[cig-commits] r17253 - in seismo/3D: SPECFEM3D/trunk/USER_MANUAL SPECFEM3D/trunk/USER_MANUAL/figures SPECFEM3D_GLOBE/trunk/USER_MANUAL SPECFEM3D_GLOBE/trunk/USER_MANUAL/figures
dkomati1 at geodynamics.org
dkomati1 at geodynamics.org
Sun Oct 10 16:10:01 PDT 2010
Author: dkomati1
Date: 2010-10-10 16:10:01 -0700 (Sun, 10 Oct 2010)
New Revision: 17253
Modified:
seismo/3D/SPECFEM3D/trunk/USER_MANUAL/bibliography.bib
seismo/3D/SPECFEM3D/trunk/USER_MANUAL/figures/gauss_vs_triangle_mod.pdf
seismo/3D/SPECFEM3D/trunk/USER_MANUAL/figures/source_timing.pdf
seismo/3D/SPECFEM3D/trunk/USER_MANUAL/manual_SPECFEM3D.pdf
seismo/3D/SPECFEM3D/trunk/USER_MANUAL/manual_SPECFEM3D.tex
seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/bibliography.bib
seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/figures/PKPdf_all_15s500s.pdf
seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/figures/bolivia_trans.pdf
seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/figures/bolivia_vertical.pdf
seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/figures/vanuatu_trans.pdf
seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/figures/vanuatu_vertical.pdf
seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/manual_SPECFEM3D_GLOBE.pdf
seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/manual_SPECFEM3D_GLOBE.tex
Log:
added a few sentences about continuous and discontinuous Galerkin to the manual
Modified: seismo/3D/SPECFEM3D/trunk/USER_MANUAL/bibliography.bib
===================================================================
--- seismo/3D/SPECFEM3D/trunk/USER_MANUAL/bibliography.bib 2010-10-10 21:07:58 UTC (rev 17252)
+++ seismo/3D/SPECFEM3D/trunk/USER_MANUAL/bibliography.bib 2010-10-10 23:10:01 UTC (rev 17253)
@@ -3275,6 +3275,18 @@
pages = {520-531}
}
+ at ARTICLE{DeSeWh08,
+ author = {De Basabe, J. D. and Sen, M. K. and Wheeler, M. F.},
+ title = {The interior penalty discontinuous {G}alerkin method for elastic
+ wave propagation: grid dispersion},
+ journal = gji,
+ year = {2008},
+ volume = {175},
+ pages = {83-93},
+ number = {1},
+ doi = {10.1111/j.1365-246X.2008.03915.x}
+}
+
@ARTICLE{DeSe10,
author = {Jon{\'a}s D. {De Basabe} and Mrinal K. Sen},
title = {Stability of the high-order finite elements for acoustic or elastic
@@ -5276,6 +5288,16 @@
pages = {221-235}
}
+ at PHDTHESIS{Goeddeke:2010:FAA,
+ author = {Dominik G{\"o}ddeke},
+ title = {Fast and Accurate Finite-Element Multigrid Solvers for {PDE} Simulations
+ on {GPU} Clusters},
+ school = {{T}echnische {U}niversit{\"a}t Dortmund, {F}akult{\"a}t f{\"u}r {M}athematik},
+ year = {2010},
+ month = may,
+ note = {\url{http://hdl.handle.net/2003/27243}}
+}
+
@INPROCEEDINGS{Goeddeke:2009:GAO,
author = {Dominik G{\"o}ddeke and Sven H.M. Buijssen and Hilmar Wobker and
Stefan Turek},
@@ -5285,6 +5307,7 @@
year = {2009},
editor = {Waleed W. Smari and John P. McIntire},
pages = {12-21},
+ address = {Leipzig, Germany},
month = jun
}
@@ -6901,10 +6924,13 @@
author = {Dimitri Komatitsch and Gordon Erlebacher and Dominik G\"oddeke and
David Mich\'ea},
title = {High-order finite-element seismic wave propagation modeling with
- {MPI} on a large-scale {GPU} cluster},
+ {MPI} on a large {GPU} cluster},
journal = jcp,
year = {2010},
- note = {In press.}
+ volume = {229},
+ pages = {7692-7714},
+ number = {20},
+ doi = {10.1016/j.jcp.2010.06.024}
}
@ARTICLE{KoGoErMi10,
@@ -7147,6 +7173,18 @@
pages = {535-540}
}
+ at ARTICLE{Kop06,
+ author = {D. A. Kopriva},
+ title = {Metric identities and the discontinuous spectral element method on
+ curvilinear meshes},
+ journal = {Journal of Scientific Computing},
+ year = {2006},
+ volume = {26},
+ pages = {301-327},
+ number = {3},
+ doi = {10.1007/s10915-005-9070-8}
+}
+
@ARTICLE{Kop96,
author = {D. A. Kopriva},
title = {A conservative staggered-grid {C}hebyshev multidomain method for
@@ -7180,6 +7218,18 @@
doi = {10.1016/0168-9274(86)90030-9}
}
+ at ARTICLE{KoWoHu02,
+ author = {D. A. Kopriva and S. L. Woodruff and M. Y. Hussaini},
+ title = {Computation of electromagnetic scattering with a non-conforming discontinuous
+ spectral element method},
+ journal = ijnme,
+ year = {2002},
+ volume = {53},
+ pages = {105-122},
+ number = {1},
+ doi = {10.1002/nme.394}
+}
+
@ARTICLE{KosKosSyr85,
author = {A. M. Kosevich and Yu. A. Kosevich and E. S. Syrkin},
title = {Generalized {R}ayleigh waves and the geometry of isofrequency surfaces
@@ -7814,6 +7864,17 @@
doi = {10.1109/MM.2008.31}
}
+ at ARTICLE{LiNeGi10,
+ author = {Joseph M. Lindquist and Beny Neta and Francis X. Giraldo},
+ title = {A spectral element solution of the {K}lein-{G}ordon equation with
+ high-order treatment of time and non-reflecting boundary},
+ journal = {Wave Motion},
+ year = {2010},
+ volume = {47},
+ pages = {289-298},
+ number = {5}
+}
+
@ARTICLE{LiAnKa76,
author = {H. P. Liu and D. L. Anderson and H. Kanamori},
title = {Velocity dispersion due to anelasticity: implications for seismology
@@ -8725,10 +8786,12 @@
@ARTICLE{MiKo10,
author = {David Mich\'{e}a and Dimitri Komatitsch},
title = {Accelerating a 3{D} finite-difference wave propagation code using
- graphics cards},
+ {GPU} graphics cards},
journal = gji,
year = {2010},
- note = {in press.},
+ volume = {182},
+ pages = {389-402},
+ number = {1},
doi = {10.1111/j.1365-246X.2010.04616.x}
}
@@ -12710,6 +12773,19 @@
pages = {37-78}
}
+ at ARTICLE{WiStBuGh10,
+ author = {Lucas C. Wilcox and Georg Stadler and Carsten Burstedde and Omar
+ Ghattas},
+ title = {A high-order discontinuous {G}alerkin method for wave propagation
+ through coupled elastic-acoustic media},
+ journal = jcp,
+ year = {2010},
+ volume = {229},
+ pages = {9373-9396},
+ number = {24},
+ doi = {10.1016/j.jcp.2010.09.008}
+}
+
@ARTICLE{WiAm94,
author = {J. R. Williams and K. Amaratunga},
title = {Introduction to wavelets in engineering},
@@ -12902,6 +12978,17 @@
address = {Washington D.C., USA}
}
+ at ARTICLE{XuMuOsNo10,
+ author = {Jin Xu and Brahim Mustapha and Peter Ostroumov and Jerry Nolen},
+ title = {Direct {V}lasov Solvers with High-Order Spectral Element Method},
+ journal = {Commun. Comput. Phys.},
+ year = {2010},
+ volume = {8},
+ pages = {159-184},
+ number = {1},
+ doi = {10.4208/cicp.080409.051009a}
+}
+
@ARTICLE{YaWaCh07,
author = {Juekuan Yang and Yujuan Wang and Yunfei Chen},
title = {{GPU} accelerated molecular dynamics simulation of thermal conductivities},
Modified: seismo/3D/SPECFEM3D/trunk/USER_MANUAL/figures/gauss_vs_triangle_mod.pdf
===================================================================
(Binary files differ)
Modified: seismo/3D/SPECFEM3D/trunk/USER_MANUAL/figures/source_timing.pdf
===================================================================
(Binary files differ)
Modified: seismo/3D/SPECFEM3D/trunk/USER_MANUAL/manual_SPECFEM3D.pdf
===================================================================
(Binary files differ)
Modified: seismo/3D/SPECFEM3D/trunk/USER_MANUAL/manual_SPECFEM3D.tex
===================================================================
--- seismo/3D/SPECFEM3D/trunk/USER_MANUAL/manual_SPECFEM3D.tex 2010-10-10 21:07:58 UTC (rev 17252)
+++ seismo/3D/SPECFEM3D/trunk/USER_MANUAL/manual_SPECFEM3D.tex 2010-10-10 23:10:01 UTC (rev 17253)
@@ -108,8 +108,10 @@
\chapter{Introduction}
The software package SPECFEM3D simulates seismic
-wave propagation at the local or regional scale based upon the spectral-element method (SEM). Effects
-due to lateral variations in compressional-wave speed, shear-wave
+wave propagation at the local or regional scale
+based upon the spectral-element method (SEM).
+The SEM is a continuous Galerkin technique, which can easily be made discontinous \citep{BeMaPa94,KoWoHu02,ChCaVi03,Kop06}; it is then a particular case of the discontinuous Galerkin technique \citep{ReHi73,FaRi99,HuHuRa99,CoKaSh00,GiHeWa02,RiWh03,MoRi05,GrScSc06,BeLaPi06,DuKa06,DeSeWh08,WiStBuGh10,DeSe10}, with optimized efficiency because of its tensorized basis functions.
+Effects due to lateral variations in compressional-wave speed, shear-wave
speed, density, a 3D crustal model, topography and bathymetry are
included. For a detailed introduction to the SEM as applied to regional
seismic wave propagation, please consult \citet{KoVi98,KoTr99,ChKoViCaVaFe07,TrKoLi08} and
Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/bibliography.bib
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/bibliography.bib 2010-10-10 21:07:58 UTC (rev 17252)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/bibliography.bib 2010-10-10 23:10:01 UTC (rev 17253)
@@ -147,15 +147,16 @@
address = {Amsterdam, The Netherlands}
}
- at ARTICLE{AdPaBo07,
+ at INPROCEEDINGS{AdPaBo07,
author = {S. Adams and J. Payne and R. Boppana},
title = {Finite Difference Time Domain ({FDTD}) Simulations Using Graphics
Processors},
- journal = {Proceedings of the Department of Defense High Performance Computing
+ booktitle = {Proceedings of the Department of Defense High Performance Computing
Modernization Program Users Group Conference},
year = {2007},
pages = {334-338},
address = {Pittsburgh, Pennsylvania, USA},
+ publisher = {IEEE Computer Society, Washington, DC, USA},
doi = {10.1109/HPCMP-UGC.2007.34}
}
@@ -805,18 +806,22 @@
and Information Technology},
year = {2008},
pages = {291-294},
+ address = {Sydney, Australia},
+ publisher = {IEEE Computer Society, Washington, DC, USA},
doi = {10.1109/CIT.2008.4594689}
}
- at ARTICLE{BaRoTaPaGoSi08,
+ at INPROCEEDINGS{BaRoTaPaGoSi08,
author = {A. Balevic and L. Rockstroh and A. Tausendfreund and S. Patzelt and
G. Goch and S. Simon},
title = {Accelerating Simulations of Light Scattering Based on a Finite-Difference
Time-Domain Method with General Purpose {GPU}s},
- journal = {Proceedings of the 11th IEEE International Conference on Computational
+ booktitle = {Proceedings of the 11th IEEE International Conference on Computational
Science and Engineering},
year = {2008},
- pages = {327-334}
+ pages = {327-334},
+ address = {Sao Paulo, Brazil},
+ publisher = {IEEE Computer Society, Washington, DC, USA}
}
@ARTICLE{BaEnHaJo88,
@@ -989,16 +994,18 @@
pages = {1083-1096}
}
- at ARTICLE{BaSaFiRo05,
+ at INPROCEEDINGS{BaSaFiRo05,
author = {Baron, G. S. and Sarris, C. D. and Fiume, E. and Rogers Sr., Edward
S.},
title = {Fast and accurate time-domain simulations with commodity graphics
hardware},
- journal = {Proceedings of the 2005 IEEE Antennas and Propagation Society International
+ booktitle = {Proceedings of the 2005 IEEE Antennas and Propagation Society International
Symposium},
year = {2005},
volume = {4A},
pages = {193-196},
+ address = {Seoul, Korea},
+ publisher = {IEEE Computer Society, Washington, DC, USA},
doi = {10.1109/APS.2005.1552619}
}
@@ -1871,16 +1878,6 @@
number = {2}
}
- at ARTICLE{DaEkDz08,
- author = {C. A. Dalton and G. Ekstr\"{o}m and A. M. Dziewo\'nski},
- title = {The global attenuation structure of the upper mantle},
- journal = jgr,
- year = {2008},
- volume = {113},
- pages = {B05317},
- doi = {10.1029/2006JB004394}
-}
-
@BOOK{Cag39,
title = {R\'eflexion et R\'efraction des Ondes Sismiques Progressives},
publisher = {Gauthiers-Villars},
@@ -2309,6 +2306,18 @@
address = {Cambridge, UK}
}
+ at ARTICLE{CeNuMa10,
+ author = {Ali Cevahir and Akira Nukada and Satoshi Matsuoka},
+ title = {High performance conjugate gradient solver on multi-{GPU} clusters
+ using hypergraph partitioning},
+ journal = {Computer Science Research and Development},
+ year = {2010},
+ volume = {25},
+ pages = {83-91},
+ number = {1-2},
+ doi = {10.1007/s00450-010-0112-6}
+}
+
@ARTICLE{ChSaHa96,
author = {F. J. Ch\'avez-Garc\'{\i}a and L. S\'anchez and D. Hatzfeld},
title = {Topographic site effects and HVSR. A comparison between observation
@@ -2452,7 +2461,7 @@
Yann Capdeville and Bernard Valette and Gaetano Festa},
title = {Spectral Element Analysis in Seismology},
booktitle = {Advances in wave propagation in heterogeneous media},
- publisher = {Elsevier - Academic Press},
+ publisher = {Elsevier - Academic Press, London, UK},
year = {2007},
editor = {Ru-Shan Wu and Val\'erie Maupin},
volume = {48},
@@ -2719,10 +2728,11 @@
}
@BOOK{CoKaSh00,
- title = {Discontinuous {G}alerkin Methods: Theory, Compuration and Applications},
+ title = {Discontinuous {G}alerkin Methods: Theory, Computation and Applications},
publisher = {Springer},
year = {2000},
- author = {Bernardo Cockburn and George E. Karniadakis and Chi-Wang Shu}
+ author = {Bernardo Cockburn and George E. Karniadakis and Chi-Wang Shu},
+ address = {Heidelberg, Germany}
}
@BOOK{Aco92,
@@ -3094,6 +3104,16 @@
pages = {327-340}
}
+ at ARTICLE{DaEkDz08,
+ author = {C. A. Dalton and G. Ekstr\"{o}m and A. M. Dziewo\'nski},
+ title = {The global attenuation structure of the upper mantle},
+ journal = jgr,
+ year = {2008},
+ volume = {113},
+ pages = {B05317},
+ doi = {10.1029/2006JB004394}
+}
+
@ARTICLE{ED99,
author = {E. Danicki},
title = {Resonant phenomena in bulk-wave scattering by in-plane periodic cracks},
@@ -3255,13 +3275,28 @@
pages = {520-531}
}
+ at ARTICLE{DeSeWh08,
+ author = {De Basabe, J. D. and Sen, M. K. and Wheeler, M. F.},
+ title = {The interior penalty discontinuous {G}alerkin method for elastic
+ wave propagation: grid dispersion},
+ journal = gji,
+ year = {2008},
+ volume = {175},
+ pages = {83-93},
+ number = {1},
+ doi = {10.1111/j.1365-246X.2008.03915.x}
+}
+
@ARTICLE{DeSe10,
author = {Jon{\'a}s D. {De Basabe} and Mrinal K. Sen},
- title = {Stability of the High-Order Finite Elements for Acoustic or Elastic
- Wave Propagation with High-Order Time Stepping},
+ title = {Stability of the high-order finite elements for acoustic or elastic
+ wave propagation with high-order time stepping},
journal = gji,
year = {2010},
- note = {, in press.}
+ volume = {181},
+ pages = {577-590},
+ number = {1},
+ doi = {10.1111/j.1365-246X.2010.04536.x}
}
@ARTICLE{DeSe07,
@@ -3545,6 +3580,17 @@
doi = {10.1016/j.wavemoti.2007.03.003}
}
+ at ARTICLE{Dro93,
+ author = {Jean-Jacques Droux},
+ title = {An algorithm to optimally color a mesh},
+ journal = cmame,
+ year = {1993},
+ volume = {104},
+ pages = {249-260},
+ number = {2},
+ doi = {10.1016/0045-7825(93)90199-8}
+}
+
@ARTICLE{Dub93,
author = {M. Dubiner},
title = {Spectral methods on triangles and other domains},
@@ -3624,14 +3670,29 @@
pages = {880-891}
}
- at ARTICLE{DuJoGuKeKo09,
+ at ARTICLE{DuDeFoKoRo10,
+ author = {Fabrice Dupros and de Martin, Florent and Evelyne Foerster and Dimitri
+ Komatitsch and Jean Roman},
+ title = {High-performance finite-element simulations of seismic wave propagation
+ in three-dimensional non linear inelastic geological media},
+ journal = {Parallel Computing},
+ year = {2010},
+ volume = {36},
+ pages = {308-325},
+ number = {5-6},
+ doi = {10.1016/j.parco.2009.12.011}
+}
+
+ at ARTICLE{DuJoGuKeKo10,
author = {Guilhem Dupuy and Bruno Jobard and Sebastien Guillon and Noomane
Keskes and Dimitri Komatitsch},
title = {Parallel extraction and simplification of large isosurfaces using
an extended tandem algorithm},
journal = {Computer-Aided Design},
- year = {2009},
- volume = {In Press, Corrected Proof},
+ year = {2010},
+ volume = {42},
+ pages = {129-138},
+ number = {2},
doi = {10.1016/j.cad.2009.04.016}
}
@@ -3752,7 +3813,7 @@
@ARTICLE{ElLeDa08,
author = {Erich Elsen and Patrick LeGresley and Eric Darve},
title = {Large calculation of the flow over a hypersonic vehicle using a {GPU}},
- journal = {Journal of Computational Physics},
+ journal = jcp,
year = {2008},
volume = {227},
pages = {10148--10161},
@@ -3824,16 +3885,6 @@
address = {Amsterdam}
}
- at ARTICLE{EUCrust07,
- author = {M. Tesauro and M. K. Kaban and S. A. P. L. Cloetingh},
- title = {EuCrust-07: A new reference model for the {European} crust},
- journal = grl,
- year = {2008},
- volume = {35},
- pages = {L05313},
- doi = {10.1029/2007GL032244}
-}
-
@BOOK{Euv94,
title = {R\'esolution num\'erique des \'equations aux d\'eriv\'ees partielles
- Diff\'erences finies, \'el\'ements finis, probl\`emes en domaine
@@ -3936,6 +3987,17 @@
number = {4}
}
+ at ARTICLE{FaRi99,
+ author = {Falk, Richard S. and Richter, Gerard R.},
+ title = {Explicit Finite Element Methods for Symmetric Hyperbolic Equations},
+ journal = {SIAM J. Numer. Anal.},
+ year = {1999},
+ volume = {36},
+ pages = {935-952},
+ number = {3},
+ doi = {10.1137/S0036142997329463}
+}
+
@ARTICLE{FaLiHe02,
author = {G. X. Fan and Q. H. Liu and J. S. Hesthaven},
title = {Multidomain pseudospectral time-domain simulations of scattering
@@ -4714,7 +4776,9 @@
journal = {IEEE Transactions on Antennas and Propagation},
year = {2010},
volume = {58},
- number = {2}
+ pages = {838-847},
+ number = {3},
+ doi = {10.1109/TAP.2009.2037765}
}
@ARTICLE{GeOh94,
@@ -5103,6 +5167,18 @@
pages = {283-300}
}
+ at ARTICLE{GrZa10,
+ author = {Michael Griebel and Peter Zaspel},
+ title = {A multi-{GPU} accelerated solver for the three-dimensional two-phase
+ incompressible {N}avier-{S}tokes equations},
+ journal = {Computer Science Research and Development},
+ year = {2010},
+ volume = {25},
+ pages = {65-73},
+ number = {1-2},
+ doi = {10.1007/s00450-010-0111-7}
+}
+
@ARTICLE{GrBo79,
author = {D. W. Griffiths and G. A. Bollinger},
title = {The effect of {A}ppalachian mountain topography on seismic waves},
@@ -5141,6 +5217,17 @@
pages = {331-353}
}
+ at ARTICLE{GrScSc06,
+ author = {Marcus J. Grote and Anna Schneebeli and Dominik Sch\"{o}tzau},
+ title = {Discontinuous {G}alerkin Finite Element Method for the Wave Equation},
+ journal = {SIAM Journal on Numerical Analysis},
+ year = {2006},
+ volume = {44},
+ pages = {2408-2431},
+ number = {6},
+ doi = {10.1137/05063194X}
+}
+
@ARTICLE{GuLi06,
author = {Murthy N. Guddati and Keng Wit Lim},
title = {Continued fraction absorbing boundary conditions for convex polygonal
@@ -5201,6 +5288,16 @@
pages = {221-235}
}
+ at PHDTHESIS{Goeddeke:2010:FAA,
+ author = {Dominik G{\"o}ddeke},
+ title = {Fast and Accurate Finite-Element Multigrid Solvers for {PDE} Simulations
+ on {GPU} Clusters},
+ school = {{T}echnische {U}niversit{\"a}t Dortmund, {F}akult{\"a}t f{\"u}r {M}athematik},
+ year = {2010},
+ month = may,
+ note = {\url{http://hdl.handle.net/2003/27243}}
+}
+
@INPROCEEDINGS{Goeddeke:2009:GAO,
author = {Dominik G{\"o}ddeke and Sven H.M. Buijssen and Hilmar Wobker and
Stefan Turek},
@@ -5210,6 +5307,7 @@
year = {2009},
editor = {Waleed W. Smari and John P. McIntire},
pages = {12-21},
+ address = {Leipzig, Germany},
month = jun
}
@@ -5751,6 +5849,18 @@
doi = {10.1006/jcph.2001.6887}
}
+ at ARTICLE{HuHuRa99,
+ author = {Hu, Fang Q. and Hussaini, M. Y. and Rasetarinera, Patrick},
+ title = {An analysis of the discontinuous {G}alerkin method for wave propagation
+ problems},
+ journal = jcp,
+ year = {1999},
+ volume = {151},
+ pages = {921-946},
+ number = {2},
+ doi = {10.1006/jcph.1999.6227}
+}
+
@ARTICLE{Huang95,
author = {J. Y. Huang},
title = {Interaction of {$SH$} waves with a finite crack in half space},
@@ -6633,6 +6743,14 @@
month = aug
}
+ at BOOK{KiHw10,
+ title = {Programming Massively Parallel Processors: A Hands-on Approach},
+ publisher = {Morgan Kaufmann},
+ year = {2010},
+ author = {Kirk, David B. and Hwu, Wen-mei W.},
+ address = {Boston, Massachusetts, USA}
+}
+
@INPROCEEDINGS{kiyashchenkoplessix2005,
author = {D. A. Kiyashchenko and R. E. Plessix},
title = {True amplitude multi-one-way migration: comparison of different imaging
@@ -6707,7 +6825,7 @@
publisher = {North-Holland},
year = {1987},
author = {S. Kobayashi},
- address = {Amsterdam}
+ address = {Amsterdam, The Netherlands}
}
@ARTICLE{KohnNir,
@@ -6806,12 +6924,28 @@
author = {Dimitri Komatitsch and Gordon Erlebacher and Dominik G\"oddeke and
David Mich\'ea},
title = {High-order finite-element seismic wave propagation modeling with
- {MPI} on a large-scale {GPU} cluster},
+ {MPI} on a large {GPU} cluster},
journal = jcp,
year = {2010},
- note = {Submitted.}
+ volume = {229},
+ pages = {7692-7714},
+ number = {20},
+ doi = {10.1016/j.jcp.2010.06.024}
}
+ at ARTICLE{KoGoErMi10,
+ author = {Dimitri Komatitsch and Dominik G\"oddeke and Gordon Erlebacher and
+ David Mich\'ea},
+ title = {Modeling the propagation of elastic waves using spectral elements
+ on a cluster of 192 {GPU}s},
+ journal = {Computer Science Research and Development},
+ year = {2010},
+ volume = {25},
+ pages = {75-82},
+ number = {1-2},
+ doi = {10.1007/s00450-010-0109-1}
+}
+
@ARTICLE{KoLaMi08a,
author = {Dimitri Komatitsch and Jes\'us Labarta and David Mich\'ea},
title = {A simulation of seismic wave propagation at high resolution in the
@@ -7039,6 +7173,18 @@
pages = {535-540}
}
+ at ARTICLE{Kop06,
+ author = {D. A. Kopriva},
+ title = {Metric identities and the discontinuous spectral element method on
+ curvilinear meshes},
+ journal = {Journal of Scientific Computing},
+ year = {2006},
+ volume = {26},
+ pages = {301-327},
+ number = {3},
+ doi = {10.1007/s10915-005-9070-8}
+}
+
@ARTICLE{Kop96,
author = {D. A. Kopriva},
title = {A conservative staggered-grid {C}hebyshev multidomain method for
@@ -7072,6 +7218,18 @@
doi = {10.1016/0168-9274(86)90030-9}
}
+ at ARTICLE{KoWoHu02,
+ author = {D. A. Kopriva and S. L. Woodruff and M. Y. Hussaini},
+ title = {Computation of electromagnetic scattering with a non-conforming discontinuous
+ spectral element method},
+ journal = ijnme,
+ year = {2002},
+ volume = {53},
+ pages = {105-122},
+ number = {1},
+ doi = {10.1002/nme.394}
+}
+
@ARTICLE{KosKosSyr85,
author = {A. M. Kosevich and Yu. A. Kosevich and E. S. Syrkin},
title = {Generalized {R}ayleigh waves and the geometry of isofrequency surfaces
@@ -7706,6 +7864,17 @@
doi = {10.1109/MM.2008.31}
}
+ at ARTICLE{LiNeGi10,
+ author = {Joseph M. Lindquist and Beny Neta and Francis X. Giraldo},
+ title = {A spectral element solution of the {K}lein-{G}ordon equation with
+ high-order treatment of time and non-reflecting boundary},
+ journal = {Wave Motion},
+ year = {2010},
+ volume = {47},
+ pages = {289-298},
+ number = {5}
+}
+
@ARTICLE{LiAnKa76,
author = {H. P. Liu and D. L. Anderson and H. Kanamori},
title = {Velocity dispersion due to anelasticity: implications for seismology
@@ -8233,7 +8402,7 @@
@ARTICLE{MaOl03,
author = {Carey Marcinkovich and Kim Bak Olsen},
title = {On the implementation of perfectly matched layers in a three-dimensional
- fourth-order velocity-stress finite difference scheme},
+ fourth-order velocity-stress finite-difference scheme},
journal = jgr,
year = {2003},
volume = {108},
@@ -8326,16 +8495,6 @@
doi = {10.1190/1.2939484}
}
- at ARTICLE{MaKoGeBr10,
- author = {Roland Martin and Dimitri Komatitsch and Stephen Gedney and Emilien
- Bruthiaux},
- title = {A high-order time and space formulation of the unsplit perfectly
- matched layer for the seismic wave equation},
- journal = cmes,
- year = {2010},
- note = {Submitted.}
-}
-
@ARTICLE{MaKoGe08,
author = {Roland Martin and Dimitri Komatitsch and Stephen D. Gedney},
title = {A variational formulation of a stabilized unsplit convolutional perfectly
@@ -8347,6 +8506,19 @@
number = {3}
}
+ at ARTICLE{MaKoGeBr10,
+ author = {Roland Martin and Dimitri Komatitsch and Stephen D. Gedney and Emilien
+ Bruthiaux},
+ title = {A high-order time and space formulation of the unsplit perfectly
+ matched layer for the seismic wave equation using {Auxiliary Differential
+ Equations (ADE-PML)}},
+ journal = cmes,
+ year = {2010},
+ volume = {56},
+ pages = {17-42},
+ number = {1}
+}
+
@ARTICLE{MaPr07,
author = {Y. J. Masson and S. R. Pride},
title = {Poroelastic finite-difference modeling of seismic attenuation and
@@ -8601,21 +8773,26 @@
@ARTICLE{MePa08,
author = {Kristel C. Meza-Fajardo and Apostolos S. Papageorgiou},
title = {A nonconvolutional, split-field, perfectly matched layer for wave
- propagation in isotropic and anisotropic elastic media; stability
+ propagation in isotropic and anisotropic elastic media: Stability
analysis},
journal = bssa,
year = {2008},
volume = {98},
pages = {1811-1836},
- number = {4}
+ number = {4},
+ doi = {10.1785/0120070223}
}
@ARTICLE{MiKo10,
author = {David Mich\'{e}a and Dimitri Komatitsch},
- title = {Accelerating a 3{D} finite-difference wave propagation code using graphics cards},
+ title = {Accelerating a 3{D} finite-difference wave propagation code using
+ {GPU} graphics cards},
journal = gji,
year = {2010},
- note = {in press.}
+ volume = {182},
+ pages = {389-402},
+ number = {1},
+ doi = {10.1111/j.1365-246X.2010.04616.x}
}
@INPROCEEDINGS{Mic09,
@@ -8699,7 +8876,8 @@
journal = grl,
year = {2005},
volume = {32},
- pages = {L01306}
+ pages = {L01306},
+ doi = {10.1029/2004GL021598}
}
@ARTICLE{MoKrBy01,
@@ -8730,7 +8908,7 @@
title = {The Finite-difference Time-domain method for Modeling of Seismic
Wave Propagation},
booktitle = {Advances in wave propagation in heterogeneous media},
- publisher = {Elsevier - Academic Press},
+ publisher = {Elsevier - Academic Press, London, UK},
year = {2007},
editor = {Ru-Shan Wu and Val\'erie Maupin},
volume = {48},
@@ -9161,7 +9339,7 @@
author = {Lars Nyland and Mark Harris and Jan Prins},
title = {Fast {N}-body simulation with {CUDA}},
booktitle = {GPU Gems 3},
- publisher = {Addison-Wesley Professional},
+ publisher = {Addison-Wesley Professional, Boston, MA, USA},
year = {2007},
chapter = {31},
pages = {677--695},
@@ -9300,15 +9478,6 @@
pages = {12-49}
}
- at ARTICLE{OsGeDeMe10,
- author = {Matthieu Ospici and Luigi Genovese and Thierry Deutsch and Jean-Fran\c{c}ois
- M\'ehaut},
- title = {The impact of {GPU}s on performance and energy consumption},
- journal = {IEEE Transactions on Parallel and Distributed Systems},
- year = {2009},
- note = {, Submitted.}
-}
-
@ARTICLE{Ott71,
author = {M. Ottaviani},
title = {Elastic wave propagation in two evenly-welded quarter-spaces},
@@ -9957,6 +10126,18 @@
pages = {2005-2008}
}
+ at ARTICLE{RaNaLi09,
+ author = {Nikunj Raghuvanshi and Rahul Narain and Ming C. Lin},
+ title = {Efficient and Accurate Sound Propagation Using Adaptive Rectangular
+ Decomposition},
+ journal = {IEEE Transactions on Visualization and Computer Graphics},
+ year = {2009},
+ volume = {15},
+ pages = {789-801},
+ number = {5},
+ doi = {10.1109/TVCG.2009.28}
+}
+
@ARTICLE{Rah04,
author = {A. N. Rahmouni},
title = {Un mod\`ele {PML} bien pos\'e pour l'\'elastodynamique anisotrope
@@ -10150,6 +10331,16 @@
pages = {1-66}
}
+ at ARTICLE{RiWh03,
+ author = {B. Rivi\`ere and M. F. Wheeler},
+ title = {Discontinuous Finite Element Methods for Acoustic and Elastic Wave
+ Problems},
+ journal = {Contemporary Mathematics},
+ year = {2003},
+ volume = {329},
+ pages = {271-282}
+}
+
@ARTICLE{Rob96,
author = {J. O. A. Robertsson},
title = {A numerical free-surface condition for elastic/viscoelastic finite-difference
@@ -10351,6 +10542,19 @@
doi = {10.1029/2003GL018304}
}
+ at ARTICLE{RoBeCoKo10,
+ author = {Diego Rossinelli and Michael Bergdorf and Georges-Henri Cottet and
+ Petros Koumoutsakos},
+ title = {{GPU} accelerated simulations of bluff body flows using vortex particle
+ methods},
+ journal = jcp,
+ year = {2010},
+ volume = {229},
+ pages = {3316-3333},
+ number = {9},
+ doi = {10.1016/j.jcp.2010.01.004}
+}
+
@ARTICLE{Roy08,
author = {D. Royer},
title = {Stresses and displacements for some Rayleigh-type surface acoustic
@@ -10657,6 +10861,17 @@
pages = {365-380}
}
+ at ARTICLE{SaKoTr10,
+ author = {Brian Savage and Dimitri Komatitsch and Jeroen Tromp},
+ title = {Effects of {3D} attenuation on seismic wave amplitude and phase measurements},
+ journal = bssa,
+ year = {2010},
+ volume = {100},
+ pages = {1241-1251},
+ number = {3},
+ doi = {10.1785/0120090263}
+}
+
@INPROCEEDINGS{SavWiTr05,
author = {Savage, B. and D. A. Wiens and J. Tromp},
title = {Effects of 3{D} Velocity and Attenuation in the {T}onga-{F}iji Subduction
@@ -11368,6 +11583,18 @@
doi = {10.1109/75.594858}
}
+ at ARTICLE{SuTsCh10,
+ author = {Alfeus Sunarso and Tomohiro Tsuji and Shigeomi Chono},
+ title = {{GPU}-accelerated molecular dynamics simulation for study of liquid
+ crystalline flows},
+ journal = jcp,
+ year = {2010},
+ volume = {229},
+ pages = {5486-5497},
+ number = {15},
+ doi = {10.1016/j.jcp.2010.03.047}
+}
+
@ARTICLE{Syn57,
author = {J. L. Synge},
title = {Elastic waves in anisotropic media},
@@ -11597,6 +11824,16 @@
number = {6}
}
+ at ARTICLE{EUCrust07,
+ author = {M. Tesauro and M. K. Kaban and S. A. P. L. Cloetingh},
+ title = {EuCrust-07: A new reference model for the {European} crust},
+ journal = grl,
+ year = {2008},
+ volume = {35},
+ pages = {L05313},
+ doi = {10.1029/2007GL032244}
+}
+
@ARTICLE{Tes00,
author = {Ekkehart Tessmer},
title = {Seismic finite-difference modeling with spatially varying time steps},
@@ -11963,16 +12200,6 @@
pages = {847-855}
}
- at ARTICLE{trompetal2005,
- author = {J. Tromp and C. Tape and Q. Liu},
- title = {Seismic Tomography, Adjoint Methods, Time Reversal, and Banana-Doughnut
- Kernels},
- journal = gji,
- year = {2005},
- volume = {160},
- pages = {195-216}
-}
-
@ARTICLE{TrTaLi05,
author = {Jeroen Tromp and Carl Tape and Qinya Liu},
title = {Seismic tomography, adjoint methods, time reversal and banana-doughnut
@@ -12253,6 +12480,18 @@
doi = {10.1145/1413370.1413402}
}
+ at ARTICLE{VoShKi10,
+ author = {Peter E. J. Vos and Spencer J. Sherwin and Robert M. Kirby},
+ title = {From $h$ to $p$ efficiently: Implementing finite and spectral/$hp$
+ element methods to achieve optimal performance for low- and high-order
+ discretisations},
+ journal = jcp,
+ year = {2010},
+ volume = {229},
+ pages = {5161-5181},
+ doi = {10.1016/j.jcp.2010.03.031}
+}
+
@ARTICLE{VaRoCh02,
author = {van Vossen, Robbert and Johan O. A. Robertsson and Chris H. Chapman},
title = {Finite-difference modeling of wave propagation in a fluid-solid configuration},
@@ -12534,6 +12773,19 @@
pages = {37-78}
}
+ at ARTICLE{WiStBuGh10,
+ author = {Lucas C. Wilcox and Georg Stadler and Carsten Burstedde and Omar
+ Ghattas},
+ title = {A high-order discontinuous {G}alerkin method for wave propagation
+ through coupled elastic-acoustic media},
+ journal = jcp,
+ year = {2010},
+ volume = {229},
+ pages = {9373-9396},
+ number = {24},
+ doi = {10.1016/j.jcp.2010.09.008}
+}
+
@ARTICLE{WiAm94,
author = {J. R. Williams and K. Amaratunga},
title = {Introduction to wavelets in engineering},
@@ -12726,14 +12978,15 @@
address = {Washington D.C., USA}
}
- at ARTICLE{zhang2003,
- author = {Y. Zhang, G. Zhang and N. Bleistein},
- title = {True amplitude wave equation migration arising from true amplitude
- one-way wave equations},
- journal = {Inverse Problems},
- year = {2003},
- volume = {19},
- pages = {1113-1138}
+ at ARTICLE{XuMuOsNo10,
+ author = {Jin Xu and Brahim Mustapha and Peter Ostroumov and Jerry Nolen},
+ title = {Direct {V}lasov Solvers with High-Order Spectral Element Method},
+ journal = {Commun. Comput. Phys.},
+ year = {2010},
+ volume = {8},
+ pages = {159-184},
+ number = {1},
+ doi = {10.4208/cicp.080409.051009a}
}
@ARTICLE{YaWaCh07,
@@ -12892,6 +13145,16 @@
pages = {911-926}
}
+ at ARTICLE{zhang2003,
+ author = {Y. Zhang and G. Zhang and N. Bleistein},
+ title = {True amplitude wave equation migration arising from true amplitude
+ one-way wave equations},
+ journal = {Inverse Problems},
+ year = {2003},
+ volume = {19},
+ pages = {1113-1138}
+}
+
@ARTICLE{ZhCa96,
author = {L. Zhao and A. C. Cangellaris},
title = {{GT-PML}: generalized theory of {P}erfectly {M}atched {L}ayers and
Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/figures/PKPdf_all_15s500s.pdf
===================================================================
(Binary files differ)
Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/figures/bolivia_trans.pdf
===================================================================
(Binary files differ)
Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/figures/bolivia_vertical.pdf
===================================================================
(Binary files differ)
Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/figures/vanuatu_trans.pdf
===================================================================
(Binary files differ)
Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/figures/vanuatu_vertical.pdf
===================================================================
(Binary files differ)
Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/manual_SPECFEM3D_GLOBE.pdf
===================================================================
(Binary files differ)
Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/manual_SPECFEM3D_GLOBE.tex
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/manual_SPECFEM3D_GLOBE.tex 2010-10-10 21:07:58 UTC (rev 17252)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/manual_SPECFEM3D_GLOBE.tex 2010-10-10 23:10:01 UTC (rev 17253)
@@ -112,7 +112,9 @@
The software package SPECFEM3D\_GLOBE simulates three-dimensional
global and regional seismic wave propagation based upon the spectral-element
-method (SEM). Effects due to lateral variations in compressional-wave
+method (SEM).
+The SEM is a continuous Galerkin technique, which can easily be made discontinous \citep{BeMaPa94,KoWoHu02,ChCaVi03,Kop06}; it is then a particular case of the discontinuous Galerkin technique \citep{ReHi73,FaRi99,HuHuRa99,CoKaSh00,GiHeWa02,RiWh03,MoRi05,GrScSc06,BeLaPi06,DuKa06,DeSeWh08,WiStBuGh10,DeSe10}, with optimized efficiency because of its tensorized basis functions.
+Effects due to lateral variations in compressional-wave
speed, shear-wave speed, density, a 3D crustal model, ellipticity,
topography and bathymetry, the oceans, rotation, and self-gravitation
are included. For a detailed introduction to the SEM as applied to
@@ -1540,7 +1542,7 @@
\citep{LayKanamoriAmmon2005,AmmonJiThio2005,ParkSongTromp2005}. Second,
they can be used to generate finite-frequency sensitivity kernels
that are a critical part of tomographic inversions based upon 3D reference
-models \citep{trompetal2005,LiTr06,TrKoLi08,LiTr08}. In either case, source
+models \citep{TrTaLi05,LiTr06,TrKoLi08,LiTr08}. In either case, source
parameter or velocity structure updates are sought to minimize a specific
misfit function (e.g., waveform or traveltime differences), and the
adjoint simulation provides a means of computing the gradient of the
@@ -1732,7 +1734,7 @@
discontinuity, CMB and ICB. These kernel files are also saved in the
local scratch directory defined by \texttt{LOCAL\_PATH }and have names
such as \texttt{proc??????\_reg\_1(2)\_Moho(d400,d670,CMB,ICB)\_kernel.bin}.
-For a theoretical derivation of the boundary kernels, refer to \citet{trompetal2005},
+For a theoretical derivation of the boundary kernels, refer to \citet{TrTaLi05},
and for the visualization of the boundary kernels, refer to Section
\ref{sec:Finite-Frequency-Kernels}.
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