[cig-commits] r18186 - in seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D: . REF_SEIS
carltape at geodynamics.org
carltape at geodynamics.org
Wed Apr 6 10:50:35 PDT 2011
Author: carltape
Date: 2011-04-06 10:50:34 -0700 (Wed, 06 Apr 2011)
New Revision: 18186
Added:
seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/Mesh_Par_file_001
seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/Mesh_Par_file_042
seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/
seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/LCG.CI.HXE.semd
seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/LCG.CI.HXN.semd
seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/LCG.CI.HXZ.semd
seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SMF.CI.HXE.semd
seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SMF.CI.HXN.semd
seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SMF.CI.HXZ.semd
seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SMS.CI.HXE.semd
seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SMS.CI.HXN.semd
seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SMS.CI.HXZ.semd
seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SPF.CI.HXE.semd
seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SPF.CI.HXN.semd
seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SPF.CI.HXZ.semd
seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/USC.CI.HXE.semd
seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/USC.CI.HXN.semd
seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/USC.CI.HXZ.semd
seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/WTT.CI.HXE.semd
seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/WTT.CI.HXN.semd
seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/WTT.CI.HXZ.semd
Modified:
seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/README
Log:
added reference seismograms for socal1D example.
Added: seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/Mesh_Par_file_001
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/Mesh_Par_file_001 (rev 0)
+++ seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/Mesh_Par_file_001 2011-04-06 17:50:34 UTC (rev 18186)
@@ -0,0 +1,58 @@
+
+# coordinates of mesh block in latitude/longitude and depth in km
+LATITUDE_MIN = 33.790d0
+LATITUDE_MAX = 34.157d0
+LONGITUDE_MIN = -118.728d0
+LONGITUDE_MAX = -118.237d0
+DEPTH_BLOCK_KM = 60.d0
+UTM_PROJECTION_ZONE = 11
+SUPPRESS_UTM_PROJECTION = .false.
+
+# file that contains the interfaces of the model / mesh
+INTERFACES_FILE = interfaces.dat
+
+# number of elements at the surface along edges of the mesh at the surface
+# (must be 8 * multiple of NPROC below if mesh is not regular and contains mesh doublings)
+# (must be multiple of NPROC below if mesh is regular)
+NEX_XI = 24
+NEX_ETA = 24
+
+# number of MPI processors along xi and eta (can be different)
+NPROC_XI = 1
+NPROC_ETA = 1
+
+# Regular/irregular mesh
+USE_REGULAR_MESH = .false.
+# Only for irregular meshes, number of doubling layers (1 or 2) and their position
+NDOUBLINGS = 2
+# NZ_DOUGLING_1 is the parameter to set up if there is only one doubling layer
+NZ_DOUGLING_1 = 6
+NZ_DOUGLING_2 = 9
+
+# create mesh files for visualisation or further checking
+CREATE_ABAQUS_FILES = .true.
+CREATE_DX_FILES = .true.
+
+# path to store the databases files
+LOCAL_PATH = ../in_out_files/DATABASES_MPI
+
+# number of materials
+NMATERIALS = 4
+# define the different materials in the model as :
+# #material_id #rho #vp #vs #Q #anisotropy_flag #domain_id
+# Q : quality factor
+# anisotropy_flag : 0=no anisotropy/ 1,2,.. check with implementation in aniso_model.f90
+# domain_id : 1=acoustic / 2=elastic
+1 3000 7800 4500 0.0 0 2
+2 2800 6700 3870 0.0 0 2
+3 2670 6300 3640 0.0 0 2
+4 2400 5500 3180 0.0 0 2
+# number of regions
+NREGIONS = 4
+# define the different regions of the model as :
+#NEX_XI_BEGIN #NEX_XI_END #NEX_ETA_BEGIN #NEX_ETA_END #NZ_BEGIN #NZ_END #material_id
+1 24 1 24 1 3 1
+1 24 1 24 4 6 2
+1 24 1 24 7 9 3
+1 24 1 24 10 12 4
+
Added: seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/Mesh_Par_file_042
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/Mesh_Par_file_042 (rev 0)
+++ seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/Mesh_Par_file_042 2011-04-06 17:50:34 UTC (rev 18186)
@@ -0,0 +1,58 @@
+
+# coordinates of mesh block in latitude/longitude and depth in km
+LATITUDE_MIN = 32.2d0
+LATITUDE_MAX = 36.8d0
+LONGITUDE_MIN = -121.6d0
+LONGITUDE_MAX = -114.7d0
+DEPTH_BLOCK_KM = 60.d0
+UTM_PROJECTION_ZONE = 11
+SUPPRESS_UTM_PROJECTION = .false.
+
+# file that contains the interfaces of the model / mesh
+INTERFACES_FILE = interfaces.dat
+
+# number of elements at the surface along edges of the mesh at the surface
+# (must be 8 * multiple of NPROC below if mesh is not regular and contains mesh doublings)
+# (must be multiple of NPROC below if mesh is regular)
+NEX_XI = 336
+NEX_ETA = 288
+
+# number of MPI processors along xi and eta (can be different)
+NPROC_XI = 7
+NPROC_ETA = 6
+
+# Regular/irregular mesh
+USE_REGULAR_MESH = .false.
+# Only for irregular meshes, number of doubling layers (1 or 2) and their position
+NDOUBLINGS = 2
+# NZ_DOUGLING_1 is the parameter to set up if there is only one doubling layer
+NZ_DOUGLING_1 = 6
+NZ_DOUGLING_2 = 9
+
+# create mesh files for visualisation or further checking
+CREATE_ABAQUS_FILES = .true.
+CREATE_DX_FILES = .true.
+
+# path to store the databases files
+LOCAL_PATH = ../in_out_files/DATABASES_MPI
+
+# number of materials
+NMATERIALS = 4
+# define the different materials in the model as :
+# #material_id #rho #vp #vs #Q #anisotropy_flag #domain_id
+# Q : quality factor
+# anisotropy_flag : 0=no anisotropy/ 1,2,.. check with implementation in aniso_model.f90
+# domain_id : 1=acoustic / 2=elastic
+1 3000 7800 4500 0.0 0 2
+2 2800 6700 3870 0.0 0 2
+3 2670 6300 3640 0.0 0 2
+4 2400 5500 3180 0.0 0 2
+# number of regions
+NREGIONS = 4
+# define the different regions of the model as :
+#NEX_XI_BEGIN #NEX_XI_END #NEX_ETA_BEGIN #NEX_ETA_END #NZ_BEGIN #NZ_END #material_id
+1 336 1 288 1 3 1
+1 336 1 288 4 6 2
+1 336 1 288 7 9 3
+1 336 1 288 10 12 4
+
Modified: seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/README
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/README 2011-04-06 16:39:08 UTC (rev 18185)
+++ seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/README 2011-04-06 17:50:34 UTC (rev 18186)
@@ -21,7 +21,7 @@
0. Run the default homogeneous halfspace example (external mesh).
-1. Set up input files.
+1. set up input files:
> cd SPECFEM3D
> rsync -av examples/meshfem3D_examples/socal1D/ in_data_files/meshfem3D_files/
@@ -35,27 +35,25 @@
- note: go_decomposer_pbs.bash is not used with the internal mesher
-2. compile and run internal mesher
+2. generate internal mesh:
- > make xmeshfem3D
+ - compile and run meshfem3D:
+ > make xmeshfem3D
+ > qsub go_mesher_pbs.bash
- > qsub go_mesher_pbs.bash
+ this should generate these files in in_out_files/DATABASES_MPI/:
- This should generate these files in in_out_files/DATABASES_MPI/:
+ proc000000_Database
+ proc000000_.dx
+ proc000000_.INP
- proc000000_Database
- proc000000_.dx
- proc000000_.INP
+ - save output file:
+ > cp in_out_files/OUTPUT_FILES/output_mesher.txt in_out_files/OUTPUT_FILES/output_meshfem3D.txt
- - save output file
- > cp in_out_files/OUTPUT_FILES/output_mesher.txt in_out_files/OUTPUT_FILES/output_meshfem3D.txt
-
3. generate databases:
- - compile generate_databases in directory SPECFEM3D/:
+ - compile and run generate_databases:
> make xgenerate_databases
-
- - submit job script:
> qsub go_generate_databases_pbs.bash
this will create binary mesh files, e.g. "proc000***_external_mesh.bin"
@@ -65,10 +63,8 @@
4. run simulation:
- - compile specfem3D:
+ - compile and run specfem3D:
> make xspecfem3D
-
- - submit job script:
> qsub go_solver_pbs.bash
- the job should take about 2 minutes
@@ -77,8 +73,11 @@
as well as 9 timestamp****** files
- view seismograms, for example, using xmgrace:
- - xmgrace WTT*.semd &
+ > xmgrace WTT*.semd &
+ - compare with reference seismograms, e.g.:
+ > xmgrace WTT.CI.HXZ.semd ../../examples/meshfem3D_examples/socal1D/REF_SEIS/WTT.CI.HXZ.semd &
+
----------------------------------------------------------------------
To use the same 1D model but covering a larger region using 168 cores, follow these steps.
@@ -91,7 +90,7 @@
- open Par_file and modify NPROC: NPROC = 1 --> NPROC = 168
- > cp Par_file CMTSOLUTION STATIONS ..
+ > cp Par_file ..
> cd ../../
- adapt the submission scripts for the appropriate queues (-q) and number of cores (-l):
@@ -99,6 +98,32 @@
3. Follow steps 2-4 above.
- note: slice 62 (out of 0-167) should contain the source and correspond to the 1-slice example above.
+ - slice 62 (out of 0-167) corresponds to the 1-slice example above and should contain the source.
+ - simulation should take about 1 minute.
+ - seismograms will not exactly match those in REF_SEIS, since the simulation volume is different.
----------------------------------------------------------------------
+To run the same simulation but using 42 cores, follow these steps.
+
+1. modify Mesh_Par_file:
+
+ > cd in_data_files/meshfem3D_files
+ > cp Mesh_Par_file_042 Mesh_Par_file
+
+2. modify Par_file:
+
+ - open Par_file and modify NPROC: NPROC = 168 --> NPROC = 42
+
+ > cp Par_file ..
+ > cd ../../
+
+ - adapt the submission scripts for the appropriate queues (-q) and number of cores (-l):
+ go_mesher_pbs.bash, go_generate_databases_pbs.bash, go_solver_pbs.bash
+
+3. Follow steps 2-4 above.
+
+ - slice 17 (out of 0-41) should contain the source.
+ - simulation should take about 5 minutes.
+ - seismograms will not exactly match those in REF_SEIS, since the simulation volume is different.
+
+----------------------------------------------------------------------
\ No newline at end of file
Added: seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/LCG.CI.HXE.semd
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/LCG.CI.HXE.semd (rev 0)
+++ seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/LCG.CI.HXE.semd 2011-04-06 17:50:34 UTC (rev 18186)
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Added: seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/LCG.CI.HXN.semd
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/LCG.CI.HXN.semd (rev 0)
+++ seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/LCG.CI.HXN.semd 2011-04-06 17:50:34 UTC (rev 18186)
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Added: seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/LCG.CI.HXZ.semd
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/LCG.CI.HXZ.semd (rev 0)
+++ seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/LCG.CI.HXZ.semd 2011-04-06 17:50:34 UTC (rev 18186)
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Added: seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SMF.CI.HXE.semd
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SMF.CI.HXE.semd (rev 0)
+++ seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SMF.CI.HXE.semd 2011-04-06 17:50:34 UTC (rev 18186)
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Added: seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SMF.CI.HXN.semd
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SMF.CI.HXN.semd (rev 0)
+++ seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SMF.CI.HXN.semd 2011-04-06 17:50:34 UTC (rev 18186)
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Added: seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SMF.CI.HXZ.semd
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SMF.CI.HXZ.semd (rev 0)
+++ seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SMF.CI.HXZ.semd 2011-04-06 17:50:34 UTC (rev 18186)
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Added: seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SMS.CI.HXE.semd
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SMS.CI.HXE.semd (rev 0)
+++ seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SMS.CI.HXE.semd 2011-04-06 17:50:34 UTC (rev 18186)
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Added: seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SMS.CI.HXN.semd
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SMS.CI.HXN.semd (rev 0)
+++ seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SMS.CI.HXN.semd 2011-04-06 17:50:34 UTC (rev 18186)
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Added: seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SMS.CI.HXZ.semd
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SMS.CI.HXZ.semd (rev 0)
+++ seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SMS.CI.HXZ.semd 2011-04-06 17:50:34 UTC (rev 18186)
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Added: seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SPF.CI.HXE.semd
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SPF.CI.HXE.semd (rev 0)
+++ seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SPF.CI.HXE.semd 2011-04-06 17:50:34 UTC (rev 18186)
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Added: seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SPF.CI.HXN.semd
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SPF.CI.HXN.semd (rev 0)
+++ seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SPF.CI.HXN.semd 2011-04-06 17:50:34 UTC (rev 18186)
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Added: seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SPF.CI.HXZ.semd
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SPF.CI.HXZ.semd (rev 0)
+++ seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/SPF.CI.HXZ.semd 2011-04-06 17:50:34 UTC (rev 18186)
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Added: seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/USC.CI.HXE.semd
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/USC.CI.HXE.semd (rev 0)
+++ seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/USC.CI.HXE.semd 2011-04-06 17:50:34 UTC (rev 18186)
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Added: seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/USC.CI.HXN.semd
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/USC.CI.HXN.semd (rev 0)
+++ seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/USC.CI.HXN.semd 2011-04-06 17:50:34 UTC (rev 18186)
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Added: seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/USC.CI.HXZ.semd
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/USC.CI.HXZ.semd (rev 0)
+++ seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/USC.CI.HXZ.semd 2011-04-06 17:50:34 UTC (rev 18186)
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Added: seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/WTT.CI.HXE.semd
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/WTT.CI.HXE.semd (rev 0)
+++ seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/WTT.CI.HXE.semd 2011-04-06 17:50:34 UTC (rev 18186)
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Added: seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/WTT.CI.HXN.semd
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/WTT.CI.HXN.semd (rev 0)
+++ seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/WTT.CI.HXN.semd 2011-04-06 17:50:34 UTC (rev 18186)
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Added: seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/WTT.CI.HXZ.semd
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/WTT.CI.HXZ.semd (rev 0)
+++ seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/REF_SEIS/WTT.CI.HXZ.semd 2011-04-06 17:50:34 UTC (rev 18186)
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