ \item Users can swap modules to run the problem of interest
+ \end{itemize}
+ \item Scalable
+ \begin{itemize}
+ \item Code runs on one to a thousand processors efficiently
+ \end{itemize}
+ \item Extensible
+ \begin{itemize}
+ \item Expert users can add functionality to solve their problem
+ without polluting main code
+ \end{itemize}
+ \end{itemize}
+
+% ------------------------------------------------------------ SLIDE
+\foilhead{PyLith is a Community Code}
+ \summary{Success of code depends on community participation}
+
+ \begin{itemize}
+ \item End-users (anyone who uses the code)
+ \begin{itemize}
+ \item Help define and prioritize features that should be added
+ \item Report bugs/problems and suggest improvements
+ \end{itemize}
+ \item Expert users
+ \begin{itemize}
+ \item Help test alpha versions of releases
+ \item Run benchmarks and report results
+ \item Contribute meshing and visualization examples to documentation
+ \item Add features following template (e.g., constitutive models)
+ \end{itemize}
+ \item Developer
+ \begin{itemize}
+ \item Define development strategy
+ \item Implement new features and tests
+ \item Write documentation
+ \end{itemize}
+ \end{itemize}
+
+% ------------------------------------------------------------ SLIDE
+\foilhead{PyLith Design: Focus on Geodynamics}
+ \summary{Leverage packages developed by computational scientists}
+
+ \vfill
+ \begin{center}
+ \includegraphics[scale=0.9]{figs/packages}
+ \end{center}
+
+% ------------------------------------------------------------ SLIDE
+\foilhead{PyLith Design: Code Architecture}
+ \summary{Flexible and modular with good performance}
+
+ \begin{itemize}
+ \item Top-level code written in Python
+ \begin{itemize}
+ \item Expressive, high-level, object-oriented language
+ \item Dynamic typing allows adding additional modules at runtime
+ \item Convenient scripting
+ \end{itemize}
+ \item Low-level code written in C++
+ \begin{itemize}
+ \item Compiled (fast execution), object oriented language
+ \end{itemize}
+ \item Bindings to glue Python \& C++ together
+ \begin{itemize}
+ \item SWIG generates code for calling C++ functions from Python
+ \end{itemize}
+ \end{itemize}
+
+% ------------------------------------------------------------ SLIDE
+\foilhead{PyLith Design}
+ \summary{Tests, tests, and more tests ($>$1100 in all)}
+
+ \begin{itemize}
+ \item Create tests for nearly every function during development
+ \begin{itemize}
+ \item Remove most bugs during initial implementation
+ \item Isolate and expose bugs at origin
+ \end{itemize}
+ \item Create new tests to expose bugs reported
+ \begin{itemize}
+ \item Prevent bugs from reoccurring
+ \end{itemize}
+ \item Rerun tests whenever code is changed
+ \begin{itemize}
+ \item Allows optimization of performance with quality control
+ \item Code continually improves
+ \end{itemize}
+ \end{itemize}
+
+% ------------------------------------------------------------ SLIDE
+\foilhead{Example of Automated Building and Testing}
+ \summary{Test written to expose bug, buildbot shows tests fail}
+
+ \begin{center}
+ \includegraphics[scale=0.68]{figs/buildbotfail}
+ \end{center}
+
+% ------------------------------------------------------------ SLIDE
+\foilhead{Automated Building and Testing}
+ \summary{Bug is fixed, buildbot shows tests pass}
+
+ \begin{center}
+ \includegraphics[scale=0.68]{figs/buildbotsuccess}
+ \end{center}
+
+% ------------------------------------------------------------ SLIDE
+\foilhead{Implementation: Finite-Element Data Structures}
+ \summary{Use Sieve for storage and manipulating mesh information}
+
+ \begin{itemize}
+ \item PyLith makes only a few MPI calls
+ \item Data structures are independent of basis functions and
+ reference cells
+ \begin{itemize}
+ \item Same code for many cell shapes and types
+ \item Physics implementation limits code, not data structures
+ \end{itemize}
+ \item Sieve routines force adhering to finite-element formulation
+ \begin{itemize}
+ \item Do not have access to underlying storage
+ \item Manipulations must be done using Sieve interface
+ \item Only valid finite-element manipulation is allowed
+ \end{itemize}
+ \end{itemize}
+
+% ------------------------------------------------------------ SLIDE
+\foilhead{Implementation: Fault Interfaces}
+ \summary{Use cohesive cells to control fault behavior}
+
+ \vfill
+ \begin{center}
+ \includegraphics[scale=1.5]{figs/quad4cohesive}
+ \end{center}
+
+% ------------------------------------------------------------ SLIDE
+\foilhead{Kinematic (prescribed) slip earthquake ruptures}
+ \summary{Use Lagrange multipliers to specify slip}
+
+ \begin{itemize}
+ \item System without cohesive cells
+ \begin{equation}
+ \underbar{A} \vec{u} = \vec{b} \nonumber
+ \end{equation}
+ \item System with cohesive cells
+ \begin{equation}
+ \left( \begin{array}{cc}
+ \underbar{A} & \underbar{C}^T\\
+ \underbar{C} & 0
+ \end{array} \right)
+ \left( \begin{array}{c}
+ \vec{u}\\
+ \vec{L}
+ \end{array}\right)
+ =
+ \left( \begin{array}{c}
+ \vec{b}\\
+ \vec{D}
+ \end{array} \right)
+ \nonumber
+ \end{equation}
+ \end{itemize}
+
+% ------------------------------------------------------------ SLIDE
+\foilhead{Implementing Fault Slip with Lagrange multipliers}
+
+ \begin{itemize}
+ \item Advantages
+ \begin{itemize}
+ \item Fault implementation is local to cohesive cell
+ \item Solution includes forces generating slip (Lagrange multipliers)
+ \item Retains block structure of matrix (same number of DOF per vertex)
+ \item Offsets in mesh mimic slip on natural faults
+ \end{itemize}
+ \item Disadvantages
+ \begin{itemize}
+ \item Creates a saddle point problem (slower convergence)
+ \item Mixes displacements and forces in solution
+ \end{itemize}
+ \end{itemize}
+
+% ------------------------------------------------------------ SLIDE
+%\foilhead{Benchmarking PyLith}
+% \summary{Savage and Prescott (1978): Repeated Strike-slip ruptures}
+%
+% \movie{0.58in}{0.0in}{7.84in}{5.84in}{movies/savageprescott_domain}
+
+% ------------------------------------------------------------ SLIDE
+%\foilhead{Benchmarking PyLith}
+% \summary{Savage and Prescott (1978): Repeated Strike-slip ruptures}
+%
+% \movie{0.58in}{0.0in}{7.84in}{5.84in}{movies/savageprescott_groundsurf}
+
+% ------------------------------------------------------------ SLIDE
+\foilhead{Benchmarking PyLith}
+ \summary{Analytical solution from Savage and Prescott (1978)}
+
+ \begin{itemize}
+ \item Repeated rupture on a vertical, strike-slip fault
+ \item Elastic layer over a linear Maxwell viscoelastic half-space
+ \item Steady creep over bottom half of the elastic layer
+ \end{itemize}
+
+ \vfill
+ \begin{center}
+ \includegraphics[scale=0.8]{figs/savageprescott_soln}
+ \end{center}
+
+% ------------------------------------------------------------ SLIDE
+\foilhead{Benchmarking PyLith}
+ \summary{Simulation closely matches analytical solution during 10th eq cycle}
+
+ \vfill
+ \begin{center}
+ \includegraphics[scale=1.2]{figs/savageprescott_profile9}
+ \end{center}
+
+% --------------------------------------------------------- DOCUMENT
+\end{document}
+
+
+% End of file
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