[cig-commits] r15651 - doc/snac

[sue at geodynamics.org]

Author: sue
Date: 2009-09-04 15:07:56 -0700 (Fri, 04 Sep 2009)
New Revision: 15651

Modified:
   doc/snac/snac.lyx
Log:
fixed typos, punc. other probs

Modified: doc/snac/snac.lyx
===================================================================
--- doc/snac/snac.lyx	2009-09-04 21:03:46 UTC (rev 15650)
+++ doc/snac/snac.lyx	2009-09-04 22:07:56 UTC (rev 15651)
@@ -1,4 +1,4 @@
-#LyX 1.6.2 created this file. For more info see http://www.lyx.org/
+#LyX 1.6.4.1 created this file. For more info see http://www.lyx.org/
 \lyxformat 345
 \begin_document
 \begin_header
@@ -5307,7 +5307,7 @@
 \end_layout
 
 \begin_layout Section
-Using condition functions
+Using Condition Functions
 \begin_inset CommandInset label
 LatexCommand label
 name "sec:Using-condition-functions"
@@ -5381,8 +5381,8 @@
 
 \begin_deeper
 \begin_layout Enumerate
-Copy and paste one of the existing function declarations and rename it.
- (e.g., 
+Copy and paste one of the existing function declarations and rename it (e.g.,
+ 
 \family typewriter
 void _SnacCondFunc_DeadSea
 \family default
@@ -5406,8 +5406,8 @@
 
 \begin_deeper
 \begin_layout Enumerate
-Copy and paste one of the existing function definitions and rename it.
- (e.g., 
+Copy and paste one of the existing function definitions and rename it (e.g.,
+ 
 \family typewriter
 void _SnacCondFunc_DeadSea(...)
 \family default
@@ -5423,8 +5423,7 @@
 \end_layout
 
 \begin_layout Enumerate
-Change the contents of the new function.
- (e.g., remove all the 
+Change the contents of the new function (e.g., remove all the 
 \family typewriter
 if
 \family default
@@ -5615,7 +5614,7 @@
 \family default
  parameter for the ``
 \family typewriter
-vairables
+variables
 \family default
 `` list should be changed from 
 \family typewriter
@@ -5760,7 +5759,7 @@
 
 \begin_layout Standard
 Run SNAC and check if the condition function works as intended by visualizing
- ``
+ the ``
 \family typewriter
 Phase
 \family default
@@ -5797,7 +5796,7 @@
  It is possible to checkpoint as a response to an emergency like receiving
  a certain type of error or disk quota and wall clock limit soon to be exceeded.
  However, SNAC currently only allows a user to specify the frequency of
- checkpointnig by assigning a non-zero value to 
+ checkpointing by assigning a non-zero value to 
 \begin_inset Quotes sld
 \end_inset
 
@@ -5829,7 +5828,7 @@
 .
  The default value of this parameter is 0, and SNAC checkpoints only at
  the last time step.
- Since the size of checkpoint data files are much larger than that of the
+ Since the size of checkpoint data files is much larger than that of the
  regular outputs, it is advised to set 
 \family typewriter
 checkpointEvery
@@ -5838,7 +5837,7 @@
 \end_layout
 
 \begin_layout Standard
-Like dumping is logged in 
+Just as dumping is logged in 
 \family typewriter
 timeStep.0
 \family default
@@ -5997,14 +5996,18 @@
 \end_layout
 
 \begin_layout Standard
-timeStep is one of the checkpointed time steps and should be one of those
- recorded in 
+
 \family typewriter
+timeStep
+\family default
+ is one of the checkpointed time steps and should be one of those recorded
+ in 
+\family typewriter
 checkpointTimeStep.0
 \family default
 .
- The last two specify a path to where your output files are which need processin
-g, and where to write the processed restart files, respectively.
+ The last two specify a path to where those output files are which need
+ processing, and where to write the processed restart files, respectively.
  All the arguments are optional and, by default, 
 \family typewriter
 snac2restart
@@ -6023,11 +6026,11 @@
 \end_layout
 
 \begin_layout Standard
-SNAC writes binary output files, and it is necessary to convert them to
- a file format that external visualization tools can handle.
- Two such converting programs are provided.
+SNAC writes binary output files which must be converted to a file format
+ that external visualization tools can handle.
+ Two such conversion programs are provided.
  One generates Visualization Tool Kit (VTK) files.
- The other is for the open source Open Visualization Data Explorer, better
+ The other is for the open-source Open Visualization Data Explorer, better
  known as OpenDX.
  There are several programs that can visualize VTK files: ParaView 
 \begin_inset Flex URL
@@ -6151,7 +6154,7 @@
 snac2vtk
 \family default
  automatically generates Parallel VTK Structured Grid files (.pvts) for each
- time step so that there is no need for an extra step to combine data even
+ time step so that there is no need for an extra step to combine data, even
  for the parallel cases.
  It is the group of .pvts files that needs to be loaded in ParaView or another
  visualization tool for VTK.
@@ -6382,11 +6385,11 @@
 sim.0
 \family default
  is ``25 15 20''.
- Then, we can infer that 2 processors were assigned in each dimension.
+ We can then infer that 2 processors were assigned in each dimension.
 \end_layout
 
 \begin_layout Standard
-To get a combined dx file for the time step 35:
+To get a combined dx file for time step 35:
 \end_layout
 
 \begin_layout LyX-Code
@@ -6403,7 +6406,7 @@
 \end_inset
 
 .
- ``
+ So ``
 \family typewriter
 snac.000035.dx
 \family default
@@ -8089,7 +8092,7 @@
 
 \end_inset
 
-Phase index map of Cookbook2 generated by the condition function 
+Phase index map of Cookbook 2 generated by the condition function 
 \family typewriter
 SnacCF_DeadSea
 \family default