[cig-commits] r18611 - in short/3D/PyLith/trunk: . tests tests/2d tests/refinefaulttip
brad at geodynamics.org
brad at geodynamics.org
Mon Jun 13 17:54:58 PDT 2011
Author: brad
Date: 2011-06-13 17:54:57 -0700 (Mon, 13 Jun 2011)
New Revision: 18611
Added:
short/3D/PyLith/trunk/tests/refinefaulttip/
short/3D/PyLith/trunk/tests/refinefaulttip/Makefile.am
short/3D/PyLith/trunk/tests/refinefaulttip/Makefile.in
short/3D/PyLith/trunk/tests/refinefaulttip/hex8.cfg
short/3D/PyLith/trunk/tests/refinefaulttip/hex8.mesh
short/3D/PyLith/trunk/tests/refinefaulttip/quad4.cfg
short/3D/PyLith/trunk/tests/refinefaulttip/quad4.mesh
short/3D/PyLith/trunk/tests/refinefaulttip/tri3.cfg
short/3D/PyLith/trunk/tests/refinefaulttip/tri3.mesh
Removed:
short/3D/PyLith/trunk/tests/2d/refinefaulttip/
Modified:
short/3D/PyLith/trunk/configure.ac
short/3D/PyLith/trunk/tests/2d/Makefile.am
short/3D/PyLith/trunk/tests/Makefile.am
Log:
Moved tests/2d/refinefaulttip to tests/refinefaulttip (added test for tri3 and hex8).
Modified: short/3D/PyLith/trunk/configure.ac
===================================================================
--- short/3D/PyLith/trunk/configure.ac 2011-06-13 22:18:30 UTC (rev 18610)
+++ short/3D/PyLith/trunk/configure.ac 2011-06-14 00:54:57 UTC (rev 18611)
@@ -321,7 +321,6 @@
tests/2d/maxwell/Makefile
tests/2d/slipdir/Makefile
tests/2d/frictionslide/Makefile
- tests/2d/refinefaulttip/Makefile
tests/3d/Makefile
tests/3d/matprops/Makefile
tests/3d/slipdir/Makefile
@@ -337,6 +336,7 @@
tests/3d/plasticity/threehex8/results/Makefile
tests/3d/plasticity/threehex8/spatialdb/Makefile
tests/topology/Makefile
+ tests/refinefaulttip/Makefile
doc/Makefile
doc/developer/Makefile
doc/install/Makefile
Modified: short/3D/PyLith/trunk/tests/2d/Makefile.am
===================================================================
--- short/3D/PyLith/trunk/tests/2d/Makefile.am 2011-06-13 22:18:30 UTC (rev 18610)
+++ short/3D/PyLith/trunk/tests/2d/Makefile.am 2011-06-14 00:54:57 UTC (rev 18611)
@@ -19,8 +19,7 @@
SUBDIRS = \
maxwell \
slipdir \
- frictionslide \
- refinefaulttip
+ frictionslide
# End of file
Modified: short/3D/PyLith/trunk/tests/Makefile.am
===================================================================
--- short/3D/PyLith/trunk/tests/Makefile.am 2011-06-13 22:18:30 UTC (rev 18610)
+++ short/3D/PyLith/trunk/tests/Makefile.am 2011-06-14 00:54:57 UTC (rev 18611)
@@ -19,6 +19,7 @@
SUBDIRS = \
2d \
3d \
- topology
+ topology \
+ refinefaulttip
# End of file
Added: short/3D/PyLith/trunk/tests/refinefaulttip/Makefile.am
===================================================================
--- short/3D/PyLith/trunk/tests/refinefaulttip/Makefile.am (rev 0)
+++ short/3D/PyLith/trunk/tests/refinefaulttip/Makefile.am 2011-06-14 00:54:57 UTC (rev 18611)
@@ -0,0 +1,26 @@
+# -*- Makefile -*-
+#
+# ----------------------------------------------------------------------
+#
+# Brad T. Aagaard, U.S. Geological Survey
+# Charles A. Williams, GNS Science
+# Matthew G. Knepley, University of Chicago
+#
+# This code was developed as part of the Computational Infrastructure
+# for Geodynamics (http://geodynamics.org).
+#
+# Copyright (c) 2010 University of California, Davis
+#
+# See COPYING for license information.
+#
+# ----------------------------------------------------------------------
+#
+
+dist_noinst_DATA =\
+ tri3.cfg \
+ tri3.mesh \
+ quad4.cfg \
+ quad4.mesh
+
+
+# End of file
Added: short/3D/PyLith/trunk/tests/refinefaulttip/Makefile.in
===================================================================
--- short/3D/PyLith/trunk/tests/refinefaulttip/Makefile.in (rev 0)
+++ short/3D/PyLith/trunk/tests/refinefaulttip/Makefile.in 2011-06-14 00:54:57 UTC (rev 18611)
@@ -0,0 +1,443 @@
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+
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+# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation,
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+# Brad T. Aagaard, U.S. Geological Survey
+# Charles A. Williams, GNS Science
+# Matthew G. Knepley, University of Chicago
+#
+# This code was developed as part of the Computational Infrastructure
+# for Geodynamics (http://geodynamics.org).
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Added: short/3D/PyLith/trunk/tests/refinefaulttip/hex8.cfg
===================================================================
--- short/3D/PyLith/trunk/tests/refinefaulttip/hex8.cfg (rev 0)
+++ short/3D/PyLith/trunk/tests/refinefaulttip/hex8.cfg 2011-06-14 00:54:57 UTC (rev 18611)
@@ -0,0 +1,144 @@
+# -*- Python -*-
+[pylithapp]
+
+# ----------------------------------------------------------------------
+# journal
+# ----------------------------------------------------------------------
+# Turn on some journals to show progress.
+[pylithapp.journal.info]
+timedependent = 1
+implicit = 1
+petsc = 1
+meshiocubit = 1
+implicitelasticity = 1
+quadrature2d = 1
+fiatlagrange = 1
+faultcohesivedyn = 1
+
+[pylithapp.journal.debug]
+pylithapp = 1
+problem = 1
+implicit = 1
+
+# ----------------------------------------------------------------------
+# mesh_generator
+# ----------------------------------------------------------------------
+[pylithapp.mesh_generator]
+reader = pylith.meshio.MeshIOAscii
+debug = 1
+distributor.write_partition = True
+distributor.data_writer.filename = partition.vtk
+
+# SWITCH FOR REFINEMENT
+refiner = pylith.topology.RefineUniform
+
+
+[pylithapp.mesh_generator.reader]
+filename = hex8.mesh
+coordsys.space_dim = 3
+
+# ----------------------------------------------------------------------
+# problem
+# ----------------------------------------------------------------------
+[pylithapp.timedependent]
+dimension = 3
+
+formulation = pylith.problems.Implicit
+
+normalizer = spatialdata.units.NondimElasticQuasistatic
+normalizer.length_scale = 1.0*m
+normalizer.relaxation_time = 1.0*s
+
+bc = [xpos,xneg]
+interfaces = [fault]
+materials = [elastic]
+
+[pylithapp.timedependent.implicit.time_step]
+total_time = 0.0*s
+dt = 0.1*s
+
+# ----------------------------------------------------------------------
+# materials
+# ----------------------------------------------------------------------
+[pylithapp.timedependent.materials.elastic]
+label = Elastic material
+id = 0
+db_properties = spatialdata.spatialdb.UniformDB
+db_properties.label = Elastic properties
+db_properties.values = [density, vp, vs]
+db_properties.data = [2500.0*km/m**3, 5.1962*km/s, 3.0*km/s]
+
+quadrature.cell = pylith.feassemble.FIATLagrange
+quadrature.cell.dimension = 3
+quadrature.cell.quad_order = 2
+
+# ----------------------------------------------------------------------
+# boundary conditions
+# ----------------------------------------------------------------------
+[pylithapp.timedependent.bc]
+
+# Dirichlet BC on -x
+[pylithapp.timedependent.bc.xneg]
+bc_dof = [0, 1, 2]
+label = xneg
+
+
+# Dirichlet BC on +x
+[pylithapp.timedependent.bc.xpos]
+bc_dof = [0, 1, 2]
+label = xpos
+
+# ----------------------------------------------------------------------
+# faults
+# ----------------------------------------------------------------------
+[pylithapp.timedependent.interfaces.fault]
+id = 100
+label = fault
+quadrature.cell = pylith.feassemble.FIATLagrange
+quadrature.cell.dimension = 2
+quadrature.cell.quad_order = 2
+
+[pylithapp.timedependent.interfaces.fault.eq_srcs.rupture.slip_function]
+slip = spatialdata.spatialdb.UniformDB
+slip.label = Final slip
+slip.values = [left-lateral-slip,reverse-slip,fault-opening]
+slip.data = [0.1*m,0.0*m,0.0*m]
+
+slip_time = spatialdata.spatialdb.UniformDB
+slip_time.label = Slip initiation time
+slip_time.values = [slip-time]
+slip_time.data = [0.0*s]
+
+# ----------------------------------------------------------------------
+# PETSc
+# ----------------------------------------------------------------------
+[pylithapp.petsc]
+
+# Preconditioner settings.
+pc_type = asm
+sub_pc_factor_shift_type = nonzero
+
+# KSP
+ksp_rtol = 1.0e-12
+ksp_atol = 1.0e-15
+ksp_max_it = 500
+ksp_gmres_restart = 100
+
+ksp_monitor = true
+#ksp_view = true
+ksp_converged_reason = true
+
+# ----------------------------------------------------------------------
+# output
+# ----------------------------------------------------------------------
+[pylithapp.problem.formulation.output.output]
+vertex_data_fields = [displacement]
+writer.filename = hex8.vtk
+
+[pylithapp.timedependent.interfaces.fault.output]
+vertex_data_fields=[slip]
+writer.filename = hex8-fault.vtk
+
+[pylithapp.timedependent.materials.elastic.output]
+cell_filter = pylith.meshio.CellFilterAvgMesh
+writer.filename = hex8-statevars.vtk
Added: short/3D/PyLith/trunk/tests/refinefaulttip/hex8.mesh
===================================================================
--- short/3D/PyLith/trunk/tests/refinefaulttip/hex8.mesh (rev 0)
+++ short/3D/PyLith/trunk/tests/refinefaulttip/hex8.mesh 2011-06-14 00:54:57 UTC (rev 18611)
@@ -0,0 +1,136 @@
+// Original mesh
+//
+// Bottom
+// 2 ----- 5 ----- 8 -----11 -----14
+// | | | | |
+// | 4 | 5 | 6 | 7 |
+// | | | | |
+// 1 ----- 4 ----- 7 -----10 -----13
+// | | | | |
+// | 0 | 1 | 2 | 3 |
+// | | | | |
+// 0 ----- 3 ----- 6 ----- 9 -----12
+//
+// Top
+// 17 -----20 -----23 -----26 -----29
+// | | | | |
+// | | | | |
+// | | | | |
+// 16 -----19 -----22 -----25 -----28
+// | | | | |
+// | | | | |
+// | | | | |
+// 15 -----18 -----21 -----24 -----27
+//
+mesh = {
+ dimension = 3
+ use-index-zero = true
+ vertices = {
+ dimension = 3
+ count = 30
+ coordinates = {
+ 0 -2.0 -1.0 -1.0
+ 1 -2.0 0.0 -1.0
+ 2 -2.0 1.0 -1.0
+ 3 -1.0 -1.0 -1.0
+ 4 -1.0 0.0 -1.0
+ 5 -1.0 1.0 -1.0
+ 6 0.0 -1.0 -1.0
+ 7 0.0 0.0 -1.0
+ 8 0.0 1.0 -1.0
+ 9 +1.0 -1.0 -1.0
+ 10 +1.0 0.0 -1.0
+ 11 +1.0 1.0 -1.0
+ 12 +2.0 -1.0 -1.0
+ 13 +2.0 0.0 -1.0
+ 14 +2.0 1.0 -1.0
+ 15 -2.0 -1.0 +1.0
+ 16 -2.0 0.0 +1.0
+ 17 -2.0 1.0 +1.0
+ 18 -1.0 -1.0 +1.0
+ 19 -1.0 0.0 +1.0
+ 20 -1.0 1.0 +1.0
+ 21 0.0 -1.0 +1.0
+ 22 0.0 0.0 +1.0
+ 23 0.0 1.0 +1.0
+ 24 +1.0 -1.0 +1.0
+ 25 +1.0 0.0 +1.0
+ 26 +1.0 1.0 +1.0
+ 27 +2.0 -1.0 +1.0
+ 28 +2.0 0.0 +1.0
+ 29 +2.0 1.0 +1.0
+ }
+ }
+ cells = {
+ count = 8
+ num-corners = 8
+ simplices = {
+ 0 0 3 4 1 15 18 19 16
+ 1 3 6 7 4 18 21 22 19
+ 2 6 9 10 7 21 24 25 22
+ 3 9 12 13 10 24 27 28 25
+ 4 1 4 5 2 16 19 20 17
+ 5 4 7 8 5 19 22 23 20
+ 6 7 10 11 8 22 25 26 23
+ 7 10 13 14 11 25 28 29 26
+ }
+ material-ids = {
+ 0 0
+ 1 0
+ 2 0
+ 3 0
+ 4 0
+ 5 0
+ 6 0
+ 7 0
+ 8 0
+ 9 0
+ 10 0
+ 11 0
+ 12 0
+ 13 0
+ 14 0
+ 15 0
+ }
+ }
+ group = {
+ name = fault
+ type = vertices
+ count = 4
+ indices = {
+ 7 8 22 23
+ }
+ }
+ group = {
+ name = ypos
+ type = vertices
+ count = 10
+ indices = {
+ 2 5 8 11 14 17 20 23 26 29
+ }
+ }
+ group = {
+ name = yneg
+ type = vertices
+ count = 10
+ indices = {
+ 0 3 6 9 12 15 18 21 24 27
+ }
+ }
+ group = {
+ name = xpos
+ type = vertices
+ count = 6
+ indices = {
+ 12 13 14 27 28 29
+ }
+ }
+ group = {
+ name = xneg
+ type = vertices
+ count = 6
+ indices = {
+ 0 1 2 15 16 17
+ }
+ }
+}
Added: short/3D/PyLith/trunk/tests/refinefaulttip/quad4.cfg
===================================================================
--- short/3D/PyLith/trunk/tests/refinefaulttip/quad4.cfg (rev 0)
+++ short/3D/PyLith/trunk/tests/refinefaulttip/quad4.cfg 2011-06-14 00:54:57 UTC (rev 18611)
@@ -0,0 +1,147 @@
+# -*- Python -*-
+[pylithapp]
+
+# ----------------------------------------------------------------------
+# journal
+# ----------------------------------------------------------------------
+# Turn on some journals to show progress.
+[pylithapp.journal.info]
+timedependent = 1
+implicit = 1
+petsc = 1
+meshiocubit = 1
+implicitelasticity = 1
+quadrature2d = 1
+fiatlagrange = 1
+faultcohesivedyn = 1
+
+[pylithapp.journal.debug]
+pylithapp = 1
+problem = 1
+implicit = 1
+
+# ----------------------------------------------------------------------
+# mesh_generator
+# ----------------------------------------------------------------------
+[pylithapp.mesh_generator]
+reader = pylith.meshio.MeshIOAscii
+debug = 1
+distributor.write_partition = True
+distributor.data_writer.filename = partition.vtk
+
+# SWITCH FOR REFINEMENT
+refiner = pylith.topology.RefineUniform
+
+
+[pylithapp.mesh_generator.reader]
+filename = quad4.mesh
+coordsys.space_dim = 2
+
+# ----------------------------------------------------------------------
+# problem
+# ----------------------------------------------------------------------
+[pylithapp.timedependent]
+dimension = 2
+
+formulation = pylith.problems.Implicit
+
+normalizer = spatialdata.units.NondimElasticQuasistatic
+normalizer.length_scale = 1.0*m
+normalizer.relaxation_time = 1.0*s
+
+bc = [xpos,xneg]
+interfaces = [fault]
+materials = [elastic]
+
+[pylithapp.timedependent.implicit.time_step]
+total_time = 0.0*s
+dt = 0.1*s
+
+# ----------------------------------------------------------------------
+# materials
+# ----------------------------------------------------------------------
+[pylithapp.timedependent.materials]
+elastic = pylith.materials.ElasticPlaneStrain
+
+[pylithapp.timedependent.materials.elastic]
+label = Elastic material
+id = 0
+db_properties = spatialdata.spatialdb.UniformDB
+db_properties.label = Elastic properties
+db_properties.values = [density, vp, vs]
+db_properties.data = [2500.0*km/m**3, 5.1962*km/s, 3.0*km/s]
+
+quadrature.cell = pylith.feassemble.FIATLagrange
+quadrature.cell.dimension = 2
+quadrature.cell.quad_order = 2
+
+# ----------------------------------------------------------------------
+# boundary conditions
+# ----------------------------------------------------------------------
+[pylithapp.timedependent.bc]
+
+# Dirichlet BC on -x
+[pylithapp.timedependent.bc.xneg]
+bc_dof = [0, 1]
+label = xneg
+
+
+# Dirichlet BC on +x
+[pylithapp.timedependent.bc.xpos]
+bc_dof = [0, 1]
+label = xpos
+
+# ----------------------------------------------------------------------
+# faults
+# ----------------------------------------------------------------------
+[pylithapp.timedependent.interfaces.fault]
+id = 100
+label = fault
+quadrature.cell = pylith.feassemble.FIATLagrange
+quadrature.cell.dimension = 1
+quadrature.cell.quad_order = 2
+
+[pylithapp.timedependent.interfaces.fault.eq_srcs.rupture.slip_function]
+slip = spatialdata.spatialdb.UniformDB
+slip.label = Final slip
+slip.values = [left-lateral-slip,fault-opening]
+slip.data = [0.1*m, 0.0*m]
+
+slip_time = spatialdata.spatialdb.UniformDB
+slip_time.label = Slip initiation time
+slip_time.values = [slip-time]
+slip_time.data = [0.0*s]
+
+# ----------------------------------------------------------------------
+# PETSc
+# ----------------------------------------------------------------------
+[pylithapp.petsc]
+
+# Preconditioner settings.
+pc_type = asm
+sub_pc_factor_shift_type = nonzero
+
+# KSP
+ksp_rtol = 1.0e-12
+ksp_atol = 1.0e-15
+ksp_max_it = 500
+ksp_gmres_restart = 100
+
+ksp_monitor = true
+#ksp_view = true
+ksp_converged_reason = true
+
+# ----------------------------------------------------------------------
+# output
+# ----------------------------------------------------------------------
+[pylithapp.problem.formulation.output.output]
+vertex_data_fields = [displacement]
+writer.filename = quad4.vtk
+
+[pylithapp.timedependent.interfaces.fault.output]
+vertex_data_fields=[slip]
+writer.filename = quad4-fault.vtk
+
+[pylithapp.timedependent.materials.elastic.output]
+cell_filter = pylith.meshio.CellFilterAvgMesh
+writer.filename = quad4-statevars.vtk
Added: short/3D/PyLith/trunk/tests/refinefaulttip/quad4.mesh
===================================================================
--- short/3D/PyLith/trunk/tests/refinefaulttip/quad4.mesh (rev 0)
+++ short/3D/PyLith/trunk/tests/refinefaulttip/quad4.mesh 2011-06-14 00:54:57 UTC (rev 18611)
@@ -0,0 +1,101 @@
+// Original mesh
+//
+// 2 ----- 5 ----- 8 -----11 -----14
+// | | | | |
+// | 4 | 5 | 6 | 7 |
+// | | | | |
+// 1 ----- 4 ----- 7 -----10 -----13
+// | | | | |
+// | 0 | 1 | 2 | 3 |
+// | | | | |
+// 0 ----- 3 ----- 6 ----- 9 -----12
+//
+mesh = {
+ dimension = 2
+ use-index-zero = true
+ vertices = {
+ dimension = 2
+ count = 15
+ coordinates = {
+ 0 -2.0 -1.0
+ 1 -2.0 0.0
+ 2 -2.0 1.0
+ 3 -1.0 -1.0
+ 4 -1.0 0.0
+ 5 -1.0 1.0
+ 6 0.0 -1.0
+ 7 0.0 0.0
+ 8 0.0 1.0
+ 9 +1.0 -1.0
+ 10 +1.0 0.0
+ 11 +1.0 1.0
+ 12 +2.0 -1.0
+ 13 +2.0 0.0
+ 14 +2.0 1.0
+ }
+ }
+ cells = {
+ count = 8
+ num-corners = 4
+ simplices = {
+ 0 0 3 4 1
+ 1 3 6 7 4
+ 2 6 9 10 7
+ 3 9 12 13 10
+ 4 1 4 5 2
+ 5 4 7 8 5
+ 6 7 10 11 8
+ 7 10 13 14 11
+ }
+ material-ids = {
+ 0 0
+ 1 0
+ 2 0
+ 3 0
+ 4 0
+ 5 0
+ 6 0
+ 7 0
+ }
+ }
+ group = {
+ name = fault
+ type = vertices
+ count = 2
+ indices = {
+ 7 8
+ }
+ }
+ group = {
+ name = ypos
+ type = vertices
+ count = 5
+ indices = {
+ 2 5 8 11 14
+ }
+ }
+ group = {
+ name = yneg
+ type = vertices
+ count = 5
+ indices = {
+ 0 3 6 9 12
+ }
+ }
+ group = {
+ name = xpos
+ type = vertices
+ count = 3
+ indices = {
+ 12 13 14
+ }
+ }
+ group = {
+ name = xneg
+ type = vertices
+ count = 3
+ indices = {
+ 0 1 2
+ }
+ }
+}
Added: short/3D/PyLith/trunk/tests/refinefaulttip/tri3.cfg
===================================================================
--- short/3D/PyLith/trunk/tests/refinefaulttip/tri3.cfg (rev 0)
+++ short/3D/PyLith/trunk/tests/refinefaulttip/tri3.cfg 2011-06-14 00:54:57 UTC (rev 18611)
@@ -0,0 +1,147 @@
+# -*- Python -*-
+[pylithapp]
+
+# ----------------------------------------------------------------------
+# journal
+# ----------------------------------------------------------------------
+# Turn on some journals to show progress.
+[pylithapp.journal.info]
+timedependent = 1
+implicit = 1
+petsc = 1
+meshiocubit = 1
+implicitelasticity = 1
+quadrature2d = 1
+fiatlagrange = 1
+faultcohesivedyn = 1
+
+[pylithapp.journal.debug]
+pylithapp = 1
+problem = 1
+implicit = 1
+
+# ----------------------------------------------------------------------
+# mesh_generator
+# ----------------------------------------------------------------------
+[pylithapp.mesh_generator]
+reader = pylith.meshio.MeshIOAscii
+debug = 1
+distributor.write_partition = True
+distributor.data_writer.filename = partition.vtk
+
+# SWITCH FOR REFINEMENT
+refiner = pylith.topology.RefineUniform
+
+
+[pylithapp.mesh_generator.reader]
+filename = tri3.mesh
+coordsys.space_dim = 2
+
+# ----------------------------------------------------------------------
+# problem
+# ----------------------------------------------------------------------
+[pylithapp.timedependent]
+dimension = 2
+
+formulation = pylith.problems.Implicit
+
+normalizer = spatialdata.units.NondimElasticQuasistatic
+normalizer.length_scale = 1.0*m
+normalizer.relaxation_time = 1.0*s
+
+bc = [xpos,xneg]
+interfaces = [fault]
+materials = [elastic]
+
+[pylithapp.timedependent.implicit.time_step]
+total_time = 0.0*s
+dt = 0.1*s
+
+# ----------------------------------------------------------------------
+# materials
+# ----------------------------------------------------------------------
+[pylithapp.timedependent.materials]
+elastic = pylith.materials.ElasticPlaneStrain
+
+[pylithapp.timedependent.materials.elastic]
+label = Elastic material
+id = 0
+db_properties = spatialdata.spatialdb.UniformDB
+db_properties.label = Elastic properties
+db_properties.values = [density, vp, vs]
+db_properties.data = [2500.0*km/m**3, 5.1962*km/s, 3.0*km/s]
+
+quadrature.cell = pylith.feassemble.FIATSimplex
+quadrature.cell.shape = triangle
+quadrature.cell.quad_order = 2
+
+# ----------------------------------------------------------------------
+# boundary conditions
+# ----------------------------------------------------------------------
+[pylithapp.timedependent.bc]
+
+# Dirichlet BC on -x
+[pylithapp.timedependent.bc.xneg]
+bc_dof = [0, 1]
+label = xneg
+
+
+# Dirichlet BC on +x
+[pylithapp.timedependent.bc.xpos]
+bc_dof = [0, 1]
+label = xpos
+
+# ----------------------------------------------------------------------
+# faults
+# ----------------------------------------------------------------------
+[pylithapp.timedependent.interfaces.fault]
+id = 100
+label = fault
+quadrature.cell = pylith.feassemble.FIATSimplex
+quadrature.cell.shape = line
+quadrature.cell.quad_order = 2
+
+[pylithapp.timedependent.interfaces.fault.eq_srcs.rupture.slip_function]
+slip = spatialdata.spatialdb.UniformDB
+slip.label = Final slip
+slip.values = [left-lateral-slip,fault-opening]
+slip.data = [0.1*m, 0.0*m]
+
+slip_time = spatialdata.spatialdb.UniformDB
+slip_time.label = Slip initiation time
+slip_time.values = [slip-time]
+slip_time.data = [0.0*s]
+
+# ----------------------------------------------------------------------
+# PETSc
+# ----------------------------------------------------------------------
+[pylithapp.petsc]
+
+# Preconditioner settings.
+pc_type = asm
+sub_pc_factor_shift_type = nonzero
+
+# KSP
+ksp_rtol = 1.0e-12
+ksp_atol = 1.0e-15
+ksp_max_it = 500
+ksp_gmres_restart = 100
+
+ksp_monitor = true
+#ksp_view = true
+ksp_converged_reason = true
+
+# ----------------------------------------------------------------------
+# output
+# ----------------------------------------------------------------------
+[pylithapp.problem.formulation.output.output]
+vertex_data_fields = [displacement]
+writer.filename = tri3.vtk
+
+[pylithapp.timedependent.interfaces.fault.output]
+vertex_data_fields=[slip]
+writer.filename = tri3-fault.vtk
+
+[pylithapp.timedependent.materials.elastic.output]
+cell_filter = pylith.meshio.CellFilterAvgMesh
+writer.filename = tri3-statevars.vtk
Added: short/3D/PyLith/trunk/tests/refinefaulttip/tri3.mesh
===================================================================
--- short/3D/PyLith/trunk/tests/refinefaulttip/tri3.mesh (rev 0)
+++ short/3D/PyLith/trunk/tests/refinefaulttip/tri3.mesh 2011-06-14 00:54:57 UTC (rev 18611)
@@ -0,0 +1,117 @@
+// Original mesh
+//
+// 2 ----- 5 ----- 8 -----11 -----14
+// | 3 / | \ 7 |10 / | \ 15 |
+// | / 2 | \ | / | \ |
+// | / | 6 \ | / 11 | 14 \ |
+// 1 ----- 4 ----- 7 -----10 -----13
+// | \ 1 | 4 / | \ 9 | 12 / |
+// | \ | / | \ | / |
+// | 0 \ | / 5 | 8 \ | / 13 |
+// 0 ----- 3 ----- 6 ----- 9 -----12
+//
+mesh = {
+ dimension = 2
+ use-index-zero = true
+ vertices = {
+ dimension = 2
+ count = 15
+ coordinates = {
+ 0 -2.0 -1.0
+ 1 -2.0 0.0
+ 2 -2.0 1.0
+ 3 -1.0 -1.0
+ 4 -1.0 0.0
+ 5 -1.0 1.0
+ 6 0.0 -1.0
+ 7 0.0 0.0
+ 8 0.0 1.0
+ 9 +1.0 -1.0
+ 10 +1.0 0.0
+ 11 +1.0 1.0
+ 12 +2.0 -1.0
+ 13 +2.0 0.0
+ 14 +2.0 1.0
+ }
+ }
+ cells = {
+ count = 16
+ num-corners = 3
+ simplices = {
+ 0 0 3 1
+ 1 1 3 4
+ 2 1 4 5
+ 3 1 5 2
+ 4 3 7 4
+ 5 3 6 7
+ 6 4 7 5
+ 7 5 7 8
+ 8 7 6 9
+ 9 7 9 10
+ 10 7 11 8
+ 11 7 10 11
+ 12 9 13 10
+ 13 9 12 13
+ 14 10 13 11
+ 15 11 13 14
+ }
+ material-ids = {
+ 0 0
+ 1 0
+ 2 0
+ 3 0
+ 4 0
+ 5 0
+ 6 0
+ 7 0
+ 8 0
+ 9 0
+ 10 0
+ 11 0
+ 12 0
+ 13 0
+ 14 0
+ 15 0
+ }
+ }
+ group = {
+ name = fault
+ type = vertices
+ count = 2
+ indices = {
+ 7 8
+ }
+ }
+ group = {
+ name = ypos
+ type = vertices
+ count = 5
+ indices = {
+ 2 5 8 11 14
+ }
+ }
+ group = {
+ name = yneg
+ type = vertices
+ count = 5
+ indices = {
+ 0 3 6 9 12
+ }
+ }
+ group = {
+ name = xpos
+ type = vertices
+ count = 3
+ indices = {
+ 12 13 14
+ }
+ }
+ group = {
+ name = xneg
+ type = vertices
+ count = 3
+ indices = {
+ 0 1 2
+ }
+ }
+}
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