[cig-commits] r16760 - seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY
yangl at geodynamics.org
yangl at geodynamics.org
Fri May 21 11:28:03 PDT 2010
Author: yangl
Date: 2010-05-21 11:28:03 -0700 (Fri, 21 May 2010)
New Revision: 16760
Removed:
seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/CMTSOLUTION.noise
seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/Par_file_TOMO0
seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/Par_file_TOMO1
seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/Par_file_TOMO2
seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/Par_file_TOMO3
seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/STATIONS.noise
seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/S_squared
seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/TOMO12.submit
seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/TOMO3.submit
seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/TOMO_clean_create
seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/TOMO_collect
seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/TOMO_transfer
seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/irec_master_noise
seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/nu_master
Log:
deleted redundant files
Deleted: seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/CMTSOLUTION.noise
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/CMTSOLUTION.noise 2010-05-21 18:23:18 UTC (rev 16759)
+++ seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/CMTSOLUTION.noise 2010-05-21 18:28:03 UTC (rev 16760)
@@ -1,13 +0,0 @@
-PDE 1994 6 9 0 33 16.40 -13.8300 -67.5600 637.0 6.9 6.8 NORTHERN BOLIVIA
-event name: 060994A
-time shift: 29.0000
-half duration: 30.0000
-latitude: 0.0000
-longitude: 0.0000
-depth: 0.0000
-Mrr: 0.00e+27
-Mtt: 0.00e+27
-Mpp: 0.00e+27
-Mrt: 0.00e+28
-Mrp: 0.00e+26
-Mtp: 0.00e+27
Deleted: seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/Par_file_TOMO0
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/Par_file_TOMO0 2010-05-21 18:23:18 UTC (rev 16759)
+++ seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/Par_file_TOMO0 2010-05-21 18:28:03 UTC (rev 16760)
@@ -1,120 +0,0 @@
-
-# forward or adjoint simulation
-SIMULATION_TYPE = 1
-NOISE_TOMOGRAPHY = 0 # flag of noise tomography, three steps (1,2,3). If earthquake tomography, set it to 0.
-SAVE_FORWARD = .true. # save last frame of forward simulation or not
-
-# number of chunks (1,2,3 or 6)
-NCHUNKS = 6
-
-# angular width of the first chunk (not used if full sphere with six chunks)
-ANGULAR_WIDTH_XI_IN_DEGREES = 90.d0 # angular size of a chunk
-ANGULAR_WIDTH_ETA_IN_DEGREES = 90.d0
-CENTER_LATITUDE_IN_DEGREES = 40.d0
-CENTER_LONGITUDE_IN_DEGREES = 10.d0
-GAMMA_ROTATION_AZIMUTH = 20.d0
-
-# number of elements at the surface along the two sides of the first chunk
-# (must be multiple of 16 and 8 * multiple of NPROC below)
-NEX_XI = 160
-NEX_ETA = 160
-
-# number of MPI processors along the two sides of the first chunk
-NPROC_XI = 10
-NPROC_ETA = 10
-
-# 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
-#
-# 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
-#
-# fully 3D models:
-# transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
-# s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
-#
-# 3D models with 1D crust: append "_1Dcrust" the the 3D model name
-# to take the 1D crustal model from the
-# associated reference model rather than the default 3D crustal model
-# e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
-MODEL = 1D_isotropic_prem
-
-# parameters describing the Earth model
-OCEANS = .false.
-ELLIPTICITY = .false.
-TOPOGRAPHY = .false.
-GRAVITY = .false.
-ROTATION = .false.
-ATTENUATION = .false.
-
-# absorbing boundary conditions for a regional simulation
-ABSORBING_CONDITIONS = .false.
-
-# record length in minutes
-RECORD_LENGTH_IN_MINUTES = 5.0d0
-
-# save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
-#MOVIE_COARSE does not work with create_movie_AVS_DX
-MOVIE_SURFACE = .true.
-MOVIE_VOLUME = .false.
-MOVIE_COARSE = .false.
-NTSTEP_BETWEEN_FRAMES = 100
-HDUR_MOVIE = 0.d0
-
-# save movie in volume. Will save element if center of element is in prescribed volume
-# top/bottom: depth in KM, use MOVIE_TOP = -100 to make sure the surface is stored.
-# west/east: longitude, degrees East [-180/180] top/bottom: latitute, degrees North [-90/90]
-# start/stop: frames will be stored at MOVIE_START + i*NSTEP_BETWEEN_FRAMES, where i=(0,1,2..) and iNSTEP_BETWEEN_FRAMES <= MOVIE_STOP
-# movie_volume_type: 1=strain, 2=time integral of strain, 3=\mu*time integral of strain
-# type 4 saves the trace and deviatoric stress in the whole volume, 5=displacement, 6=velocity
-MOVIE_VOLUME_TYPE = 2
-MOVIE_TOP_KM = -100.0
-MOVIE_BOTTOM_KM = 1000.0
-MOVIE_WEST_DEG = -90.0
-MOVIE_EAST_DEG = 90.0
-MOVIE_NORTH_DEG = 90.0
-MOVIE_SOUTH_DEG = -90.0
-MOVIE_START = 0
-MOVIE_STOP = 40000
-
-# save mesh files to check the mesh
-SAVE_MESH_FILES = .false.
-
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
-NUMBER_OF_RUNS = 1
-NUMBER_OF_THIS_RUN = 1
-
-# path to store the local database files on each node
-LOCAL_PATH = /scratch/yangl/DATABASES_MPI
-#/scratch/yangl/DATABASES_MPI
-
-# interval at which we output time step info and max of norm of displacement
-NTSTEP_BETWEEN_OUTPUT_INFO = 1000
-
-# interval in time steps for temporary writing of seismograms
-NTSTEP_BETWEEN_OUTPUT_SEISMOS = 5000000
-NTSTEP_BETWEEN_READ_ADJSRC = 1000
-
-# output format for the seismograms (one can use either or all of the three formats)
-OUTPUT_SEISMOS_ASCII_TEXT = .true.
-OUTPUT_SEISMOS_SAC_ALPHANUM = .false.
-OUTPUT_SEISMOS_SAC_BINARY = .false.
-
-# rotate seismograms to Radial-Transverse-Z or use default North-East-Z reference frame
-ROTATE_SEISMOGRAMS_RT = .false.
-
-# decide if master process writes all the seismograms or if all processes do it in parallel
-WRITE_SEISMOGRAMS_BY_MASTER = .true.
-
-# save all seismograms in one large combined file instead of one file per seismogram
-# to avoid overloading shared non-local file systems such as GPFS for instance
-SAVE_ALL_SEISMOS_IN_ONE_FILE = .false.
-USE_BINARY_FOR_LARGE_FILE = .false.
-
-# flag to impose receivers at the surface or allow them to be buried
-RECEIVERS_CAN_BE_BURIED = .true.
-
-# print source time function
-PRINT_SOURCE_TIME_FUNCTION = .true.
Deleted: seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/Par_file_TOMO1
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/Par_file_TOMO1 2010-05-21 18:23:18 UTC (rev 16759)
+++ seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/Par_file_TOMO1 2010-05-21 18:28:03 UTC (rev 16760)
@@ -1,120 +0,0 @@
-
-# forward or adjoint simulation
-SIMULATION_TYPE = 1
-NOISE_TOMOGRAPHY = 1 # flag of noise tomography, three steps (1,2,3). If earthquake tomography, set it to 0.
-SAVE_FORWARD = .true. # save last frame of forward simulation or not
-
-# number of chunks (1,2,3 or 6)
-NCHUNKS = 6
-
-# angular width of the first chunk (not used if full sphere with six chunks)
-ANGULAR_WIDTH_XI_IN_DEGREES = 90.d0 # angular size of a chunk
-ANGULAR_WIDTH_ETA_IN_DEGREES = 90.d0
-CENTER_LATITUDE_IN_DEGREES = 40.d0
-CENTER_LONGITUDE_IN_DEGREES = 10.d0
-GAMMA_ROTATION_AZIMUTH = 20.d0
-
-# number of elements at the surface along the two sides of the first chunk
-# (must be multiple of 16 and 8 * multiple of NPROC below)
-NEX_XI = 160
-NEX_ETA = 160
-
-# number of MPI processors along the two sides of the first chunk
-NPROC_XI = 10
-NPROC_ETA = 10
-
-# 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
-#
-# 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
-#
-# fully 3D models:
-# transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
-# s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
-#
-# 3D models with 1D crust: append "_1Dcrust" the the 3D model name
-# to take the 1D crustal model from the
-# associated reference model rather than the default 3D crustal model
-# e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
-MODEL = 1D_isotropic_prem
-
-# parameters describing the Earth model
-OCEANS = .false.
-ELLIPTICITY = .false.
-TOPOGRAPHY = .false.
-GRAVITY = .false.
-ROTATION = .false.
-ATTENUATION = .false.
-
-# absorbing boundary conditions for a regional simulation
-ABSORBING_CONDITIONS = .false.
-
-# record length in minutes
-RECORD_LENGTH_IN_MINUTES = 5.0d0
-
-# save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
-#MOVIE_COARSE does not work with create_movie_AVS_DX
-MOVIE_SURFACE = .true.
-MOVIE_VOLUME = .false.
-MOVIE_COARSE = .false.
-NTSTEP_BETWEEN_FRAMES = 100
-HDUR_MOVIE = 0.d0
-
-# save movie in volume. Will save element if center of element is in prescribed volume
-# top/bottom: depth in KM, use MOVIE_TOP = -100 to make sure the surface is stored.
-# west/east: longitude, degrees East [-180/180] top/bottom: latitute, degrees North [-90/90]
-# start/stop: frames will be stored at MOVIE_START + i*NSTEP_BETWEEN_FRAMES, where i=(0,1,2..) and iNSTEP_BETWEEN_FRAMES <= MOVIE_STOP
-# movie_volume_type: 1=strain, 2=time integral of strain, 3=\mu*time integral of strain
-# type 4 saves the trace and deviatoric stress in the whole volume, 5=displacement, 6=velocity
-MOVIE_VOLUME_TYPE = 2
-MOVIE_TOP_KM = -100.0
-MOVIE_BOTTOM_KM = 1000.0
-MOVIE_WEST_DEG = -90.0
-MOVIE_EAST_DEG = 90.0
-MOVIE_NORTH_DEG = 90.0
-MOVIE_SOUTH_DEG = -90.0
-MOVIE_START = 0
-MOVIE_STOP = 40000
-
-# save mesh files to check the mesh
-SAVE_MESH_FILES = .false.
-
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
-NUMBER_OF_RUNS = 1
-NUMBER_OF_THIS_RUN = 1
-
-# path to store the local database files on each node
-LOCAL_PATH = /scratch/yangl/DATABASES_MPI
-#/scratch/yangl/DATABASES_MPI
-
-# interval at which we output time step info and max of norm of displacement
-NTSTEP_BETWEEN_OUTPUT_INFO = 1000
-
-# interval in time steps for temporary writing of seismograms
-NTSTEP_BETWEEN_OUTPUT_SEISMOS = 5000000
-NTSTEP_BETWEEN_READ_ADJSRC = 1000
-
-# output format for the seismograms (one can use either or all of the three formats)
-OUTPUT_SEISMOS_ASCII_TEXT = .true.
-OUTPUT_SEISMOS_SAC_ALPHANUM = .false.
-OUTPUT_SEISMOS_SAC_BINARY = .false.
-
-# rotate seismograms to Radial-Transverse-Z or use default North-East-Z reference frame
-ROTATE_SEISMOGRAMS_RT = .false.
-
-# decide if master process writes all the seismograms or if all processes do it in parallel
-WRITE_SEISMOGRAMS_BY_MASTER = .true.
-
-# save all seismograms in one large combined file instead of one file per seismogram
-# to avoid overloading shared non-local file systems such as GPFS for instance
-SAVE_ALL_SEISMOS_IN_ONE_FILE = .false.
-USE_BINARY_FOR_LARGE_FILE = .false.
-
-# flag to impose receivers at the surface or allow them to be buried
-RECEIVERS_CAN_BE_BURIED = .true.
-
-# print source time function
-PRINT_SOURCE_TIME_FUNCTION = .true.
Deleted: seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/Par_file_TOMO2
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/Par_file_TOMO2 2010-05-21 18:23:18 UTC (rev 16759)
+++ seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/Par_file_TOMO2 2010-05-21 18:28:03 UTC (rev 16760)
@@ -1,120 +0,0 @@
-
-# forward or adjoint simulation
-SIMULATION_TYPE = 1
-NOISE_TOMOGRAPHY = 2 # flag of noise tomography, three steps (1,2,3). If earthquake tomography, set it to 0.
-SAVE_FORWARD = .true. # save last frame of forward simulation or not
-
-# number of chunks (1,2,3 or 6)
-NCHUNKS = 6
-
-# angular width of the first chunk (not used if full sphere with six chunks)
-ANGULAR_WIDTH_XI_IN_DEGREES = 90.d0 # angular size of a chunk
-ANGULAR_WIDTH_ETA_IN_DEGREES = 90.d0
-CENTER_LATITUDE_IN_DEGREES = 40.d0
-CENTER_LONGITUDE_IN_DEGREES = 10.d0
-GAMMA_ROTATION_AZIMUTH = 20.d0
-
-# number of elements at the surface along the two sides of the first chunk
-# (must be multiple of 16 and 8 * multiple of NPROC below)
-NEX_XI = 160
-NEX_ETA = 160
-
-# number of MPI processors along the two sides of the first chunk
-NPROC_XI = 10
-NPROC_ETA = 10
-
-# 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
-#
-# 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
-#
-# fully 3D models:
-# transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
-# s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
-#
-# 3D models with 1D crust: append "_1Dcrust" the the 3D model name
-# to take the 1D crustal model from the
-# associated reference model rather than the default 3D crustal model
-# e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
-MODEL = 1D_isotropic_prem
-
-# parameters describing the Earth model
-OCEANS = .false.
-ELLIPTICITY = .false.
-TOPOGRAPHY = .false.
-GRAVITY = .false.
-ROTATION = .false.
-ATTENUATION = .false.
-
-# absorbing boundary conditions for a regional simulation
-ABSORBING_CONDITIONS = .false.
-
-# record length in minutes
-RECORD_LENGTH_IN_MINUTES = 5.0d0
-
-# save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
-#MOVIE_COARSE does not work with create_movie_AVS_DX
-MOVIE_SURFACE = .true.
-MOVIE_VOLUME = .false.
-MOVIE_COARSE = .false.
-NTSTEP_BETWEEN_FRAMES = 100
-HDUR_MOVIE = 0.d0
-
-# save movie in volume. Will save element if center of element is in prescribed volume
-# top/bottom: depth in KM, use MOVIE_TOP = -100 to make sure the surface is stored.
-# west/east: longitude, degrees East [-180/180] top/bottom: latitute, degrees North [-90/90]
-# start/stop: frames will be stored at MOVIE_START + i*NSTEP_BETWEEN_FRAMES, where i=(0,1,2..) and iNSTEP_BETWEEN_FRAMES <= MOVIE_STOP
-# movie_volume_type: 1=strain, 2=time integral of strain, 3=\mu*time integral of strain
-# type 4 saves the trace and deviatoric stress in the whole volume, 5=displacement, 6=velocity
-MOVIE_VOLUME_TYPE = 2
-MOVIE_TOP_KM = -100.0
-MOVIE_BOTTOM_KM = 1000.0
-MOVIE_WEST_DEG = -90.0
-MOVIE_EAST_DEG = 90.0
-MOVIE_NORTH_DEG = 90.0
-MOVIE_SOUTH_DEG = -90.0
-MOVIE_START = 0
-MOVIE_STOP = 40000
-
-# save mesh files to check the mesh
-SAVE_MESH_FILES = .false.
-
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
-NUMBER_OF_RUNS = 1
-NUMBER_OF_THIS_RUN = 1
-
-# path to store the local database files on each node
-LOCAL_PATH = /scratch/yangl/DATABASES_MPI
-#/scratch/yangl/DATABASES_MPI
-
-# interval at which we output time step info and max of norm of displacement
-NTSTEP_BETWEEN_OUTPUT_INFO = 1000
-
-# interval in time steps for temporary writing of seismograms
-NTSTEP_BETWEEN_OUTPUT_SEISMOS = 5000000
-NTSTEP_BETWEEN_READ_ADJSRC = 1000
-
-# output format for the seismograms (one can use either or all of the three formats)
-OUTPUT_SEISMOS_ASCII_TEXT = .true.
-OUTPUT_SEISMOS_SAC_ALPHANUM = .false.
-OUTPUT_SEISMOS_SAC_BINARY = .false.
-
-# rotate seismograms to Radial-Transverse-Z or use default North-East-Z reference frame
-ROTATE_SEISMOGRAMS_RT = .false.
-
-# decide if master process writes all the seismograms or if all processes do it in parallel
-WRITE_SEISMOGRAMS_BY_MASTER = .true.
-
-# save all seismograms in one large combined file instead of one file per seismogram
-# to avoid overloading shared non-local file systems such as GPFS for instance
-SAVE_ALL_SEISMOS_IN_ONE_FILE = .false.
-USE_BINARY_FOR_LARGE_FILE = .false.
-
-# flag to impose receivers at the surface or allow them to be buried
-RECEIVERS_CAN_BE_BURIED = .true.
-
-# print source time function
-PRINT_SOURCE_TIME_FUNCTION = .true.
Deleted: seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/Par_file_TOMO3
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/Par_file_TOMO3 2010-05-21 18:23:18 UTC (rev 16759)
+++ seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/Par_file_TOMO3 2010-05-21 18:28:03 UTC (rev 16760)
@@ -1,120 +0,0 @@
-
-# forward or adjoint simulation
-SIMULATION_TYPE = 3
-NOISE_TOMOGRAPHY = 3 # flag of noise tomography, three steps (1,2,3). If earthquake tomography, set it to 0.
-SAVE_FORWARD = .false. # save last frame of forward simulation or not
-
-# number of chunks (1,2,3 or 6)
-NCHUNKS = 6
-
-# angular width of the first chunk (not used if full sphere with six chunks)
-ANGULAR_WIDTH_XI_IN_DEGREES = 90.d0 # angular size of a chunk
-ANGULAR_WIDTH_ETA_IN_DEGREES = 90.d0
-CENTER_LATITUDE_IN_DEGREES = 40.d0
-CENTER_LONGITUDE_IN_DEGREES = 10.d0
-GAMMA_ROTATION_AZIMUTH = 20.d0
-
-# number of elements at the surface along the two sides of the first chunk
-# (must be multiple of 16 and 8 * multiple of NPROC below)
-NEX_XI = 160
-NEX_ETA = 160
-
-# number of MPI processors along the two sides of the first chunk
-NPROC_XI = 10
-NPROC_ETA = 10
-
-# 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
-#
-# 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
-#
-# fully 3D models:
-# transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
-# s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
-#
-# 3D models with 1D crust: append "_1Dcrust" the the 3D model name
-# to take the 1D crustal model from the
-# associated reference model rather than the default 3D crustal model
-# e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
-MODEL = 1D_isotropic_prem
-
-# parameters describing the Earth model
-OCEANS = .false.
-ELLIPTICITY = .false.
-TOPOGRAPHY = .false.
-GRAVITY = .false.
-ROTATION = .false.
-ATTENUATION = .false.
-
-# absorbing boundary conditions for a regional simulation
-ABSORBING_CONDITIONS = .false.
-
-# record length in minutes
-RECORD_LENGTH_IN_MINUTES = 5.0d0
-
-# save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
-#MOVIE_COARSE does not work with create_movie_AVS_DX
-MOVIE_SURFACE = .true.
-MOVIE_VOLUME = .false.
-MOVIE_COARSE = .false.
-NTSTEP_BETWEEN_FRAMES = 100
-HDUR_MOVIE = 0.d0
-
-# save movie in volume. Will save element if center of element is in prescribed volume
-# top/bottom: depth in KM, use MOVIE_TOP = -100 to make sure the surface is stored.
-# west/east: longitude, degrees East [-180/180] top/bottom: latitute, degrees North [-90/90]
-# start/stop: frames will be stored at MOVIE_START + i*NSTEP_BETWEEN_FRAMES, where i=(0,1,2..) and iNSTEP_BETWEEN_FRAMES <= MOVIE_STOP
-# movie_volume_type: 1=strain, 2=time integral of strain, 3=\mu*time integral of strain
-# type 4 saves the trace and deviatoric stress in the whole volume, 5=displacement, 6=velocity
-MOVIE_VOLUME_TYPE = 2
-MOVIE_TOP_KM = -100.0
-MOVIE_BOTTOM_KM = 1000.0
-MOVIE_WEST_DEG = -90.0
-MOVIE_EAST_DEG = 90.0
-MOVIE_NORTH_DEG = 90.0
-MOVIE_SOUTH_DEG = -90.0
-MOVIE_START = 0
-MOVIE_STOP = 40000
-
-# save mesh files to check the mesh
-SAVE_MESH_FILES = .false.
-
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
-NUMBER_OF_RUNS = 1
-NUMBER_OF_THIS_RUN = 1
-
-# path to store the local database files on each node
-LOCAL_PATH = /scratch/yangl/DATABASES_MPI_new
-#/scratch/yangl/DATABASES_MPI
-
-# interval at which we output time step info and max of norm of displacement
-NTSTEP_BETWEEN_OUTPUT_INFO = 1000
-
-# interval in time steps for temporary writing of seismograms
-NTSTEP_BETWEEN_OUTPUT_SEISMOS = 5000000
-NTSTEP_BETWEEN_READ_ADJSRC = 1000
-
-# output format for the seismograms (one can use either or all of the three formats)
-OUTPUT_SEISMOS_ASCII_TEXT = .true.
-OUTPUT_SEISMOS_SAC_ALPHANUM = .false.
-OUTPUT_SEISMOS_SAC_BINARY = .false.
-
-# rotate seismograms to Radial-Transverse-Z or use default North-East-Z reference frame
-ROTATE_SEISMOGRAMS_RT = .false.
-
-# decide if master process writes all the seismograms or if all processes do it in parallel
-WRITE_SEISMOGRAMS_BY_MASTER = .true.
-
-# save all seismograms in one large combined file instead of one file per seismogram
-# to avoid overloading shared non-local file systems such as GPFS for instance
-SAVE_ALL_SEISMOS_IN_ONE_FILE = .false.
-USE_BINARY_FOR_LARGE_FILE = .false.
-
-# flag to impose receivers at the surface or allow them to be buried
-RECEIVERS_CAN_BE_BURIED = .true.
-
-# print source time function
-PRINT_SOURCE_TIME_FUNCTION = .true.
Deleted: seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/STATIONS.noise
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/STATIONS.noise 2010-05-21 18:23:18 UTC (rev 16759)
+++ seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/STATIONS.noise 2010-05-21 18:28:03 UTC (rev 16760)
@@ -1,2 +0,0 @@
-A1 II 0.0 0.0 0.0 0.0
-A2 II 0.0 5.0 0.0 0.0
Deleted: seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/S_squared
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/S_squared 2010-05-21 18:23:18 UTC (rev 16759)
+++ seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/S_squared 2010-05-21 18:28:03 UTC (rev 16760)
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- 3.0381000e+02 -2.1259257e-17
Deleted: seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/TOMO12.submit
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/TOMO12.submit 2010-05-21 18:23:18 UTC (rev 16759)
+++ seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/TOMO12.submit 2010-05-21 18:28:03 UTC (rev 16760)
@@ -1,78 +0,0 @@
-#!/bin/bash
-#PBS -S /bin/bash
-#PBS -N NOISE_1_2
-#PBS -q tromp
-#PBS -o zzz_job_info/job.o_old
-#PBS -e zzz_job_info/job.e_old
-
-##PBS -l nodes=75:ppn=8+1:ppn=6,walltime=20:00:00
-#PBS -l nodes=75:ppn=8,walltime=20:00:00
-
-
-cd $PBS_O_WORKDIR
-
-######################################## pre-simulation ###########################################
-## gather simulation infomation
-NPROC_XI=`grep NPROC_XI DATA/Par_file | cut -d = -f 2 `
-NPROC_ETA=`grep NPROC_ETA DATA/Par_file | cut -d = -f 2`
-NCHUNKS=`grep NCHUNKS DATA/Par_file | cut -d = -f 2 `
-numnodes=$(( $NCHUNKS * $NPROC_XI * $NPROC_ETA ))
-cat $PBS_NODEFILE > zzz_job_info/compute_nodes_old
-echo "$PBS_JOBID" > zzz_job_info/jobid_old
-
-## clean local nodes
-d=`date`
-LOCAL_PATH_OLD=`grep LOCAL_PATH DATA/Par_file_TOMO2 | cut -d = -f 2 | sed 's/ //g'`
-LOCAL_PATH_NEW=`grep LOCAL_PATH DATA/Par_file_TOMO3 | cut -d = -f 2 | sed 's/ //g'`
-echo "Start cleaning local disk on nodes, $d"
-for (( ievent=1;ievent<=$numnodes;ievent=ievent+8 ))
-do
- let line=$ievent
- machine_old=$(awk 'NR=='$line'{print}' zzz_job_info/compute_nodes_old)
- mpiexec -np 1 -host $machine_old ./TOMO_clean_create $LOCAL_PATH_OLD < /dev/null &
-done
-wait
-d=`date`
-echo "Finish cleaning local disk on nodes, $d"
-
-## clean OUTPUT_FILES
-rm -rf OUTPUT_FILES
-mkdir OUTPUT_FILES
-
-#### backup Fortran source files
-##rm -rf ZZZ_src
-##mkdir -p ZZZ_src
-##cp -p *.f90 ZZZ_src/
-##cp -p *.c ZZZ_src/
-##cp -p *.in ZZZ_src/
-##cp -p *.h ZZZ_src/
-######################################## simulation ###############################################
-################################################################### step 1: ensemble forward source
-cp DATA/Par_file_TOMO1 DATA/Par_file
-cp DATA/STATIONS.noise DATA/STATIONS
-cp DATA/STATIONS.noise DATA/STATIONS_ADJOINT
-cp DATA/CMTSOLUTION.noise DATA/CMTSOLUTION
-sleep 2
-mpiexec -np $numnodes -hostfile zzz_job_info/compute_nodes_old $PWD/xmeshfem3D
-sleep 2
-mpiexec -np $numnodes -hostfile zzz_job_info/compute_nodes_old $PWD/xspecfem3D
-# backup step 1 results
-rm -rf ZZZ_TOMO1
-mkdir -p ZZZ_TOMO1
-mv OUTPUT_FILES/* ZZZ_TOMO1/
-cp DATA/Par_file ZZZ_TOMO1/
-cp DATA/CMTSOLUTION ZZZ_TOMO1/
-cp DATA/STATIONS ZZZ_TOMO1/
-################################################################ step 2: ensemble forward wavefield
-cp DATA/Par_file_TOMO2 DATA/Par_file
-sleep 2
-mpiexec -np $numnodes -hostfile zzz_job_info/compute_nodes_old $PWD/xmeshfem3D
-sleep 2
-mpiexec -np $numnodes -hostfile zzz_job_info/compute_nodes_old $PWD/xspecfem3D
-# backup step 2 results
-rm -rf ZZZ_TOMO2
-mkdir -p ZZZ_TOMO2
-mv OUTPUT_FILES/* ZZZ_TOMO2/
-cp DATA/Par_file ZZZ_TOMO2/
-cp DATA/CMTSOLUTION ZZZ_TOMO2/
-cp DATA/STATIONS ZZZ_TOMO2/
Deleted: seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/TOMO3.submit
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/TOMO3.submit 2010-05-21 18:23:18 UTC (rev 16759)
+++ seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/TOMO3.submit 2010-05-21 18:28:03 UTC (rev 16760)
@@ -1,92 +0,0 @@
-#!/bin/bash
-#PBS -S /bin/bash
-#PBS -N NOISE_3
-#PBS -q tromp
-#PBS -o zzz_job_info/job.o_new
-#PBS -e zzz_job_info/job.e_new
-
-##PBS -l nodes=75:ppn=8+1:ppn=6,walltime=20:00:00
-#PBS -l nodes=75:ppn=8,walltime=20:00:00
-
-
-cd $PBS_O_WORKDIR
-
-######################################## pre-simulation ###########################################
-numnodes=`wc -l <$PBS_NODEFILE`
-let numnodes=$numnodes
-cat $PBS_NODEFILE > zzz_job_info/compute_nodes_new
-echo "$PBS_JOBID" > zzz_job_info/jobid_new
-
-## transfer data between local nodes
-LOCAL_PATH_OLD=`grep LOCAL_PATH DATA/Par_file_TOMO2 | cut -d = -f 2 | sed 's/ //g'`
-LOCAL_PATH_NEW=`grep LOCAL_PATH DATA/Par_file_TOMO3 | cut -d = -f 2 | sed 's/ //g'`
-d=`date`
-echo "Start transferring local data between nodes, $d"
-for (( ievent=1;ievent<=$numnodes;ievent=ievent+8 ))
-do
- let line=$ievent
- machine_new=$(awk 'NR=='$line'{print}' zzz_job_info/compute_nodes_new)
- mpiexec -np 1 -host $machine_new ./TOMO_clean_create $LOCAL_PATH_NEW < /dev/null &
-done
-
-wait
-
-for (( ievent=1;ievent<=$numnodes;ievent++ ))
-do
- let line=$ievent
- machine_new=$(awk 'NR=='$line'{print}' zzz_job_info/compute_nodes_new)
- machine_old=$(awk 'NR=='$line'{print}' zzz_job_info/compute_nodes_old)
- let myrank="$ievent-1"
- mpiexec -np 1 -host $machine_new ./TOMO_transfer $machine_new $machine_old $LOCAL_PATH_OLD $LOCAL_PATH_NEW $myrank < /dev/null &
-done
-wait
-d=`date`
-echo "Finish transferring local data between nodes, $d"
-
-rm -rf OUTPUT_FILES
-mkdir OUTPUT_FILES
-######################################## simulation ###############################################
-############################################################## step 3: ensemble kernels calculation
-cp DATA/Par_file_TOMO3 DATA/Par_file
-sleep 2
-mpiexec -np $numnodes -hostfile zzz_job_info/compute_nodes_new $PWD/xmeshfem3D
-sleep 2
-mpiexec -np $numnodes -hostfile zzz_job_info/compute_nodes_new $PWD/xspecfem3D
-
-## collect outputs (e.g., kernels, meshes) from local nodes to global disk
-d=`date`
-echo "Start collecting outputs from nodes, $d"
-for (( ievent=1;ievent<=$numnodes;ievent++ ))
-do
- let line=$ievent
- machine_old=$(awk 'NR=='$line'{print}' zzz_job_info/compute_nodes_old)
- machine_new=$(awk 'NR=='$line'{print}' zzz_job_info/compute_nodes_new)
- let myrank="$ievent-1"
- mpiexec -np 1 -host $machine_new ./TOMO_collect $machine_new $machine_old $LOCAL_PATH_NEW $LOCAL_PATH_OLD $myrank < /dev/null &
-done
-wait
-d=`date`
-echo "Finish collecting outputs from nodes, $d"
-
-## backup step 3 results
-rm -rf ZZZ_TOMO3
-mkdir -p ZZZ_TOMO3
-mv OUTPUT_FILES/* ZZZ_TOMO3/
-cp DATA/Par_file ZZZ_TOMO3/
-cp DATA/CMTSOLUTION ZZZ_TOMO3/
-cp DATA/STATIONS ZZZ_TOMO3/
-######################################## post-simulation ##########################################
-#### clean disks on new nodes
-#### disks on old nodes cannot be accessed at this time and needs to be cleaned at the beginning,
-#### i.e., the step 1 of noise simulation (TOMO12.submit)
-##d=`date`
-##echo "Start cleaning local disks, $d"
-##for (( ievent=1;ievent<=$numnodes;ievent++ ))
-##do
-## let line=$ievent
-## machine_new=$(awk 'NR=='$line'{print}' zzz_job_info/compute_nodes_new)
-## mpiexec -np 1 -host $machine_new ./TOMO_clean_create $LOCAL_PATH_NEW < /dev/null &
-##done
-##wait
-##d=`date`
-##echo "Finish cleaning local disks, $d"
Deleted: seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/TOMO_clean_create
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/TOMO_clean_create 2010-05-21 18:23:18 UTC (rev 16759)
+++ seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/TOMO_clean_create 2010-05-21 18:28:03 UTC (rev 16760)
@@ -1,6 +0,0 @@
-#!/bin/bash
-
-LOCAL_PATH=$1
-
-rm -rf $LOCAL_PATH
-mkdir -p $LOCAL_PATH
Deleted: seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/TOMO_collect
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/TOMO_collect 2010-05-21 18:23:18 UTC (rev 16759)
+++ seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/TOMO_collect 2010-05-21 18:28:03 UTC (rev 16760)
@@ -1,13 +0,0 @@
-#!/bin/bash
-
-machine_new=$1
-machine_old=$2
-LOCAL_PATH_NEW=$3
-LOCAL_PATH_OLD=$4
-let myrank=$5
-myrank_new=`printf "%06d" $myrank`
-
-##echo "cp $LOCAL_PATH_NEW/proc$myrank_new*kernel* OUTPUT_FILES/"
-cp $LOCAL_PATH_NEW/proc$myrank_new*reg1*kernel*.bin OUTPUT_FILES/
-cp $LOCAL_PATH_NEW/proc$myrank_new*reg1_*array_dims.txt OUTPUT_FILES/
-cp $LOCAL_PATH_NEW/proc$myrank_new*reg1_solver_data*.bin OUTPUT_FILES/
Deleted: seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/TOMO_transfer
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/TOMO_transfer 2010-05-21 18:23:18 UTC (rev 16759)
+++ seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/TOMO_transfer 2010-05-21 18:28:03 UTC (rev 16760)
@@ -1,11 +0,0 @@
-#!/bin/bash
-
-machine_new=$1
-machine_old=$2
-LOCAL_PATH_OLD=$3
-LOCAL_PATH_NEW=$4
-let myrank=$5
-myrank_new=`printf "%06d" $myrank`
-
-##echo "scp $machine_old:$LOCAL_PATH_OLD/proc$myrank_new* $LOCAL_PATH_NEW/"
-scp $machine_old:$LOCAL_PATH_OLD/proc$myrank_new* $LOCAL_PATH_NEW/
Deleted: seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/irec_master_noise
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/irec_master_noise 2010-05-21 18:23:18 UTC (rev 16759)
+++ seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/irec_master_noise 2010-05-21 18:28:03 UTC (rev 16760)
@@ -1 +0,0 @@
-1
Deleted: seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/nu_master
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/nu_master 2010-05-21 18:23:18 UTC (rev 16759)
+++ seismo/3D/SPECFEM3D_GLOBE/branches/NOISE_TOMOGRAPHY/NOISE_TOMOGRAPHY/nu_master 2010-05-21 18:28:03 UTC (rev 16760)
@@ -1,3 +0,0 @@
-0
-0
-1
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