[cig-commits] r16400 - in short/3D/PyLith/trunk/playpen/friction: . bar_shearwave/quad4

brad at geodynamics.org brad at geodynamics.org
Wed Mar 10 07:50:08 PST 2010


Author: brad
Date: 2010-03-10 07:50:08 -0800 (Wed, 10 Mar 2010)
New Revision: 16400

Added:
   short/3D/PyLith/trunk/playpen/friction/bar_shearwave/
Removed:
   short/3D/PyLith/trunk/playpen/friction/bar_shearwave/quad4/pylith_parameters.txt
   short/3D/PyLith/trunk/playpen/friction/bar_shearwave/quad4/shearwave_risetime.spatialdb
   short/3D/PyLith/trunk/playpen/friction/bar_shearwave/quad4/shearwave_slip.spatialdb
   short/3D/PyLith/trunk/playpen/friction/bar_shearwave/quad4/shearwave_sliptime.spatialdb
Log:
Cleanup and removed superfluous files.

Copied: short/3D/PyLith/trunk/playpen/friction/bar_shearwave (from rev 16399, short/3D/PyLith/trunk/playpen/friction/RateStateAgeing)

Deleted: short/3D/PyLith/trunk/playpen/friction/bar_shearwave/quad4/pylith_parameters.txt
===================================================================
--- short/3D/PyLith/trunk/playpen/friction/RateStateAgeing/quad4/pylith_parameters.txt	2010-03-10 01:25:11 UTC (rev 16399)
+++ short/3D/PyLith/trunk/playpen/friction/bar_shearwave/quad4/pylith_parameters.txt	2010-03-10 15:50:08 UTC (rev 16400)
@@ -1,238 +0,0 @@
-Application: pylithapp <pylith.apps.PyLithApp.InfoApp object at 0x48ee50>
-   nodes (int) = 1
-   job = job (<pyre.schedulers.Job.Job object at 0x3b56fb0>)
-      arguments (list) = []
-      comments (list) = []
-      environment (list) = []
-      executable (str) = 
-      mail (bool) = False
-      name (str) = 
-      queue (str) = 
-      stderr (str) = stderr.txt
-      stdin (str) = /dev/null
-      stdout (str) = stdout.txt
-      walltime (dimensional) = 0*s
-   launcher = mpich (<mpi.LauncherMPICH.LauncherMPICH object at 0x3b5c4d0>)
-      arguments (list) = []
-      command (str) = mpirun -np ${nodes}
-      dry (bool) = False
-      executable (str) = 
-      machinefile (str) = mpirun.nodes
-      nodegen (str) = 
-      nodelist (slice) = []
-      nodes (int) = 1
-   mesh_generator = meshimporter (<pylith.topology.MeshImporter.MeshImporter object at 0x3b3cc30>)
-      debug (bool) = False
-      interpolate (bool) = False
-      distributor = partitioner (<pylith.topology.Distributor.Distributor; proxy of <Swig Object of type 'pylith::topology::Distributor *' at 0x3b2f9c0> >)
-         debug (bool) = False
-         partitioner (str) = chaco
-         data_writer = datawritervtkmesh (<pylith.meshio.DataWriterVTKMesh.DataWriterVTKMesh; proxy of <Swig Object of type 'pylith::meshio::DataWriterVTK< pylith::topology::Mesh,pylith::topology::Field< pylith::topology::Mesh > > *' at 0x3b2ff40> >)
-            filename (str) = output.vtk
-            float_precision (int) = 6
-            time_constant (dimensional) = 1*s
-            time_format (str) = %f
-      reader = meshiocubit (<pylith.meshio.MeshIOCubit.MeshIOCubit; proxy of <Swig Object of type 'pylith::meshio::MeshIOCubit *' at 0x3b2ff00> >)
-         filename (str) = bar_quad4_200m.exo
-         coordsys = cscart (<spatialdata.geocoords.CSCart.CSCart; proxy of <Swig Object of type 'spatialdata::geocoords::CSCart *' at 0x3b2ff20> >)
-            space_dim (int) = 2
-            units (str) = m
-      refiner = refiner (<pylith.topology.MeshRefiner.MeshRefiner object at 0x3b6d950>)
-   perf_logger = memory_logger (<pylith.perf.MemoryLogger.MemoryLogger object at 0x3b56750>)
-      include_dealloc (bool) = True
-      verbose (bool) = False
-   petsc = petsc (<pylith.utils.PetscManager.PetscManager object at 0x3b56df0>)
-   problem = timedependent (<pylith.problems.TimeDependent.TimeDependent object at 0x3b56850>)
-      dimension (int) = 2
-      bc = bc (<pyre.inventory.FacilityArrayFacility.FacilityArray object at 0x3b9c770>)
-         x_neg = absorbingdampers (<pylith.bc.AbsorbingDampers.AbsorbingDampers; proxy of <Swig Object of type 'pylith::bc::AbsorbingDampers *' at 0x3b2f9c0> >)
-            label (str) = 12
-            up_dir (list) = [0, 0, 1]
-            db = simpledb (<spatialdata.spatialdb.SimpleDB.SimpleDB; proxy of <Swig Object of type 'spatialdata::spatialdb::SimpleDB *' at 0x3b2fbe0> >)
-               label (str) = Absorbing BC -x
-               query_type (str) = nearest
-               iohandler = simpleioascii (<spatialdata.spatialdb.SimpleIOAscii.SimpleIOAscii; proxy of <Swig Object of type 'spatialdata::spatialdb::SimpleIOAscii *' at 0x3b2fc80> >)
-                  filename (str) = matprops.spatialdb
-            perf_logger = memory_logger (<pylith.perf.MemoryLogger.MemoryLogger object at 0x3c315d0>)
-               include_dealloc (bool) = True
-               verbose (bool) = False
-            quadrature = submeshquadrature (<pylith.feassemble.Quadrature.SubMeshQuadrature; proxy of <Swig Object of type 'pylith::feassemble::Quadrature< pylith::topology::SubMesh > *' at 0x3b2fc80> >)
-               check_conditioning (bool) = False
-               min_jacobian (float) = 1e-06
-               cell = fiatlagrange (<pylith.feassemble.FIATLagrange.FIATLagrange object at 0x3cac090>)
-                  degree (int) = 1
-                  dimension (int) = 1
-                  quad_order (int) = 2
-         x_pos = absorbingdampers (<pylith.bc.AbsorbingDampers.AbsorbingDampers; proxy of <Swig Object of type 'pylith::bc::AbsorbingDampers *' at 0x3b2fc80> >)
-            label (str) = 11
-            up_dir (list) = [0, 0, 1]
-            db = simpledb (<spatialdata.spatialdb.SimpleDB.SimpleDB; proxy of <Swig Object of type 'spatialdata::spatialdb::SimpleDB *' at 0x3b2fbe0> >)
-               label (str) = Absorbing BC +x
-               query_type (str) = nearest
-               iohandler = simpleioascii (<spatialdata.spatialdb.SimpleIOAscii.SimpleIOAscii; proxy of <Swig Object of type 'spatialdata::spatialdb::SimpleIOAscii *' at 0x3b2ff20> >)
-                  filename (str) = matprops.spatialdb
-            perf_logger = memory_logger (<pylith.perf.MemoryLogger.MemoryLogger object at 0x3cc4110>)
-               include_dealloc (bool) = True
-               verbose (bool) = False
-            quadrature = submeshquadrature (<pylith.feassemble.Quadrature.SubMeshQuadrature; proxy of <Swig Object of type 'pylith::feassemble::Quadrature< pylith::topology::SubMesh > *' at 0x3b2ff20> >)
-               check_conditioning (bool) = False
-               min_jacobian (float) = 1e-06
-               cell = fiatlagrange (<pylith.feassemble.FIATLagrange.FIATLagrange object at 0x3cc4650>)
-                  degree (int) = 1
-                  dimension (int) = 1
-                  quad_order (int) = 2
-         y_pos = dirichletbc (<pylith.bc.DirichletBC.DirichletBC; proxy of <Swig Object of type 'pylith::bc::DirichletBC *' at 0x3b2ff20> >)
-            bc_dof (list) = [0]
-            label (str) = 13
-            up_dir (list) = [0, 0, 1]
-            db_change = nullcomponent (<pylith.utils.NullComponent.NullComponent object at 0x3cd0670>)
-            db_initial = zerodispdb (<pylith.bc.ZeroDispDB.ZeroDispDB; proxy of <Swig Object of type 'spatialdata::spatialdb::UniformDB *' at 0x3b2fbe0> >)
-               data (list) = []
-               label (str) = spatial database
-               values (list) = []
-            db_rate = nullcomponent (<pylith.utils.NullComponent.NullComponent object at 0x3cd0570>)
-            perf_logger = memory_logger (<pylith.perf.MemoryLogger.MemoryLogger object at 0x3cd07b0>)
-               include_dealloc (bool) = True
-               verbose (bool) = False
-            th_change = nullcomponent (<pylith.utils.NullComponent.NullComponent object at 0x3cd0710>)
-      checkpoint = checkpointtimer (<pylith.utils.CheckpointTimer.CheckpointTimer object at 0x3b93490>)
-         dt (dimensional) = 9.9e+99*s
-      formulation = explicit (<pylith.problems.Explicit.Explicit; proxy of <Swig Object of type 'pylith::problems::Explicit *' at 0x3b2fce0> >)
-         matrix_type (str) = unknown
-         split_fields (bool) = False
-         view_jacobian (bool) = False
-         jacobian_viewer = formulation (<pylith.topology.JacobianViewer.JacobianViewer object at 0x3d560b0>)
-            filename (str) = jacobian.mat
-            time_constant (dimensional) = 1*s
-            time_format (str) = %f
-         output = singleoutput (<pylith.meshio.SingleOutput.SingleOutput object at 0x3d562d0>)
-            output = outputsoln (<pylith.meshio.OutputSoln.OutputSoln; proxy of <Swig Object of type 'pylith::meshio::OutputManager< pylith::topology::Mesh,pylith::topology::Field< pylith::topology::Mesh > > *' at 0x3b2fc80> >)
-               cell_info_fields (list) = []
-               output_freq (str) = skip
-               skip (int) = 3
-               time_step (dimensional) = 1*s
-               vertex_data_fields (list) = ['displacement']
-               cell_filter = nullcomponent (<pylith.utils.NullComponent.NullComponent object at 0x3d63690>)
-               coordsys = cscart (<spatialdata.geocoords.CSCart.CSCart; proxy of <Swig Object of type 'spatialdata::geocoords::CSCart *' at 0x3b2f3c0> >)
-                  space_dim (int) = 3
-                  units (str) = m
-               perf_logger = memory_logger (<pylith.perf.MemoryLogger.MemoryLogger object at 0x3d635d0>)
-                  include_dealloc (bool) = True
-                  verbose (bool) = False
-               vertex_filter = nullcomponent (<pylith.utils.NullComponent.NullComponent object at 0x3d637f0>)
-               writer = datawritervtkmesh (<pylith.meshio.DataWriterVTKMesh.DataWriterVTKMesh; proxy of <Swig Object of type 'pylith::meshio::DataWriterVTK< pylith::topology::Mesh,pylith::topology::Field< pylith::topology::Mesh > > *' at 0x3b2fdc0> >)
-                  filename (str) = output/shearwave.vtk
-                  float_precision (int) = 6
-                  time_constant (dimensional) = 1*s
-                  time_format (str) = %05.2f
-         perf_logger = memory_logger (<pylith.perf.MemoryLogger.MemoryLogger object at 0x3d4dff0>)
-            include_dealloc (bool) = True
-            verbose (bool) = False
-         solver = solvernonlinear (<pylith.problems.SolverNonlinear.SolverNonlinear; proxy of <Swig Object of type 'pylith::problems::SolverNonlinear *' at 0x3b2fc40> >)
-         time_step = timestepuniform (<pylith.problems.TimeStepUniform.TimeStepUniform object at 0x3d4d890>)
-            dt (dimensional) = 0.05*s
-            total_time (dimensional) = 2*s
-      gravity_field = nullcomponent (<pylith.utils.NullComponent.NullComponent object at 0x3b93c50>)
-      interfaces = interfaces (<pyre.inventory.FacilityArrayFacility.FacilityArray object at 0x3bbd1f0>)
-         fault = faultcohesivedynl (<pylith.faults.FaultCohesiveDyn.FaultCohesiveDyn; proxy of <Swig Object of type 'pylith::faults::FaultCohesiveDyn *' at 0x3b2f660> >)
-            fault_mesh_filename (str) = fault.inp
-            id (int) = 100
-            label (str) = 10
-            normal_dir (list) = [1.0, 0.0, 0.0]
-            up_dir (list) = [0.0, 0.0, 1.0]
-            use_fault_mesh (bool) = False
-            db_initial_tractions = uniformdb (<spatialdata.spatialdb.UniformDB.UniformDB; proxy of <Swig Object of type 'spatialdata::spatialdb::UniformDB *' at 0x3b2f340> >)
-               data (list) = ['7000.0*MPa', ' -10000.0*MPa']
-               label (str) = Initial fault tractions
-               values (list) = ['traction-shear', 'traction-normal']
-            friction = staticfriction (<pylith.friction.StaticFriction.StaticFriction; proxy of <Swig Object of type 'pylith::friction::StaticFriction *' at 0x3b2fca0> >)
-               label (str) = 
-               db_initial_state = nullcomponent (<pylith.utils.NullComponent.NullComponent object at 0x3d0f130>)
-               db_properties = uniformdb (<spatialdata.spatialdb.UniformDB.UniformDB; proxy of <Swig Object of type 'spatialdata::spatialdb::UniformDB *' at 0x3b2f660> >)
-                  data (list) = ['0.6*m']
-                  label (str) = Static friction
-                  values (list) = ['friction-coefficient']
-               perf_logger = memory_logger (<pylith.perf.MemoryLogger.MemoryLogger object at 0x3d0f450>)
-                  include_dealloc (bool) = True
-                  verbose (bool) = False
-            output = outputfaultdyn (<pylith.meshio.OutputFaultDyn.OutputFaultDyn; proxy of <Swig Object of type 'pylith::meshio::OutputManager< pylith::topology::SubMesh,pylith::topology::Field< pylith::topology::SubMesh > > *' at 0x3b2f340> >)
-               output_freq (str) = skip
-               skip (int) = 3
-               time_step (dimensional) = 1*s
-               vertex_data_fields (list) = ['slip', 'traction']
-               vertex_info_fields (list) = ['normal_dir']
-               cell_filter = nullcomponent (<pylith.utils.NullComponent.NullComponent object at 0x3cf7950>)
-               coordsys = cscart (<spatialdata.geocoords.CSCart.CSCart; proxy of <Swig Object of type 'spatialdata::geocoords::CSCart *' at 0x3b2fbc0> >)
-                  space_dim (int) = 3
-                  units (str) = m
-               perf_logger = memory_logger (<pylith.perf.MemoryLogger.MemoryLogger object at 0x3cf7890>)
-                  include_dealloc (bool) = True
-                  verbose (bool) = False
-               vertex_filter = nullcomponent (<pylith.utils.NullComponent.NullComponent object at 0x3cf7c30>)
-               writer = datawritervtksubmesh (<pylith.meshio.DataWriterVTKSubSubMesh.DataWriterVTKSubSubMesh; proxy of <Swig Object of type 'pylith::meshio::DataWriterVTK< pylith::topology::SubMesh,pylith::topology::Field< pylith::topology::SubMesh > > *' at 0x3b2f100> >)
-                  filename (str) = output/shearwave-fault.vtk
-                  float_precision (int) = 6
-                  time_constant (dimensional) = 1*s
-                  time_format (str) = %05.2f
-            perf_logger = memory_logger (<pylith.perf.MemoryLogger.MemoryLogger object at 0x3cf7350>)
-               include_dealloc (bool) = True
-               verbose (bool) = False
-            quadrature = submeshquadrature (<pylith.feassemble.Quadrature.SubMeshQuadrature; proxy of <Swig Object of type 'pylith::feassemble::Quadrature< pylith::topology::SubMesh > *' at 0x3b2f960> >)
-               check_conditioning (bool) = False
-               min_jacobian (float) = 1e-06
-               cell = fiatlagrange (<pylith.feassemble.FIATLagrange.FIATLagrange object at 0x3d03cd0>)
-                  degree (int) = 1
-                  dimension (int) = 1
-                  quad_order (int) = 2
-      materials = materials (<pyre.inventory.FacilityArrayFacility.FacilityArray object at 0x3c22370>)
-         elastic = elasticplanestrain (<pylith.materials.ElasticPlaneStrain.ElasticPlaneStrain; proxy of <Swig Object of type 'pylith::materials::ElasticPlaneStrain *' at 0x3b2f960> >)
-            id (int) = 1
-            label (str) = Elastic material
-            db_initial_state = nullcomponent (<pylith.utils.NullComponent.NullComponent object at 0x3d22dd0>)
-            db_initial_strain = nullcomponent (<pylith.utils.NullComponent.NullComponent object at 0x3d22f10>)
-            db_initial_stress = nullcomponent (<pylith.utils.NullComponent.NullComponent object at 0x3d22d30>)
-            db_properties = simpledb (<spatialdata.spatialdb.SimpleDB.SimpleDB; proxy of <Swig Object of type 'spatialdata::spatialdb::SimpleDB *' at 0x3b2f660> >)
-               label (str) = spatial database
-               query_type (str) = nearest
-               iohandler = simpleioascii (<spatialdata.spatialdb.SimpleIOAscii.SimpleIOAscii; proxy of <Swig Object of type 'spatialdata::spatialdb::SimpleIOAscii *' at 0x3b2f3a0> >)
-                  filename (str) = matprops.spatialdb
-            output = outputmatelastic (<pylith.meshio.OutputMatElastic.OutputMatElastic; proxy of <Swig Object of type 'pylith::meshio::OutputManager< pylith::topology::Mesh,pylith::topology::Field< pylith::topology::Mesh > > *' at 0x3b2f3a0> >)
-               cell_data_fields (list) = ['total_strain', 'stress']
-               cell_info_fields (list) = ['mu', 'lambda', 'density']
-               output_freq (str) = skip
-               skip (int) = 33
-               time_step (dimensional) = 1*s
-               cell_filter = cellfilteravgmesh (<pylith.meshio.CellFilterAvgMesh.CellFilterAvgMesh; proxy of <Swig Object of type 'pylith::meshio::CellFilterAvg< pylith::topology::Mesh,pylith::topology::Field< pylith::topology::Mesh > > *' at 0x3b2f980> >)
-                  perf_logger = memory_logger (<pylith.perf.MemoryLogger.MemoryLogger object at 0x3d42810>)
-                     include_dealloc (bool) = True
-                     verbose (bool) = False
-               coordsys = cscart (<spatialdata.geocoords.CSCart.CSCart; proxy of <Swig Object of type 'spatialdata::geocoords::CSCart *' at 0x3b2f3a0> >)
-                  space_dim (int) = 3
-                  units (str) = m
-               perf_logger = memory_logger (<pylith.perf.MemoryLogger.MemoryLogger object at 0x3d3c390>)
-                  include_dealloc (bool) = True
-                  verbose (bool) = False
-               vertex_filter = nullcomponent (<pylith.utils.NullComponent.NullComponent object at 0x3d3cdb0>)
-               writer = datawritervtkmesh (<pylith.meshio.DataWriterVTKMesh.DataWriterVTKMesh; proxy of <Swig Object of type 'pylith::meshio::DataWriterVTK< pylith::topology::Mesh,pylith::topology::Field< pylith::topology::Mesh > > *' at 0x3b2f980> >)
-                  filename (str) = output/shearwave-statevars.vtk
-                  float_precision (int) = 6
-                  time_constant (dimensional) = 1*s
-                  time_format (str) = %05.2f
-            perf_logger = memory_logger (<pylith.perf.MemoryLogger.MemoryLogger object at 0x3d22e70>)
-               include_dealloc (bool) = True
-               verbose (bool) = False
-            quadrature = meshquadrature (<pylith.feassemble.Quadrature.MeshQuadrature; proxy of <Swig Object of type 'pylith::feassemble::Quadrature< pylith::topology::Mesh > *' at 0x3b2f640> >)
-               check_conditioning (bool) = False
-               min_jacobian (float) = 1e-06
-               cell = fiatlagrange (<pylith.feassemble.FIATLagrange.FIATLagrange object at 0x3d29610>)
-                  degree (int) = 1
-                  dimension (int) = 2
-                  quad_order (int) = 2
-      normalizer = nondimelasticdynamic (<spatialdata.units.NondimElasticDynamic.NondimElasticDynamic; proxy of <Swig Object of type 'spatialdata::units::Nondimensional *' at 0x3b2f960> >)
-         mass_density (dimensional) = 3000*m**-3*kg
-         shear_wave_speed (dimensional) = 3000*m*s**-1
-         wave_period (dimensional) = 1*s
-   scheduler = scheduler-none (<pyre.schedulers.SchedulerNone.SchedulerNone object at 0x3b5cab0>)
-      dry (bool) = False
-      shell (str) = /bin/sh
-      wait (bool) = True

Deleted: short/3D/PyLith/trunk/playpen/friction/bar_shearwave/quad4/shearwave_risetime.spatialdb
===================================================================
--- short/3D/PyLith/trunk/playpen/friction/RateStateAgeing/quad4/shearwave_risetime.spatialdb	2010-03-10 01:25:11 UTC (rev 16399)
+++ short/3D/PyLith/trunk/playpen/friction/bar_shearwave/quad4/shearwave_risetime.spatialdb	2010-03-10 15:50:08 UTC (rev 16400)
@@ -1,25 +0,0 @@
-#SPATIAL.ascii 1
-SimpleDB {
-  // number of values for rise time
-  num-values = 1
-
-  // Name and units for rise time
-  value-names =  rise-time
-  value-units =  s
-
-  // Number of locations where physical properties are given
-  // 1 location -> data is uniform -> data dimension is 0
-  num-locs = 1
-  data-dim = 0
-
-  // Problem is in 2-D
-  space-dim = 2
-
-  // Coordinate system (2-D with coordinates in meters)
-  cs-data = cartesian {
-    to-meters = 1.0
-    space-dim = 2
-  }
-}
-// Columns are x, y, rise-time
-0.0  0.0    2.0

Deleted: short/3D/PyLith/trunk/playpen/friction/bar_shearwave/quad4/shearwave_slip.spatialdb
===================================================================
--- short/3D/PyLith/trunk/playpen/friction/RateStateAgeing/quad4/shearwave_slip.spatialdb	2010-03-10 01:25:11 UTC (rev 16399)
+++ short/3D/PyLith/trunk/playpen/friction/bar_shearwave/quad4/shearwave_slip.spatialdb	2010-03-10 15:50:08 UTC (rev 16400)
@@ -1,25 +0,0 @@
-#SPATIAL.ascii 1
-SimpleDB {
-  // number of values for final slip
-  num-values = 2
-
-  // Names and units of final slip values
-  value-names =  left-lateral-slip  fault-opening
-  value-units =  m  m
-
-  // Number of locations where physical properties are given
-  // 1 location -> data is uniform -> data dimension is 0
-  num-locs = 1
-  data-dim = 0
-
-  // Problem is in 2-D
-  space-dim = 2
-
-  // Coordinate system (2-D with coordinates in meters)
-  cs-data = cartesian {
-    to-meters = 1.0
-    space-dim = 2
-  }
-}
-// Columns are x, y, left-lateral-slip, fault-opening
-0.0  0.0   1.0  0.0

Deleted: short/3D/PyLith/trunk/playpen/friction/bar_shearwave/quad4/shearwave_sliptime.spatialdb
===================================================================
--- short/3D/PyLith/trunk/playpen/friction/RateStateAgeing/quad4/shearwave_sliptime.spatialdb	2010-03-10 01:25:11 UTC (rev 16399)
+++ short/3D/PyLith/trunk/playpen/friction/bar_shearwave/quad4/shearwave_sliptime.spatialdb	2010-03-10 15:50:08 UTC (rev 16400)
@@ -1,25 +0,0 @@
-#SPATIAL.ascii 1
-SimpleDB {
-  // number of values for slip initiation time
-  num-values = 1
-
-  // Names and units of slip initiation time
-  value-names =  slip-time
-  value-units =  s
-
-  // Number of locations where physical properties are given
-  // 1 location -> data is uniform -> data dimension is 0
-  num-locs = 1
-  data-dim = 0
-
-  // Problem is in 2-D
-  space-dim = 2
-
-  // Coordinate system (2-D with coordinates in meters)
-  cs-data = cartesian {
-    to-meters = 1.0
-    space-dim = 2
-  }
-}
-// Columns are x, y, slip-time
-0.0 0.0   0.1



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