[cig-commits] r14470 - in mc/2D/ConMan/trunk: doc visual/gmt
becker at geodynamics.org
becker at geodynamics.org
Thu Mar 26 12:55:19 PDT 2009
Author: becker
Date: 2009-03-26 12:55:19 -0700 (Thu, 26 Mar 2009)
New Revision: 14470
Modified:
mc/2D/ConMan/trunk/doc/conman.lyx
mc/2D/ConMan/trunk/visual/gmt/split_field_out
Log:
Committing trial change of manual.
Modified: mc/2D/ConMan/trunk/doc/conman.lyx
===================================================================
--- mc/2D/ConMan/trunk/doc/conman.lyx 2009-03-26 18:28:00 UTC (rev 14469)
+++ mc/2D/ConMan/trunk/doc/conman.lyx 2009-03-26 19:55:19 UTC (rev 14470)
@@ -1,5 +1,5 @@
-#LyX 1.5.1 created this file. For more info see http://www.lyx.org/
-\lyxformat 276
+#LyX 1.6.1 created this file. For more info see http://www.lyx.org/
+\lyxformat 345
\begin_document
\begin_header
\textclass book
@@ -123,6 +123,7 @@
\makeatother
\end_preamble
+\use_default_options false
\language english
\inputencoding latin9
\font_roman default
@@ -133,9 +134,11 @@
\font_osf false
\font_sf_scale 100
\font_tt_scale 100
+
\graphics default
\paperfontsize default
\spacing single
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\papersize default
\use_geometry false
\use_amsmath 0
@@ -165,7 +168,7 @@
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\begin_inset Graphics
filename images/conman_cover.pdf
@@ -203,9 +206,13 @@
\begin_layout Author
© California Institute of Technology
-\newline
+\begin_inset Newline newline
+\end_inset
+
Scott King
-\newline
+\begin_inset Newline newline
+\end_inset
+
Version 2.0
\end_layout
@@ -213,7 +220,7 @@
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@@ -253,7 +260,8 @@
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@@ -312,7 +321,8 @@
Porting it to other systems should be straightforward.
As with anything free it comes with no guarantees, but it has been benchmarked
against other existing codes (see Chapter
-\begin_inset LatexCommand ref
+\begin_inset CommandInset ref
+LatexCommand ref
reference "cha:The-Benchmark-Cases"
\end_inset
@@ -321,7 +331,8 @@
The authors would appreciate any information regarding bugs or potential
problems but make no promises regarding the timeliness of changes or fixes;
see Section
-\begin_inset LatexCommand ref
+\begin_inset CommandInset ref
+LatexCommand ref
reference "sec:Support"
\end_inset
@@ -409,9 +420,14 @@
The ConMan team requests that in your oral presentations and in your papers
that you indicate your use of this code and acknowledge the author of the
code and CIG
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@@ -447,7 +463,10 @@
\emph on
The Finite Element Method
\emph default
-) Chapter\InsetSpace ~
+) Chapter
+\begin_inset space ~
+\end_inset
+
1, sections 1-4.
There are two ways we can write the equation, the strong and the weak form.
More readers are probably more familiar with the strong form, and less
@@ -643,7 +662,8 @@
\emph default
is referred to as the element stiffness matrix.
There will be more to say about the implementation in Section
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says that they are normalized, so that they sum to one (everywhere on X,Y).
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@@ -1011,23 +1055,35 @@
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- these shape functions satisfy the conditions in Equation\InsetSpace ~
+ these shape functions satisfy the conditions in Equation
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.
A good exercise would be to show this is true.
A visual representation of these shape functions is shown in Figure
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above (see Figure
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If the transformation was from an arbitratry shaped quadrilateral to the
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method: the global domain and the parent element domain (Figure
-\begin_inset LatexCommand ref
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For ConMan the choice was made to use bilinear quadrilaterals as the parent
elements (Figure
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transforms global nodes to equation numbers (Figure
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-\begin_inset LatexCommand ref
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\end_inset
.
- Substituting Equation\InsetSpace ~
+ Substituting Equation
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-\begin_inset LatexCommand ref
+
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reference "eq:constit-lam2"
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-\begin_inset LatexCommand ref
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-\begin_inset LatexCommand ref
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@@ -2579,18 +2673,26 @@
\end_layout
\begin_layout Standard
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+\end_inset
-\begin_inset LatexCommand ref
+
+\begin_inset CommandInset ref
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reference "eq:84"
\end_inset
) is made up of the two terms from the left hand side of the integral equation.
The full element stiffness matrix for the quadralilateral element is an
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+ 8 by 8 matrix made up of 16 of the 2 by 2 matrices as shown in Figure
+\begin_inset space ~
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-\begin_inset LatexCommand ref
+
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term is under-integrated (one point rule) to keep the large penalty value
from effectively locking the element
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key "Malkus and Hughes 1978"
\end_inset
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).
The momentum equation is equivalent to an incompressible elastic problem,
and the resulting stiffness matrix will always be positive definite
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after "p. 84-89"
key "Hughes 1987"
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matrix and save both storage and operations using Cholesky factorization.
More details of the method and a formal error analysis can be found in
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label{fig:5-The-element-stiffness}The element stiffness matrix for
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%the 2D Cartesian stokes equation.
The 8 by 8 matrix is make up of
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%16 2 by 2 submatrices of the form shown below.
The $
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lambda$ and
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%$
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mu$ parts are shown separately for clarity.}
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%I'm not sure if we need this too...
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+\begin_layout Plain Layout
{
\end_layout
@@ -16163,7 +16543,7 @@
\begin_inset ERT
status collapsed
-\begin_layout Standard
+\begin_layout Plain Layout
\backslash
@@ -16176,7 +16556,7 @@
\begin_inset ERT
status collapsed
-\begin_layout Standard
+\begin_layout Plain Layout
}
\end_layout
@@ -16191,7 +16571,7 @@
\begin_inset ERT
status collapsed
-\begin_layout Standard
+\begin_layout Plain Layout
{
\end_layout
@@ -16202,7 +16582,7 @@
\begin_inset ERT
status collapsed
-\begin_layout Standard
+\begin_layout Plain Layout
\backslash
@@ -16215,7 +16595,7 @@
\begin_inset ERT
status collapsed
-\begin_layout Standard
+\begin_layout Plain Layout
}
\end_layout
@@ -16241,7 +16621,7 @@
\begin_inset ERT
status collapsed
-\begin_layout Standard
+\begin_layout Plain Layout
{
\end_layout
@@ -16252,7 +16632,7 @@
\begin_inset ERT
status collapsed
-\begin_layout Standard
+\begin_layout Plain Layout
\backslash
@@ -16265,7 +16645,7 @@
\begin_inset ERT
status collapsed
-\begin_layout Standard
+\begin_layout Plain Layout
}
\end_layout
@@ -16279,7 +16659,7 @@
\begin_inset ERT
status collapsed
-\begin_layout Standard
+\begin_layout Plain Layout
{
\end_layout
@@ -16290,7 +16670,7 @@
\begin_inset ERT
status collapsed
-\begin_layout Standard
+\begin_layout Plain Layout
\backslash
@@ -16305,7 +16685,7 @@
\begin_inset ERT
status collapsed
-\begin_layout Standard
+\begin_layout Plain Layout
\backslash
@@ -16318,7 +16698,7 @@
\begin_inset ERT
status collapsed
-\begin_layout Standard
+\begin_layout Plain Layout
}
\end_layout
@@ -16341,7 +16721,7 @@
\begin_inset ERT
status collapsed
-\begin_layout Standard
+\begin_layout Plain Layout
}
\end_layout
@@ -16352,7 +16732,8 @@
\end_layout
\begin_layout Chapter
-\begin_inset LatexCommand label
+\begin_inset CommandInset label
+LatexCommand label
name "cha:The-Benchmark-Cases"
\end_inset
@@ -16379,7 +16760,8 @@
\begin_layout Standard
Here we reproduce the results from Blankenbach
-\begin_inset LatexCommand cite
+\begin_inset CommandInset citation
+LatexCommand cite
key "Blankenbach et al, 1989"
\end_inset
@@ -16409,18 +16791,24 @@
\begin_inset Formula $10^{6}$
\end_inset
- respectively and the dimensional parameters are listed in Table\InsetSpace ~
+ respectively and the dimensional parameters are listed in Table
+\begin_inset space ~
+\end_inset
-\begin_inset LatexCommand ref
+
+\begin_inset CommandInset ref
+LatexCommand ref
reference "tab:Mantle-parameters-for"
\end_inset
.
The time is the runtime in seconds for the Picard version of the code using
- 100 iterations on an intel MacPro with two 3\InsetSpace ~
-GHz processors using the Intel
- fortran compiler with -O2 optimization.
+ 100 iterations on an intel MacPro with two 3
+\begin_inset space ~
+\end_inset
+
+GHz processors using the Intel fortran compiler with -O2 optimization.
While the problems in Blankenbach et al.
are specified dimensionally, the equations are solved non-dimensionally
within ConMan for numerical stability and the scaling factors are applied
@@ -16432,9 +16820,13 @@
of Nusselt number and root-mean-square velocity, as well as the topography
and geoid at the left- and right-hand side of the domain are reported,
along with the extrapolated value from Christensen's results (see Blankenbach
- et al., 1989 for discussion) in Table\InsetSpace ~
+ et al., 1989 for discussion) in Table
+\begin_inset space ~
+\end_inset
-\begin_inset LatexCommand ref
+
+\begin_inset CommandInset ref
+LatexCommand ref
reference "tab:Blankenbach-(1989)-Benchmark-1a"
\end_inset
@@ -16443,9 +16835,13 @@
\begin_inset Formula $10^{4}$
\end_inset
-), Table\InsetSpace ~
+), Table
+\begin_inset space ~
+\end_inset
-\begin_inset LatexCommand ref
+
+\begin_inset CommandInset ref
+LatexCommand ref
reference "tab:Blankenbach-(1989)-Benchmark-1b"
\end_inset
@@ -16454,9 +16850,13 @@
\begin_inset Formula $10^{5}$
\end_inset
-), and Table\InsetSpace ~
+), and Table
+\begin_inset space ~
+\end_inset
-\begin_inset LatexCommand ref
+
+\begin_inset CommandInset ref
+LatexCommand ref
reference "tab:Blankenbach-(1989)-Benchmark-1c"
\end_inset
@@ -16479,7 +16879,10 @@
\begin_inset Formula $10^{6}$
\end_inset
- calculations (Table\InsetSpace ~
+ calculations (Table
+\begin_inset space ~
+\end_inset
+
7.4).
For the 200 by 200 grid, all values converge to Christensen's extrapolated
results.
@@ -16492,11 +16895,11 @@
sideways false
status open
-\begin_layout Standard
+\begin_layout Plain Layout
\end_layout
-\begin_layout Standard
+\begin_layout Plain Layout
\align center
\begin_inset Tabular
<lyxtabular version="3" rows="11" columns="4">
@@ -16505,11 +16908,11 @@
<column alignment="center" valignment="top" width="0">
<column alignment="center" valignment="top" width="0">
<column alignment="center" valignment="top" width="0">
-<row topline="true">
+<row>
<cell multicolumn="1" alignment="none" valignment="top" topline="true" usebox="none" special="c">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
Parameter
\end_layout
@@ -16518,7 +16921,7 @@
<cell multicolumn="1" alignment="none" valignment="top" topline="true" usebox="none" special="c">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
Symbol
\end_layout
@@ -16527,7 +16930,7 @@
<cell multicolumn="1" alignment="none" valignment="top" topline="true" usebox="none" special="c">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
Value
\end_layout
@@ -16536,18 +16939,18 @@
<cell alignment="none" valignment="top" topline="true" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
\end_layout
\end_inset
</cell>
</row>
-<row topline="true">
+<row>
<cell alignment="left" valignment="top" topline="true" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
depth of domain
\end_layout
@@ -16556,7 +16959,7 @@
<cell alignment="center" valignment="top" topline="true" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
\begin_inset Formula $d$
\end_inset
@@ -16568,11 +16971,14 @@
<cell alignment="center" valignment="top" topline="true" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
\begin_inset Formula $10^{6}$
\end_inset
-\InsetSpace ~
+
+\begin_inset space ~
+\end_inset
+
m
\end_layout
@@ -16581,7 +16987,7 @@
<cell alignment="none" valignment="top" topline="true" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
\end_layout
@@ -16592,7 +16998,7 @@
<cell alignment="left" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
gravitational acceleration
\end_layout
@@ -16601,7 +17007,7 @@
<cell alignment="center" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
g
\end_layout
@@ -16610,7 +17016,7 @@
<cell alignment="center" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
10 m/s
\begin_inset Formula $^{2}$
\end_inset
@@ -16623,7 +17029,7 @@
<cell alignment="none" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
\end_layout
@@ -16634,7 +17040,7 @@
<cell alignment="left" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
temperature difference
\end_layout
@@ -16643,7 +17049,7 @@
<cell alignment="center" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
\begin_inset Formula $\Delta T$
\end_inset
@@ -16655,7 +17061,7 @@
<cell alignment="center" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
1000 K
\end_layout
@@ -16664,7 +17070,7 @@
<cell alignment="none" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
\end_layout
@@ -16675,7 +17081,7 @@
<cell alignment="left" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
density
\end_layout
@@ -16684,7 +17090,7 @@
<cell alignment="center" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
\begin_inset Formula $\rho$
\end_inset
@@ -16696,8 +17102,11 @@
<cell alignment="center" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
-4000\InsetSpace ~
+\begin_layout Plain Layout
+4000
+\begin_inset space ~
+\end_inset
+
kg m
\begin_inset Formula $^{-3}$
\end_inset
@@ -16710,7 +17119,7 @@
<cell alignment="none" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
\end_layout
@@ -16721,7 +17130,7 @@
<cell alignment="left" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
thermal diffusivity
\end_layout
@@ -16730,7 +17139,7 @@
<cell alignment="center" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
\begin_inset Formula $\kappa$
\end_inset
@@ -16742,7 +17151,7 @@
<cell alignment="center" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
\begin_inset Formula $1.0\times10^{-6}$
\end_inset
@@ -16762,7 +17171,7 @@
<cell alignment="none" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
\end_layout
@@ -16773,7 +17182,7 @@
<cell alignment="left" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
coefficient of thermal expansion
\end_layout
@@ -16782,7 +17191,7 @@
<cell alignment="center" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
\begin_inset Formula $\alpha$
\end_inset
@@ -16794,7 +17203,7 @@
<cell alignment="center" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
\begin_inset Formula $2.5\times10^{-5}$
\end_inset
@@ -16806,7 +17215,7 @@
<cell alignment="none" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
\end_layout
@@ -16817,7 +17226,7 @@
<cell alignment="left" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
kinematic viscosity
\end_layout
@@ -16826,7 +17235,7 @@
<cell alignment="center" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
\begin_inset Formula $\eta$
\end_inset
@@ -16838,7 +17247,7 @@
<cell alignment="center" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
\begin_inset Formula $2.5\times10^{19}$
\end_inset
@@ -16850,7 +17259,7 @@
<cell alignment="none" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
\end_layout
@@ -16861,11 +17270,11 @@
<cell alignment="left" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
\begin_inset ERT
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-\begin_layout Standard
+\begin_layout Plain Layout
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@@ -16882,11 +17291,11 @@
<cell alignment="center" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
\begin_inset ERT
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@@ -16903,7 +17312,7 @@
<cell alignment="center" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
\begin_inset Formula $2.5\times10^{18}$
\end_inset
@@ -16915,7 +17324,7 @@
<cell alignment="none" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
\end_layout
@@ -16926,11 +17335,11 @@
<cell alignment="left" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
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<cell alignment="center" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
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@@ -16968,7 +17377,7 @@
<cell alignment="center" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
\begin_inset Formula $2.5\times10^{17}$
\end_inset
@@ -16980,18 +17389,18 @@
<cell alignment="none" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
\end_layout
\end_inset
</cell>
</row>
-<row bottomline="true">
+<row>
<cell alignment="left" valignment="top" bottomline="true" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
gravitational constant
\end_layout
@@ -17000,7 +17409,7 @@
<cell alignment="center" valignment="top" bottomline="true" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
\begin_inset Formula $G$
\end_inset
@@ -17012,7 +17421,7 @@
<cell alignment="center" valignment="top" bottomline="true" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
\begin_inset Formula $6.673\times10^{-11}$
\end_inset
@@ -17024,7 +17433,7 @@
<cell alignment="none" valignment="top" bottomline="true" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
\end_layout
@@ -17038,11 +17447,12 @@
\end_layout
-\begin_layout Standard
+\begin_layout Plain Layout
\begin_inset Caption
-\begin_layout Standard
-\begin_inset LatexCommand label
+\begin_layout Plain Layout
+\begin_inset CommandInset label
+LatexCommand label
name "tab:Mantle-parameters-for"
\end_inset
@@ -17055,8 +17465,9 @@
\end_layout
-\begin_layout Standard
-\begin_inset LatexCommand label
+\begin_layout Plain Layout
+\begin_inset CommandInset label
+LatexCommand label
name "default"
\end_inset
@@ -17075,11 +17486,11 @@
sideways false
status open
-\begin_layout Standard
+\begin_layout Plain Layout
\begin_inset ERT
status collapsed
-\begin_layout Standard
+\begin_layout Plain Layout
\backslash
@@ -17092,19 +17503,19 @@
\begin_inset Tabular
<lyxtabular version="3" rows="6" columns="8">
<features>
-<column alignment="right" valignment="top" leftline="true" width="0">
+<column alignment="right" valignment="top" width="0">
<column alignment="center" valignment="top" width="0">
<column alignment="center" valignment="top" width="0">
<column alignment="center" valignment="top" width="0">
<column alignment="center" valignment="top" width="0">
<column alignment="center" valignment="top" width="0">
<column alignment="center" valignment="top" width="0">
-<column alignment="right" valignment="top" rightline="true" width="0">
-<row topline="true">
+<column alignment="right" valignment="top" width="0">
+<row>
<cell multicolumn="1" alignment="none" valignment="top" topline="true" usebox="none" special="|c">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
Grid
\end_layout
@@ -17113,7 +17524,7 @@
<cell multicolumn="1" alignment="none" valignment="top" topline="true" usebox="none" special="c">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
V
\begin_inset Formula $_{rms}$
\end_inset
@@ -17126,7 +17537,7 @@
<cell multicolumn="1" alignment="none" valignment="top" topline="true" usebox="none" special="c">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
Nusselt No.
\end_layout
@@ -17135,7 +17546,7 @@
<cell multicolumn="1" alignment="none" valignment="top" topline="true" usebox="none" special="c">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
Topo
\begin_inset Formula $_{L}$
\end_inset
@@ -17148,7 +17559,7 @@
<cell multicolumn="1" alignment="none" valignment="top" topline="true" usebox="none" special="c">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
Topo
\begin_inset Formula $_{R}$
\end_inset
@@ -17161,7 +17572,7 @@
<cell multicolumn="1" alignment="none" valignment="top" topline="true" usebox="none" special="c">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
Geoid
\begin_inset Formula $_{L}$
\end_inset
@@ -17174,7 +17585,7 @@
<cell multicolumn="1" alignment="none" valignment="top" topline="true" usebox="none" special="c">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
Geoid
\begin_inset Formula $_{R}$
\end_inset
@@ -17187,18 +17598,18 @@
<cell multicolumn="1" alignment="none" valignment="top" topline="true" usebox="none" special="c|">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
Run Time (sec)
\end_layout
\end_inset
</cell>
</row>
-<row topline="true">
+<row>
<cell alignment="right" valignment="top" topline="true" leftline="true" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
50
\end_layout
@@ -17207,7 +17618,7 @@
<cell alignment="center" valignment="top" topline="true" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
42.906
\end_layout
@@ -17216,7 +17627,7 @@
<cell alignment="center" valignment="top" topline="true" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
4.887
\end_layout
@@ -17225,7 +17636,7 @@
<cell alignment="center" valignment="top" topline="true" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
2261.956
\end_layout
@@ -17234,7 +17645,7 @@
<cell alignment="center" valignment="top" topline="true" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
-2911.473
\end_layout
@@ -17243,7 +17654,7 @@
<cell alignment="center" valignment="top" topline="true" usebox="none">
\begin_inset Text
-\begin_layout Standard
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55.346
\end_layout
@@ -17252,7 +17663,7 @@
<cell alignment="center" valignment="top" topline="true" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
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\end_layout
@@ -17261,7 +17672,7 @@
<cell alignment="right" valignment="top" topline="true" rightline="true" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
1.98
\end_layout
@@ -17272,7 +17683,7 @@
<cell alignment="right" valignment="top" leftline="true" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
100
\end_layout
@@ -17281,7 +17692,7 @@
<cell alignment="center" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
42.875
\end_layout
@@ -17290,7 +17701,7 @@
<cell alignment="center" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
4.885
\end_layout
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<cell alignment="center" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
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2256.094
\end_layout
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<cell alignment="center" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
-2905.356
\end_layout
@@ -17317,7 +17728,7 @@
<cell alignment="center" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
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54.957
\end_layout
@@ -17326,7 +17737,7 @@
<cell alignment="center" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
+\begin_layout Plain Layout
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@@ -17335,7 +17746,7 @@
<cell alignment="right" valignment="top" rightline="true" usebox="none">
\begin_inset Text
-\begin_layout Standard
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18.04
\end_layout
@@ -17346,7 +17757,7 @@
<cell alignment="right" valignment="top" leftline="true" usebox="none">
\begin_inset Text
-\begin_layout Standard
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200
\end_layout
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<cell alignment="center" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
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42.867
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<cell alignment="center" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
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4.885
\end_layout
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<cell alignment="center" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
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2254.541
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<cell alignment="center" valignment="top" usebox="none">
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-\begin_layout Standard
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<cell alignment="center" valignment="top" usebox="none">
\begin_inset Text
-\begin_layout Standard
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<cell alignment="center" valignment="top" usebox="none">
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-\begin_layout Standard
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<cell alignment="right" valignment="top" rightline="true" usebox="none">
\begin_inset Text
-\begin_layout Standard
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187.43
\end_layout
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</cell>
</row>
-<row topline="true">
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<cell alignment="right" valignment="top" topline="true" leftline="true" usebox="none">
\begin_inset Text
-\begin_layout Standard
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\begin_inset ERT
status collapsed
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<cell alignment="center" valignment="top" topline="true" usebox="none">
\begin_inset Text
-\begin_layout Standard
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@@ -17454,7 +17865,7 @@
<cell alignment="center" valignment="top" topline="true" usebox="none">
\begin_inset Text
-\begin_layout Standard
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<cell alignment="center" valignment="top" topline="true" usebox="none">
\begin_inset Text
-\begin_layout Standard
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This geometry is based on the subduction zone benchmark by
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This problem will not reproduce the exact result presented in
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because this version of ConMan does not have the discontinuous velocity
field, which turns out to be critical to match the benchmark results.
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59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
\series default
-\newline
+\begin_inset Newline newline
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Everyone is permitted to copy and distribute verbatim copies of this license
document, but changing it is not allowed.
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either verbatim or with modifications and/or translated into another language.
(Hereinafter, translation is included without limitation in the term "modificat
ion.") Each licensee is addressed as "you."
-\newline
+\begin_inset Newline newline
+\end_inset
+
-\newline
- Activities other than copying,
- distribution and modification are not covered by this License; they are
- outside its scope.
+\begin_inset Newline newline
+\end_inset
+
+ Activities other than copying, distribution and modification are not covered
+ by this License; they are outside its scope.
The act of running the Program is not restricted, and the output from the
Program is covered only if its contents constitute a work based on the
Program (independent of having been made by running the Program).
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+\begin_inset Newline newline
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+
1 April 1989
-\newline
+\begin_inset Newline newline
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Ty Coon, President of Vice
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key "Brooks and Hughes 1990"
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key "Malkus and Hughes 1978"
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key "Travis et al 1990"
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+\begin_inset CommandInset bibitem
+LatexCommand bibitem
label "11"
key "van Keken 1993"
@@ -20408,7 +20858,8 @@
\end_layout
\begin_layout Bibliography
-\begin_inset LatexCommand bibitem
+\begin_inset CommandInset bibitem
+LatexCommand bibitem
label "12"
key "van Keken et al 2008"
Modified: mc/2D/ConMan/trunk/visual/gmt/split_field_out
===================================================================
--- mc/2D/ConMan/trunk/visual/gmt/split_field_out 2009-03-26 18:28:00 UTC (rev 14469)
+++ mc/2D/ConMan/trunk/visual/gmt/split_field_out 2009-03-26 19:55:19 UTC (rev 14470)
@@ -9,6 +9,8 @@
if=field.$model # input file
op=grd.$model # output prefix
+#scale=2000 # for velocities
+scale=1500 # for velocities
tmpn=/tmp/$USER.$HOST.$$.torque_tmp # temp storage
trap "rm -f $tmpn.* ; exit" 0 1 2 15
@@ -21,18 +23,24 @@
echo $pname: cannot find conman field output $if
exit
fi
-
+#
+# extract parameters
+#
head -1 $if > $tmpn.dat
read nsd nx nz np nstep time < $tmpn.dat
+#
+# split the output file into separate files
+#
((nline=np+2))
-
split -d --suffix-length=5 --lines $nline $if $tmpn.t.
total_step=`ls $tmpn.t.* | wc -l`
echo $pname: determined $nstep timesteps in model $model
+
oc=0
-while [ $oc -lt $total_step ];do
+while [ $oc -lt $total_step ];do # loop through timesteps
+
tlabel=`echo $oc | gawk '{printf("%05i",$1)}'` # timelabel
fname=$tmpn.t.$tlabel
#echo $pname: working on $fname
@@ -48,7 +56,9 @@
reg=-R$xmin/$xmax/$ymin/$ymax
inc=`echo $xmin $xmax $nelx $ymin $ymax $nely | gawk '{printf("-I%.6f/%.6f",($2-$1)/($3),($5-$4)/($6))}'`
fi
+ #
# extract grids
+ #
tc=4
for t in vx vy t;do
ofile=$op.$t.$tlabel
@@ -58,17 +68,21 @@
done
if [ $plot -gt 1 ];then
if [ $oc -eq 0 ];then
- makecpt -Cpolar -T0/1/.1 > $tmpn.cpt
+# makecpt -Cpolar -T0/1/.1 > $tmpn.cpt
+ makecpt -Cpolar -T0/1/.1 -Z > $tmpn.cpt
proj=-Jx3
fi
-
+ #
+ # create a plot with temperatures and velocities
+ #
ofile=$op.$tlabel.ps
- grdimage -C$tmpn.cpt $op.t.$tlabel -P $proj $reg -Ba.5f.05:"x":/a.5f.05:"z":WesN -K > $ofile
- grdvector $op.vx.$tlabel $op.vy.$tlabel $proj $reg -Q0.015/0.06/0.045 -N \
- -I0.2 -S2000 -O -K -Ggray -W0.5 >> $ofile
- psscale -N50 -D0.2/-.2/2/.2h -C$tmpn.cpt -B.25/:"T": -O >> $ofile
+ grdimage -C$tmpn.cpt $op.t.$tlabel -P $proj $reg -Ba.5f.05:"x":/a.5f.05:"z":wESn -K > $ofile
+ grdvector $op.vx.$tlabel $op.vy.$tlabel $proj $reg -Q0.03/0.06/0.045n.05 -N \
+ -I0.2 -S$scale -O -K -Ggray -W0.5 >> $ofile
+ psscale -N50 -D-0.85/1.4/2.5/.2 -C$tmpn.cpt -B.25/:"T": -O >> $ofile
echo $pname: written to $ofile
if [ $plot -eq 3 ];then # convert
+# gv $ofile
echo $pname: converting to $op.$tlabel.gif, deleting PS
/usr/bin/convert $ofile $op.$tlabel.gif
rm $ofile
@@ -80,7 +94,8 @@
((oc=oc+1))
done
-if [ $plot -eq 3 ];then # combine to movie
+if [ $plot -eq 3 ];then # combine several GIF files to a movie
+ xv *.gif
gifsicle $op.*.gif > $model.movie.gif
rm $op.*.gif
echo $pname: output in $model.movie.gif
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