[cig-commits] r18703 - in short/3D/PyLith/branches/v1.6-stable: doc/userguide/tutorials/3dhex8 doc/userguide/tutorials/3dhex8/surfload doc/userguide/tutorials/3dhex8/surfload/figs tests/refinefaulttip
brad at geodynamics.org
brad at geodynamics.org
Wed Jul 6 16:30:27 PDT 2011
Author: brad
Date: 2011-07-06 16:30:27 -0700 (Wed, 06 Jul 2011)
New Revision: 18703
Added:
short/3D/PyLith/branches/v1.6-stable/doc/userguide/tutorials/3dhex8/surfload/
short/3D/PyLith/branches/v1.6-stable/doc/userguide/tutorials/3dhex8/surfload/figs/
short/3D/PyLith/branches/v1.6-stable/doc/userguide/tutorials/3dhex8/surfload/figs/step18-displ.jpg
short/3D/PyLith/branches/v1.6-stable/doc/userguide/tutorials/3dhex8/surfload/figs/step19-stress_t200.jpg
short/3D/PyLith/branches/v1.6-stable/doc/userguide/tutorials/3dhex8/surfload/surfload.lyx
Removed:
short/3D/PyLith/branches/v1.6-stable/tests/refinefaulttip/Makefile.in
Modified:
short/3D/PyLith/branches/v1.6-stable/doc/userguide/tutorials/3dhex8/3dhex8.lyx
Log:
Added examples.3d/hex8 step18 and step19 to manual.
Modified: short/3D/PyLith/branches/v1.6-stable/doc/userguide/tutorials/3dhex8/3dhex8.lyx
===================================================================
--- short/3D/PyLith/branches/v1.6-stable/doc/userguide/tutorials/3dhex8/3dhex8.lyx 2011-07-06 21:03:09 UTC (rev 18702)
+++ short/3D/PyLith/branches/v1.6-stable/doc/userguide/tutorials/3dhex8/3dhex8.lyx 2011-07-06 23:30:27 UTC (rev 18703)
@@ -614,6 +614,13 @@
\end_inset
+\begin_inset CommandInset include
+LatexCommand input
+filename "surfload/surfload.lyx"
+
+\end_inset
+
+
\end_layout
\end_body
Added: short/3D/PyLith/branches/v1.6-stable/doc/userguide/tutorials/3dhex8/surfload/figs/step18-displ.jpg
===================================================================
(Binary files differ)
Property changes on: short/3D/PyLith/branches/v1.6-stable/doc/userguide/tutorials/3dhex8/surfload/figs/step18-displ.jpg
___________________________________________________________________
Name: svn:mime-type
+ application/octet-stream
Added: short/3D/PyLith/branches/v1.6-stable/doc/userguide/tutorials/3dhex8/surfload/figs/step19-stress_t200.jpg
===================================================================
(Binary files differ)
Property changes on: short/3D/PyLith/branches/v1.6-stable/doc/userguide/tutorials/3dhex8/surfload/figs/step19-stress_t200.jpg
___________________________________________________________________
Name: svn:mime-type
+ application/octet-stream
Added: short/3D/PyLith/branches/v1.6-stable/doc/userguide/tutorials/3dhex8/surfload/surfload.lyx
===================================================================
--- short/3D/PyLith/branches/v1.6-stable/doc/userguide/tutorials/3dhex8/surfload/surfload.lyx (rev 0)
+++ short/3D/PyLith/branches/v1.6-stable/doc/userguide/tutorials/3dhex8/surfload/surfload.lyx 2011-07-06 23:30:27 UTC (rev 18703)
@@ -0,0 +1,530 @@
+#LyX 2.0 created this file. For more info see http://www.lyx.org/
+\lyxformat 413
+\begin_document
+\begin_header
+\textclass book
+\begin_preamble
+
+\end_preamble
+\use_default_options false
+\maintain_unincluded_children false
+\language english
+\language_package default
+\inputencoding latin1
+\fontencoding global
+\font_roman default
+\font_sans default
+\font_typewriter default
+\font_default_family default
+\use_non_tex_fonts false
+\font_sc false
+\font_osf false
+\font_sf_scale 100
+\font_tt_scale 100
+
+\graphics default
+\default_output_format default
+\output_sync 0
+\bibtex_command default
+\index_command default
+\paperfontsize default
+\spacing single
+\use_hyperref false
+\papersize default
+\use_geometry true
+\use_amsmath 0
+\use_esint 0
+\use_mhchem 1
+\use_mathdots 1
+\cite_engine basic
+\use_bibtopic false
+\use_indices false
+\paperorientation portrait
+\suppress_date false
+\use_refstyle 0
+\index Index
+\shortcut idx
+\color #008000
+\end_index
+\leftmargin 1in
+\topmargin 1in
+\rightmargin 1in
+\bottommargin 2in
+\secnumdepth 3
+\tocdepth 3
+\paragraph_separation indent
+\paragraph_indentation default
+\quotes_language english
+\papercolumns 1
+\papersides 1
+\paperpagestyle default
+\tracking_changes false
+\output_changes false
+\html_math_output 0
+\html_css_as_file 0
+\html_be_strict false
+\end_header
+
+\begin_body
+
+\begin_layout Subsection
+\begin_inset CommandInset label
+LatexCommand label
+name "sec:Tutorial-3d-hex8-surfload"
+
+\end_inset
+
+Surface Load Traction Examples
+\end_layout
+
+\begin_layout Standard
+PyLith features discussed in this tutorial:
+\end_layout
+
+\begin_layout Itemize
+Time-dependent Neumann (traction) boundary conditions
+\end_layout
+
+\begin_layout Itemize
+Dirichlet boundary conditions
+\end_layout
+
+\begin_layout Itemize
+Elastic material
+\end_layout
+
+\begin_layout Subsubsection
+Overview
+\end_layout
+
+\begin_layout Standard
+This set of examples describes a set of problems for PyLith involving surface
+ loading with a Neumann (traction) applied to the ground surface.
+ The first example demonstrates the use of a surface load in a static problem,
+ and the second example demonstates how to apply a cyclic load in a quasi-static
+ problem.
+ All of the examples are contained in the directory
+\family typewriter
+examples/3d/hex8
+\family default
+, and the corresponding
+\family typewriter
+.cfg
+\family default
+ files are
+\family typewriter
+step18.cfg
+\family default
+ and
+\family typewriter
+step19.cfg
+\family default
+.
+ Each example may be run as follows:
+\end_layout
+
+\begin_layout LyX-Code
+pylith stepXX.cfg
+\end_layout
+
+\begin_layout Standard
+This will cause PyLith to read the default parameters in
+\family typewriter
+pylithapp.cfg
+\family default
+, and then override or augment them with the additional parameters in the
+
+\family typewriter
+stepXX.cfg
+\family default
+ file.
+ Each
+\family typewriter
+.cfg
+\family default
+ file is extensively documented, to provide detailed information on the
+ various parameters.
+\end_layout
+
+\begin_layout Subsubsection
+Step18 - Static surface load
+\end_layout
+
+\begin_layout Standard
+The
+\family typewriter
+step18.cfg
+\family default
+ file defines a problem with a spatially varying axial surface load applied
+ to the top surface with Dirichlet (roller) boundary conditions on the lateral
+ and bottom surfaces.
+ We first set the array of boundary conditions with one for each surface
+ of the domain.
+ As in the other examples, we also setup output for the ground surface.
+\end_layout
+
+\begin_layout Standard
+For the Dirichlet boundary conditions we fix the degree of freedom associated
+ with motion normal to the boundary while leaving the other degrees of freedom
+ free.
+ We do not explicitly specify the use of a Dirichlet boundary condition
+ because it is the default.
+ Similarly, the ZeroDispDB is the default spatial database for the displacements
+ in a Dirichlet boundary condition, so all we need to specify is the degree
+ of freedom that is constrained, the name of the nodeset from CUBIT, and
+ a label used in diagnostic output.
+ For the Dirichlet boundary condition on the +x surface we have:
+\end_layout
+
+\begin_layout LyX-Code
+[pylithapp.timedependent.bc.x_pos]
+\end_layout
+
+\begin_layout LyX-Code
+label = face_xpos
+\end_layout
+
+\begin_layout LyX-Code
+bc_dof = [0]
+\end_layout
+
+\begin_layout LyX-Code
+db_initial.label = Dirichlet BC on +x
+\end_layout
+
+\begin_layout Standard
+On the top surface we apply a Neumann boundary condition for the surface
+ load, so we first set the boundary condition type and then specify the
+ nodeset in CUBIT associated with this surface.
+ For the static surface load, we use a spatial database for the initial
+ value and linear interpolation.
+ We integrate the surface tractions over the boundary, so we also specify
+ the numerical integration scheme to use.
+ Finally, we specify a vector for the up direction because the tractions
+ are applied to a horizontal surface, resulting in ambiguous shear directions
+ for our default orientation convention.
+\end_layout
+
+\begin_layout LyX-Code
+[pylithapp.timedependent.bc]
+\end_layout
+
+\begin_layout LyX-Code
+z_pos = pylith.bc.Neumann
+\begin_inset Newline newline
+\end_inset
+
+
+\end_layout
+
+\begin_layout LyX-Code
+[pylithapp.timedependent.bc.z_pos]
+\end_layout
+
+\begin_layout LyX-Code
+label = face_zpos
+\end_layout
+
+\begin_layout LyX-Code
+\begin_inset Newline newline
+\end_inset
+
+db_initial = spatialdata.spatialdb.SimpleDB
+\end_layout
+
+\begin_layout LyX-Code
+db_initial.label = Neumann BC on +z
+\end_layout
+
+\begin_layout LyX-Code
+db_initial.iohandler.filename = spatialdb/tractions_axial_pressure.spatialdb
+\end_layout
+
+\begin_layout LyX-Code
+# Use linear interpolation
+\end_layout
+
+\begin_layout LyX-Code
+db_initial.query_type = linear
+\begin_inset Newline newline
+\end_inset
+
+
+\end_layout
+
+\begin_layout LyX-Code
+# Diagnostic output
+\end_layout
+
+\begin_layout LyX-Code
+output.cell_info_fields = [initial-value]
+\end_layout
+
+\begin_layout LyX-Code
+output.writer.filename = output/step18-traction.vtk
+\end_layout
+
+\begin_layout LyX-Code
+output.cell_filter = pylith.meshio.CellFilterAvgSubMesh
+\begin_inset Newline newline
+\end_inset
+
+
+\end_layout
+
+\begin_layout LyX-Code
+# We must specify quadrature information for the cell faces.
+\end_layout
+
+\begin_layout LyX-Code
+quadrature.cell = pylith.feassemble.FIATLagrange
+\end_layout
+
+\begin_layout LyX-Code
+quadrature.cell.dimension = 2
+\end_layout
+
+\begin_layout LyX-Code
+quadrature.cell.quad_order = 2
+\begin_inset Newline newline
+\end_inset
+
+
+\end_layout
+
+\begin_layout LyX-Code
+# Because normal for +z surface is [0,0,1], the horizontal and
+\end_layout
+
+\begin_layout LyX-Code
+# vertical shear directions are ambiguous.
+ We provide a "fake" up
+\end_layout
+
+\begin_layout LyX-Code
+# direction of [0,1,0] so that the horizontal shear direction ("up" x
+\end_layout
+
+\begin_layout LyX-Code
+# normal) is [1,0,0] and the vertical shear direction (normal x horiz
+\end_layout
+
+\begin_layout LyX-Code
+# shear dir) is [0,1,0].
+\end_layout
+
+\begin_layout LyX-Code
+up_dir = [0,1,0]
+\end_layout
+
+\begin_layout Standard
+When we have run the simulation, the output VTK files will be contained
+ in
+\family typewriter
+examples/3d/hex8/output
+\family default
+ (all with a prefix of
+\family typewriter
+step1
+\family default
+8).
+ Results using ParaView are shown in Figure
+\begin_inset CommandInset ref
+LatexCommand ref
+reference "fig:step18-displ"
+
+\end_inset
+
+.
+\end_layout
+
+\begin_layout Standard
+\begin_inset Float figure
+wide false
+sideways false
+status open
+
+\begin_layout Plain Layout
+\align center
+\begin_inset Graphics
+ filename figs/step18-displ.jpg
+ lyxscale 50
+ width 10cm
+
+\end_inset
+
+
+\end_layout
+
+\begin_layout Plain Layout
+\begin_inset Caption
+
+\begin_layout Plain Layout
+Displacement field for example step18 visualized using ParaView.
+ The vectors show the displacement field while the colors in the wireframe
+ correspond to the z-component of the displacement field.
+\begin_inset CommandInset label
+LatexCommand label
+name "fig:step18-displ"
+
+\end_inset
+
+
+\end_layout
+
+\end_inset
+
+
+\end_layout
+
+\end_inset
+
+
+\end_layout
+
+\begin_layout Subsubsection
+Step19 - Time-dependent surface load
+\end_layout
+
+\begin_layout Standard
+The
+\family typewriter
+step19.cfg
+\family default
+ file defines a problem that is identical to example step18, except that
+ we vary the amplitude of the surface load as a function of time.
+ We use a temporal database (analogous to our spatial databases for specifying
+ spatial variations) to prescribe a piecewise linear variation of the amplitude
+ with time as given in the file
+\family typewriter
+spatialdb/loadcycle.timedb
+\family default
+.
+ The amplitude begins at zero, progresses to 1.0, then 1.5, before decreasing
+ in a symmetric fashion.
+ The temporal database can use variable time steps to prescribe arbitrary
+ time histories.
+
+\end_layout
+
+\begin_layout Standard
+Rather than specify a spatial database for the initial value of the Neumann
+ boundary condition corresponding to the surface load, we specify a spatial
+ database for the change in value and the temporal database:
+\end_layout
+
+\begin_layout LyX-Code
+[pylithapp.timedependent.bc.z_pos]
+\end_layout
+
+\begin_layout LyX-Code
+label = face_zpos
+\end_layout
+
+\begin_layout LyX-Code
+db_change = spatialdata.spatialdb.SimpleDB
+\end_layout
+
+\begin_layout LyX-Code
+db_change.label = Amplitude of Neumann BC on +z
+\end_layout
+
+\begin_layout LyX-Code
+db_change.iohandler.filename = spatialdb/tractions_axial_pressure.spatialdb
+\end_layout
+
+\begin_layout LyX-Code
+# Use linear interpolation
+\end_layout
+
+\begin_layout LyX-Code
+db_change.query_type = linear
+\begin_inset Newline newline
+\end_inset
+
+
+\end_layout
+
+\begin_layout LyX-Code
+th_change = spatialdata.spatialdb.TimeHistory
+\end_layout
+
+\begin_layout LyX-Code
+th_change.label = Time history for Neumann BC on +z
+\end_layout
+
+\begin_layout LyX-Code
+th_change.filename = spatialdb/loadcycle.timedb
+\end_layout
+
+\begin_layout Standard
+When we have run the simulation, the output VTK files will be contained
+ in
+\family typewriter
+examples/3d/hex8/output
+\family default
+ (all with a prefix of
+\family typewriter
+step1
+\family default
+9).
+ Results using ParaView are shown in Figure
+\begin_inset CommandInset ref
+LatexCommand ref
+reference "fig:step19-stress-t200"
+
+\end_inset
+
+.
+\end_layout
+
+\begin_layout Standard
+\begin_inset Float figure
+wide false
+sideways false
+status open
+
+\begin_layout Plain Layout
+\align center
+\begin_inset Graphics
+ filename figs/step19-stress_t200.jpg
+ lyxscale 50
+ width 10cm
+
+\end_inset
+
+
+\end_layout
+
+\begin_layout Plain Layout
+\begin_inset Caption
+
+\begin_layout Plain Layout
+Stress field (zz-component) for example step19 at t = 200 years visualized
+ using ParaView.
+ The stresses appear as 4 layers since we have used
+\family typewriter
+CellFilterAvgMesh
+\family default
+ for material output.
+\begin_inset CommandInset label
+LatexCommand label
+name "fig:step19-stress-t200"
+
+\end_inset
+
+
+\end_layout
+
+\end_inset
+
+
+\end_layout
+
+\end_inset
+
+
+\end_layout
+
+\end_body
+\end_document
Deleted: short/3D/PyLith/branches/v1.6-stable/tests/refinefaulttip/Makefile.in
===================================================================
--- short/3D/PyLith/branches/v1.6-stable/tests/refinefaulttip/Makefile.in 2011-07-06 21:03:09 UTC (rev 18702)
+++ short/3D/PyLith/branches/v1.6-stable/tests/refinefaulttip/Makefile.in 2011-07-06 23:30:27 UTC (rev 18703)
@@ -1,447 +0,0 @@
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-# @configure_input@
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
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-#
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-# Brad T. Aagaard, U.S. Geological Survey
-# Charles A. Williams, GNS Science
-# Matthew G. Knepley, University of Chicago
-#
-# This code was developed as part of the Computational Infrastructure
-# for Geodynamics (http://geodynamics.org).
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