[cig-commits] r14916 - in short/2.5D/benchmarks/savageprescott: meshes parameters

[willic3 at geodynamics.org]

Author: willic3
Date: 2009-05-07 09:45:27 -0700 (Thu, 07 May 2009)
New Revision: 14916

Modified:
   short/2.5D/benchmarks/savageprescott/meshes/spbm_hex8_graded3_20km.exo.gz
   short/2.5D/benchmarks/savageprescott/meshes/spbm_hex8_graded3_20km.jou
   short/2.5D/benchmarks/savageprescott/parameters/pylithapp.cfg
   short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_graded1_20km.cfg
   short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_graded2_20km.cfg
   short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_graded3_20km.cfg
   short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_graded4_20km.cfg
   short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_graded5_20km.cfg
   short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_unif1_20km.cfg
   short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_unif2_20km.cfg
   short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_unif3_20km.cfg
   short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_unif4_20km.cfg
Log:
Updated all parameters for new, SWIGified PyLith.
Fixed graded3 mesh to avoid weird jump in refinement.



Modified: short/2.5D/benchmarks/savageprescott/meshes/spbm_hex8_graded3_20km.exo.gz
===================================================================
(Binary files differ)

Modified: short/2.5D/benchmarks/savageprescott/meshes/spbm_hex8_graded3_20km.jou
===================================================================
--- short/2.5D/benchmarks/savageprescott/meshes/spbm_hex8_graded3_20km.jou	2009-05-07 04:02:55 UTC (rev 14915)
+++ short/2.5D/benchmarks/savageprescott/meshes/spbm_hex8_graded3_20km.jou	2009-05-07 16:45:27 UTC (rev 14916)
@@ -79,7 +79,7 @@
 # ----------------------------------------------------------------------
 # Refine region inside inner box.
 # ----------------------------------------------------------------------
-group "inner_box" add hex with x_coord > -250000.0 and with x_coord < 250000.0 and with y_coord > -125000.0 and with y_coord < 125000.0 and with z_coord > -100000.0
+group "inner_box" add hex with x_coord > -240000.0 and with x_coord < 240000.0 and with y_coord > -120000.0 and with y_coord < 120000.0 and with z_coord > -100000.0
 refine hex in inner_box depth 0
 
 # ----------------------------------------------------------------------

Modified: short/2.5D/benchmarks/savageprescott/parameters/pylithapp.cfg
===================================================================
--- short/2.5D/benchmarks/savageprescott/parameters/pylithapp.cfg	2009-05-07 04:02:55 UTC (rev 14915)
+++ short/2.5D/benchmarks/savageprescott/parameters/pylithapp.cfg	2009-05-07 16:45:27 UTC (rev 14916)
@@ -31,7 +31,7 @@
 [pylithapp.mesh_generator]
 #debug = 1   ; uncomment to get very verbose mesh information
 
-[pylithapp.mesh_generator.importer]
+[pylithapp.mesh_generator.reader]
 coordsys.space_dim = 3
 
 # ----------------------------------------------------------------------
@@ -54,16 +54,14 @@
 [pylithapp.timedependent.materials.elastic]
 label = Upper elastic layer
 id = 1
-db.iohandler.filename = mat_elastic.spatialdb
-quadrature = pylith.feassemble.quadrature.Quadrature3D
+properties_db.iohandler.filename = mat_elastic.spatialdb
 quadrature.cell = pylith.feassemble.FIATLagrange
 quadrature.cell.dimension = 3
 
 [pylithapp.timedependent.materials.maxwell]
 label = Lower Maxwell material
 id = 2
-db.iohandler.filename = mat_maxwell.spatialdb
-quadrature = pylith.feassemble.quadrature.Quadrature3D
+properties_db.iohandler.filename = mat_maxwell.spatialdb
 quadrature.cell = pylith.feassemble.FIATLagrange
 quadrature.cell.dimension = 3
 output.cell_data_fields = [total_strain,viscous_strain,stress]

Modified: short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_graded1_20km.cfg
===================================================================
--- short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_graded1_20km.cfg	2009-05-07 04:02:55 UTC (rev 14915)
+++ short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_graded1_20km.cfg	2009-05-07 16:45:27 UTC (rev 14916)
@@ -14,10 +14,10 @@
 # mesh_generator
 # ----------------------------------------------------------------------
 [pylithapp.mesh_generator]
-# Change the mesh importer to the CUBIT importer.
-importer = pylith.meshio.MeshIOCubit
+# Change the mesh importer to the CUBIT reader.
+reader = pylith.meshio.MeshIOCubit
 
-[pylithapp.mesh_generator.importer]
+[pylithapp.mesh_generator.reader]
 # Set filename of mesh to import.
 filename = ../meshes/spbm_hex8_graded1_20km.exo
 
@@ -96,7 +96,6 @@
 
 [pylithapp.timedependent.interfaces.fault]
 label = 10
-quadrature = pylith.feassemble.quadrature.Quadrature2Din3D
 quadrature.cell = pylith.feassemble.FIATLagrange
 quadrature.cell.dimension = 2
 mat_db.iohandler.filename = mat_elastic.spatialdb
@@ -125,13 +124,13 @@
 
 # Give basename for VTK output of state variables.
 [pylithapp.timedependent.materials.elastic.output]
-cell_filter = pylith.meshio.CellFilterAvg
+cell_filter = pylith.meshio.CellFilterAvgMesh
 writer.filename = ../results/spbm_hex8_graded1_20km/spbm_hex8_graded1_20km-statevars-elastic.vtk
 writer.time_format = %04.0f
 writer.time_constant = 1.0*year
 
 [pylithapp.timedependent.materials.maxwell.output]
-cell_filter = pylith.meshio.CellFilterAvg
+cell_filter = pylith.meshio.CellFilterAvgMesh
 writer.filename = ../results/spbm_hex8_graded1_20km/spbm_hex8_graded1_20km-statevars-maxwell.vtk
 writer.time_format = %04.0f
 writer.time_constant = 1.0*year

Modified: short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_graded2_20km.cfg
===================================================================
--- short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_graded2_20km.cfg	2009-05-07 04:02:55 UTC (rev 14915)
+++ short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_graded2_20km.cfg	2009-05-07 16:45:27 UTC (rev 14916)
@@ -14,10 +14,10 @@
 # mesh_generator
 # ----------------------------------------------------------------------
 [pylithapp.mesh_generator]
-# Change the mesh importer to the CUBIT importer.
-importer = pylith.meshio.MeshIOCubit
+# Change the mesh reader to the CUBIT reader.
+reader = pylith.meshio.MeshIOCubit
 
-[pylithapp.mesh_generator.importer]
+[pylithapp.mesh_generator.reader]
 # Set filename of mesh to import.
 filename = ../meshes/spbm_hex8_graded2_20km.exo
 
@@ -96,7 +96,6 @@
 
 [pylithapp.timedependent.interfaces.fault]
 label = 10
-quadrature = pylith.feassemble.quadrature.Quadrature2Din3D
 quadrature.cell = pylith.feassemble.FIATLagrange
 quadrature.cell.dimension = 2
 mat_db.iohandler.filename = mat_elastic.spatialdb
@@ -125,13 +124,13 @@
 
 # Give basename for VTK output of state variables.
 [pylithapp.timedependent.materials.elastic.output]
-cell_filter = pylith.meshio.CellFilterAvg
+cell_filter = pylith.meshio.CellFilterAvgMesh
 writer.filename = ../results/spbm_hex8_graded2_20km/spbm_hex8_graded2_20km-statevars-elastic.vtk
 writer.time_format = %04.0f
 writer.time_constant = 1.0*year
 
 [pylithapp.timedependent.materials.maxwell.output]
-cell_filter = pylith.meshio.CellFilterAvg
+cell_filter = pylith.meshio.CellFilterAvgMesh
 writer.filename = ../results/spbm_hex8_graded2_20km/spbm_hex8_graded2_20km-statevars-maxwell.vtk
 writer.time_format = %04.0f
 writer.time_constant = 1.0*year

Modified: short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_graded3_20km.cfg
===================================================================
--- short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_graded3_20km.cfg	2009-05-07 04:02:55 UTC (rev 14915)
+++ short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_graded3_20km.cfg	2009-05-07 16:45:27 UTC (rev 14916)
@@ -14,10 +14,10 @@
 # mesh_generator
 # ----------------------------------------------------------------------
 [pylithapp.mesh_generator]
-# Change the mesh importer to the CUBIT importer.
-importer = pylith.meshio.MeshIOCubit
+# Change the mesh reader to the CUBIT reader.
+reader = pylith.meshio.MeshIOCubit
 
-[pylithapp.mesh_generator.importer]
+[pylithapp.mesh_generator.reader]
 # Set filename of mesh to import.
 filename = ../meshes/spbm_hex8_graded3_20km.exo
 
@@ -96,7 +96,6 @@
 
 [pylithapp.timedependent.interfaces.fault]
 label = 10
-quadrature = pylith.feassemble.quadrature.Quadrature2Din3D
 quadrature.cell = pylith.feassemble.FIATLagrange
 quadrature.cell.dimension = 2
 mat_db.iohandler.filename = mat_elastic.spatialdb
@@ -125,13 +124,13 @@
 
 # Give basename for VTK output of state variables.
 [pylithapp.timedependent.materials.elastic.output]
-cell_filter = pylith.meshio.CellFilterAvg
+cell_filter = pylith.meshio.CellFilterAvgMesh
 writer.filename = ../results/spbm_hex8_graded3_20km/spbm_hex8_graded3_20km-statevars-elastic.vtk
 writer.time_format = %04.0f
 writer.time_constant = 1.0*year
 
 [pylithapp.timedependent.materials.maxwell.output]
-cell_filter = pylith.meshio.CellFilterAvg
+cell_filter = pylith.meshio.CellFilterAvgMesh
 writer.filename = ../results/spbm_hex8_graded3_20km/spbm_hex8_graded3_20km-statevars-maxwell.vtk
 writer.time_format = %04.0f
 writer.time_constant = 1.0*year

Modified: short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_graded4_20km.cfg
===================================================================
--- short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_graded4_20km.cfg	2009-05-07 04:02:55 UTC (rev 14915)
+++ short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_graded4_20km.cfg	2009-05-07 16:45:27 UTC (rev 14916)
@@ -14,10 +14,10 @@
 # mesh_generator
 # ----------------------------------------------------------------------
 [pylithapp.mesh_generator]
-# Change the mesh importer to the CUBIT importer.
-importer = pylith.meshio.MeshIOCubit
+# Change the mesh reader to the CUBIT reader.
+reader = pylith.meshio.MeshIOCubit
 
-[pylithapp.mesh_generator.importer]
+[pylithapp.mesh_generator.reader]
 # Set filename of mesh to import.
 filename = ../meshes/spbm_hex8_graded4_20km.exo
 
@@ -96,7 +96,6 @@
 
 [pylithapp.timedependent.interfaces.fault]
 label = 10
-quadrature = pylith.feassemble.quadrature.Quadrature2Din3D
 quadrature.cell = pylith.feassemble.FIATLagrange
 quadrature.cell.dimension = 2
 mat_db.iohandler.filename = mat_elastic.spatialdb
@@ -125,13 +124,13 @@
 
 # Give basename for VTK output of state variables.
 [pylithapp.timedependent.materials.elastic.output]
-cell_filter = pylith.meshio.CellFilterAvg
+cell_filter = pylith.meshio.CellFilterAvgMesh
 writer.filename = ../results/spbm_hex8_graded4_20km/spbm_hex8_graded4_20km-statevars-elastic.vtk
 writer.time_format = %04.0f
 writer.time_constant = 1.0*year
 
 [pylithapp.timedependent.materials.maxwell.output]
-cell_filter = pylith.meshio.CellFilterAvg
+cell_filter = pylith.meshio.CellFilterAvgMesh
 writer.filename = ../results/spbm_hex8_graded4_20km/spbm_hex8_graded4_20km-statevars-maxwell.vtk
 writer.time_format = %04.0f
 writer.time_constant = 1.0*year

Modified: short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_graded5_20km.cfg
===================================================================
--- short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_graded5_20km.cfg	2009-05-07 04:02:55 UTC (rev 14915)
+++ short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_graded5_20km.cfg	2009-05-07 16:45:27 UTC (rev 14916)
@@ -14,10 +14,10 @@
 # mesh_generator
 # ----------------------------------------------------------------------
 [pylithapp.mesh_generator]
-# Change the mesh importer to the CUBIT importer.
-importer = pylith.meshio.MeshIOCubit
+# Change the mesh reader to the CUBIT reader.
+reader = pylith.meshio.MeshIOCubit
 
-[pylithapp.mesh_generator.importer]
+[pylithapp.mesh_generator.reader]
 # Set filename of mesh to import.
 filename = ../meshes/spbm_hex8_graded5_20km.exo
 
@@ -96,7 +96,6 @@
 
 [pylithapp.timedependent.interfaces.fault]
 label = 10
-quadrature = pylith.feassemble.quadrature.Quadrature2Din3D
 quadrature.cell = pylith.feassemble.FIATLagrange
 quadrature.cell.dimension = 2
 mat_db.iohandler.filename = mat_elastic.spatialdb
@@ -125,13 +124,13 @@
 
 # Give basename for VTK output of state variables.
 [pylithapp.timedependent.materials.elastic.output]
-cell_filter = pylith.meshio.CellFilterAvg
+cell_filter = pylith.meshio.CellFilterAvgMesh
 writer.filename = ../results/spbm_hex8_graded5_20km/spbm_hex8_graded5_20km-statevars-elastic.vtk
 writer.time_format = %04.0f
 writer.time_constant = 1.0*year
 
 [pylithapp.timedependent.materials.maxwell.output]
-cell_filter = pylith.meshio.CellFilterAvg
+cell_filter = pylith.meshio.CellFilterAvgMesh
 writer.filename = ../results/spbm_hex8_graded5_20km/spbm_hex8_graded5_20km-statevars-maxwell.vtk
 writer.time_format = %04.0f
 writer.time_constant = 1.0*year

Modified: short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_unif1_20km.cfg
===================================================================
--- short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_unif1_20km.cfg	2009-05-07 04:02:55 UTC (rev 14915)
+++ short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_unif1_20km.cfg	2009-05-07 16:45:27 UTC (rev 14916)
@@ -14,10 +14,10 @@
 # mesh_generator
 # ----------------------------------------------------------------------
 [pylithapp.mesh_generator]
-# Change the mesh importer to the CUBIT importer.
-importer = pylith.meshio.MeshIOCubit
+# Change the mesh reader to the CUBIT reader.
+reader = pylith.meshio.MeshIOCubit
 
-[pylithapp.mesh_generator.importer]
+[pylithapp.mesh_generator.reader]
 # Set filename of mesh to import.
 filename = ../meshes/spbm_hex8_unif1_20km.exo
 
@@ -96,7 +96,6 @@
 
 [pylithapp.timedependent.interfaces.fault]
 label = 10
-quadrature = pylith.feassemble.quadrature.Quadrature2Din3D
 quadrature.cell = pylith.feassemble.FIATLagrange
 quadrature.cell.dimension = 2
 mat_db.iohandler.filename = mat_elastic.spatialdb
@@ -125,13 +124,13 @@
 
 # Give basename for VTK output of state variables.
 [pylithapp.timedependent.materials.elastic.output]
-cell_filter = pylith.meshio.CellFilterAvg
+cell_filter = pylith.meshio.CellFilterAvgMesh
 writer.filename = ../results/spbm_hex8_unif1_20km/spbm_hex8_unif1_20km-statevars-elastic.vtk
 writer.time_format = %04.0f
 writer.time_constant = 1.0*year
 
 [pylithapp.timedependent.materials.maxwell.output]
-cell_filter = pylith.meshio.CellFilterAvg
+cell_filter = pylith.meshio.CellFilterAvgMesh
 writer.filename = ../results/spbm_hex8_unif1_20km/spbm_hex8_unif1_20km-statevars-maxwell.vtk
 writer.time_format = %04.0f
 writer.time_constant = 1.0*year

Modified: short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_unif2_20km.cfg
===================================================================
--- short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_unif2_20km.cfg	2009-05-07 04:02:55 UTC (rev 14915)
+++ short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_unif2_20km.cfg	2009-05-07 16:45:27 UTC (rev 14916)
@@ -14,10 +14,10 @@
 # mesh_generator
 # ----------------------------------------------------------------------
 [pylithapp.mesh_generator]
-# Change the mesh importer to the CUBIT importer.
-importer = pylith.meshio.MeshIOCubit
+# Change the mesh reader to the CUBIT reader.
+reader = pylith.meshio.MeshIOCubit
 
-[pylithapp.mesh_generator.importer]
+[pylithapp.mesh_generator.reader]
 # Set filename of mesh to import.
 filename = ../meshes/spbm_hex8_unif2_20km.exo
 
@@ -96,7 +96,6 @@
 
 [pylithapp.timedependent.interfaces.fault]
 label = 10
-quadrature = pylith.feassemble.quadrature.Quadrature2Din3D
 quadrature.cell = pylith.feassemble.FIATLagrange
 quadrature.cell.dimension = 2
 mat_db.iohandler.filename = mat_elastic.spatialdb
@@ -125,13 +124,13 @@
 
 # Give basename for VTK output of state variables.
 [pylithapp.timedependent.materials.elastic.output]
-cell_filter = pylith.meshio.CellFilterAvg
+cell_filter = pylith.meshio.CellFilterAvgMesh
 writer.filename = ../results/spbm_hex8_unif2_20km/spbm_hex8_unif2_20km-statevars-elastic.vtk
 writer.time_format = %04.0f
 writer.time_constant = 1.0*year
 
 [pylithapp.timedependent.materials.maxwell.output]
-cell_filter = pylith.meshio.CellFilterAvg
+cell_filter = pylith.meshio.CellFilterAvgMesh
 writer.filename = ../results/spbm_hex8_unif2_20km/spbm_hex8_unif2_20km-statevars-maxwell.vtk
 writer.time_format = %04.0f
 writer.time_constant = 1.0*year

Modified: short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_unif3_20km.cfg
===================================================================
--- short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_unif3_20km.cfg	2009-05-07 04:02:55 UTC (rev 14915)
+++ short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_unif3_20km.cfg	2009-05-07 16:45:27 UTC (rev 14916)
@@ -14,10 +14,10 @@
 # mesh_generator
 # ----------------------------------------------------------------------
 [pylithapp.mesh_generator]
-# Change the mesh importer to the CUBIT importer.
-importer = pylith.meshio.MeshIOCubit
+# Change the mesh reader to the CUBIT reader.
+reader = pylith.meshio.MeshIOCubit
 
-[pylithapp.mesh_generator.importer]
+[pylithapp.mesh_generator.reader]
 # Set filename of mesh to import.
 filename = ../meshes/spbm_hex8_unif3_20km.exo
 
@@ -96,7 +96,6 @@
 
 [pylithapp.timedependent.interfaces.fault]
 label = 10
-quadrature = pylith.feassemble.quadrature.Quadrature2Din3D
 quadrature.cell = pylith.feassemble.FIATLagrange
 quadrature.cell.dimension = 2
 mat_db.iohandler.filename = mat_elastic.spatialdb
@@ -125,13 +124,13 @@
 
 # Give basename for VTK output of state variables.
 [pylithapp.timedependent.materials.elastic.output]
-cell_filter = pylith.meshio.CellFilterAvg
+cell_filter = pylith.meshio.CellFilterAvgMesh
 writer.filename = ../results/spbm_hex8_unif3_20km/spbm_hex8_unif3_20km-statevars-elastic.vtk
 writer.time_format = %04.0f
 writer.time_constant = 1.0*year
 
 [pylithapp.timedependent.materials.maxwell.output]
-cell_filter = pylith.meshio.CellFilterAvg
+cell_filter = pylith.meshio.CellFilterAvgMesh
 writer.filename = ../results/spbm_hex8_unif3_20km/spbm_hex8_unif3_20km-statevars-maxwell.vtk
 writer.time_format = %04.0f
 writer.time_constant = 1.0*year

Modified: short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_unif4_20km.cfg
===================================================================
--- short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_unif4_20km.cfg	2009-05-07 04:02:55 UTC (rev 14915)
+++ short/2.5D/benchmarks/savageprescott/parameters/spbm_hex8_unif4_20km.cfg	2009-05-07 16:45:27 UTC (rev 14916)
@@ -14,10 +14,10 @@
 # mesh_generator
 # ----------------------------------------------------------------------
 [pylithapp.mesh_generator]
-# Change the mesh importer to the CUBIT importer.
-importer = pylith.meshio.MeshIOCubit
+# Change the mesh reader to the CUBIT reader.
+reader = pylith.meshio.MeshIOCubit
 
-[pylithapp.mesh_generator.importer]
+[pylithapp.mesh_generator.reader]
 # Set filename of mesh to import.
 filename = ../meshes/spbm_hex8_unif4_20km.exo
 
@@ -96,7 +96,6 @@
 
 [pylithapp.timedependent.interfaces.fault]
 label = 10
-quadrature = pylith.feassemble.quadrature.Quadrature2Din3D
 quadrature.cell = pylith.feassemble.FIATLagrange
 quadrature.cell.dimension = 2
 mat_db.iohandler.filename = mat_elastic.spatialdb
@@ -125,13 +124,13 @@
 
 # Give basename for VTK output of state variables.
 [pylithapp.timedependent.materials.elastic.output]
-cell_filter = pylith.meshio.CellFilterAvg
+cell_filter = pylith.meshio.CellFilterAvgMesh
 writer.filename = ../results/spbm_hex8_unif4_20km/spbm_hex8_unif4_20km-statevars-elastic.vtk
 writer.time_format = %04.0f
 writer.time_constant = 1.0*year
 
 [pylithapp.timedependent.materials.maxwell.output]
-cell_filter = pylith.meshio.CellFilterAvg
+cell_filter = pylith.meshio.CellFilterAvgMesh
 writer.filename = ../results/spbm_hex8_unif4_20km/spbm_hex8_unif4_20km-statevars-maxwell.vtk
 writer.time_format = %04.0f
 writer.time_constant = 1.0*year