[cig-commits] r18200 - in seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES: . regional_Greece_small regional_Greece_small/DATA regional_Greece_small/REF_SEIS regional_Greece_small/SEM
danielpeter at geodynamics.org
danielpeter at geodynamics.org
Thu Apr 7 20:45:35 PDT 2011
Author: danielpeter
Date: 2011-04-07 20:45:35 -0700 (Thu, 07 Apr 2011)
New Revision: 18200
Added:
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/DATA/
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/DATA/CMTSOLUTION
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/DATA/Par_file
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/DATA/STATIONS
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/README
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/BEKI.YL.MXE.sem.ascii
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/BEKI.YL.MXN.sem.ascii
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/BEKI.YL.MXZ.sem.ascii
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/BGIO.SR.MXE.sem.ascii
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/BGIO.SR.MXN.sem.ascii
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/BGIO.SR.MXZ.sem.ascii
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/GRFO.IU.MXE.sem.ascii
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/GRFO.IU.MXN.sem.ascii
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/GRFO.IU.MXZ.sem.ascii
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/LIT.HT.MXE.sem.ascii
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/LIT.HT.MXN.sem.ascii
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/LIT.HT.MXZ.sem.ascii
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/S001.XS.MXE.sem.ascii
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/S001.XS.MXN.sem.ascii
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/S001.XS.MXZ.sem.ascii
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/ZKR.GE.MXE.sem.ascii
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/ZKR.GE.MXN.sem.ascii
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/ZKR.GE.MXZ.sem.ascii
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/SEM/
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/SEM/BEKI.YL.MXZ.adj
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/SEM/README
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/SEM/STATIONS_ADJOINT
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/SEM/create_adjoint_source.sh
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/image_alpha_kernel.jpg
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/image_beta_kernel.jpg
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/image_rho_kernel.jpg
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/image_vs.jpg
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/paraviewpython-example.py
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/process.kernel.sh
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/process.sh
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/run_mesher_solver.bash
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/run_mesher_solver.kernel.bash
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/state_alpha_kernel.pvsm
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/state_beta_kernel.pvsm
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/state_rho_kernel.pvsm
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/state_vs.pvsm
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/xcombine_vol_data.sh
seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/xcombine_vol_data.vs.sh
Log:
adds small regional example for Greece to run on a desktop machine
Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/DATA/CMTSOLUTION
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/DATA/CMTSOLUTION (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/DATA/CMTSOLUTION 2011-04-08 03:45:35 UTC (rev 18200)
@@ -0,0 +1,13 @@
+PDEW 2008 1 6 5 14 23.70 37.2200 22.6900 75.0 6.1 6.2 SOUTHERN GREECE
+event name: 200801060514A
+time shift: 0.000
+half duration: 3.0000
+latitude: 36.9800
+longitude: 22.8700
+depth: 92.3900
+Mrr: 7.740000e+24
+Mtt: -1.830000e+25
+Mpp: 1.060000e+25
+Mrt: 1.290000e+25
+Mrp: -8.450000e+24
+Mtp: -4.430000e+24
Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/DATA/Par_file
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/DATA/Par_file (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/DATA/Par_file 2011-04-08 03:45:35 UTC (rev 18200)
@@ -0,0 +1,114 @@
+
+# forward or adjoint simulation
+SIMULATION_TYPE = 1
+NOISE_TOMOGRAPHY = 0 # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
+SAVE_FORWARD = .false. # save last frame of forward simulation or not
+
+# number of chunks (1,2,3 or 6)
+NCHUNKS = 1
+
+# angular width of the first chunk (not used if full sphere with six chunks)
+ANGULAR_WIDTH_XI_IN_DEGREES = 20.d0 # angular size of a chunk
+ANGULAR_WIDTH_ETA_IN_DEGREES = 20.d0
+CENTER_LATITUDE_IN_DEGREES = 40.d0
+CENTER_LONGITUDE_IN_DEGREES = 25.d0
+GAMMA_ROTATION_AZIMUTH = 0.d0
+
+# number of elements at the surface along the two sides of the first chunk
+# (must be multiple of 16 and 8 * multiple of NPROC below)
+NEX_XI = 64
+NEX_ETA = 64
+
+# number of MPI processors along the two sides of the first chunk
+NPROC_XI = 2
+NPROC_ETA = 2
+
+# 1D models with real structure:
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso
+#
+# 1D models with only one fictitious averaged crustal layer:
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+#
+# fully 3D models:
+# transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
+# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
+# s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
+MODEL = 1D_transversely_isotropic_prem
+
+# parameters describing the Earth model
+OCEANS = .true.
+ELLIPTICITY = .true.
+TOPOGRAPHY = .true.
+GRAVITY = .true.
+ROTATION = .true.
+ATTENUATION = .true.
+
+# absorbing boundary conditions for a regional simulation
+ABSORBING_CONDITIONS = .true.
+
+# record length in minutes
+RECORD_LENGTH_IN_MINUTES = 2.5d0
+
+# save AVS or OpenDX movies
+MOVIE_SURFACE = .false.
+MOVIE_VOLUME = .false.
+MOVIE_COARSE = .true.
+NTSTEP_BETWEEN_FRAMES = 50
+HDUR_MOVIE = 0.d0
+
+# save movie in volume. Will save element if center of element is in prescribed volume
+# top/bottom: depth in KM, use MOVIE_TOP = -100 to make sure the surface is stored.
+# west/east: longitude, degrees East [-180/180] top/bottom: latitute, degrees North [-90/90]
+# start/stop: frames will be stored at MOVIE_START + i*NSTEP_BETWEEN_FRAMES, where i=(0,1,2..) and iNSTEP_BETWEEN_FRAMES <= MOVIE_STOP
+# movie_volume_type: 1=strain, 2=time integral of strain, 3=\mu*time integral of strain
+# type 4 saves the trace and deviatoric stress in the whole volume, 5=displacement, 6=velocity
+#MOVIE_VOLUME_COARSE saves movie only at corners of elements
+MOVIE_VOLUME_TYPE = 2
+MOVIE_TOP_KM = -100.0
+MOVIE_BOTTOM_KM = 1000.0
+MOVIE_WEST_DEG = -90.0
+MOVIE_EAST_DEG = 90.0
+MOVIE_NORTH_DEG = 90.0
+MOVIE_SOUTH_DEG = -90.0
+MOVIE_START = 0
+MOVIE_STOP = 40000
+
+# save mesh files to check the mesh
+SAVE_MESH_FILES = .true.
+
+# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+NUMBER_OF_RUNS = 1
+NUMBER_OF_THIS_RUN = 1
+
+# path to store the local database files on each node
+LOCAL_PATH = ./DATABASES_MPI
+
+# interval at which we output time step info and max of norm of displacement
+NTSTEP_BETWEEN_OUTPUT_INFO = 50
+
+# interval in time steps for temporary writing of seismograms
+NTSTEP_BETWEEN_OUTPUT_SEISMOS = 5000000
+NTSTEP_BETWEEN_READ_ADJSRC = 1000
+
+# output format for the seismograms (one can use either or all of the three formats)
+OUTPUT_SEISMOS_ASCII_TEXT = .true.
+OUTPUT_SEISMOS_SAC_ALPHANUM = .false.
+OUTPUT_SEISMOS_SAC_BINARY = .false.
+
+# rotate seismograms to Radial-Transverse-Z or use default North-East-Z reference frame
+ROTATE_SEISMOGRAMS_RT = .false.
+
+# decide if master process writes all the seismograms or if all processes do it in parallel
+WRITE_SEISMOGRAMS_BY_MASTER = .false.
+
+# save all seismograms in one large combined file instead of one file per seismogram
+# to avoid overloading shared non-local file systems such as GPFS for instance
+SAVE_ALL_SEISMOS_IN_ONE_FILE = .false.
+USE_BINARY_FOR_LARGE_FILE = .false.
+
+# flag to impose receivers at the surface or allow them to be buried
+RECEIVERS_CAN_BE_BURIED = .true.
+
+# print source time function
+PRINT_SOURCE_TIME_FUNCTION = .false.
+
Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/DATA/STATIONS
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/DATA/STATIONS (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/DATA/STATIONS 2011-04-08 03:45:35 UTC (rev 18200)
@@ -0,0 +1,6 @@
+GRFO IU 49.6909 11.2203 384.0 116.0
+BEKI YL 41.31500 34.26300 1415.0 0.0
+BGIO SR 31.72200 35.08780 752.0 100.0
+LIT HT 40.10080 22.49000 480.0 0.0
+ZKR GE 35.11470 26.21700 270.0 0.0
+S001 XS 37.28300 21.71800 156.0 0.0
Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/README
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/README (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/README 2011-04-08 03:45:35 UTC (rev 18200)
@@ -0,0 +1,41 @@
+----------------------------------------------------------
+README
+----------------------------------------------------------
+
+This example creates a regional mesh using transversely isotropic PREM
+and runs a spectral-element simulation.
+
+The simulation is setup to use 4 CPUs only, thus can be run locally on a desktop machine
+(needs to have MPI installed).
+
+
+1. forward simulation:
+----------------------
+
+type:
+./process.sh
+
+to setup this directory for the simulation and to run a corresponding
+script "run_mesher_solver_pbs.bash".
+
+The simulation is accurate down to a shortest period of ~ 15 s.
+(minimum period resolved ~ (256/NEX_XI) * (ANGULAR_WIDTH_XI_IN_DEGREES/90) * 17)
+
+Reference seismograms for comparisons are provided in the directory: REF_SEIS/
+
+
+2. kernel simulation:
+---------------------
+
+type:
+./process.kernel.sh
+
+to setup this directory for the simulation and to submit a corresponding
+PBS-job script "run_mesher_solver_pbs.kernel.bash".
+
+The simulation will use the adjoint source given in directory: SEM/
+to compute a travel-time sensitivity kernel.
+
+
+Please modify these scripts according to your specifics.
+
Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/BEKI.YL.MXE.sem.ascii
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/BEKI.YL.MXE.sem.ascii (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/BEKI.YL.MXE.sem.ascii 2011-04-08 03:45:35 UTC (rev 18200)
@@ -0,0 +1,1200 @@
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Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/BEKI.YL.MXN.sem.ascii
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/BEKI.YL.MXN.sem.ascii (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/BEKI.YL.MXN.sem.ascii 2011-04-08 03:45:35 UTC (rev 18200)
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Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/BEKI.YL.MXZ.sem.ascii
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/BEKI.YL.MXZ.sem.ascii (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/BEKI.YL.MXZ.sem.ascii 2011-04-08 03:45:35 UTC (rev 18200)
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Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/BGIO.SR.MXE.sem.ascii
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/BGIO.SR.MXE.sem.ascii (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/BGIO.SR.MXE.sem.ascii 2011-04-08 03:45:35 UTC (rev 18200)
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Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/BGIO.SR.MXN.sem.ascii
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/BGIO.SR.MXN.sem.ascii (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/BGIO.SR.MXN.sem.ascii 2011-04-08 03:45:35 UTC (rev 18200)
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Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/BGIO.SR.MXZ.sem.ascii
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/BGIO.SR.MXZ.sem.ascii (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/BGIO.SR.MXZ.sem.ascii 2011-04-08 03:45:35 UTC (rev 18200)
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Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/GRFO.IU.MXE.sem.ascii
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/GRFO.IU.MXE.sem.ascii (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/GRFO.IU.MXE.sem.ascii 2011-04-08 03:45:35 UTC (rev 18200)
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Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/GRFO.IU.MXN.sem.ascii
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/GRFO.IU.MXN.sem.ascii (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/GRFO.IU.MXN.sem.ascii 2011-04-08 03:45:35 UTC (rev 18200)
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Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/GRFO.IU.MXZ.sem.ascii
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/GRFO.IU.MXZ.sem.ascii (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/GRFO.IU.MXZ.sem.ascii 2011-04-08 03:45:35 UTC (rev 18200)
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Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/LIT.HT.MXE.sem.ascii
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/LIT.HT.MXE.sem.ascii (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/LIT.HT.MXE.sem.ascii 2011-04-08 03:45:35 UTC (rev 18200)
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Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/LIT.HT.MXN.sem.ascii
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/LIT.HT.MXN.sem.ascii (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/LIT.HT.MXN.sem.ascii 2011-04-08 03:45:35 UTC (rev 18200)
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Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/LIT.HT.MXZ.sem.ascii
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/LIT.HT.MXZ.sem.ascii (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/LIT.HT.MXZ.sem.ascii 2011-04-08 03:45:35 UTC (rev 18200)
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Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/S001.XS.MXE.sem.ascii
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/S001.XS.MXE.sem.ascii (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/S001.XS.MXE.sem.ascii 2011-04-08 03:45:35 UTC (rev 18200)
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Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/S001.XS.MXN.sem.ascii
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/S001.XS.MXN.sem.ascii (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/S001.XS.MXN.sem.ascii 2011-04-08 03:45:35 UTC (rev 18200)
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Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/S001.XS.MXZ.sem.ascii
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/S001.XS.MXZ.sem.ascii (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/S001.XS.MXZ.sem.ascii 2011-04-08 03:45:35 UTC (rev 18200)
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Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/ZKR.GE.MXE.sem.ascii
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/ZKR.GE.MXE.sem.ascii (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/ZKR.GE.MXE.sem.ascii 2011-04-08 03:45:35 UTC (rev 18200)
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Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/ZKR.GE.MXN.sem.ascii
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/ZKR.GE.MXN.sem.ascii (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/ZKR.GE.MXN.sem.ascii 2011-04-08 03:45:35 UTC (rev 18200)
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Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/ZKR.GE.MXZ.sem.ascii
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/ZKR.GE.MXZ.sem.ascii (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/REF_SEIS/ZKR.GE.MXZ.sem.ascii 2011-04-08 03:45:35 UTC (rev 18200)
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Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/SEM/BEKI.YL.MXZ.adj
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/SEM/BEKI.YL.MXZ.adj (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/SEM/BEKI.YL.MXZ.adj 2011-04-08 03:45:35 UTC (rev 18200)
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Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/SEM/README
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/SEM/README (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/SEM/README 2011-04-08 03:45:35 UTC (rev 18200)
@@ -0,0 +1,24 @@
+----------------------------------------------------------
+README
+----------------------------------------------------------
+
+This directory contains a travel-time adjoint source for
+station:
+
+BEKI - Bekirli, North Anatolian Fault Passive Seismic Experiment (http://www.iris.edu/mda/YL/BEKI?timewindow=2005-2008)
+
+
+The adjoint source files were created by:
+ > ./create_adjoint_source.sh
+
+
+The time window is taken from 130 to 147.5 s. According to phtimes, it includes:
+ Pn 138.60
+
+note: the adjoint stations file STATIONS_ADJOINT must be copied over into directory DATA/
+ for the setup of the kernel simulation. the script "process.kernel.sh" does this for you.
+
+ Keep in mind that these adjoint source files are setup specifically for this
+ default example and must match the duration length of the forward simulation.
+ Changing the simulation length would require to recalculate these files.
+
Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/SEM/STATIONS_ADJOINT
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/SEM/STATIONS_ADJOINT (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/SEM/STATIONS_ADJOINT 2011-04-08 03:45:35 UTC (rev 18200)
@@ -0,0 +1 @@
+BEKI YL 41.31500 34.26300 1415.0 0.0
Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/SEM/create_adjoint_source.sh
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/SEM/create_adjoint_source.sh (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/SEM/create_adjoint_source.sh 2011-04-08 03:45:35 UTC (rev 18200)
@@ -0,0 +1,25 @@
+#!/bin/bash
+#
+# creates adjoint source files
+#
+# note: run this script in directory SEM/
+#############################################################
+
+# station
+station="BEKI"
+network="YL"
+
+# time window
+t1="130.0"
+t2="147.5"
+
+#window out single phase arrival on vertical component between t1 to t2 :
+~/SPECFEM3D_GLOBE/UTILS/adjoint_sources/traveltime/xcreate_adjsrc_traveltime $t1 $t2 3 ../REF_SEIS/$station.$network.MX*
+mv ../REF_SEIS/$station.$network.MX*adj ./
+
+# rename adjoint source files:
+rename .sem.ascii.adj .adj $station.$network.MX*adj
+
+# create STATIONS_ADJOINT file with adjoint source location
+fgrep $station ../DATA/STATIONS > ./STATIONS_ADJOINT
+
Property changes on: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/SEM/create_adjoint_source.sh
___________________________________________________________________
Name: svn:executable
+ *
Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/image_alpha_kernel.jpg
===================================================================
(Binary files differ)
Property changes on: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/image_alpha_kernel.jpg
___________________________________________________________________
Name: svn:mime-type
+ application/octet-stream
Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/image_beta_kernel.jpg
===================================================================
(Binary files differ)
Property changes on: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/image_beta_kernel.jpg
___________________________________________________________________
Name: svn:mime-type
+ application/octet-stream
Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/image_rho_kernel.jpg
===================================================================
(Binary files differ)
Property changes on: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/image_rho_kernel.jpg
___________________________________________________________________
Name: svn:mime-type
+ application/octet-stream
Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/image_vs.jpg
===================================================================
(Binary files differ)
Property changes on: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/image_vs.jpg
___________________________________________________________________
Name: svn:mime-type
+ application/octet-stream
Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/paraviewpython-example.py
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/paraviewpython-example.py (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/paraviewpython-example.py 2011-04-08 03:45:35 UTC (rev 18200)
@@ -0,0 +1,52 @@
+#! /usr/bin/env pvpython
+#
+#
+# usage: ./paraviewpython-example.py alpha_kernel.pvsm [2]
+#
+# creates jpg: image*.jpg
+
+import os
+import sys
+import fileinput
+import string
+from paraview import servermanager
+
+number = ""
+
+## input:
+if len(sys.argv) == 2:
+ filename = str(sys.argv[1])
+else :
+ if len(sys.argv) == 3:
+ filename = str(sys.argv[1])
+ number = str(sys.argv[2])
+ else :
+ print "usage: /paraviewpython-example.py alpha_kernel.pvsm "
+ sys.exit()
+
+outfile = "image"+number
+print "file root: ",outfile
+
+## paraview
+servermanager.Connect()
+view = servermanager.CreateRenderView()
+servermanager.LoadState(filename)
+view = servermanager.GetRenderView()
+
+# to avoid segmentation fault
+view.UseOffscreenRenderingForScreenshots = 0
+
+## save as jpeg
+jpegfilename = outfile+".jpg"
+print "plot to: " + jpegfilename
+view.WriteImage(jpegfilename, "vtkJPEGWriter", 1)
+print
+
+## save as png
+#print "plot to: " + "image.png"
+#view.WriteImage("image.png", "vtkPNGWriter",1)
+
+## save as bmp
+#print "plot to: " + "image.bmp"
+#view.WriteImage("image.bmp", "vtkBMPWriter",1)
+
Property changes on: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/paraviewpython-example.py
___________________________________________________________________
Name: svn:executable
+ *
Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/process.kernel.sh
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/process.kernel.sh (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/process.kernel.sh 2011-04-08 03:45:35 UTC (rev 18200)
@@ -0,0 +1,83 @@
+#!/bin/bash
+#
+# regional simulation example to compute an adjoint kernel
+#
+# script runs mesher and solver for an adjoint kernel using mpirun
+# on 4 CPUs
+#
+# modify accordingly for your own system specifics
+##################################################
+
+echo "running example: `date`"
+currentdir=`pwd`
+
+echo "directory: $currentdir"
+echo "(will take about 40 minutes)"
+echo
+
+# sets up directory structure in current example directoy
+echo
+echo " setting up example..."
+echo
+
+if [ ! -f SEM/STATIONS_ADJOINT ]; then
+ echo "must have adjoint source station files in directory: SEM/"
+ exit
+fi
+cp SEM/STATIONS_ADJOINT DATA/
+
+mkdir -p DATABASES_MPI
+mkdir -p OUTPUT_FILES
+
+rm -rf DATABASES_MPI/*
+rm -rf OUTPUT_FILES/*
+
+# compiles executables in root directory
+# using default configuration
+cd ../../
+# configures package with ifort compiler
+./configure F90=ifort MPIF90=/usr/local/openmpi-ifort/bin/mpif90 FLAGS_CHECK="-O3 -assume byterecl" FLAGS_NO_CHECK="-O3 -assume byterecl" > tmp.log
+# configures package with gfortran compiler
+#./configure F90=gfortran MPIF90=mpif90 FLAGS_CHECK="-O3" FLAGS_NO_CHECK="-O3"
+
+# compiles for an adjoint simulation
+cp $currentdir/DATA/Par_file DATA/Par_file
+sed -i "s:SAVE_FORWARD.*:SAVE_FORWARD = .true.:g" DATA/Par_file
+make clean
+make >& $currentdir/tmp_make_output.log
+make xcombine_vol_data >> $currentdir/tmp_make_output.log
+
+# backup of constants setup
+cp setup/* $currentdir/OUTPUT_FILES/
+cp OUTPUT_FILES/values_from_mesher.h $currentdir/OUTPUT_FILES/values_from_mesher.h.compilation
+cp DATA/Par_file $currentdir/OUTPUT_FILES/
+
+cd $currentdir
+
+# copy executables
+mkdir -p bin
+rm -rf bin/*
+cp ../../bin/xmeshfem3D ./bin/
+cp ../../bin/xspecfem3D ./bin/xspecfem3D.kernel
+cp ../../bin/xcombine_vol_data ./bin/
+
+# links data directories needed to run example in this current directory with s362ani
+cd DATA/
+ln -s ../../../DATA/crust2.0
+ln -s ../../../DATA/s362ani
+ln -s ../../../DATA/QRFSI12
+ln -s ../../../DATA/topo_bathy
+cd ../
+
+# copy useful script
+cp ../../UTILS/change_simulation_type.pl ./
+cp DATA/Par_file DATA/Par_file.org
+
+# run mesher & solver
+echo
+echo " running script..."
+echo
+./run_mesher_solver.kernel.bash
+
+echo `date`
+
Property changes on: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/process.kernel.sh
___________________________________________________________________
Name: svn:executable
+ *
Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/process.sh
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/process.sh (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/process.sh 2011-04-08 03:45:35 UTC (rev 18200)
@@ -0,0 +1,75 @@
+#!/bin/bash
+#
+# regional simulation example
+#
+# script runs mesher and solver using mpirun
+# on 4 CPUs
+#
+# synthetics have an approximate shortest period ~ 17 s
+#
+# modify accordingly for your own system specifics
+##################################################
+
+echo "running example: `date`"
+currentdir=`pwd`
+
+echo "directory: $currentdir"
+echo "(will take about 15 minutes)"
+echo
+
+# sets up directory structure in current example directoy
+echo
+echo " setting up example..."
+echo
+
+mkdir -p DATABASES_MPI
+mkdir -p OUTPUT_FILES
+
+rm -rf DATABASES_MPI/*
+rm -rf OUTPUT_FILES/*
+
+# compiles executables in root directory
+# using default configuration
+cd ../../
+# configures package with ifort compiler
+./configure F90=ifort MPIF90=/usr/local/openmpi-ifort/bin/mpif90 FLAGS_CHECK="-O3 -assume byterecl" FLAGS_NO_CHECK="-O3 -assume byterecl" > tmp.log
+# configures package with gfortran compiler
+#./configure F90=gfortran MPIF90=mpif90 FLAGS_CHECK="-O3" FLAGS_NO_CHECK="-O3"
+
+# compiles for a forward simulation
+cp $currentdir/DATA/Par_file DATA/Par_file
+make clean
+make >& $currentdir/tmp_make_output.log
+make xcombine_vol_data >> $currentdir/tmp_make_output.log
+
+# backup of constants setup
+cp setup/* $currentdir/OUTPUT_FILES/
+cp OUTPUT_FILES/values_from_mesher.h $currentdir/OUTPUT_FILES/values_from_mesher.h.compilation
+cp DATA/Par_file $currentdir/OUTPUT_FILES/
+
+cd $currentdir
+
+# copy executables
+mkdir -p bin
+rm -rf bin/*
+cp ../../bin/xmeshfem3D ./bin/
+cp ../../bin/xspecfem3D ./bin/
+cp ../../bin/xcombine_vol_data ./bin/
+
+# links data directories needed to run example in this current directory with s362ani
+cd DATA/
+ln -s ../../../DATA/crust2.0
+ln -s ../../../DATA/s362ani
+ln -s ../../../DATA/QRFSI12
+ln -s ../../../DATA/topo_bathy
+cd ../
+
+# run mesher & solver
+echo
+echo " running script..."
+echo
+./run_mesher_solver.bash
+
+
+echo `date`
+
Property changes on: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/process.sh
___________________________________________________________________
Name: svn:executable
+ *
Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/run_mesher_solver.bash
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/run_mesher_solver.bash (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/run_mesher_solver.bash 2011-04-08 03:45:35 UTC (rev 18200)
@@ -0,0 +1,75 @@
+#!/bin/bash
+
+###########################################################
+# USER PARAMETERS
+
+## 4 CPUs
+CPUs=4
+
+###########################################################
+
+
+BASEMPIDIR=`grep LOCAL_PATH DATA/Par_file | cut -d = -f 2 `
+
+# script to run the mesher and the solver
+# read DATA/Par_file to get information about the run
+# compute total number of nodes needed
+NPROC_XI=`grep NPROC_XI DATA/Par_file | cut -d = -f 2 `
+NPROC_ETA=`grep NPROC_ETA DATA/Par_file | cut -d = -f 2`
+NCHUNKS=`grep NCHUNKS DATA/Par_file | cut -d = -f 2 `
+
+# total number of nodes is the product of the values read
+numnodes=$(( $NCHUNKS * $NPROC_XI * $NPROC_ETA ))
+
+if [ ! "$numnodes" == "$CPUs" ]; then
+ echo "error: Par_file for $numnodes CPUs"
+ exit 1
+fi
+
+mkdir -p OUTPUT_FILES
+
+# backup files used for this simulation
+cp DATA/Par_file OUTPUT_FILES/
+cp DATA/STATIONS OUTPUT_FILES/
+cp DATA/CMTSOLUTION OUTPUT_FILES/
+
+
+##
+## mesh generation
+##
+sleep 2
+
+echo
+echo `date`
+echo "starting MPI mesher on $numnodes processors"
+echo
+
+mpirun -np $numnodes $PWD/bin/xmeshfem3D
+
+echo " mesher done: `date`"
+echo
+
+# backup important files addressing.txt and list*.txt
+cp OUTPUT_FILES/*.txt $BASEMPIDIR/
+
+
+##
+## forward simulation
+##
+
+# set up addressing
+#cp $BASEMPIDIR/addr*.txt OUTPUT_FILES/
+#cp $BASEMPIDIR/list*.txt OUTPUT_FILES/
+
+sleep 2
+
+echo
+echo `date`
+echo starting run in current directory $PWD
+echo
+
+mpirun -np $numnodes $PWD/bin/xspecfem3D
+
+echo "finished successfully"
+echo `date`
+
Property changes on: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/run_mesher_solver.bash
___________________________________________________________________
Name: svn:executable
+ *
Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/run_mesher_solver.kernel.bash
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/run_mesher_solver.kernel.bash (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/run_mesher_solver.kernel.bash 2011-04-08 03:45:35 UTC (rev 18200)
@@ -0,0 +1,105 @@
+#!/bin/bash
+###########################################################
+# USER PARAMETERS
+
+## 4 CPUs
+CPUs=4
+
+###########################################################
+
+
+BASEMPIDIR=`grep LOCAL_PATH DATA/Par_file | cut -d = -f 2 `
+
+# script to run the mesher and the solver
+# read DATA/Par_file to get information about the run
+# compute total number of nodes needed
+NPROC_XI=`grep NPROC_XI DATA/Par_file | cut -d = -f 2 `
+NPROC_ETA=`grep NPROC_ETA DATA/Par_file | cut -d = -f 2`
+NCHUNKS=`grep NCHUNKS DATA/Par_file | cut -d = -f 2 `
+
+# total number of nodes is the product of the values read
+numnodes=$(( $NCHUNKS * $NPROC_XI * $NPROC_ETA ))
+
+if [ ! "$numnodes" == "$CPUs" ]; then
+ echo "error: Par_file for $numnodes CPUs"
+ exit 1
+fi
+
+
+mkdir -p OUTPUT_FILES
+
+# backup files used for this simulation
+cp DATA/Par_file OUTPUT_FILES/
+cp DATA/STATIONS OUTPUT_FILES/
+cp DATA/CMTSOLUTION OUTPUT_FILES/
+cp DATA/STATIONS_ADJOINT OUTPUT_FILES/
+
+
+
+##
+## mesh generation
+##
+sleep 2
+echo
+echo `date`
+echo "starting MPI mesher on $numnodes processors"
+echo
+
+mpirun -np $numnodes $PWD/bin/xmeshfem3D
+
+echo " mesher done: `date`"
+echo
+
+# backup important files addressing.txt and list*.txt
+cp OUTPUT_FILES/*.txt $BASEMPIDIR/
+
+##
+## forward simulation
+## (saving last wavefields)
+##
+cp DATA/Par_file DATA/Par_file.org
+./change_simulation_type.pl -F
+sleep 2
+# set up addressing
+#cp $BASEMPIDIR/addr*.txt OUTPUT_FILES/
+#cp $BASEMPIDIR/list*.txt OUTPUT_FILES/
+
+echo
+echo `date`
+echo "starting forward run in current directory $PWD"
+echo
+
+mpirun -np $numnodes $PWD/bin/xspecfem3D.kernel
+
+echo " forward run done: `date`"
+echo
+
+# renames output files of forward run
+cd OUTPUT_FILES/
+mv output_solver.txt output_solver.for.txt
+rename .sem. .sem.for. *.sem.*
+cd ../
+
+
+##
+## adjoint simulation
+##
+./change_simulation_type.pl -b
+sleep 2
+
+echo
+echo `date`
+echo "starting adjoint run in current directory $PWD"
+echo
+
+mpirun -np $numnodes $PWD/bin/xspecfem3D.kernel
+
+echo " adjoint run done: `date`"
+echo
+
+# restore original Par_file
+mv DATA/Par_file.org DATA/Par_file
+
+echo "finished successfully"
+echo `date`
+
Property changes on: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/run_mesher_solver.kernel.bash
___________________________________________________________________
Name: svn:executable
+ *
Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/state_alpha_kernel.pvsm
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/state_alpha_kernel.pvsm (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/state_alpha_kernel.pvsm 2011-04-08 03:45:35 UTC (rev 18200)
@@ -0,0 +1,5215 @@
+<ParaView>
+ <ServerManagerState version="3.3.1">
+ <Proxy group="animation" type="AnimationScene" id="15" servers="16">
+ <Property name="AnimationTime" id="15.AnimationTime" number_of_elements="1">
+ <Element index="0" value="0"/>
+ </Property>
+ <Property name="CacheLimit" id="15.CacheLimit" number_of_elements="1">
+ <Element index="0" value="102400"/>
+ <Domain name="range" id="15.CacheLimit.range"/>
+ </Property>
+ <Property name="Caching" id="15.Caching" number_of_elements="1">
+ <Element index="0" value="0"/>
+ <Domain name="bool" id="15.Caching.bool"/>
+ </Property>
+ <Property name="ClockTimeRangeLocks" id="15.ClockTimeRangeLocks" number_of_elements="2">
+ <Element index="0" value="0"/>
+ <Element index="1" value="0"/>
+ </Property>
+ <Property name="Cues" id="15.Cues" number_of_elements="1">
+ <Proxy value="95"/>
+ <Domain name="groups" id="15.Cues.groups">
+ <Group value="animation"/>
+ </Domain>
+ </Property>
+ <Property name="EndTime" id="15.EndTime" number_of_elements="1">
+ <Element index="0" value="1"/>
+ </Property>
+ <Property name="StartTime" id="15.StartTime" number_of_elements="1">
+ <Element index="0" value="0"/>
+ </Property>
+ <Property name="ViewModules" id="15.ViewModules" number_of_elements="4">
+ <Proxy value="955"/>
+ <Proxy value="955"/>
+ <Proxy value="955"/>
+ <Proxy value="955"/>
+ <Domain name="groups" id="15.ViewModules.groups">
+ <Group value="views"/>
+ </Domain>
+ </Property>
+ <Property name="Duration" id="15.Duration" number_of_elements="1">
+ <Element index="0" value="10"/>
+ </Property>
+ <Property name="FramesPerTimestep" id="15.FramesPerTimestep" number_of_elements="1">
+ <Element index="0" value="1"/>
+ <Domain name="range" id="15.FramesPerTimestep.range">
+ <Min index="0" value="1"/>
+ </Domain>
+ </Property>
+ <Property name="Loop" id="15.Loop" number_of_elements="1">
+ <Element index="0" value="0"/>
+ <Domain name="bool" id="15.Loop.bool"/>
+ </Property>
+ <Property name="NumberOfFrames" id="15.NumberOfFrames" number_of_elements="1">
+ <Element index="0" value="10"/>
+ <Domain name="range" id="15.NumberOfFrames.range">
+ <Min index="0" value="1"/>
+ </Domain>
+ </Property>
+ <Property name="PlayMode" id="15.PlayMode" number_of_elements="1">
+ <Element index="0" value="2"/>
+ <Domain name="enum" id="15.PlayMode.enum">
+ <Entry value="0" text="Sequence"/>
+ <Entry value="1" text="Real Time"/>
+ <Entry value="2" text="Snap To TimeSteps"/>
+ </Domain>
+ </Property>
+ <Property name="TimeSteps" id="15.TimeSteps" number_of_elements="1">
+ <Element index="0" value="0"/>
+ </Property>
+ <SubProxy name="AnimationPlayer" servers="16">
+ <SubProxy name="RealtimeAnimationPlayer" servers="16"/>
+ <SubProxy name="SequenceAnimationPlayer" servers="16"/>
+ <SubProxy name="TimestepsAnimationPlayer" servers="16"/>
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+ <Proxy value="4"/>
+ <Domain name="groups" id="25.AnimatedProxy.groups">
+ <Group value="sources"/>
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Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/state_beta_kernel.pvsm
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/state_beta_kernel.pvsm (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/state_beta_kernel.pvsm 2011-04-08 03:45:35 UTC (rev 18200)
@@ -0,0 +1,5215 @@
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Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/state_rho_kernel.pvsm
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/state_rho_kernel.pvsm (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/state_rho_kernel.pvsm 2011-04-08 03:45:35 UTC (rev 18200)
@@ -0,0 +1,5215 @@
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Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/state_vs.pvsm
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/state_vs.pvsm (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/state_vs.pvsm 2011-04-08 03:45:35 UTC (rev 18200)
@@ -0,0 +1,5381 @@
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+ <Entry value="2" text="Times"/>
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+ <SubProxy name="Property" servers="20"/>
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+ <Domain name="range" id="951.EyeAngle.range">
+ <Min index="0" value="0"/>
+ </Domain>
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+ <Property name="FillLightAzimuth" id="951.FillLightAzimuth" number_of_elements="1">
+ <Element index="0" value="-10"/>
+ <Domain name="range" id="951.FillLightAzimuth.range">
+ <Min index="0" value="-90"/>
+ <Max index="0" value="90"/>
+ <Resolution index="0" value="1"/>
+ </Domain>
+ </Property>
+ <Property name="FillLightElevation" id="951.FillLightElevation" number_of_elements="1">
+ <Element index="0" value="-75"/>
+ <Domain name="range" id="951.FillLightElevation.range">
+ <Min index="0" value="-90"/>
+ <Max index="0" value="10"/>
+ <Resolution index="0" value="1"/>
+ </Domain>
+ </Property>
+ <Property name="FillLightK:F Ratio" id="951.FillLightK:F Ratio" number_of_elements="1">
+ <Element index="0" value="3"/>
+ <Domain name="range" id="951.FillLightK:F Ratio.range">
+ <Min index="0" value="1"/>
+ <Max index="0" value="15"/>
+ <Resolution index="0" value="0.1"/>
+ </Domain>
+ </Property>
+ <Property name="FillLightWarmth" id="951.FillLightWarmth" number_of_elements="1">
+ <Element index="0" value="0.4"/>
+ <Domain name="range" id="951.FillLightWarmth.range">
+ <Min index="0" value="0"/>
+ <Max index="0" value="1"/>
+ <Resolution index="0" value="0.01"/>
+ </Domain>
+ </Property>
+ <Property name="HeadLightK:H Ratio" id="951.HeadLightK:H Ratio" number_of_elements="1">
+ <Element index="0" value="3"/>
+ <Domain name="range" id="951.HeadLightK:H Ratio.range">
+ <Min index="0" value="1"/>
+ <Max index="0" value="15"/>
+ <Resolution index="0" value="0.1"/>
+ </Domain>
+ </Property>
+ <Property name="HeadLightWarmth" id="951.HeadLightWarmth" number_of_elements="1">
+ <Element index="0" value="0.5"/>
+ <Domain name="range" id="951.HeadLightWarmth.range">
+ <Min index="0" value="0"/>
+ <Max index="0" value="1"/>
+ <Resolution index="0" value="0.01"/>
+ </Domain>
+ </Property>
+ <Property name="KeyLightAzimuth" id="951.KeyLightAzimuth" number_of_elements="1">
+ <Element index="0" value="10"/>
+ <Domain name="range" id="951.KeyLightAzimuth.range">
+ <Min index="0" value="-90"/>
+ <Max index="0" value="90"/>
+ <Resolution index="0" value="1"/>
+ </Domain>
+ </Property>
+ <Property name="KeyLightElevation" id="951.KeyLightElevation" number_of_elements="1">
+ <Element index="0" value="50"/>
+ <Domain name="range" id="951.KeyLightElevation.range">
+ <Min index="0" value="0"/>
+ <Max index="0" value="90"/>
+ <Resolution index="0" value="1"/>
+ </Domain>
+ </Property>
+ <Property name="KeyLightIntensity" id="951.KeyLightIntensity" number_of_elements="1">
+ <Element index="0" value="0.75"/>
+ <Domain name="range" id="951.KeyLightIntensity.range">
+ <Min index="0" value="0"/>
+ <Max index="0" value="2"/>
+ <Resolution index="0" value="0.05"/>
+ </Domain>
+ </Property>
+ <Property name="KeyLightWarmth" id="951.KeyLightWarmth" number_of_elements="1">
+ <Element index="0" value="0.6"/>
+ <Domain name="range" id="951.KeyLightWarmth.range">
+ <Min index="0" value="0"/>
+ <Max index="0" value="1"/>
+ <Resolution index="0" value="0.01"/>
+ </Domain>
+ </Property>
+ <Property name="LightAmbientColor" id="951.LightAmbientColor" number_of_elements="3">
+ <Element index="0" value="1"/>
+ <Element index="1" value="1"/>
+ <Element index="2" value="1"/>
+ <Domain name="range" id="951.LightAmbientColor.range">
+ <Min index="0" value="0"/>
+ <Min index="1" value="0"/>
+ <Min index="2" value="0"/>
+ <Max index="0" value="1"/>
+ <Max index="1" value="1"/>
+ <Max index="2" value="1"/>
+ </Domain>
+ </Property>
+ <Property name="LightDiffuseColor" id="951.LightDiffuseColor" number_of_elements="3">
+ <Element index="0" value="1"/>
+ <Element index="1" value="1"/>
+ <Element index="2" value="1"/>
+ <Domain name="range" id="951.LightDiffuseColor.range">
+ <Min index="0" value="0"/>
+ <Min index="1" value="0"/>
+ <Min index="2" value="0"/>
+ <Max index="0" value="1"/>
+ <Max index="1" value="1"/>
+ <Max index="2" value="1"/>
+ </Domain>
+ </Property>
+ <Property name="LightIntensity" id="951.LightIntensity" number_of_elements="1">
+ <Element index="0" value="0.44"/>
+ <Domain name="range" id="951.LightIntensity.range">
+ <Min index="0" value="0"/>
+ <Max index="0" value="1"/>
+ </Domain>
+ </Property>
+ <Property name="LightSpecularColor" id="951.LightSpecularColor" number_of_elements="3">
+ <Element index="0" value="1"/>
+ <Element index="1" value="1"/>
+ <Element index="2" value="1"/>
+ <Domain name="range" id="951.LightSpecularColor.range">
+ <Min index="0" value="0"/>
+ <Min index="1" value="0"/>
+ <Min index="2" value="0"/>
+ <Max index="0" value="1"/>
+ <Max index="1" value="1"/>
+ <Max index="2" value="1"/>
+ </Domain>
+ </Property>
+ <Property name="LightSwitch" id="951.LightSwitch" number_of_elements="1">
+ <Element index="0" value="1"/>
+ <Domain name="bool" id="951.LightSwitch.bool"/>
+ </Property>
+ <Property name="MaintainLuminance" id="951.MaintainLuminance" number_of_elements="1">
+ <Element index="0" value="0"/>
+ <Domain name="bool" id="951.MaintainLuminance.bool"/>
+ </Property>
+ <Property name="RenderWindowSizeInfo" id="951.RenderWindowSizeInfo" number_of_elements="2">
+ <Element index="0" value="934"/>
+ <Element index="1" value="568"/>
+ </Property>
+ <Property name="ViewSize" id="951.ViewSize" number_of_elements="2">
+ <Element index="0" value="934"/>
+ <Element index="1" value="568"/>
+ <Domain name="range" id="951.ViewSize.range">
+ <Min index="0" value="0"/>
+ <Min index="1" value="0"/>
+ </Domain>
+ </Property>
+ <SubProxy name="ActiveCamera" servers="16"/>
+ <SubProxy name="Interactor" servers="16"/>
+ <SubProxy name="InteractorStyle" servers="16"/>
+ <SubProxy name="Light" servers="20"/>
+ <SubProxy name="LightKit" servers="20"/>
+ <SubProxy name="RenderWindow" servers="20"/>
+ <SubProxy name="Renderer" servers="20"/>
+ <SubProxy name="Renderer2D" servers="20"/>
+ </Proxy>
+ <ProxyCollection name="animation">
+ <Item id="15" name="AnimationScene1"/>
+ <Item id="25" name="TimeAnimationCue1"/>
+ <Item id="91" name="TimeAnimationCue1"/>
+ <Item id="1611" name="TimeAnimationCue1"/>
+ <Item id="1615" name="TimeAnimationCue1"/>
+ </ProxyCollection>
+ <ProxyCollection name="lookup_tables">
+ <Item id="791" name="1. Zcoord"/>
+ <Item id="98" name="1.Scalars_"/>
+ </ProxyCollection>
+ <ProxyCollection name="pq_helper_proxies.102">
+ <Item id="100" name="ScalarOpacityFunction"/>
+ </ProxyCollection>
+ <ProxyCollection name="pq_helper_proxies.1687">
+ <Item id="1701" name="RepresentationAnimationHelper"/>
+ </ProxyCollection>
+ <ProxyCollection name="pq_helper_proxies.1706">
+ <Item id="1958" name="ScalarOpacityFunction"/>
+ </ProxyCollection>
+ <ProxyCollection name="pq_helper_proxies.1966">
+ <Item id="1988" name="RepresentationAnimationHelper"/>
+ <Item id="1969" name="Source"/>
+ <Item id="1970" name="Source"/>
+ <Item id="1971" name="Source"/>
+ <Item id="1972" name="Source"/>
+ <Item id="1973" name="Source"/>
+ <Item id="1974" name="Source"/>
+ <Item id="1975" name="Source"/>
+ </ProxyCollection>
+ <ProxyCollection name="pq_helper_proxies.2256">
+ <Item id="2270" name="RepresentationAnimationHelper"/>
+ </ProxyCollection>
+ <ProxyCollection name="pq_helper_proxies.2275">
+ <Item id="2527" name="ScalarOpacityFunction"/>
+ </ProxyCollection>
+ <ProxyCollection name="pq_helper_proxies.2535">
+ <Item id="2557" name="RepresentationAnimationHelper"/>
+ <Item id="2538" name="Source"/>
+ <Item id="2539" name="Source"/>
+ <Item id="2540" name="Source"/>
+ <Item id="2541" name="Source"/>
+ <Item id="2542" name="Source"/>
+ <Item id="2543" name="Source"/>
+ <Item id="2544" name="Source"/>
+ </ProxyCollection>
+ <ProxyCollection name="pq_helper_proxies.785">
+ <Item id="1623" name="RepresentationAnimationHelper"/>
+ </ProxyCollection>
+ <ProxyCollection name="pq_helper_proxies.795">
+ <Item id="793" name="ScalarOpacityFunction"/>
+ </ProxyCollection>
+ <ProxyCollection name="pq_helper_proxies.95">
+ <Item id="1624" name="RepresentationAnimationHelper"/>
+ </ProxyCollection>
+ <ProxyCollection name="pq_helper_proxies.951">
+ <Item id="933" name="Manipulators"/>
+ <Item id="935" name="Manipulators"/>
+ <Item id="937" name="Manipulators"/>
+ <Item id="939" name="Manipulators"/>
+ <Item id="941" name="Manipulators"/>
+ <Item id="943" name="Manipulators"/>
+ <Item id="945" name="Manipulators"/>
+ <Item id="947" name="Manipulators"/>
+ <Item id="949" name="Manipulators"/>
+ </ProxyCollection>
+ <ProxyCollection name="representations">
+ <Item id="102" name="DataRepresentation1"/>
+ <Item id="1706" name="DataRepresentation1"/>
+ <Item id="1999" name="DataRepresentation2"/>
+ <Item id="2275" name="DataRepresentation3"/>
+ <Item id="2566" name="DataRepresentation4"/>
+ <Item id="795" name="DataRepresentation6"/>
+ </ProxyCollection>
+ <ProxyCollection name="scalar_bars">
+ <Item id="240" name="ScalarBarWidgetRepresentation1"/>
+ </ProxyCollection>
+ <ProxyCollection name="sources">
+ <Item id="785" name="AVS_continent_boundaries.inp"/>
+ <Item id="1966" name="Glyph1"/>
+ <Item id="2535" name="Glyph2"/>
+ <Item id="2256" name="receiver.vtk"/>
+ <Item id="95" name="reg_1_vs.vtu"/>
+ <Item id="1687" name="source.vtk"/>
+ </ProxyCollection>
+ <ProxyCollection name="timekeeper">
+ <Item id="4" name="TimeKeeper"/>
+ </ProxyCollection>
+ <ProxyCollection name="views">
+ <Item id="951" name="RenderView1"/>
+ </ProxyCollection>
+ <CustomProxyDefinitions/>
+ <Links/>
+ </ServerManagerState>
+ <ViewManager version="3.3.1">
+ <MultiView>
+ <Splitter index="0" orientation="Horizontal" count="1" sizes="938"/>
+ </MultiView>
+ <Frame index="0" view_module="951"/>
+ </ViewManager>
+</ParaView>
Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/xcombine_vol_data.sh
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/xcombine_vol_data.sh (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/xcombine_vol_data.sh 2011-04-08 03:45:35 UTC (rev 18200)
@@ -0,0 +1,64 @@
+#!/bin/bash
+#
+#
+# note: script requires executable 'mesh2vtu'
+##############################################
+# partitions
+numCPUs=4
+# slice file
+echo "1" | awk '{for(i=0;i<numCPUs;i++)print i}' numCPUs=$numCPUs > slices_all.txt
+slice="slices_all.txt"
+# kernel directory
+dir="DATABASES_MPI/"
+# low (0) / high (1) resolution
+res="1"
+
+# for visualization
+cp ../../UTILS/Visualization/Paraview/AVS_continent_boundaries.inp ./
+
+echo
+echo "alpha_kernel"
+echo
+./bin/xcombine_vol_data $slice alpha_kernel $dir $dir OUTPUT_FILES/ $res > tmp.log
+mesh2vtu.pl -i OUTPUT_FILES/reg_1_alpha_kernel.mesh -o OUTPUT_FILES/reg_1_alpha_kernel.vtu >> tmp.log
+mesh2vtu.pl -i OUTPUT_FILES/reg_2_alpha_kernel.mesh -o OUTPUT_FILES/reg_2_alpha_kernel.vtu >> tmp.log
+mesh2vtu.pl -i OUTPUT_FILES/reg_3_alpha_kernel.mesh -o OUTPUT_FILES/reg_3_alpha_kernel.vtu >> tmp.log
+rm -f OUTPUT_FILES/reg_*alpha*.mesh
+min=`grep "min/max" tmp.log | awk '{print $3 }' | sort | head -n 1`
+max=`grep "min/max" tmp.log | awk '{print $4 }' | sort | tail -n 1`
+echo " alpha_kernel min/max: $min $max"
+./paraviewpython-example.py state_alpha_kernel.pvsm
+mv image.jpg image_alpha_kernel.jpg
+
+echo
+echo "beta_kernel"
+echo
+# only for crust_mantle region
+./bin/xcombine_vol_data $slice beta_kernel $dir $dir OUTPUT_FILES/ $res 1 > tmp.log
+mesh2vtu.pl -i OUTPUT_FILES/reg_1_beta_kernel.mesh -o OUTPUT_FILES/reg_1_beta_kernel.vtu >> tmp.log
+rm -f OUTPUT_FILES/reg_*beta*.mesh
+min=`grep "min/max" tmp.log | awk '{print $3 }' | sort | head -n 1`
+max=`grep "min/max" tmp.log | awk '{print $4 }' | sort | tail -n 1`
+echo " beta_kernel min/max: $min $max"
+./paraviewpython-example.py state_beta_kernel.pvsm
+mv image.jpg image_beta_kernel.jpg
+
+echo
+echo "rho_kernel"
+echo
+./bin/xcombine_vol_data $slice rho_kernel $dir $dir OUTPUT_FILES/ $res > tmp.log
+mesh2vtu.pl -i OUTPUT_FILES/reg_1_rho_kernel.mesh -o OUTPUT_FILES/reg_1_rho_kernel.vtu >> tmp.log
+mesh2vtu.pl -i OUTPUT_FILES/reg_2_rho_kernel.mesh -o OUTPUT_FILES/reg_2_rho_kernel.vtu >> tmp.log
+mesh2vtu.pl -i OUTPUT_FILES/reg_3_rho_kernel.mesh -o OUTPUT_FILES/reg_3_rho_kernel.vtu >> tmp.log
+rm -f OUTPUT_FILES/reg_*rho*.mesh
+min=`grep "min/max" tmp.log | awk '{print $3 }' | sort | head -n 1`
+max=`grep "min/max" tmp.log | awk '{print $4 }' | sort | tail -n 1`
+echo " rho_kernel min/max: $min $max"
+./paraviewpython-example.py state_rho_kernel.pvsm
+mv image.jpg image_rho_kernel.jpg
+
+echo
+echo "visualize kernel vtu files in directory: OUTPUT_FILES/ using e.g. Paraview"
+echo "done"
+
+
Property changes on: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/xcombine_vol_data.sh
___________________________________________________________________
Name: svn:executable
+ *
Added: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/xcombine_vol_data.vs.sh
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/xcombine_vol_data.vs.sh (rev 0)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/xcombine_vol_data.vs.sh 2011-04-08 03:45:35 UTC (rev 18200)
@@ -0,0 +1,39 @@
+#!/bin/bash
+#
+#
+# note: script requires executable 'mesh2vtu'
+##############################################
+# partitions
+numCPUs=4
+# slice file
+echo "1" | awk '{for(i=0;i<numCPUs;i++)print i}' numCPUs=$numCPUs > slices_all.txt
+slice="slices_all.txt"
+# kernel directory
+dir="DATABASES_MPI/"
+# low (0) / high (1) resolution
+res="0"
+
+# for visualization
+cp ../../UTILS/Visualization/Paraview/AVS_continent_boundaries.inp ./
+
+# velocity model for: vs
+par="vs"
+echo
+echo "velocity model: $par"
+echo
+./bin/xcombine_vol_data $slice $par $dir $dir OUTPUT_FILES/ $res > tmp.log
+mesh2vtu.pl -i OUTPUT_FILES/reg_1_$par.mesh -o OUTPUT_FILES/reg_1_$par.vtu >> tmp.log
+mesh2vtu.pl -i OUTPUT_FILES/reg_2_$par.mesh -o OUTPUT_FILES/reg_2_$par.vtu >> tmp.log
+mesh2vtu.pl -i OUTPUT_FILES/reg_3_$par.mesh -o OUTPUT_FILES/reg_3_$par.vtu >> tmp.log
+rm -f OUTPUT_FILES/reg_*$par*.mesh
+min=`grep "min/max" tmp.log | awk '{print $3 }' | sort | head -n 1`
+max=`grep "min/max" tmp.log | awk '{print $4 }' | sort | tail -n 1`
+echo " $par min/max: $min $max"
+./paraviewpython-example.py state_vs.pvsm
+mv image.jpg image_vs.jpg
+
+echo
+echo "visualize mesh vtu files in directory: OUTPUT_FILES/ using e.g. Paraview"
+echo "done"
+
+
Property changes on: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/xcombine_vol_data.vs.sh
___________________________________________________________________
Name: svn:executable
+ *
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