[cig-commits] r17263 - in seismo/3D: SPECFEM3D/trunk SPECFEM3D/trunk/USER_MANUAL SPECFEM3D/trunk/USER_MANUAL/figures SPECFEM3D_GLOBE/trunk SPECFEM3D_GLOBE/trunk/USER_MANUAL SPECFEM3D_GLOBE/trunk/USER_MANUAL/figures

dkomati1 at geodynamics.org dkomati1 at geodynamics.org
Tue Oct 12 18:39:10 PDT 2010 

Author: dkomati1
Date: 2010-10-12 18:39:09 -0700 (Tue, 12 Oct 2010)
New Revision: 17263

Modified:
   seismo/3D/SPECFEM3D/trunk/USER_MANUAL/bibliography.bib
   seismo/3D/SPECFEM3D/trunk/USER_MANUAL/figures/gauss_vs_triangle_mod.pdf
   seismo/3D/SPECFEM3D/trunk/USER_MANUAL/figures/source_timing.pdf
   seismo/3D/SPECFEM3D/trunk/USER_MANUAL/manual_SPECFEM3D.pdf
   seismo/3D/SPECFEM3D/trunk/USER_MANUAL/manual_SPECFEM3D.tex
   seismo/3D/SPECFEM3D/trunk/specfem3D.f90
   seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/bibliography.bib
   seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/figures/PKPdf_all_15s500s.pdf
   seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/figures/bolivia_trans.pdf
   seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/figures/bolivia_vertical.pdf
   seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/figures/vanuatu_trans.pdf
   seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/figures/vanuatu_vertical.pdf
   seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/manual_SPECFEM3D_GLOBE.pdf
   seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/manual_SPECFEM3D_GLOBE.tex
   seismo/3D/SPECFEM3D_GLOBE/trunk/specfem3D.f90
Log:
updated the manual and the BibTeX refences included in the source code


Modified: seismo/3D/SPECFEM3D/trunk/USER_MANUAL/bibliography.bib
===================================================================
--- seismo/3D/SPECFEM3D/trunk/USER_MANUAL/bibliography.bib	2010-10-12 22:46:52 UTC (rev 17262)
+++ seismo/3D/SPECFEM3D/trunk/USER_MANUAL/bibliography.bib	2010-10-13 01:39:09 UTC (rev 17263)
@@ -13301,3 +13301,15 @@
 	less than plus or minus one~second}
 }
 
+ at article{TrKoHjLiZhPeBoMcFrTrHu10,
+Author = {Tromp, Jeroen and Komatitsch, Dimitri and Hjoerleifsdottir, Vala and
+   Liu, Qinya and Zhu, Hejun and Peter, Daniel and Bozdag, Ebru and
+   McRitchie, Dennis and Friberg, Paul and Trabant, Chad and Hutko, Alex},
+Title = {Near real-time simulations of global {CMT} earthquakes},
+Journal = gji,
+Year = 2010,
+Volume = 183,
+Number = 1,
+Pages = 381-389,
+DOI = "10.1111/j.1365-246X.2010.04734.x",
+}

Modified: seismo/3D/SPECFEM3D/trunk/USER_MANUAL/figures/gauss_vs_triangle_mod.pdf
===================================================================
(Binary files differ)

Modified: seismo/3D/SPECFEM3D/trunk/USER_MANUAL/figures/source_timing.pdf
===================================================================
(Binary files differ)

Modified: seismo/3D/SPECFEM3D/trunk/USER_MANUAL/manual_SPECFEM3D.pdf
===================================================================
(Binary files differ)

Modified: seismo/3D/SPECFEM3D/trunk/USER_MANUAL/manual_SPECFEM3D.tex
===================================================================
--- seismo/3D/SPECFEM3D/trunk/USER_MANUAL/manual_SPECFEM3D.tex	2010-10-12 22:46:52 UTC (rev 17262)
+++ seismo/3D/SPECFEM3D/trunk/USER_MANUAL/manual_SPECFEM3D.tex	2010-10-13 01:39:09 UTC (rev 17263)
@@ -137,17 +137,18 @@
 and the Gordon Bell Awards News Release \url{www.sc-conference.org/sc2003/nr_finalaward.html }
 for details. It was a finalist again in 2008 for a run at 0.16 petaflops (sustained) on 149,784 processors of the `Jaguar' Cray XT5 system at Oak Ridge National Laboratories (USA) \citep{CaKoLaTiMiLeSnTr08}.
 
-Future improvements will include support for GPU graphics card acceleration \citep{KoMiEr09,KoErGoMi10,MiKo10}
-as well as Convolutional or Auxiliary Differential Equation Perfectly Matched absorbing Layers (C-PML or ADE-PML) \citep{KoMa07,MaKoEz08,MaKo09,MaKoGeBr10}.
+The next release of the code will include support for GPU graphics card acceleration \citep{KoMiEr09,KoErGoMi10,MiKo10}
+as well as Convolutional or Auxiliary Differential Equation Perfectly Matched absorbing Layers (C-PML or ADE-PML) \citep{KoMa07,MaKoEz08,MaKoGe08,MaKo09,MaKoGeBr10}.
 
 \section{Citation}
 
 If you use SPECFEM3D for your own research, please cite at least one
-of the following articles: \cite{TrKoLi08,ChKoViCaVaFe07,KoLiTrSuStSh04,KoTr99} or \cite{KoVi98}.
-The corresponding Bib\TeX{} entries may be found in file \texttt{USER\_MANUAL/bibliography.bib}
-or in comments at the beginning of file \texttt{specfem3D.f90}.
+of the following articles: \cite{TrKoLi08,VaCaSaKoVi99,LeChLiKoHuTr08,LeChKoHuTr09,LeKoHuTr09,KoMiEr09,KoErGoMi10,KoGoErMi10,KoLiTrSuStSh04,ChKoViCaVaFe07,MaKoDi09,KoViCh10,CaKoLaTiMiLeSnTr08,TrKoHjLiZhPeBoMcFrTrHu10,KoRiTr02,KoTr02a,KoTr02b,KoTr99} or \cite{KoVi98}.
+If you work on geophysical applications, you may be interested in citing some of these application articles as well, among others: \cite{JiTsKoTr05,KrJiKoTr06a,KrJiKoTr06b,LeChLiKoHuTr08,LeChKoHuTr09,LeKoHuTr09,ChFaKo04,FaChKo04,RiRiKoTrHe02,GoAmTaCaSmSaMaKo09,TrKo00,SaKoTr10}.
+The corresponding Bib\TeX{} entries may be found
+in file \texttt{USER\_MANUAL/bibliography.bib} or in comments at the
+beginning of file \texttt{specfem3D.f90}.
 
-
 \section{Support}
 
 This material is based upon work supported by the USA National Science

Modified: seismo/3D/SPECFEM3D/trunk/specfem3D.f90
===================================================================
--- seismo/3D/SPECFEM3D/trunk/specfem3D.f90	2010-10-12 22:46:52 UTC (rev 17262)
+++ seismo/3D/SPECFEM3D/trunk/specfem3D.f90	2010-10-13 01:39:09 UTC (rev 17263)
@@ -51,6 +51,88 @@
 !
 ! or
 !
+! @ARTICLE{VaCaSaKoVi99,
+! author = {R. Vai and J. M. Castillo-Covarrubias and F. J. S\'anchez-Sesma and
+! D. Komatitsch and J. P. Vilotte},
+! title = {Elastic wave propagation in an irregularly layered medium},
+! journal = {Soil Dynamics and Earthquake Engineering},
+! year = {1999},
+! volume = {18},
+! pages = {11-18},
+! number = {1},
+! doi = {10.1016/S0267-7261(98)00027-X}}
+!
+! @ARTICLE{LeChKoHuTr09,
+! author = {Shiann Jong Lee and Yu Chang Chan and Dimitri Komatitsch and Bor
+! Shouh Huang and Jeroen Tromp},
+! title = {Effects of realistic surface topography on seismic ground motion
+! in the {Y}angminshan region of {T}aiwan based upon the spectral-element
+! method and {LiDAR DTM}},
+! journal = {Bull. Seismol. Soc. Am.},
+! year = {2009},
+! volume = {99},
+! pages = {681-693},
+! number = {2A},
+! doi = {10.1785/0120080264}}
+!
+! @ARTICLE{LeChLiKoHuTr08,
+! author = {Shiann Jong Lee and How Wei Chen and Qinya Liu and Dimitri Komatitsch
+! and Bor Shouh Huang and Jeroen Tromp},
+! title = {Three-Dimensional Simulations of Seismic Wave Propagation in the
+! {T}aipei Basin with Realistic Topography Based upon the Spectral-Element Method},
+! journal = {Bull. Seismol. Soc. Am.},
+! year = {2008},
+! volume = {98},
+! pages = {253-264},
+! number = {1},
+! doi = {10.1785/0120070033}}
+!
+! @ARTICLE{LeKoHuTr09,
+! author = {S. J. Lee and Dimitri Komatitsch and B. S. Huang and J. Tromp},
+! title = {Effects of topography on seismic wave propagation: An example from
+! northern {T}aiwan},
+! journal = {Bull. Seismol. Soc. Am.},
+! year = {2009},
+! volume = {99},
+! pages = {314-325},
+! number = {1},
+! doi = {10.1785/0120080020}}
+!
+! @ARTICLE{KoErGoMi10,
+! author = {Dimitri Komatitsch and Gordon Erlebacher and Dominik G\"oddeke and
+! David Mich\'ea},
+! title = {High-order finite-element seismic wave propagation modeling with
+! {MPI} on a large {GPU} cluster},
+! journal = {J. Comput. Phys.},
+! year = {2010},
+! volume = {229},
+! pages = {7692-7714},
+! number = {20},
+! doi = {10.1016/j.jcp.2010.06.024}}
+!
+! @ARTICLE{KoGoErMi10,
+! author = {Dimitri Komatitsch and Dominik G\"oddeke and Gordon Erlebacher and
+! David Mich\'ea},
+! title = {Modeling the propagation of elastic waves using spectral elements
+! on a cluster of 192 {GPU}s},
+! journal = {Computer Science Research and Development},
+! year = {2010},
+! volume = {25},
+! pages = {75-82},
+! number = {1-2},
+! doi = {10.1007/s00450-010-0109-1}}
+!
+! @ARTICLE{KoMiEr09,
+! author = {Dimitri Komatitsch and David Mich\'ea and Gordon Erlebacher},
+! title = {Porting a high-order finite-element earthquake modeling application
+! to {NVIDIA} graphics cards using {CUDA}},
+! journal = {Journal of Parallel and Distributed Computing},
+! year = {2009},
+! volume = {69},
+! pages = {451-460},
+! number = {5},
+! doi = {10.1016/j.jpdc.2009.01.006}}
+!
 ! @ARTICLE{LiPoKoTr04,
 ! author = {Qinya Liu and Jascha Polet and Dimitri Komatitsch and Jeroen Tromp},
 ! title = {Spectral-element moment tensor inversions for earthquakes in {S}outhern {C}alifornia},

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/bibliography.bib
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/bibliography.bib	2010-10-12 22:46:52 UTC (rev 17262)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/bibliography.bib	2010-10-13 01:39:09 UTC (rev 17263)
@@ -13301,3 +13301,15 @@
 	less than plus or minus one~second}
 }
 
+ at article{TrKoHjLiZhPeBoMcFrTrHu10,
+Author = {Tromp, Jeroen and Komatitsch, Dimitri and Hjoerleifsdottir, Vala and
+   Liu, Qinya and Zhu, Hejun and Peter, Daniel and Bozdag, Ebru and
+   McRitchie, Dennis and Friberg, Paul and Trabant, Chad and Hutko, Alex},
+Title = {Near real-time simulations of global {CMT} earthquakes},
+Journal = gji,
+Year = 2010,
+Volume = 183,
+Number = 1,
+Pages = 381-389,
+DOI = "10.1111/j.1365-246X.2010.04734.x",
+}

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/figures/PKPdf_all_15s500s.pdf
===================================================================
(Binary files differ)

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/figures/bolivia_trans.pdf
===================================================================
(Binary files differ)

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/figures/bolivia_vertical.pdf
===================================================================
(Binary files differ)

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/figures/vanuatu_trans.pdf
===================================================================
(Binary files differ)

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/figures/vanuatu_vertical.pdf
===================================================================
(Binary files differ)

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/manual_SPECFEM3D_GLOBE.pdf
===================================================================
(Binary files differ)

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/manual_SPECFEM3D_GLOBE.tex
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/manual_SPECFEM3D_GLOBE.tex	2010-10-12 22:46:52 UTC (rev 17262)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/USER_MANUAL/manual_SPECFEM3D_GLOBE.tex	2010-10-13 01:39:09 UTC (rev 17263)
@@ -138,14 +138,15 @@
 and the Gordon Bell Awards News Release \url{www.sc-conference.org/sc2003/nr_finalaward.html }
 for details. It was a finalist again in 2008 for a run at 0.16 petaflops (sustained) on 149,784 processors of the `Jaguar' Cray XT5 system at Oak Ridge National Laboratories (USA) \citep{CaKoLaTiMiLeSnTr08}.
 
-Future improvements will include support for GPU graphics card acceleration \citep{KoMiEr09,KoErGoMi10,MiKo10}
-as well as Convolutional-Perfectly Matched absorbing Layers (C-PML) \citep{KoMa07,MaKoEz08,MaKo09,MaKoGeBr10}.
+The next release of the code will include support for GPU graphics card acceleration \citep{KoMiEr09,KoErGoMi10,MiKo10}
+as well as Convolutional or Auxiliary Differential Equation Perfectly Matched absorbing Layers (C-PML or ADE-PML) \citep{KoMa07,MaKoEz08,MaKoGe08,MaKo09,MaKoGeBr10}.
 
 \section{Citation}
 
-If you use SPECFEM3D\_GLOBE for your own research, please cite at
-least one of the following articles: \cite{TrKoLi08,ChKoViCaVaFe07,KoRiTr02,KoTr02a,KoTr02b,KoTr99}
-or \cite{KoVi98}. The corresponding Bib\TeX{} entries may be found
+If you use SPECFEM3D\_GLOBE for your own research, please cite at least one
+of the following articles: \cite{TrKoLi08,VaCaSaKoVi99,LeChLiKoHuTr08,LeChKoHuTr09,LeKoHuTr09,KoMiEr09,KoErGoMi10,KoGoErMi10,KoLiTrSuStSh04,ChKoViCaVaFe07,MaKoDi09,KoViCh10,CaKoLaTiMiLeSnTr08,TrKoHjLiZhPeBoMcFrTrHu10,KoRiTr02,KoTr02a,KoTr02b,KoTr99} or \cite{KoVi98}.
+If you work on geophysical applications, you may be interested in citing some of these application articles as well, among others: \cite{JiTsKoTr05,KrJiKoTr06a,KrJiKoTr06b,LeChLiKoHuTr08,LeChKoHuTr09,LeKoHuTr09,ChFaKo04,FaChKo04,RiRiKoTrHe02,GoAmTaCaSmSaMaKo09,TrKo00,SaKoTr10}.
+The corresponding Bib\TeX{} entries may be found
 in file \texttt{USER\_MANUAL/bibliography.bib} or in comments at the
 beginning of file \texttt{specfem3D.f90}.
 

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/specfem3D.f90
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/specfem3D.f90	2010-10-12 22:46:52 UTC (rev 17262)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/specfem3D.f90	2010-10-13 01:39:09 UTC (rev 17263)
@@ -61,6 +61,88 @@
 !
 ! or
 !
+! @ARTICLE{VaCaSaKoVi99,
+! author = {R. Vai and J. M. Castillo-Covarrubias and F. J. S\'anchez-Sesma and
+! D. Komatitsch and J. P. Vilotte},
+! title = {Elastic wave propagation in an irregularly layered medium},
+! journal = {Soil Dynamics and Earthquake Engineering},
+! year = {1999},
+! volume = {18},
+! pages = {11-18},
+! number = {1},
+! doi = {10.1016/S0267-7261(98)00027-X}}
+!
+! @ARTICLE{LeChKoHuTr09,
+! author = {Shiann Jong Lee and Yu Chang Chan and Dimitri Komatitsch and Bor
+! Shouh Huang and Jeroen Tromp},
+! title = {Effects of realistic surface topography on seismic ground motion
+! in the {Y}angminshan region of {T}aiwan based upon the spectral-element
+! method and {LiDAR DTM}},
+! journal = {Bull. Seismol. Soc. Am.},
+! year = {2009},
+! volume = {99},
+! pages = {681-693},
+! number = {2A},
+! doi = {10.1785/0120080264}}
+!
+! @ARTICLE{LeChLiKoHuTr08,
+! author = {Shiann Jong Lee and How Wei Chen and Qinya Liu and Dimitri Komatitsch
+! and Bor Shouh Huang and Jeroen Tromp},
+! title = {Three-Dimensional Simulations of Seismic Wave Propagation in the
+! {T}aipei Basin with Realistic Topography Based upon the Spectral-Element Method},
+! journal = {Bull. Seismol. Soc. Am.},
+! year = {2008},
+! volume = {98},
+! pages = {253-264},
+! number = {1},
+! doi = {10.1785/0120070033}}
+!
+! @ARTICLE{LeKoHuTr09,
+! author = {S. J. Lee and Dimitri Komatitsch and B. S. Huang and J. Tromp},
+! title = {Effects of topography on seismic wave propagation: An example from
+! northern {T}aiwan},
+! journal = {Bull. Seismol. Soc. Am.},
+! year = {2009},
+! volume = {99},
+! pages = {314-325},
+! number = {1},
+! doi = {10.1785/0120080020}}
+!
+! @ARTICLE{KoErGoMi10,
+! author = {Dimitri Komatitsch and Gordon Erlebacher and Dominik G\"oddeke and
+! David Mich\'ea},
+! title = {High-order finite-element seismic wave propagation modeling with
+! {MPI} on a large {GPU} cluster},
+! journal = {J. Comput. Phys.},
+! year = {2010},
+! volume = {229},
+! pages = {7692-7714},
+! number = {20},
+! doi = {10.1016/j.jcp.2010.06.024}}
+!
+! @ARTICLE{KoGoErMi10,
+! author = {Dimitri Komatitsch and Dominik G\"oddeke and Gordon Erlebacher and
+! David Mich\'ea},
+! title = {Modeling the propagation of elastic waves using spectral elements
+! on a cluster of 192 {GPU}s},
+! journal = {Computer Science Research and Development},
+! year = {2010},
+! volume = {25},
+! pages = {75-82},
+! number = {1-2},
+! doi = {10.1007/s00450-010-0109-1}}
+!
+! @ARTICLE{KoMiEr09,
+! author = {Dimitri Komatitsch and David Mich\'ea and Gordon Erlebacher},
+! title = {Porting a high-order finite-element earthquake modeling application
+! to {NVIDIA} graphics cards using {CUDA}},
+! journal = {Journal of Parallel and Distributed Computing},
+! year = {2009},
+! volume = {69},
+! pages = {451-460},
+! number = {5},
+! doi = {10.1016/j.jpdc.2009.01.006}}
+!
 ! @INCOLLECTION{ChKoViCaVaFe07,
 ! author = {Emmanuel Chaljub and Dimitri Komatitsch and Jean-Pierre Vilotte and
 ! Yann Capdeville and Bernard Valette and Gaetano Festa},

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